id	chromosome	start	end	strand	transcript	site_in_transcript	modification	site_in_pqs	pqs	Optimal_secondary_structure	site_type	RNAtype	biological_source	modification_method	rG4_method	source	publication	PQS_length	PQS_range	symbol	Xgnc_id	ensembl_id	raw_PQS
hsa_pseudouridine_1	chr22	21762149	21762150	-	ENST00000215832	Ψ3388	Ψ	Ψ14	5'-GGCUGAGGAAGGAΨAGCUGG-3'	(((((........))))).. ( -3.10)	loop	mRNA	293T;HeLa	CeU-Seq:(High);BACS:(High);PRAISE:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;39349603;36997645	26075521;39349603;36997645	20	chr22:21762144-21762163	MAPK1	HGNC:6871	ENSG00000100030	GGCUGAGGAAGGAUAGCUGG
hsa_pseudouridine_2	chr12	6860186	6860187	+	ENST00000229268	Ψ1197	Ψ	Ψ8	5'-GGGAGUAΨUCCAAGCCAGUACCGGAGUCGGGCGAUGGGGAGCGGG-3'	.(((....)))...(((...(((....)))....)))........ ( -9.00)	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	45	chr12:6860180-6860224	USP5	HGNC:12628	ENSG00000111667	GGGAGUAUUCCAAGCCAGUACCGGAGUCGGGCGAUGGGGAGCGGG
hsa_pseudouridine_3	chr3	9761492	9761493	-	ENST00000256460	Ψ748	Ψ	Ψ10	5'-GGCUGUGGAΨUGCUGGUCCAUAGG-3'	..(((((((((...))))))))). ( -9.70)	loop	mRNA	293T;HeLa	CeU-Seq:(High);BACS:(High);PRAISE:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;39349603;36997645	26075521;39349603;36997645	24	chr3:9761479-9761502	CAMK1	HGNC:1459	ENSG00000134072	GGCUGUGGAUUGCUGGUCCAUAGG
hsa_pseudouridine_4	chr19	55401437	55401438	-	ENST00000264552	Ψ866	Ψ	Ψ18	5'-GGGCGCUGCGGCGGCUGΨAGUGG-3'	...((((((((...)))))))). ( -9.00)	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	26075521	23	chr19:55401433-55401455	UBE2S	HGNC:17895	ENSG00000108106	GGGCGCUGCGGCGGCUGUAGUGG
hsa_pseudouridine_5	chr5	135033843	135033844	-	ENST00000265340	Ψ385	Ψ	Ψ9	5'-GGAGCGGCΨGCCGGAGGG-3'	....(((...)))..... ( -1.70)	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	18	chr5:135033835-135033852	PITX1	HGNC:9004	ENSG00000069011	GGAGCGGCUGCCGGAGGG
hsa_pseudouridine_6	chr13	32538655	32538656	-	ENST00000267068	Ψ140	Ψ	Ψ6	5'-GGUUUΨAUUGGGAGGUAAAGG-3'	..(((((((....))))))). ( -1.20)	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	21	chr13:32538641-32538661	N4BP2L2	HGNC:26916	ENSG00000244754	GGUUUUAUUGGGAGGUAAAGG
hsa_pseudouridine_7	chr3	45677812	45677813	+	ENST00000273317	Ψ2914	Ψ	Ψ15	5'-GGAGAAGAACUUGGΨGCAGGCACCAGG-3'	.........(((((((....))))))) ( -8.40)	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	27	chr3:45677799-45677825	LIMD1	HGNC:6612	ENSG00000144791	GGAGAAGAACUUGGUGCAGGCACCAGG
hsa_pseudouridine_8	chr3	120709849	120709850	-	ENST00000273375	Ψ207	Ψ	Ψ5	5'-GGGAΨGUUGGAGGCUCUGUGG-3'	.(((.(((...)))))).... ( -0.20)	loop	mRNA	-	CeU-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	26075521	21	chr3:120709834-120709854	RABL3	HGNC:18072	ENSG00000144840	GGGAUGUUGGAGGCUCUGUGG
hsa_pseudouridine_9	chr4	67545447	67545448	-	ENST00000273853	Ψ56	Ψ	Ψ16	5'-GGCCGCGGCCUGGUAΨUCCGG-3'	(((....)))(((....))). ( -5.50)	loop	mRNA	-	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database	26075521	21	chr4:67545443-67545463	CENPC	HGNC:1854	ENSG00000145241	GGCCGCGGCCUGGUAUUCCGG
hsa_pseudouridine_10	chr4	67508911	67508912	-	ENST00000273853	Ψ1954	Ψ	Ψ12	5'-GGUUCUGGAGGΨAUCGUUGG-3'	NA	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	20	chr4:67508904-67508923	CENPC	HGNC:1854	ENSG00000145241	GGUUCUGGAGGUAUCGUUGG
hsa_pseudouridine_11	chr11	65125994	65125995	+	ENST00000279242	Ψ650	Ψ	Ψ12	5'-GGCUAAAGGACΨUUGGGGUCAGG-3'	........((((....))))... ( -2.70)	loop	mRNA	-	CeU-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	26075521	23	chr11:65125984-65126006	MRPL49	HGNC:1176	ENSG00000149792	GGCUAAAGGACUUUGGGGUCAGG
hsa_pseudouridine_12	chr11	134240113	134240114	+	ENST00000281187	Ψ956	Ψ	Ψ13	5'-GGAGGUUGGGAUΨGAGG-3'	NA	loop	mRNA	-	CeU-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	26075521	17	chr11:134240102-134240118	VPS26B	HGNC:28119	ENSG00000151502	GGAGGUUGGGAUUGAGG
hsa_pseudouridine_13	chr12	9695680	9695681	+	ENST00000290855	Ψ1405	Ψ	Ψ6	5'-GGACUΨAAGGUUGAAGUGUGGUUCAGG-3'	(((((..............)))))... ( -2.80)	loop	mRNA	-	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database	26075521	27	chr12:9695676-9695702	CLEC2D	HGNC:14351	ENSG00000069493	GGACUUAAGGUUGAAGUGUGGUUCAGG
hsa_pseudouridine_14	chr19	48961014	48961015	+	ENST00000293288	Ψ575	Ψ	Ψ15	5'-GGGACCCUGGGCCUΨCUGGAGCAGG-3'	.....((((..((....))..)))) ( -7.80)	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	25	chr19:48961001-48961025	BAX	HGNC:959	ENSG00000087088	GGGACCCUGGGCCUUCUGGAGCAGG
hsa_pseudouridine_15	chr5	16465513	16465514	-	ENST00000308683	Ψ287	Ψ	Ψ17	5'-GGCUUCCAGGAGCGAGΨGCGGGCGCAGCGG-3'	.((((....))))...(((....))).... ( -4.70)	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	30	chr5:16465501-16465530	ZNF622	HGNC:30958	ENSG00000173545	GGCUUCCAGGAGCGAGUGCGGGCGCAGCGG
hsa_pseudouridine_16	chr11	8684036	8684037	+	ENST00000314138	Ψ121	Ψ	Ψ12	5'-GGCGGCCGCGGΨAAUGCUGG-3'	..((((.........)))). ( -2.70)	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	20	chr11:8684026-8684045	RPL27A	HGNC:10329	ENSG00000166441	GGCGGCCGCGGUAAUGCUGG
hsa_pseudouridine_17	chr1	20637905	20637906	+	ENST00000321556	Ψ543	Ψ	Ψ5	5'-GGCUΨUCGGCUGGAGG-3'	((((...))))..... ( -1.90)	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	16	chr1:20637902-20637917	PINK1	HGNC:14581	ENSG00000158828	GGCUUUCGGCUGGAGG
hsa_pseudouridine_18	chr10	72333114	72333115	-	ENST00000338820	Ψ4075	Ψ	Ψ16	5'-GGAAAGGAAGUUCGGΨAAGG-3'	NA	loop	mRNA	-	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database	26075521	20	chr10:72333111-72333130	DNAJB12	HGNC:14891	ENSG00000148719	GGAAAGGAAGUUCGGUAAGG
hsa_pseudouridine_19	chr17	43193517	43193518	+	ENST00000341165	Ψ1544	Ψ	Ψ12	5'-GGCCAGCAAUUΨGGGCCUCGGGUCUGG-3'	((((.........)))).......... ( -6.20)	loop	mRNA	HEK293	Ψ-seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	25219674	27	chr17:43193507-43193533	NBR1	HGNC:6746	ENSG00000188554	GGCCAGCAAUUUGGGCCUCGGGUCUGG
hsa_pseudouridine_20	chr11	70420426	70420427	+	ENST00000346329	Ψ1015	Ψ	Ψ16	5'-GGUUUGGAGGAAAAUΨUGG-3'	NA	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	19	chr11:70420412-70420430	CTTN	HGNC:3338	ENSG00000085733	GGUUUGGAGGAAAAUUUGG
hsa_pseudouridine_21	chr1	45614124	45614125	+	ENST00000350030	Ψ1642	Ψ	Ψ13	5'-GGAGGAGGAGAUΨGG-3'	NA	loop	mRNA	HEK293	Ψ-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	25219674	15	chr1:45614113-45614127	NASP	HGNC:7644	ENSG00000132780	GGAGGAGGAGAUUGG
hsa_pseudouridine_22	chr2	74370730	74370731	-	ENST00000361874	Ψ1256	Ψ	Ψ21	5'-GGCCACUUUGGACAAGGAGAΨGG-3'	..(((((((......)))).))) ( -3.40)	loop	mRNA	HEK293	Ψ-seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	25219674	23	chr2:74370729-74370751	DCTN1	HGNC:2711	ENSG00000204843	GGCCACUUUGGACAAGGAGAUGG
hsa_pseudouridine_23	chr1	230236036	230236037	+	ENST00000366672	Ψ441	Ψ	Ψ16	5'-GGAAGCAGUGGCGGGΨGG-3'	....((....))...... ( -0.60)	loop	mRNA	293T;HeLa treatment: Sodium Bisulfite;HeLa	CeU-Seq:(High);RBS-Seq:(High);BACS:(High);PRAISE:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database;39349603;36997645	30872485;26075521;39349603;36997645	18	chr1:230236022-230236039	GALNT2	HGNC:4124	ENSG00000143641	GGAAGCAGUGGCGGGUGG
hsa_pseudouridine_24	chr10	97570692	97570693	+	ENST00000370664	Ψ1134	Ψ	Ψ3	5'-GGΨACCCAGGGAGCAGGCAGCCACACACGG-3'	(((..((........))..)))........ ( -5.30)	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	30	chr10:97570691-97570720	UBTD1	HGNC:25683	ENSG00000165886	GGUACCCAGGGAGCAGGCAGCCACACACGG
hsa_pseudouridine_25	chr10	74107258	74107259	+	ENST00000372755	Ψ2558	Ψ	Ψ11	5'-GGACUCAGGAΨAUCGGAUCCUGG-3'	.....((((((.....)))))). ( -7.30)	loop	mRNA	293T;HeLa treatment: Sodium Bisulfite;HeLa	BACS:(High);CeU-Seq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	39349603;RMBase database;m6A-Atlas database;RMVar database	30872485;39349603;26075521	23	chr10:74107249-74107271	VCL	HGNC:12665	ENSG00000035403	GGACUCAGGAUAUCGGAUCCUGG
hsa_pseudouridine_26	chr6	31781526	31781527	-	ENST00000375663	Ψ2738	Ψ	Ψ12	5'-GGUGGCCCGGAΨGG-3'	((....))...... ( -0.40)	loop	mRNA	HEK293	Ψ-seq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	25219674	14	chr6:31781525-31781538	VARS1	HGNC:12651	ENSG00000204394	GGUGGCCCGGAUGG
hsa_pseudouridine_27	chrX	51901679	51901680	+	ENST00000375695	Ψ2408	Ψ	Ψ6	5'-GGGAAΨUGGAGAUGAGGCUGUGUCUGG-3'	.......(((.((......)).))).. ( -1.80)	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	27	chrX:51901675-51901701	MAGED1	HGNC:6813	ENSG00000179222	GGGAAUUGGAGAUGAGGCUGUGUCUGG
hsa_pseudouridine_28	chr6	30546272	30546273	-	ENST00000376621	Ψ1909	Ψ	Ψ13	5'-GGAGCUGGUGGUΨUUGCAGGGCAGGGUGG-3'	...(((..((......)).)))....... ( -3.30)	loop	mRNA	-	CeU-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	26075521	29	chr6:30546257-30546285	GNL1	HGNC:4413	ENSG00000204590	GGAGCUGGUGGUUUUGCAGGGCAGGGUGG
hsa_pseudouridine_29	chr13	32379416	32379417	+	ENST00000380152	Ψ9054	Ψ	Ψ18	5'-GGAAAUUAGGAAGGCCAΨGG-3'	........((....)).... ( -0.50)	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	20	chr13:32379400-32379419	BRCA2	HGNC:1101	ENSG00000139618	GGAAAUUAGGAAGGCCAUGG
hsa_pseudouridine_30	chr7	151242794	151242795	-	ENST00000392811	Ψ818	Ψ	Ψ14	5'-GGACCUCUUGGCAΨUUGAGAGGAAACUGG-3'	...(((((((.....)))))))....... ( -6.80)	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	29	chr7:151242780-151242808	SMARCD3	HGNC:11108	ENSG00000082014	GGACCUCUUGGCAUUUGAGAGGAAACUGG
hsa_pseudouridine_31	chr8	144464183	144464184	-	ENST00000403000	Ψ1110	Ψ	Ψ11	5'-GGGCCUUGGCΨGUAGGCAGCUGG-3'	.......(((((....))))).. ( -5.50)	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	23	chr8:144464172-144464194	TMEM276	HGNC:56235	ENSG00000291317	GGGCCUUGGCUGUAGGCAGCUGG
hsa_pseudouridine_32	chr19	1924281	1924282	+	ENST00000409472	Ψ853	Ψ	Ψ20	5'-GGGCAGUGGCCAGUGGCCUΨAGAGGG-3'	.......((((...))))........ ( -5.80)	bulge	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	26	chr19:1924263-1924288	SCAMP4	HGNC:30385	ENSG00000227500	GGGCAGUGGCCAGUGGCCUUAGAGGG
hsa_pseudouridine_33	chr6	26526714	26526715	+	ENST00000411553	Ψ5007	Ψ	Ψ4	5'-GGUΨGGCAGCAGAGGGG-3'	NA	loop	lncRNA	-	Ψ-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	25219674	17	chr6:26526712-26526728	HCG11	HGNC:17707	ENSG00000228223	GGUUGGCAGCAGAGGGG
hsa_pseudouridine_34	chr1	16535285	16535286	-	ENST00000415386	Ψ364	Ψ	Ψ21	5'-GGCCCGGGUUCGAUUCCCGGΨCAGGG-3'	((((.(((.......))))))).... ( -9.80)	loop	lncRNA	HeLa	DM-Ψ-seq:(High)	pqsfinder&qgrs:(Low)	RMVar database	31819270	26	chr1:16535281-16535306	LINC01783	HGNC:52573	ENSG00000233421	GGCCCGGGUUCGAUUCCCGGUCAGGG
hsa_pseudouridine_35	chr1	16535296	16535297	-	ENST00000415386	Ψ353	Ψ	Ψ10	5'-GGCCCGGGUΨCGAUUCCCGGUCAGGG-3'	((((.(((.......))))))).... ( -9.80)	loop	lncRNA	HEK293;cytosolic	Modomics:(Low);Ψ-seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	25219674;29106616	26	chr1:16535281-16535306	LINC01783	HGNC:52573	ENSG00000233421	GGCCCGGGUUCGAUUCCCGGUCAGGG
hsa_pseudouridine_36	chr12	111841696	111841697	-	ENST00000428207	Ψ1206	Ψ	Ψ9	5'-GGUAGCCGΨUUGGCGUCGUGAGGUAUGG-3'	....(((....))).............. ( -4.00)	loop	lncRNA	-	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database	26075521	28	chr12:111841678-111841705	MAPKAPK5-AS1	HGNC:24091	ENSG00000234608	GGUAGCCGUUUGGCGUCGUGAGGUAUGG
hsa_pseudouridine_37	chr7	2663633	2663634	+	ENST00000429448	Ψ3763	Ψ	Ψ5	5'-GGCCΨAGGGCCAGGAGAGAGG-3'	((((...)))).......... ( -6.30)	loop	mRNA	-	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database	26075521	21	chr7:2663630-2663650	TTYH3	HGNC:22222	ENSG00000136295	GGCCUAGGGCCAGGAGAGAGG
hsa_pseudouridine_38	chr17	81239576	81239577	+	ENST00000431388	Ψ140	Ψ	Ψ18	5'-GGGCCGAG^GCCGCGGCGΨACGG-3'	..((((......))))...... ( -6.60)	loop	mRNA	HEK293	Ψ-seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	25219674	22	chr17:81239440-81239447;81239568-81239581	NDUFAF8	HGNC:33551	ENSG00000224877	GGGCCGAGGCCGCGGCGUACGG
hsa_pseudouridine_39	chr1	16872635	16872636	+	ENST00000438002	Ψ1692	Ψ	Ψ10	5'-GGCCCGGGUΨCGAUUCCCGGCCAGGG-3'	((((.(((.......))))))).... (-12.50)	loop	lncRNA	cytosolic;HeLa	Modomics:(Low);DM-Ψ-seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	31819270;29106616	26	chr1:16872627-16872652	LINC03126	HGNC:57013	ENSG00000228549	GGCCCGGGUUCGAUUCCCGGCCAGGG
hsa_pseudouridine_40	chrX	48823352	48823353	+	ENST00000443563	Ψ3383	Ψ	Ψ9	5'-GGAGGCUGΨAGGAGG-3'	NA	loop	mRNA	293T	PRAISE:(High);CeU-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;36997645	36997645;26075521	15	chrX:48823345-48823359	HDAC6	HGNC:14064	ENSG00000094631	GGAGGCUGUAGGAGG
hsa_pseudouridine_41	chr12	21501356	21501357	-	ENST00000444129	Ψ279	Ψ	Ψ16	5'-GGCGAGGCCGGUCUGΨAGCGG-3'	(((...)))............ ( -3.00)	loop	mRNA	293T;HeLa	CeU-Seq:(High);BACS:(High);PRAISE:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;39349603;36997645	26075521;39349603;36997645	21	chr12:21501352-21501372	RECQL	HGNC:9948	ENSG00000004700	GGCGAGGCCGGUCUGUAGCGG
hsa_pseudouridine_42	chr6	28589390	28589391	+	ENST00000499525	Ψ518	Ψ	Ψ17	5'-GGUUGGUCCCAUGGUGΨAAUGG-3'	........((((......)))) ( -2.90)	loop	lncRNA	cytosolic;HeLa	Modomics:(Low);DM-Ψ-seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	31819270;23118484;29106616	22	chr6:28589375-28589396	ZBED9-AS1	HGNC:55596	ENSG00000246350	GGUUGGUCCCAUGGUGUAAUGG
hsa_pseudouridine_43	chr6	28589385	28589386	+	ENST00000499525	Ψ513	Ψ	Ψ12	5'-GGUUGGUCCCAΨGGUGUAAUGG-3'	........((((......)))) ( -2.90)	loop	lncRNA	HeLa	DM-Ψ-seq:(High)	pqsfinder&qgrs:(Low)	RMVar database	31819270	22	chr6:28589375-28589396	ZBED9-AS1	HGNC:55596	ENSG00000246350	GGUUGGUCCCAUGGUGUAAUGG
hsa_pseudouridine_44	chr5	135346022	135346023	-	ENST00000511689	Ψ926	Ψ	Ψ15	5'-GGUGGCAAGGAGUUΨGUGG-3'	....((((.....)))).. ( -0.60)	loop	mRNA	HeLa treatment: Sodium Bisulfite;treatment: Sodium Bisulfite sirna: Control siRNA	RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	30872485	19	chr5:135346019-135346037	MACROH2A1	HGNC:4740	ENSG00000113648	GGUGGCAAGGAGUUUGUGG
hsa_pseudouridine_45	chr11	44244375	44244376	+	ENST00000533608	Ψ2451	Ψ	Ψ4	5'-GGUΨAAGGGUGGAAGG-3'	NA	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	26075521	16	chr11:44244373-44244388	EXT2	HGNC:3513	ENSG00000151348	GGUUAAGGGUGGAAGG
hsa_pseudouridine_46	chr11	61356610	61356611	-	ENST00000537364	Ψ3650	Ψ	Ψ12	5'-GGCGUGGUGGCΨUUGCCUGG-3'	((((.((...)).))))... ( -4.40)	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	20	chr11:61356603-61356622	CYB561A3	HGNC:23014	ENSG00000162144	GGCGUGGUGGCUUUGCCUGG
hsa_pseudouridine_47	chr12	112022845	112022846	+	ENST00000546477	Ψ1376	Ψ	Ψ11	5'-GGUCUGGGGAΨAGCUGG-3'	...((((......)))) ( -0.80)	loop	mRNA	293T;HeLa	CeU-Seq:(High);BACS:(High);PRAISE:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;39349603;36997645	26075521	17	chr12:112022836-112022852	ERP29	HGNC:13799	ENSG00000089248	GGUCUGGGGAUAGCUGG
hsa_pseudouridine_48	chr12	56169839	56169840	-	ENST00000550164	Ψ2506	Ψ	Ψ4	5'-GGAΨGAGGAGAAAGGGAAAGAAGG-3'	NA	loop	mRNA	-	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database	26075521	24	chr12:56169820-56169843	SMARCC2	HGNC:11105	ENSG00000139613	GGAUGAGGAGAAAGGGAAAGAAGG
hsa_pseudouridine_49	chr15	40767598	40767599	+	ENST00000558467	Ψ676	Ψ	Ψ24	5'-GGGCCUGGGCCGAGGGCCUUGUGΨAGG-3'	((((((.......))))))........ ( -8.70)	bulge	mRNA	HEK293;293T;HeLa	BACS:(High);PRAISE:(High);CeU-Seq:(High);Ψ-seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;39349603;36997645;m6A-Atlas database	25219674;36997645;39349603;26075521	27	chr15:40767576-40767602	GCHFR	HGNC:4194	ENSG00000137880	GGGCCUGGGCCGAGGGCCUUGUGUAGG
hsa_pseudouridine_50	chr20	36046266	36046267	-	ENST00000565493	Ψ4752	Ψ	Ψ4	5'-GGUΨGGCAGCAGAGGGG-3'	NA	loop	lncRNA	HEK293	Ψ-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	25219674	17	chr20:36046254-36046270	NORAD	HGNC:44311	ENSG00000260032	GGUUGGCAGCAGAGGGG
hsa_pseudouridine_51	chr19	49980990	49980991	-	ENST00000599538	Ψ1905	Ψ	Ψ6	5'-GGCCCΨUCGUGGGACCCUGCGGUCACUGG-3'	(((((.....))).))............. ( -6.70)	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	29	chr19:49980968-49980996	VRK3	HGNC:18996	ENSG00000105053	GGCCCUUCGUGGGACCCUGCGGUCACUGG
hsa_pseudouridine_52	chr20	49279132	49279133	+	ENST00000620594	Ψ105	Ψ	Ψ14	5'-GGUACAGAAUGGAΨUUUGGAAGAGGG-3'	....(((((....)))))........ ( -1.00)	loop	lncRNA	293T;HeLa	CeU-Seq:(High);BACS:(High);PRAISE:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;39349603;36997645	26075521;39349603;36997645	26	chr20:49279120-49279145	ZFAS1	HGNC:33101	ENSG00000177410	GGUACAGAAUGGAUUUUGGAAGAGGG
hsa_pseudouridine_53	chrX	40599656	40599657	+	ENST00000636580	Ψ750	Ψ	Ψ13	5'-GGAGCUGGCAGGΨUUGG-3'	.(((((....))))).. ( -2.10)	loop	mRNA	HeLa treatment: Sodium Bisulfite	RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	30872485	17	chrX:40599645-40599661	ATP6AP2	HGNC:18305	ENSG00000182220	GGAGCUGGCAGGUUUGG
hsa_pseudouridine_54	chr12	29393998	29393999	+	ENST00000641955	Ψ4711	Ψ	Ψ4	5'-GGUΨGGCAGCAGAGGGG-3'	NA	loop	lncRNA	HEK293	Ψ-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	25219674	17	chr12:29393996-29394012	OVCH1-AS1	HGNC:44484	ENSG00000257599	GGUUGGCAGCAGAGGGG
hsa_pseudouridine_55	chr17	8226663	8226664	-	ENST00000651323	Ψ5190	Ψ	Ψ20	5'-GGCCGAGUGGUUAAGGCGAΨGG-3'	.(((..........)))..... ( -4.10)	loop	mRNA	-	Modomics:(Low)	pqsfinder&qgrs:(Low)	RMBase database	23118484	22	chr17:8226662-8226683	CTC1	HGNC:26169	ENSG00000178971	GGCCGAGUGGUUAAGGCGAUGG
hsa_pseudouridine_56	chr8	66113440	66113441	+	ENST00000660814	Ψ198	Ψ	Ψ11	5'-GGUCGCUGGUΨCGAUUCCGGCUCGAAGG-3'	....(((((.......)))))....... ( -7.20)	loop	lncRNA	HEK293;cytosolic;HeLa	Modomics:(Low);DM-Ψ-seq:(High);Ψ-seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	25219674;31819270;29106616	28	chr8:66113431-66113458	NA	NA	ENSG00000253190	GGUCGCUGGUUCGAUUCCGGCUCGAAGG
hsa_pseudouridine_57	chr9	128577154	128577155	+	ENST00000704203	Ψ1342	Ψ	Ψ4	5'-GGAΨUAAGGAAAAGGAGCAGUUAAUGG-3'	NA	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	27	chr9:128577152-128577178	SPTAN1	HGNC:11273	ENSG00000197694	GGAUUAAGGAAAAGGAGCAGUUAAUGG
hsa_pseudouridine_58	chr2	229797810	229797811	-	ENST00000704577	Ψ3783	Ψ	Ψ8	5'-GGUUGGAΨUAAGGAGCAGG-3'	NA	loop	mRNA	293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	19	chr2:229797800-229797818	TRIP12	HGNC:12306	ENSG00000153827	GGUUGGAUUAAGGAGCAGG
hsa_pseudouridine_59	chr2	24839968	24839969	-	ENST00000260600	Ψ2111	Ψ	Ψ21	5'-GGGGGUGCACACGGGCACCGΨGCUGGGGGGCGUCCUGGG-3'	...(((((......)))))...((((((....)))))). (-14.20)	loop	mRNA	NA	CeU-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	26075521	39	chr2:24839951-24839989	ADCY3	HGNC:234	ENSG00000138031	GGGGGUGCACACGGGCACCGUGCUGGGGGGCGUCCUGGG
hsa_pseudouridine_60	chr19	1010222	1010223	-	ENST00000356663	Ψ2117	Ψ	Ψ35	5'-GGGACUGCCCAGCCUGUGUCGGGGGCUUUCAGGGΨUUCGUGGGG-3'	..((..(((((((((.......)))))....)))).))...... (-12.00)	loop	mRNA	NA;293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	44	chr19:1010214-1010257	TMEM259	HGNC:17039	ENSG00000182087	GGGACUGCCCAGCCUGUGUCGGGGGCUUUCAGGGUUUCGUGGGG
hsa_pseudouridine_61	chr2	238238989	238238990	-	ENST00000409160	Ψ880	Ψ	Ψ22	5'-GGGGCGCUCCGGGAUCCCCAAΨACCCAGCCCCCCGGGUCCUGGGG-3'	((((..((...))..))))....((((((((...)))..))))). (-18.10)	loop	mRNA	NA;293T	CeU-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	26075521	45	chr2:238238967-238239011	HES6	HGNC:18254	ENSG00000144485	GGGGCGCUCCGGGAUCCCCAAUACCCAGCCCCCCGGGUCCUGGGG
hsa_pseudouridine_62	chr11	60923251	60923252	+	ENST00000227525	Ψ1938	Ψ	Ψ6	5'-GGCUCΨAGUGGAGGUGG-3'	..((((...)))).... ( -2.10)	loop	mRNA	293T;HeLa	BACS:(High);PRAISE:(High)	pqsfinder&qgrs:(Low)	39349603;36997645	39349603;36997645	17	chr11:60923247-60923263	TMEM109	HGNC:28771	ENSG00000110108	GGCUCUAGUGGAGGUGG
hsa_pseudouridine_63	chr12	57185612	57185613	+	ENST00000243077	Ψ7028	Ψ	Ψ28	5'-GGGCCGUGGGCAGCGGGCCUGCGCCUGΨGCCCACGGG-3'	...(((((((((.(((((....)))))))))))))). (-27.60)	loop	mRNA	293T	PRAISE:(High)	pqsfinder&qgrs:(Low)	36997645	36997645	37	chr12:57185586-57185622	LRP1	HGNC:6692	ENSG00000123384	GGGCCGUGGGCAGCGGGCCUGCGCCUGUGCCCACGGG
hsa_pseudouridine_64	chr2	113957528	113957529	+	ENST00000263238	Ψ1522	Ψ	Ψ4	5'-GGAΨGGCUGGUUUUGAGG-3'	NA	loop	mRNA	293T	PRAISE:(High)	pqsfinder&qgrs:(Low)	36997645	36997645	18	chr2:113957526-113957543	ACTR3	HGNC:170	ENSG00000115091	GGAUGGCUGGUUUUGAGG
hsa_pseudouridine_65	chr2	86504633	86504634	-	ENST00000263856	Ψ1934	Ψ	Ψ13	5'-GGCUGGGUGCGGΨGG-3'	.((((....)))).. ( -2.90)	loop	mRNA	293T	PRAISE:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	36997645	36997645	15	chr2:86504632-86504646	CHMP3	HGNC:29865	ENSG00000115561	GGCUGGGUGCGGUGG
hsa_pseudouridine_66	chr16	30423987	30423988	-	ENST00000319285	Ψ808	Ψ	Ψ3	5'-GGΨGAUGACGGGGGUACCAGGGG-3'	((((..........))))..... ( -2.00)	loop	mRNA	293T;HeLa	BACS:(High);PRAISE:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	39349603;36997645	39349603;36997645	23	chr16:30423968-30423990	DCTPP1	HGNC:28777	ENSG00000179958	GGUGAUGACGGGGGUACCAGGGG
hsa_pseudouridine_68	chrX	70301973	70301974	+	ENST00000374403	Ψ659	Ψ	Ψ19	5'-GGAACAGGGCAACAACUCΨAGGACUGUGG-3'	...((((................)))).. ( -2.50)	loop	mRNA	293T;HeLa	BACS:(High);PRAISE:(High)	pqsfinder&qgrs:(Low)	39349603;36997645	39349603;36997645	29	chrX:70301956-70301984	KIF4A	HGNC:13339	ENSG00000090889	GGAACAGGGCAACAACUCUAGGACUGUGG
hsa_pseudouridine_69	chr6	3140443	3140444	+	ENST00000380379	Ψ753	Ψ	Ψ3	5'-GGΨGAGAAGGAUCCUCUGGUCCCACGG-3'	.(((....(((((....)))))))).. ( -6.10)	loop	mRNA	293T	PRAISE:(High)	pqsfinder&qgrs:(Low)	36997645	36997645	27	chr6:3140442-3140468	BPHL	HGNC:1094	ENSG00000137274	GGUGAGAAGGAUCCUCUGGUCCCACGG
hsa_pseudouridine_70	chr22	43159337	43159338	+	ENST00000396265	Ψ415	Ψ	Ψ19	5'-GGCGAGGGUCUCCGCUGGΨACGCCGG-3'	((((..(((....)))....)))).. ( -7.00)	loop	mRNA	293T	PRAISE:(High)	pqsfinder&qgrs:(Low)	36997645	36997645	26	chr22:43159320-43159345	TSPO	HGNC:1158	ENSG00000100300	GGCGAGGGUCUCCGCUGGUACGCCGG
hsa_pseudouridine_72	chr6	136260234	136260235	-	ENST00000531224	Ψ3886	Ψ	Ψ13	5'-GGGGUUGGUAUGΨAGG-3'	NA	loop	mRNA	293T	PRAISE:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	36997645	36997645	16	chr6:136260232-136260247	BCLAF1	HGNC:16863	ENSG00000029363	GGGGUUGGUAUGUAGG
hsa_pseudouridine_74	chr6	131868046	131868047	+	ENST00000647893	Ψ1210	Ψ	Ψ10	5'-GGUUGAUGGΨAUGGUUGG-3'	NA	loop	mRNA	293T	PRAISE:(High)	pqsfinder&qgrs:(Low)	36997645	36997645	18	chr6:131868038-131868055	ENPP1	HGNC:3356	ENSG00000197594	GGUUGAUGGUAUGGUUGG
hsa_pseudouridine_75	chr17	39202989	39202990	+	ENST00000678573	Ψ938	Ψ	Ψ17	5'-GGCACAUGGGCAUAG^GΨAAGCGG-3'	.........((........)).. ( -1.00)	loop	mRNA	293T	PRAISE:(High)	pqsfinder&qgrs:(Low)	36997645	36997645	23	chr17:39202425-39202439;39202989-39202996	RPL19	HGNC:10312	ENSG00000108298	GGCACAUGGGCAUAGGUAAGCGG
hsa_pseudouridine_76	chr22	50456671	50456672	-	ENST00000689129	Ψ4062	Ψ	Ψ12	5'-GGCAGUCACG^GΨAAGUGGGGCAGUGUCCGG-3'	......(((.....)))((((...)))).. ( -5.90)	loop	mRNA	293T	PRAISE:(High)	pqsfinder&qgrs:(Low)	36997645	36997645	30	chr22:50456654-50456673;50459255-50459264	SBF1	HGNC:10542	ENSG00000100241	GGCAGUCACGGUAAGUGGGGCAGUGUCCGG
hsa_pseudouridine_77	chr9	128575244	128575245	+	ENST00000704203	Ψ1081	Ψ	Ψ20	5'-GGCCAGGAUCUGGAGCAUGΨAGAGG-3'	..((((...))))............ ( -3.40)	loop	mRNA	293T	PRAISE:(High)	pqsfinder&qgrs:(Low)	36997645	36997645	25	chr9:128575226-128575250	SPTAN1	HGNC:11273	ENSG00000197694	GGCCAGGAUCUGGAGCAUGUAGAGG
hsa_pseudouridine_78	chr16	1361948	1361949	+	ENST00000204679	Ψ346	Ψ	Ψ5	5'-GGGAΨCCUCGG^CAUCUGGCACGAGUGGG-3'	....((((((((.....)).)))).)). ( -6.60)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	28	chr16:1361945-1361955;1362038-1362054	GNPTG	HGNC:23026	ENSG00000090581	GGGAUCCUCGGCAUCUGGCACGAGUGGG
hsa_pseudouridine_79	chr16	1362081	1362082	+	ENST00000204679	Ψ397	Ψ	Ψ6	5'-GGGCAΨGUGGAUGAGGGACGG-3'	...(((....)))........ ( -0.40)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	39349603	39349603	21	chr16:1362077-1362097	GNPTG	HGNC:23026	ENSG00000090581	GGGCAUGUGGAUGAGGGACGG
hsa_pseudouridine_81	chr14	60156100	60156101	-	ENST00000216500	Ψ641	Ψ	Ψ5	5'-GGAAΨUGGUGAGGAGCUGG-3'	......(((.....))).. ( -0.10)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	19	chr14:60156087-60156105	DHRS7	HGNC:21524	ENSG00000100612	GGAAUUGGUGAGGAGCUGG
hsa_pseudouridine_82	chr10	88941380	88941381	-	ENST00000224784	Ψ530	Ψ	Ψ11	5'-G^GCAUCGUGCΨGGACUCUGGAGAUGG-3'	..((((...((((...)))).)))). ( -3.20)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	26	chr10:88941366-88941390;88941785-88941785	ACTA2	HGNC:130	ENSG00000107796	GGCAUCGUGCUGGACUCUGGAGAUGG
hsa_pseudouridine_83	chr6	149853120	149853121	-	ENST00000239367	Ψ992	Ψ	Ψ15	5'-GGCUGGGCAGGAUGΨGG-3'	NA	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	39349603	39349603	17	chr6:149853119-149853135	LRP11	HGNC:16936	ENSG00000120256	GGCUGGGCAGGAUGUGG
hsa_pseudouridine_84	chr7	158734467	158734468	-	ENST00000251527	Ψ2656	Ψ	Ψ18	5'-GGCUCCUUGGCAAA^GUAΨUGGUUGCUCUGG-3'	....((..(((((........)))))..)) ( -5.50)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	30	chr7:158734456-158734471;158735503-158735516	ESYT2	HGNC:22211	ENSG00000117868	GGCUCCUUGGCAAAGUAUUGGUUGCUCUGG
hsa_pseudouridine_85	chr2	1744496	1744497	-	ENST00000252804	Ψ19	Ψ	Ψ12	5'-GGAGCCGGCCGΨGGUGG-3'	...((((....)))).. ( -2.70)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	17	chr2:1744492-1744508	PXDN	HGNC:14966	ENSG00000130508	GGAGCCGGCCGUGGUGG
hsa_pseudouridine_87	chr12	64759153	64759154	-	ENST00000258145	Ψ253	Ψ	Ψ31	5'-GGGCGGCUGCCUGGGGGUCUUCGGGGUGGCΨGCGGG-3'	..((((((((((.((.....)).))))))))))... (-19.30)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs;G4hunter score>=1.2;G4RNA screener:(High)	39349603	39349603	36	chr12:64759149-64759184	GNS	HGNC:4422	ENSG00000135677	GGGCGGCUGCCUGGGGGUCUUCGGGGUGGCUGCGGG
hsa_pseudouridine_88	chr2	135868800	135868801	-	ENST00000264156	Ψ503	Ψ	Ψ10	5'-GGCAGGUGGΨGCGG-3'	.(((.....))).. ( -2.50)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	39349603	39349603	14	chr2:135868797-135868810	MCM6	HGNC:6949	ENSG00000076003	GGCAGGUGGUGCGG
hsa_pseudouridine_89	chr5	7877969	7877970	+	ENST00000264668	Ψ539	Ψ	Ψ15	5'-GGUUGAGCCGUGGAΨUGCUGGACUCUGG-3'	((((.(((........))).)))).... ( -6.70)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	28	chr5:7877956-7877983	MTRR	HGNC:7473	ENSG00000124275	GGUUGAGCCGUGGAUUGCUGGACUCUGG
hsa_pseudouridine_90	chr7	116953594	116953595	+	ENST00000265437	Ψ269	Ψ	Ψ3	5'-GGΨCUUGGACGUAUCUGUGGACCGUGUGG-3'	(((((.(((....)))..)))))...... ( -7.70)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	29	chr7:116953593-116953621	ST7	HGNC:11351	ENSG00000004866	GGUCUUGGACGUAUCUGUGGACCGUGUGG
hsa_pseudouridine_91	chr7	73686664	73686665	+	ENST00000265758	Ψ145	Ψ	Ψ4	5'-GGAΨGGCUGGGCGAGCAUUGG-3'	.....(((.....)))..... ( -2.70)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	21	chr7:73686662-73686682	BUD23	HGNC:16405	ENSG00000071462	GGAUGGCUGGGCGAGCAUUGG
hsa_pseudouridine_92	chr11	10525350	10525351	-	ENST00000265981	Ψ388	Ψ	Ψ8	5'-GGCAUUGΨGGAGGCAUCACGG-3'	.....(((((.....))))). ( -1.80)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	21	chr11:10525338-10525358	RNF141	HGNC:21159	ENSG00000110315	GGCAUUGUGGAGGCAUCACGG
hsa_pseudouridine_93	chr3	50358491	50358492	-	ENST00000266025	Ψ1030	Ψ	Ψ6	5'-GGCGCΨGGCUUCCUAUGGCUUCGG-3'	..((..((((......)))).)). ( -4.70)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	24	chr3:50358474-50358497	TMEM115	HGNC:30055	ENSG00000126062	GGCGCUGGCUUCCUAUGGCUUCGG
hsa_pseudouridine_94	chr4	57040893	57040894	-	ENST00000295666	Ψ549	Ψ	Ψ15	5'-GGACAUCUGGAAUGΨCACUGGUGCCCAGG-3'	.(((((.....))))).((((...)))). ( -7.40)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	29	chr4:57040880-57040908	IGFBP7	HGNC:5476	ENSG00000163453	GGACAUCUGGAAUGUCACUGGUGCCCAGG
hsa_pseudouridine_95	chr2	110672758	110672759	-	ENST00000302759	Ψ392	Ψ	Ψ11	5'-GGGCGGGGCAΨCUGGAAGCCCAAGG-3'	.....((((........)))).... ( -7.40)	bulge	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	25	chr2:110672745-110672769	BUB1	HGNC:1148	ENSG00000169679	GGGCGGGGCAUCUGGAAGCCCAAGG
hsa_pseudouridine_96	chr9	124869267	124869268	+	ENST00000353214	Ψ1230	Ψ	Ψ20	5'-GGCCGCGAGCGGAGCCGGCΨGAGCGG-3'	..((((.(((.......)))..)))) ( -9.30)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	26	chr9:124869249-124869274	ARPC5L	HGNC:23366	ENSG00000136950	GGCCGCGAGCGGAGCCGGCUGAGCGG
hsa_pseudouridine_97	chr9	137113282	137113283	-	ENST00000371579	Ψ646	Ψ	Ψ18	5'-GGACGUCACGGCG^GACUΨUGAGG-3'	....(((......)))....... ( -2.00)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	23	chr9:137113278-137113287;137113361-137113373	DPP7	HGNC:14892	ENSG00000176978	GGACGUCACGGCGGACUUUGAGG
hsa_pseudouridine_98	chr20	45897783	45897784	+	ENST00000372484	Ψ2358	Ψ	Ψ14	5'-GGGGAUGAGUGGUΨUGUGG-3'	NA	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	39349603	39349603	19	chr20:45897771-45897789	CTSA	HGNC:9251	ENSG00000064601	GGGGAUGAGUGGUUUGUGG
hsa_pseudouridine_99	chr9	113221565	113221566	+	ENST00000374212	Ψ23	Ψ	Ψ9	5'-GGUGGCGGΨGG-3'	NA	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	39349603	39349603	11	chr9:113221558-113221568	SLC31A1	HGNC:11016	ENSG00000136868	GGUGGCGGUGG
hsa_pseudouridine_100	chr1	19357509	19357510	-	ENST00000375144	Ψ482	Ψ	Ψ18	5'-GGAUCUGGAUCAUGGCUΨUGCUGG-3'	.............(((...))).. ( -0.40)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	24	chr1:19357504-19357527	CAPZB	HGNC:1491	ENSG00000077549	GGAUCUGGAUCAUGGCUUUGCUGG
hsa_pseudouridine_101	chr13	91728542	91728543	+	ENST00000377067	Ψ1458	Ψ	Ψ19	5'-GGAACAG^GUAAAUAGGAUΨUGUGG-3'	...((((((.......)))))).. ( -1.90)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	24	chr13:91693875-91693881;91728532-91728548	GPC5	HGNC:4453	ENSG00000179399	GGAACAGGUAAAUAGGAUUUGUGG
hsa_pseudouridine_102	chr10	71817047	71817048	-	ENST00000394936	Ψ1998	Ψ	Ψ22	5'-GGGCACUGGUGGGCCUGGGCUΨCUGAGG-3'	((((........))))............ ( -4.90)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	39349603	39349603	28	chr10:71817042-71817069	PSAP	HGNC:9498	ENSG00000197746	GGGCACUGGUGGGCCUGGGCUUCUGAGG
hsa_pseudouridine_103	chr4	6621749	6621750	+	ENST00000505907	Ψ7068	Ψ	Ψ6	5'-GGGCUΨGGCUCUGCCACAGGGCAGGAG-3'	.........((((((....)))))).. ( -8.70)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	27	chr4:6621745-6621771	MAN2B2	HGNC:29623	ENSG00000013288	GGGCUUGGCUCUGCCACAGGGCAGGAG
hsa_pseudouridine_67	chr16	83602512	83602513	+	ENST00000567109	Ψ1144	Ψ	Ψ13	5'-GGCUGGACUGGAΨGUUGG-3'	.....(((.....))).. ( -0.20)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	18	chr16:83602501-83602518	CDH13	HGNC:1753	ENSG00000140945	GGCUGGACUGGAUGUUGG
hsa_pseudouridine_71	chrX	40599657	40599658	+	ENST00000636580	Ψ751	Ψ	Ψ14	5'-GGAGCUGGCAGGUΨUGG-3'	.(((((....))))).. ( -2.10)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	17	chrX:40599645-40599661	ATP6AP2	HGNC:18305	ENSG00000182220	GGAGCUGGCAGGUUUGG
hsa_pseudouridine_73	chr4	39454597	39454598	-	ENST00000645496	Ψ716	Ψ	Ψ15	5'-GGAUAUCAGGAAAUΨUUUGGAUGG-3'	......(((((...)))))..... ( -0.10)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	24	chr4:39454589-39454612	RPL9	HGNC:10369	ENSG00000163682	GGAUAUCAGGAAAUUUUUGGAUGG
hsa_pseudouridine_80	chr18	688584	688585	-	ENST00000647584	Ψ685	Ψ	Ψ4	5'-GGAΨGGCUGGACCAG^G-3'	...(((.....))).. ( -1.10)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	16	chr18:686008-686008;688574-688588	ENOSF1	HGNC:30365	ENSG00000132199	GGAUGGCUGGACCAGG
hsa_pseudouridine_86	chr19	49491456	49491457	+	ENST00000678510	Ψ442	Ψ	Ψ13	5'-GGCUCACGAGGUΨGGCUGG-3'	((((.((...)).)))).. ( -2.70)	loop	mRNA	HeLa	BACS:(High)	pqsfinder&qgrs:(Low)	39349603	39349603	19	chr19:49491445-49491463	RPL13A	HGNC:10304	ENSG00000142541	GGCUCACGAGGUUGGCUGG
