id	chromosome	start	end	strand	transcript	site_in_transcript	modification	site_in_pqs	pqs	Optimal_secondary_structure	site_type	RNAtype	biological_source	modification_method	rG4_method	source	publication	PQS_length	PQS_range	symbol	Xgnc_id	ensembl_id	raw_PQS
mmu_pseudouridine_1	chrX	20853343	20853344	+	ENSMUST00000242667	Ψ2373	Ψ	Ψ8	5'-GGAGGUGΨGGCCUUGUUGG-3'	.(((((...)))))..... ( -3.60)	loop	lncRNA	liver	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	19	chrX:20853337-20853355	A230072C01Rik	MGI:2444644	ENSMUSG00000086877	GGAGGUGUGGCCUUGUUGG
mmu_pseudouridine_10	chr4	138038222	138038223	+	ENSMUST00000030538	Ψ1021	Ψ	Ψ9	5'-GGGUGUCCΨUCGAGUAGGGCCUGUGUCCCAUCACCGGGUGGG-3'	.((.(((((......)))))))....((((((....)))))) (-14.30)	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	42	chr4:138038215-138038256	Ddost	MGI:1194508	ENSMUSG00000028757	GGGUGUCCUUCGAGUAGGGCCUGUGUCCCAUCACCGGGUGGG
mmu_pseudouridine_11	chr4	149649425	149649426	+	ENSMUST00000030839	Ψ1206	Ψ	Ψ4	5'-GGUΨACAUGAGGCCUGAGGGUACACCUGG-3'	((((......))))..(((.....))).. ( -5.50)	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	29	chr4:149649423-149649451	Ctnnbip1	MGI:1915756	ENSMUSG00000028988	GGUUACAUGAGGCCUGAGGGUACACCUGG
mmu_pseudouridine_12	chr9	50555344	50555345	-	ENSMUST00000034567	Ψ1678	Ψ	Ψ12	5'-GGUGCUGUUGGΨACGGAAGG-3'	.(((((...)))))...... ( -3.50)	loop	mRNA	liver	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	20	chr9:50555337-50555356	Dlat	MGI:2385311	ENSMUSG00000000168	GGUGCUGUUGGUACGGAAGG
mmu_pseudouridine_13	chr11	119035035	119035036	-	ENSMUST00000036113	Ψ5821	Ψ	Ψ14	5'-GGAGUGUCAGGCAΨACCCGGGGCUGG-3'	..(((.((.((....)).)).))).. ( -5.80)	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	26	chr11:119035024-119035049	Tbc1d16	MGI:2652878	ENSMUSG00000039976	GGAGUGUCAGGCAUACCCGGGGCUGG
mmu_pseudouridine_14	chr2	151951571	151951572	+	ENSMUST00000041500	Ψ1088	Ψ	Ψ9	5'-GGCAGGGCΨUCCUCUCGGGAGUCCUUUGG-3'	...(((((((((....))))))))).... (-13.50)	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	29	chr2:151951564-151951592	Srxn1	MGI:104971	ENSMUSG00000032802	GGCAGGGCUUCCUCUCGGGAGUCCUUUGG
mmu_pseudouridine_15	chr11	72347480	72347481	-	ENSMUST00000045303	Ψ1232	Ψ	Ψ4	5'-GGCΨUCCUGGGCGUAGUCACGGGCGCGGG-3'	.....((((.((..........)).)))) ( -8.40)	loop	mRNA	liver	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	29	chr11:72347456-72347484	Spns2	MGI:2384936	ENSMUSG00000040447	GGCUUCCUGGGCGUAGUCACGGGCGCGGG
mmu_pseudouridine_16	chr4	106444660	106444661	+	ENSMUST00000047973	Ψ2379	Ψ	Ψ16	5'-GGUGGGAAGCCUGGCΨUUCCUGG-3'	...(((((((...)))))))... ( -8.30)	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	23	chr4:106444646-106444668	Dhcr24	MGI:1922004	ENSMUSG00000034926	GGUGGGAAGCCUGGCUUUCCUGG
mmu_pseudouridine_17	chr11	77908932	77908933	+	ENSMUST00000049167	Ψ1522	Ψ	Ψ12	5'-GGUGCCAGGUGΨUUGAUCGGUUCCAGG-3'	((.(((.(((.....)))))).))... ( -7.40)	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	27	chr11:77908922-77908948	Phf12	MGI:1924057	ENSMUSG00000037791	GGUGCCAGGUGUUUGAUCGGUUCCAGG
mmu_pseudouridine_18	chr19	28997117	28997118	+	ENSMUST00000050148	Ψ4660	Ψ	Ψ6	5'-GGGGCΨAUGGGUGG-3'	NA	loop	mRNA	liver	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	14	chr19:28997113-28997126	Cdc37l1	MGI:1914322	ENSMUSG00000024780	GGGGCUAUGGGUGG
mmu_pseudouridine_19	chr5	115693513	115693514	+	ENSMUST00000067268	Ψ3174	Ψ	Ψ6	5'-GGGGUΨUGUGUUGGGGGGCUGGGGAAGGGGG-3'	..(((((........)))))........... ( -1.50)	bulge	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	26075521	31	chr5:115693509-115693539	Pxn	MGI:108295	ENSMUSG00000029528	GGGGUUUGUGUUGGGGGGCUGGGGAAGGGGG
mmu_pseudouridine_2	chr3	87823137	87823138	+	ENSMUST00000005017	Ψ1944	Ψ	Ψ8	5'-GGUGCGCΨAGGAGGGAGG-3'	NA	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	26075521	18	chr3:87823131-87823148	Hdgf	MGI:1194494	ENSMUSG00000004897	GGUGCGCUAGGAGGGAGG
mmu_pseudouridine_20	chr17	8562410	8562411	+	ENSMUST00000069742	Ψ2874	Ψ	Ψ22	5'-GGGGUGGAAGGGCUGUUCCUCΨAGGCAAGUUGGGUGGUGAGGG-3'	..(((......)))...((((...((.......))...)))). ( -6.70)	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	26075521	43	chr17:8562390-8562432	Prr18	MGI:2443403	ENSMUSG00000055945	GGGGUGGAAGGGCUGUUCCUCUAGGCAAGUUGGGUGGUGAGGG
mmu_pseudouridine_21	chr17	28424585	28424586	+	ENSMUST00000073534	Ψ2590	Ψ	Ψ6	5'-GGGGCΨACGGUGG-3'	NA	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	26075521	13	chr17:28424581-28424593	Zfp523	MGI:2687278	ENSMUSG00000024220	GGGGCUACGGUGG
mmu_pseudouridine_22	chr2	27652099	27652100	+	ENSMUST00000077257	Ψ4036	Ψ	Ψ13	5'-GGCAUCCCAGGAΨACCUGGCGAAAGCAGG-3'	.((.(((((((...))))).))..))... ( -9.10)	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	29	chr2:27652088-27652116	Rxra	MGI:98214	ENSMUSG00000015846	GGCAUCCCAGGAUACCUGGCGAAAGCAGG
mmu_pseudouridine_23	chr2	124508845	124508846	+	ENSMUST00000077847	Ψ5601	Ψ	Ψ12	5'-GGUUCCCAGGUΨAUGUGGCACCUGCGG-3'	....(((((((........))))).)) ( -7.20)	loop	mRNA	liver	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	27	chr2:124508835-124508861	Sema6d	MGI:2387661	ENSMUSG00000027200	GGUUCCCAGGUUAUGUGGCACCUGCGG
mmu_pseudouridine_24	chr15	88971048	88971049	+	ENSMUST00000081702	Ψ2208	Ψ	Ψ18	5'-GGGCAGUAGGCACCCACΨAUGGGCCACGG-3'	.(((.((((.......))))..))).... ( -7.50)	loop	mRNA	liver	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	29	chr15:88971032-88971060	Trabd	MGI:1915226	ENSMUSG00000015363	GGGCAGUAGGCACCCACUAUGGGCCACGG
mmu_pseudouridine_25	chr4	155868134	155868135	-	ENSMUST00000097742	Ψ1384	Ψ	Ψ6	5'-GGUUCΨAGGACUGCAACCUGGGUCCUCUGG-3'	((.((((((.......)))))).))..... ( -8.10)	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	30	chr4:155868111-155868140	Tmem88b	MGI:2444329	ENSMUSG00000073680	GGUUCUAGGACUGCAACCUGGGUCCUCUGG
mmu_pseudouridine_26	chr4	137970301	137970302	+	ENSMUST00000105827	Ψ3463	Ψ	Ψ16	5'-GGCUGGGAAAUGGACΨUAAGG-3'	NA	loop	mRNA	liver	CeU-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	26075521	21	chr4:137970287-137970307	Hp1bp3	MGI:109369	ENSMUSG00000028759	GGCUGGGAAAUGGACUUAAGG
mmu_pseudouridine_27	chr11	118074803	118074804	-	ENSMUST00000106305	Ψ586	Ψ	Ψ6	5'-GGAGCΨUCCGGCUCCCUGGAGAGG-3'	((((((...))))))......... ( -8.20)	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	24	chr11:118074786-118074809	Cyth1	MGI:1334257	ENSMUSG00000017132	GGAGCUUCCGGCUCCCUGGAGAGG
mmu_pseudouridine_28	chr2	165120281	165120282	-	ENSMUST00000109300	Ψ1037	Ψ	Ψ8	5'-GGGCUGCΨCCUGUGGGUGCUUGGGAGCCUCCUCCUCGGUGGG-3'	(((..(((((((........)))))))..)))((.....)). (-13.50)	loop	mRNA	liver	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	42	chr2:165120248-165120289	Slc35c2	MGI:2385166	ENSMUSG00000017664	GGGCUGCUCCUGUGGGUGCUUGGGAGCCUCCUCCUCGGUGGG
mmu_pseudouridine_29	chr15	38018663	38018664	-	ENSMUST00000110336	Ψ2886	Ψ	Ψ10	5'-GGCCAAGGAΨUGCAUGGGAGG-3'	..(((.........))).... ( -0.70)	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	21	chr15:38018653-38018673	Ubr5	MGI:1918040	ENSMUSG00000037487	GGCCAAGGAUUGCAUGGGAGG
mmu_pseudouridine_3	chr17	35124630	35124631	+	ENSMUST00000013931	Ψ1322	Ψ	Ψ6	5'-GGAGGΨUCCUCUGGGGUCCCUGG-3'	..(((..(((...)))..))).. ( -5.40)	loop	mRNA	liver	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	23	chr17:35124626-35124648	Ehmt2	MGI:2148922	ENSMUSG00000013787	GGAGGUUCCUCUGGGGUCCCUGG
mmu_pseudouridine_30	chr1	191511726	191511727	+	ENSMUST00000110855	Ψ2593	Ψ	Ψ3	5'-GGΨGGCAGGACCUGG-3'	(((......)))... ( -2.80)	loop	mRNA	liver	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	15	chr1:191511725-191511739	Lpgat1	MGI:2446186	ENSMUSG00000026623	GGUGGCAGGACCUGG
mmu_pseudouridine_31	chr5	110407814	110407815	-	ENSMUST00000112505	Ψ1279	Ψ	Ψ6	5'-GGUAGΨAUGGUGGUUUACAGG-3'	....(((........)))... ( -0.70)	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	21	chr5:110407800-110407820	Pgam5	MGI:1919792	ENSMUSG00000029500	GGUAGUAUGGUGGUUUACAGG
mmu_pseudouridine_32	chr16	10549615	10549616	+	ENSMUST00000115824	Ψ2912	Ψ	Ψ17	5'-GGAGCCCUGGUGGCAGΨGG-3'	....(((((....))).)) ( -3.80)	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	19	chr16:10549600-10549618	Clec16a	MGI:1921624	ENSMUSG00000068663	GGAGCCCUGGUGGCAGUGG
mmu_pseudouridine_33	chr7	25063332	25063333	+	ENSMUST00000128119	Ψ8031	Ψ	Ψ6	5'-GGGUGΨAGGAGACCCCAACGGGCCUGG-3'	.....((((...(((....))))))). ( -5.60)	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	27	chr7:25063328-25063354	Megf8	MGI:2446294	ENSMUSG00000045039	GGGUGUAGGAGACCCCAACGGGCCUGG
mmu_pseudouridine_34	chr2	180717493	180717494	-	ENSMUST00000149964	Ψ8087	Ψ	Ψ32	5'-GGGCGGGCCAACGUGUGCUCGCAGGGAACUUΨGGG-3'	..((((((((...)).))))))............. ( -9.90)	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	35	chr2:180717491-180717525	Kcnq2	MGI:1309503	ENSMUSG00000016346	GGGCGGGCCAACGUGUGCUCGCAGGGAACUUUGGG
mmu_pseudouridine_35	chr6	88804848	88804849	+	ENSMUST00000163271	Ψ3498	Ψ	Ψ11	5'-GGAAUUGGGGΨACGG-3'	NA	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	26075521	15	chr6:88804839-88804853	Mgll	MGI:1346042	ENSMUSG00000033174	GGAAUUGGGGUACGG
mmu_pseudouridine_36	chr11	6565711	6565712	-	ENSMUST00000189268	Ψ2234	Ψ	Ψ15	5'-GGCUGGAACUGGCUΨACAGG-3'	........(((.....))). ( -2.60)	loop	mRNA	liver	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	20	chr11:6565707-6565726	Tbrg4	MGI:1100868	ENSMUSG00000000384	GGCUGGAACUGGCUUACAGG
mmu_pseudouridine_37	chr18	9858853	9858854	+	ENSMUST00000234965	Ψ1794	Ψ	Ψ14	5'-GGGCCCUCCUGGCΨUCCAGGGACUACAGGGCACUGUGGG-3'	......((((((...)))))).((((((....)))))). (-15.40)	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	39	chr18:9858841-9858879	Colec12	MGI:2152907	ENSMUSG00000036103	GGGCCCUCCUGGCUUCCAGGGACUACAGGGCACUGUGGG
mmu_pseudouridine_38	chr15	76608773	76608774	-	ENSMUST00000239003	Ψ3998	Ψ	Ψ7	5'-GGCCACΨACUAGGACUUGGCUCCGUCGG-3'	(((((...........)))))....... ( -4.10)	loop	mRNA	liver	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	28	chr15:76608753-76608780	Arhgap39	MGI:107858	ENSMUSG00000033697	GGCCACUACUAGGACUUGGCUCCGUCGG
mmu_pseudouridine_4	chr11	62207422	62207423	-	ENSMUST00000018645	Ψ8866	Ψ	Ψ27	5'-GGGGGGGGGGUAAUGCCACUAAGAACΨAGAAGGGAGAGGGAGG-3'	.....((((......)).))....................... ( -2.30)	loop	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	26075521	43	chr11:62207407-62207449	Ncor1	MGI:1349717	ENSMUSG00000018501	GGGGGGGGGGUAAUGCCACUAAGAACUAGAAGGGAGAGGGAGG
mmu_pseudouridine_5	chr11	72973887	72973888	+	ENSMUST00000021135	Ψ5851	Ψ	Ψ12	5'-GGCUGGGGAAAΨAGG-3'	..(((......))). ( -0.10)	loop	mRNA	liver	CeU-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	26075521	15	chr11:72973877-72973891	Ncbp3	MGI:1914124	ENSMUSG00000020783	GGCUGGGGAAAUAGG
mmu_pseudouridine_6	chr13	55510350	55510351	-	ENSMUST00000021940	Ψ246	Ψ	Ψ3	5'-GGΨGCCCAGGGAGGCCUGG-3'	.....(((((....))))) ( -7.70)	loop	mRNA	liver	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	19	chr13:55510335-55510353	Lman2	MGI:1914140	ENSMUSG00000021484	GGUGCCCAGGGAGGCCUGG
mmu_pseudouridine_7	chr17	12894563	12894564	-	ENSMUST00000024596	Ψ153	Ψ	Ψ17	5'-GGCCUGGCUGAGUUGGΨGAGG-3'	..(((.(((.....))).))) ( -5.50)	loop	mRNA	liver	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	21	chr17:12894560-12894580	Slc22a1	MGI:108111	ENSMUSG00000023829	GGCCUGGCUGAGUUGGUGAGG
mmu_pseudouridine_8	chr18	63128054	63128055	+	ENSMUST00000025474	Ψ825	Ψ	Ψ15	5'-GGCUUUAACGGCAGΨGAGG-3'	.(((.....)))....... ( -1.30)	bulge	mRNA	brain	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	19	chr18:63128041-63128059	Napg	MGI:104561	ENSMUSG00000024581	GGCUUUAACGGCAGUGAGG
mmu_pseudouridine_9	chr2	13579284	13579285	+	ENSMUST00000028062	Ψ523	Ψ	Ψ6	5'-GGAUGΨUCGGUGGCUCCGG-3'	(((.(((....)))))).. ( -3.10)	loop	mRNA	liver	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	19	chr2:13579280-13579298	Vim	MGI:98932	ENSMUSG00000026728	GGAUGUUCGGUGGCUCCGG
