id	chromosome	start	end	strand	transcript	site_in_transcript	modification	site_in_pqs	pqs	Optimal_secondary_structure	site_type	RNAtype	biological_source	modification_method	rG4_method	source	publication	PQS_length	PQS_range	symbol	Xgnc_id	ensembl_id	raw_PQS
hsa_m5C_1	chr19	35755513	35755514	-	ENST00000004982	C512	m5C	C9	5'-GGAGGGGGCUGG-3'	NA	loop	mRNA	MRC-5;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	12	chr19:35755511-35755522	HSPB6	HGNC:26511	ENSG00000004776	GGAGGGGGCUGG
hsa_m5C_2	chr17	7229935	7229936	-	ENST00000005340	C783	m5C	C5	5'-GGGGCCACAGGACUGG-3'	....(((......))) ( -0.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	16	chr17:7229925-7229940	DVL2	HGNC:3086	ENSG00000004975	GGGGCCACAGGACUGG
hsa_m5C_3	chr17	7229934	7229935	-	ENST00000005340	C784	m5C	C6	5'-GGGGCCACAGGACUGG-3'	....(((......))) ( -0.40)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	16	chr17:7229925-7229940	DVL2	HGNC:3086	ENSG00000004975	GGGGCCACAGGACUGG
hsa_m5C_4	chr19	45163145	45163146	-	ENST00000006275	C587	m5C	C9	5'-GGCCUCACCGGCCUCAGGAGACGG-3'	((((.....))))........... ( -6.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr19:45163131-45163154	TRAPPC6A	HGNC:23069	ENSG00000007255	GGCCUCACCGGCCUCAGGAGACGG
hsa_m5C_5	chr7	130381634	130381635	+	ENST00000011292	C180	m5C	C4	5'-GGACUUCUGGCGGGG-3'	...((((....)))) ( -0.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr7:130381632-130381646	CPA1	HGNC:2296	ENSG00000091704	GGACUUCUGGCGGGG
hsa_m5C_6	chr7	130381637	130381638	+	ENST00000011292	C183	m5C	C7	5'-GGACUUCUGGCGGGG-3'	...((((....)))) ( -0.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr7:130381632-130381646	CPA1	HGNC:2296	ENSG00000091704	GGACUUCUGGCGGGG
hsa_m5C_7	chr7	130381641	130381642	+	ENST00000011292	C187	m5C	C11	5'-GGACUUCUGGCGGGG-3'	...((((....)))) ( -0.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr7:130381632-130381646	CPA1	HGNC:2296	ENSG00000091704	GGACUUCUGGCGGGG
hsa_m5C_8	chr3	42590881	42590882	+	ENST00000011691	C23	m5C	C14	5'-GGCGGUCGUGGUUCCGG-3'	..(((........))). ( -3.20)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	17	chr3:42590869-42590885	SS18L2	HGNC:15593	ENSG00000008324	GGCGGUCGUGGUUCCGG
hsa_m5C_9	chr19	45692861	45692862	+	ENST00000012049	C197	m5C	C5	5'-GGAGCGGCUGGCACCGCAGG-3'	...((((......))))... ( -6.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	20	chr19:45692858-45692877	QPCTL	HGNC:25952	ENSG00000011478	GGAGCGGCUGGCACCGCAGG
hsa_m5C_10	chr19	45703851	45703852	+	ENST00000012049	C1990	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr19:45703847-45703861	QPCTL	HGNC:25952	ENSG00000011478	GGAGGCUGAGGCAGG
hsa_m5C_11	chr19	45703857	45703858	+	ENST00000012049	C1996	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr19:45703847-45703861	QPCTL	HGNC:25952	ENSG00000011478	GGAGGCUGAGGCAGG
hsa_m5C_12	chr8	58659674	58659675	-	ENST00000038176	C179	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	11	chr8:58659673-58659683	NSMAF	HGNC:8017	ENSG00000035681	GGCGGCGGCGG
hsa_m5C_13	chr7	74231828	74231829	-	ENST00000055077	C1358	m5C	C11	5'-GGUGUGGUGGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	13	chr7:74231827-74231839	RFC2	HGNC:9970	ENSG00000049541	GGUGUGGUGGCGG
hsa_m5C_14	chr11	73391199	73391200	+	ENST00000064780	C470	m5C	C7	5'-GGGCACCUCUGGGUACUCAUGGCUGUGAUG^AG-3'	(((.(((....))).))).............. ( -5.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	32	chr11:73391194-73391223;73392211-73392212	RELT	HGNC:13764	ENSG00000054967	GGGCACCUCUGGGUACUCAUGGCUGUGAUGAG
hsa_m5C_15	chr12	32843223	32843224	-	ENST00000070846	C1514	m5C	C17	5'-GGGAGGCCAAGGCGGGCGGAUCACG-3'	((...(((......)))...))... ( -5.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr12:32843216-32843240	PKP2	HGNC:9024	ENSG00000057294	GGGAGGCCAAGGCGGGCGGAUCACG
hsa_m5C_16	chr19	3094591	3094592	+	ENST00000078429	C231	m5C	C3	5'-GGCCGGGCCGGGGGCCGGGGGGCGGCGGCGGG-3'	..((..((((...(((....)))..)))).)) (-13.80)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	32	chr19:3094590-3094621	GNA11	HGNC:4379	ENSG00000088256	GGCCGGGCCGGGGGCCGGGGGGCGGCGGCGGG
hsa_m5C_17	chr19	3094596	3094597	+	ENST00000078429	C236	m5C	C8	5'-GGCCGGGCCGGGGGCCGGGGGGCGGCGGCGGG-3'	..((..((((...(((....)))..)))).)) (-13.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	32	chr19:3094590-3094621	GNA11	HGNC:4379	ENSG00000088256	GGCCGGGCCGGGGGCCGGGGGGCGGCGGCGGG
hsa_m5C_18	chr19	3094597	3094598	+	ENST00000078429	C237	m5C	C9	5'-GGCCGGGCCGGGGGCCGGGGGGCGGCGGCGGG-3'	..((..((((...(((....)))..)))).)) (-13.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	32	chr19:3094590-3094621	GNA11	HGNC:4379	ENSG00000088256	GGCCGGGCCGGGGGCCGGGGGGCGGCGGCGGG
hsa_m5C_19	chr12	47793548	47793549	-	ENST00000080059	C1616	m5C	C14	5'-GGCUGGGCGGCUCCCCCGGGGCAGCACCGG-3'	..((((((.(((((...))))).)).)))) (-14.30)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	30	chr12:47793533-47793562	HDAC7	HGNC:14067	ENSG00000061273	GGCUGGGCGGCUCCCCCGGGGCAGCACCGG
hsa_m5C_20	chr12	47793547	47793548	-	ENST00000080059	C1617	m5C	C15	5'-GGCUGGGCGGCUCCCCCGGGGCAGCACCGG-3'	..((((((.(((((...))))).)).)))) (-14.30)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	30	chr12:47793533-47793562	HDAC7	HGNC:14067	ENSG00000061273	GGCUGGGCGGCUCCCCCGGGGCAGCACCGG
hsa_m5C_21	chr12	47793535	47793536	-	ENST00000080059	C1629	m5C	C27	5'-GGCUGGGCGGCUCCCCCGGGGCAGCACCGG-3'	..((((((.(((((...))))).)).)))) (-14.30)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	30	chr12:47793533-47793562	HDAC7	HGNC:14067	ENSG00000061273	GGCUGGGCGGCUCCCCCGGGGCAGCACCGG
hsa_m5C_22	chr12	47793534	47793535	-	ENST00000080059	C1630	m5C	C28	5'-GGCUGGGCGGCUCCCCCGGGGCAGCACCGG-3'	..((((((.(((((...))))).)).)))) (-14.30)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	30	chr12:47793533-47793562	HDAC7	HGNC:14067	ENSG00000061273	GGCUGGGCGGCUCCCCCGGGGCAGCACCGG
hsa_m5C_23	chr17	7350981	7350982	+	ENST00000158762	C2311	m5C	C9	5'-GGCUGAAGCGGCCCAGGGGCAGGCAG^G-3'	.......((.(((....)))..))... ( -5.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr17:7350974-7350999;7351295-7351295	ACAP1	HGNC:16467	ENSG00000072818	GGCUGAAGCGGCCCAGGGGCAGGCAGG
hsa_m5C_24	chr19	17328335	17328336	-	ENST00000159087	C2237	m5C	C6	5'-GGGGGCGAGGGCCGAGACCAGGGGCCCGACGGGGG-3'	.....((.(((((.........)))))..)).... (-11.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	35	chr19:17328307-17328341	ANO8	HGNC:29329	ENSG00000074855	GGGGGCGAGGGCCGAGACCAGGGGCCCGACGGGGG
hsa_m5C_25	chr16	75235552	75235553	-	ENST00000162330	C1488	m5C	C9	5'-GGCAGGGCCGGGCCGGG-3'	(((........)))... ( -4.30)	loop	mRNA	Testis;HeLa	UBS-seq:(High);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	31061524;38168991	17	chr16:75235545-75235561	BCAR1	HGNC:971	ENSG00000050820	GGCAGGGCCGGGCCGGG
hsa_m5C_26	chr3	48660723	48660724	-	ENST00000164024	C2163	m5C	C4	5'-GGCCAGCAUCCAGGUGGUGG-3'	..(((.(((....))).))) ( -5.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr3:48660708-48660727	CELSR3	HGNC:3230	ENSG00000008300	GGCCAGCAUCCAGGUGGUGG
hsa_m5C_27	chr3	48660720	48660721	-	ENST00000164024	C2166	m5C	C7	5'-GGCCAGCAUCCAGGUGGUGG-3'	..(((.(((....))).))) ( -5.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr3:48660708-48660727	CELSR3	HGNC:3230	ENSG00000008300	GGCCAGCAUCCAGGUGGUGG
hsa_m5C_28	chr3	48660717	48660718	-	ENST00000164024	C2169	m5C	C10	5'-GGCCAGCAUCCAGGUGGUGG-3'	..(((.(((....))).))) ( -5.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr3:48660708-48660727	CELSR3	HGNC:3230	ENSG00000008300	GGCCAGCAUCCAGGUGGUGG
hsa_m5C_29	chr3	48660756	48660757	-	ENST00000164024	C2130	m5C	C16	5'-GGCGCAGGAUGCUGGCCGG-3'	(((.(((....)))))).. ( -8.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr3:48660754-48660772	CELSR3	HGNC:3230	ENSG00000008300	GGCGCAGGAUGCUGGCCGG
hsa_m5C_30	chr3	48660755	48660756	-	ENST00000164024	C2131	m5C	C17	5'-GGCGCAGGAUGCUGGCCGG-3'	(((.(((....)))))).. ( -8.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr3:48660754-48660772	CELSR3	HGNC:3230	ENSG00000008300	GGCGCAGGAUGCUGGCCGG
hsa_m5C_31	chr19	44758748	44758749	+	ENST00000164227	C1168	m5C	C9	5'-GGGGAAGGCCACCCGG-3'	(((........))).. ( -5.30)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr19:44758741-44758756	BCL3	HGNC:998	ENSG00000069399	GGGGAAGGCCACCCGG
hsa_m5C_32	chr19	44758749	44758750	+	ENST00000164227	C1169	m5C	C10	5'-GGGGAAGGCCACCCGG-3'	(((........))).. ( -5.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	16	chr19:44758741-44758756	BCL3	HGNC:998	ENSG00000069399	GGGGAAGGCCACCCGG
hsa_m5C_33	chr14	76779526	76779527	+	ENST00000167106	C2961	m5C	C13	5'-GGGAAAGGGAAGCAGGGUAGG-3'	NA	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	21	chr14:76779515-76779535	VASH1	HGNC:19964	ENSG00000071246	GGGAAAGGGAAGCAGGGUAGG
hsa_m5C_34	chr19	1817769	1817770	-	ENST00000170168	C3152	m5C	C20	5'-GGAACCGGG^UGGCCGGAGGCUGG-3'	....((((....))))....... ( -6.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr19:1817767-1817780;1818482-1818490	REXO1	HGNC:24616	ENSG00000079313	GGAACCGGGUGGCCGGAGGCUGG
hsa_m5C_35	chr19	33095815	33095816	+	ENST00000170564	C621	m5C	C17	5'-GGAAGCUCGGAAGGAUCUGAG^G-3'	.....((((((....)))))). ( -6.50)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr19:33095800-33095820;33096207-33096207	GPATCH1	HGNC:24658	ENSG00000076650	GGAAGCUCGGAAGGAUCUGAGG
hsa_m5C_36	chr2	130374509	130374510	+	ENST00000175756	C2721	m5C	C18	5'-GGCCCAUGGUAGGGUUCCUGCUAGG-3'	...((.(((((((...))))))))) ( -8.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr2:130374493-130374517	PTPN18	HGNC:9649	ENSG00000072135	GGCCCAUGGUAGGGUUCCUGCUAGG
hsa_m5C_37	chr10	14520892	14520893	-	ENST00000181796	C1452	m5C	C17	5'-GGAAAAAGGAAGAGGACACUGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr10:14520888-14520909	FAM107B	HGNC:23726	ENSG00000065809	GGAAAAAGGAAGAGGACACUGG
hsa_m5C_38	chr7	39950936	39950937	+	ENST00000181839	C682	m5C	C14	5'-GGCAAGAGGCGCGCAGG-3'	.((.....))....... ( -0.70)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	17	chr7:39950924-39950940	CDK13	HGNC:1733	ENSG00000065883	GGCAAGAGGCGCGCAGG
hsa_m5C_39	chr6	52577018	52577019	-	ENST00000182527	C42	m5C	C8	5'-GGGAGAGCGGGCGGCGGGCCGGCGGG-3'	......((.(((.....))).))... ( -9.60)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database	28418038	26	chr6:52577001-52577026	TRAM2	HGNC:16855	ENSG00000065308	GGGAGAGCGGGCGGCGGGCCGGCGGG
hsa_m5C_40	chr19	16688756	16688757	+	ENST00000187762	C1365	m5C	C6	5'-GGAGGCCGAGGCGG-3'	....((....)).. ( -1.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr19:16688752-16688765	TMEM38A	HGNC:28462	ENSG00000072954	GGAGGCCGAGGCGG
hsa_m5C_41	chr19	16688757	16688758	+	ENST00000187762	C1366	m5C	C7	5'-GGAGGCCGAGGCGG-3'	....((....)).. ( -1.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr19:16688752-16688765	TMEM38A	HGNC:28462	ENSG00000072954	GGAGGCCGAGGCGG
hsa_m5C_42	chr19	16528192	16528193	-	ENST00000198939	C1262	m5C	C10	5'-GGAGGGGUCCAGG-3'	(((....)))... ( -2.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	13	chr19:16528190-16528202	CHERP	HGNC:16930	ENSG00000085872	GGAGGGGUCCAGG
hsa_m5C_43	chr7	100868681	100868682	+	ENST00000200457	C662	m5C	C16	5'-GGGGCUGCGGCCCACCCAGGCGGG-3'	.((((....)))).(((....))) (-11.60)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038;31061524	24	chr7:100868667-100868690	TRIP6	HGNC:12311	ENSG00000087077	GGGGCUGCGGCCCACCCAGGCGGG
hsa_m5C_44	chr7	100868682	100868683	+	ENST00000200457	C663	m5C	C17	5'-GGGGCUGCGGCCCACCCAGGCGGG-3'	.((((....)))).(((....))) (-11.60)	loop	mRNA	293T;HeLa	UBS-seq:(High);m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;38168991	24	chr7:100868667-100868690	TRIP6	HGNC:12311	ENSG00000087077	GGGGCUGCGGCCCACCCAGGCGGG
hsa_m5C_45	chr17	44780060	44780061	+	ENST00000200557	C2829	m5C	C6	5'-GGGGGCGCCUGGAGG-3'	(((....)))..... ( -2.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr17:44780056-44780070	ADAM11	HGNC:189	ENSG00000073670	GGGGGCGCCUGGAGG
hsa_m5C_46	chr20	56631553	56631554	+	ENST00000201031	C637	m5C	C11	5'-GGGCUGGAGGCGGGCGCGG-3'	..(((.......))).... ( -2.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	19	chr20:56631544-56631562	TFAP2C	HGNC:11744	ENSG00000087510	GGGCUGGAGGCGGGCGCGG
hsa_m5C_47	chr20	56631557	56631558	+	ENST00000201031	C641	m5C	C15	5'-GGGCUGGAGGCGGGCGCGG-3'	..(((.......))).... ( -2.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	19	chr20:56631544-56631562	TFAP2C	HGNC:11744	ENSG00000087510	GGGCUGGAGGCGGGCGCGG
hsa_m5C_48	chr20	56631559	56631560	+	ENST00000201031	C643	m5C	C17	5'-GGGCUGGAGGCGGGCGCGG-3'	..(((.......))).... ( -2.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	19	chr20:56631544-56631562	TFAP2C	HGNC:11744	ENSG00000087510	GGGCUGGAGGCGGGCGCGG
hsa_m5C_49	chr19	40600121	40600122	+	ENST00000204005	C285	m5C	C20	5'-GGCCCCGGGGGCCAGGGGGCCGG-3'	((((((.........)))))).. (-14.30)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr19:40600103-40600125	LTBP4	HGNC:6717	ENSG00000090006	GGCCCCGGGGGCCAGGGGGCCGG
hsa_m5C_50	chr19	40600122	40600123	+	ENST00000204005	C286	m5C	C21	5'-GGCCCCGGGGGCCAGGGGGCCGG-3'	((((((.........)))))).. (-14.30)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr19:40600103-40600125	LTBP4	HGNC:6717	ENSG00000090006	GGCCCCGGGGGCCAGGGGGCCGG
hsa_m5C_51	chr19	40605147	40605148	+	ENST00000204005	C454	m5C	C10	5'-GGCGCCCGGCCCCCGGCCCCGG-3'	((.(((.((...))))).)).. ( -7.70)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	22	chr19:40605139-40605160	LTBP4	HGNC:6717	ENSG00000090006	GGCGCCCGGCCCCCGGCCCCGG
hsa_m5C_52	chr15	65133478	65133479	-	ENST00000204549	C330	m5C	C6	5'-GGGACCGACGCCGGCGAGCGGCCGCGG-3'	....(((..((((.....))))..))) (-11.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr15:65133458-65133484	PDCD7	HGNC:8767	ENSG00000090470	GGGACCGACGCCGGCGAGCGGCCGCGG
hsa_m5C_53	chr15	65117786	65117787	-	ENST00000204549	C2415	m5C	C8	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr15:65117780-65117794	PDCD7	HGNC:8767	ENSG00000090470	GGGAGGCCGAGGCGG
hsa_m5C_54	chr15	65117781	65117782	-	ENST00000204549	C2420	m5C	C13	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr15:65117780-65117794	PDCD7	HGNC:8767	ENSG00000090470	GGGAGGCCGAGGCGG
hsa_m5C_55	chr15	65117643	65117644	-	ENST00000204549	C2558	m5C	C14	5'-GGGGAGGCUGAGGCAGG-3'	......((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr15:65117641-65117657	PDCD7	HGNC:8767	ENSG00000090470	GGGGAGGCUGAGGCAGG
hsa_m5C_56	chr12	132770752	132770753	-	ENST00000204726	C7575	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr12:132770744-132770758	GOLGA3	HGNC:4426	ENSG00000090615	GGAGGCUGAGGCAGG
hsa_m5C_57	chr12	132770746	132770747	-	ENST00000204726	C7581	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	15	chr12:132770744-132770758	GOLGA3	HGNC:4426	ENSG00000090615	GGAGGCUGAGGCAGG
hsa_m5C_58	chr12	132772739	132772740	-	ENST00000204726	C5588	m5C	C6	5'-GGCACCGCGCCUGGCCAGGCCGG-3'	....(((.((((....))))))) ( -9.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr12:132772723-132772745	GOLGA3	HGNC:4426	ENSG00000090615	GGCACCGCGCCUGGCCAGGCCGG
hsa_m5C_59	chr7	107891192	107891193	+	ENST00000205402	C11	m5C	C8	5'-GGCGGAGCGGCGG-3'	.((......)).. ( -2.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	13	chr7:107891186-107891198	DLD	HGNC:2898	ENSG00000091140	GGCGGAGCGGCGG
hsa_m5C_60	chr17	40936871	40936872	-	ENST00000209718	C383	m5C	C10	5'-GGGCCACACCUCCGGGUUACCAGGGGAAGGG-3'	...((...((((.((....)).))))...)) ( -8.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	31	chr17:40936851-40936881	KRT23	HGNC:6438	ENSG00000108244	GGGCCACACCUCCGGGUUACCAGGGGAAGGG
hsa_m5C_61	chr12	54233814	54233815	-	ENST00000209875	C8673	m5C	C7	5'-GGACUACAGGCGCACACCACGGUGUCUGG-3'	......(((((((........))))))). ( -9.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr12:54233793-54233821	CBX5	HGNC:1555	ENSG00000094916	GGACUACAGGCGCACACCACGGUGUCUGG
hsa_m5C_62	chr12	54235486	54235487	-	ENST00000209875	C7001	m5C	C18	5'-GGAGCUGGGACUACAGGCGCCGG-3'	((.((((......)).)).)).. ( -6.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr12:54235482-54235504	CBX5	HGNC:1555	ENSG00000094916	GGAGCUGGGACUACAGGCGCCGG
hsa_m5C_63	chr12	54257687	54257688	-	ENST00000209875	C120	m5C	C7	5'-GG^GGACCUGGUGG-3'	.....((....)) ( -0.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	13	chr12:54257682-54257692;54280008-54280009	CBX5	HGNC:1555	ENSG00000094916	GGGGACCUGGUGG
hsa_m5C_64	chr12	54231516	54231517	-	ENST00000209875	C10971	m5C	C5	5'-GGUCCUGGCUCCUUGCGGUCACAUUCUGG-3'	.....(((((......)))))........ ( -3.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr12:54231493-54231521	CBX5	HGNC:1555	ENSG00000094916	GGUCCUGGCUCCUUGCGGUCACAUUCUGG
hsa_m5C_65	chr19	10832661	10832662	-	ENST00000214869	C1038	m5C	C5	5'-GGUGCGGGGCAGGG-3'	..(((...)))... ( -0.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	14	chr19:10832653-10832666	TMED1	HGNC:17291	ENSG00000099203	GGUGCGGGGCAGGG
hsa_m5C_66	chr19	58571070	58571071	-	ENST00000215057	C640	m5C	C5	5'-GGGGCAGCGGCCAGG-3'	..(((....)))... ( -3.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr19:58571061-58571075	MZF1	HGNC:13108	ENSG00000099326	GGGGCAGCGGCCAGG
hsa_m5C_67	chr19	58571067	58571068	-	ENST00000215057	C643	m5C	C8	5'-GGGGCAGCGGCCAGG-3'	..(((....)))... ( -3.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr19:58571061-58571075	MZF1	HGNC:13108	ENSG00000099326	GGGGCAGCGGCCAGG
hsa_m5C_68	chr16	30990091	30990092	-	ENST00000215095	C3838	m5C	C6	5'-GGCCUCAGGUGGACCAGGGGAUCUCUAAGG-3'	((((((.((....)).)))).))....... ( -6.20)	loop	mRNA	frontal_cortex	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	30	chr16:30990068-30990097	STX1B	HGNC:18539	ENSG00000099365	GGCCUCAGGUGGACCAGGGGAUCUCUAAGG
hsa_m5C_69	chr16	30990082	30990083	-	ENST00000215095	C3847	m5C	C15	5'-GGCCUCAGGUGGACCAGGGGAUCUCUAAGG-3'	((((((.((....)).)))).))....... ( -6.20)	loop	mRNA	frontal_cortex	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	30	chr16:30990068-30990097	STX1B	HGNC:18539	ENSG00000099365	GGCCUCAGGUGGACCAGGGGAUCUCUAAGG
hsa_m5C_70	chr16	30990833	30990834	-	ENST00000215095	C3096	m5C	C7	5'-GGUACACAGGCCUGGAUUUCUGG-3'	(((......)))........... ( -2.20)	loop	mRNA	frontal_cortex	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	23	chr16:30990818-30990840	STX1B	HGNC:18539	ENSG00000099365	GGUACACAGGCCUGGAUUUCUGG
hsa_m5C_71	chr19	2426567	2426568	-	ENST00000215570	C721	m5C	C10	5'-GGUGGAGGACGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	12	chr19:2426566-2426577	TIMM13	HGNC:11816	ENSG00000099800	GGUGGAGGACGG
hsa_m5C_72	chr19	758064	758065	+	ENST00000215582	C1236	m5C	C20	5'-GGGAGGGCCUGCACGUGGGCCGGG-3'	.....(((((......)))))... ( -8.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr19:758046-758069	MISP	HGNC:27000	ENSG00000099812	GGGAGGGCCUGCACGUGGGCCGGG
hsa_m5C_73	chr19	757056	757057	+	ENST00000215582	C228	m5C	C13	5'-GGUGUGCAUGGGCCCCGAGGCCAGCGG-3'	....(((...((((....)))).))). ( -8.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr19:757045-757071	MISP	HGNC:27000	ENSG00000099812	GGUGUGCAUGGGCCCCGAGGCCAGCGG
hsa_m5C_74	chr19	757057	757058	+	ENST00000215582	C229	m5C	C14	5'-GGUGUGCAUGGGCCCCGAGGCCAGCGG-3'	....(((...((((....)))).))). ( -8.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr19:757045-757071	MISP	HGNC:27000	ENSG00000099812	GGUGUGCAUGGGCCCCGAGGCCAGCGG
hsa_m5C_75	chr19	757058	757059	+	ENST00000215582	C230	m5C	C15	5'-GGUGUGCAUGGGCCCCGAGGCCAGCGG-3'	....(((...((((....)))).))). ( -8.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr19:757045-757071	MISP	HGNC:27000	ENSG00000099812	GGUGUGCAUGGGCCCCGAGGCCAGCGG
hsa_m5C_76	chr19	757059	757060	+	ENST00000215582	C231	m5C	C16	5'-GGUGUGCAUGGGCCCCGAGGCCAGCGG-3'	....(((...((((....)))).))). ( -8.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr19:757045-757071	MISP	HGNC:27000	ENSG00000099812	GGUGUGCAUGGGCCCCGAGGCCAGCGG
hsa_m5C_77	chr22	23971793	23971794	+	ENST00000215770	C820	m5C	C4	5'-GGGCAGUGGGACACUCAGGUGUGGG-3'	..........((((....))))... ( -3.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	25	chr22:23971791-23971815	DDTL	HGNC:33446	ENSG00000099974	GGGCAGUGGGACACUCAGGUGUGGG
hsa_m5C_78	chr22	30332907	30332908	-	ENST00000215793	C4170	m5C	C13	5'-GGGAGCAGUGGGCAGUUCAUGGUGUUAGGG-3'	..((((........))))............ ( -2.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	30	chr22:30332891-30332920	SF3A1	HGNC:10765	ENSG00000099995	GGGAGCAGUGGGCAGUUCAUGGUGUUAGGG
hsa_m5C_79	chr22	37659195	37659196	+	ENST00000215904	C474	m5C	C10	5'-GGGGGACGGCGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	14	chr22:37659187-37659200	PDXP	HGNC:30259	ENSG00000241360	GGGGGACGGCGCGG
hsa_m5C_80	chr22	37659197	37659198	+	ENST00000215904	C476	m5C	C12	5'-GGGGGACGGCGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	14	chr22:37659187-37659200	PDXP	HGNC:30259	ENSG00000241360	GGGGGACGGCGCGG
hsa_m5C_81	chr22	37844064	37844065	-	ENST00000215941	C270	m5C	C22	5'-GGGCCUCUCGGGCCGGGCGUCCGGCGGG-3'	...((....))(((((....)))))... (-10.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr22:37844059-37844086	ANKRD54	HGNC:25185	ENSG00000100124	GGGCCUCUCGGGCCGGGCGUCCGGCGGG
hsa_m5C_82	chr22	37922201	37922202	+	ENST00000215957	C926	m5C	C11	5'-GGGGCUGAGGCCGAUGG-3'	..(((....)))..... ( -3.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr22:37922192-37922208	MICALL1	HGNC:29804	ENSG00000100139	GGGGCUGAGGCCGAUGG
hsa_m5C_83	chr22	23059601	23059602	-	ENST00000216036	C1001	m5C	C11	5'-GGCAGAGGCCCCCGAGGGCCGCAAGG-3'	.((...(((((....))))))).... (-10.30)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	26	chr22:23059587-23059612	RSPH14	HGNC:13437	ENSG00000100218	GGCAGAGGCCCCCGAGGGCCGCAAGG
hsa_m5C_84	chr22	38706037	38706038	+	ENST00000216044	C95	m5C	C6	5'-GGGGGCGGCCAGGGCCGCGG-3'	....(((((....))))).. ( -9.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	20	chr22:38706033-38706052	GTPBP1	HGNC:4669	ENSG00000100226	GGGGGCGGCCAGGGCCGCGG
hsa_m5C_85	chr22	38706040	38706041	+	ENST00000216044	C98	m5C	C9	5'-GGGGGCGGCCAGGGCCGCGG-3'	....(((((....))))).. ( -9.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	20	chr22:38706033-38706052	GTPBP1	HGNC:4669	ENSG00000100226	GGGGGCGGCCAGGGCCGCGG
hsa_m5C_86	chr22	38706041	38706042	+	ENST00000216044	C99	m5C	C10	5'-GGGGGCGGCCAGGGCCGCGG-3'	....(((((....))))).. ( -9.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	20	chr22:38706033-38706052	GTPBP1	HGNC:4669	ENSG00000100226	GGGGGCGGCCAGGGCCGCGG
hsa_m5C_87	chr22	38729562	38729563	+	ENST00000216044	C1830	m5C	C7	5'-GGGGGGCCCGUCUGGUGGG-3'	(((...))).......... ( -2.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	19	chr22:38729557-38729575	GTPBP1	HGNC:4669	ENSG00000100226	GGGGGGCCCGUCUGGUGGG
hsa_m5C_88	chr22	38729563	38729564	+	ENST00000216044	C1831	m5C	C8	5'-GGGGGGCCCGUCUGGUGGG-3'	(((...))).......... ( -2.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	19	chr22:38729557-38729575	GTPBP1	HGNC:4669	ENSG00000100226	GGGGGGCCCGUCUGGUGGG
hsa_m5C_89	chr22	38729564	38729565	+	ENST00000216044	C1832	m5C	C9	5'-GGGGGGCCCGUCUGGUGGG-3'	(((...))).......... ( -2.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038;30872485	19	chr22:38729557-38729575	GTPBP1	HGNC:4669	ENSG00000100226	GGGGGGCCCGUCUGGUGGG
hsa_m5C_90	chr22	39152481	39152482	-	ENST00000216133	C199	m5C	C3	5'-GGCCCGGCCCGGCCCCGG-3'	((((......)))).... ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr22:39152467-39152484	CBX7	HGNC:1557	ENSG00000100307	GGCCCGGCCCGGCCCCGG
hsa_m5C_91	chr22	39152479	39152480	-	ENST00000216133	C201	m5C	C5	5'-GGCCCGGCCCGGCCCCGG-3'	((((......)))).... ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr22:39152467-39152484	CBX7	HGNC:1557	ENSG00000100307	GGCCCGGCCCGGCCCCGG
hsa_m5C_92	chr22	39152476	39152477	-	ENST00000216133	C204	m5C	C8	5'-GGCCCGGCCCGGCCCCGG-3'	((((......)))).... ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr22:39152467-39152484	CBX7	HGNC:1557	ENSG00000100307	GGCCCGGCCCGGCCCCGG
hsa_m5C_93	chr22	39152475	39152476	-	ENST00000216133	C205	m5C	C9	5'-GGCCCGGCCCGGCCCCGG-3'	((((......)))).... ( -6.50)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr22:39152467-39152484	CBX7	HGNC:1557	ENSG00000100307	GGCCCGGCCCGGCCCCGG
hsa_m5C_94	chr22	39152474	39152475	-	ENST00000216133	C206	m5C	C10	5'-GGCCCGGCCCGGCCCCGG-3'	((((......)))).... ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr22:39152467-39152484	CBX7	HGNC:1557	ENSG00000100307	GGCCCGGCCCGGCCCCGG
hsa_m5C_95	chr22	39152468	39152469	-	ENST00000216133	C212	m5C	C16	5'-GGCCCGGCCCGGCCCCGG-3'	((((......)))).... ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr22:39152467-39152484	CBX7	HGNC:1557	ENSG00000100307	GGCCCGGCCCGGCCCCGG
hsa_m5C_96	chr22	39315498	39315499	-	ENST00000216146	C584	m5C	C7	5'-GGUGAACGGAGGCACUGUGG-3'	((((........)))).... ( -2.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr22:39315486-39315505	RPL3	HGNC:10332	ENSG00000100316	GGUGAACGGAGGCACUGUGG
hsa_m5C_97	chr22	46685322	46685323	-	ENST00000216264	C3529	m5C	C7	5'-GGAGGCCGAGGCGG-3'	....((....)).. ( -1.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr22:46685316-46685329	CERK	HGNC:19256	ENSG00000100422	GGAGGCCGAGGCGG
hsa_m5C_98	chr22	46685317	46685318	-	ENST00000216264	C3534	m5C	C12	5'-GGAGGCCGAGGCGG-3'	....((....)).. ( -1.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr22:46685316-46685329	CERK	HGNC:19256	ENSG00000100422	GGAGGCCGAGGCGG
hsa_m5C_99	chr14	21352466	21352467	-	ENST00000216297	C3442	m5C	C3	5'-GGCAAGGGAGGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	30526041	14	chr14:21352456-21352469	SUPT16H	HGNC:11465	ENSG00000092201	GGCAAGGGAGGAGG
hsa_m5C_100	chr14	21384009	21384010	-	ENST00000216297	C10	m5C	C10	5'-GGGAGAGUGCGGGAUUCCUGGGCCGAGAGCGGG-3'	......((.((((...)))).)).......... ( -6.30)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	33	chr14:21383987-21384019	SUPT16H	HGNC:11465	ENSG00000092201	GGGAGAGUGCGGGAUUCCUGGGCCGAGAGCGGG
hsa_m5C_101	chr14	50231382	50231383	-	ENST00000216373	C196	m5C	C6	5'-GGAGGCGGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	11	chr14:50231378-50231388	SOS2	HGNC:11188	ENSG00000100485	GGAGGCGGCGG
hsa_m5C_102	chr14	50231379	50231380	-	ENST00000216373	C199	m5C	C9	5'-GGAGGCGGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	11	chr14:50231378-50231388	SOS2	HGNC:11188	ENSG00000100485	GGAGGCGGCGG
hsa_m5C_103	chr14	54509913	54509914	+	ENST00000216420	C9	m5C	C9	5'-GGGCUGGGCUGGGCUCCGCGGCUGGAGCCGGG-3'	........((.((((((......)))))).)) (-14.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	32	chr14:54509906-54509937	CGRRF1	HGNC:15528	ENSG00000100532	GGGCUGGGCUGGGCUCCGCGGCUGGAGCCGGG
hsa_m5C_104	chr14	39181620	39181621	+	ENST00000216832	C1938	m5C	C12	5'-GGAGUAGGGGCCGG-3'	((........)).. ( -0.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	14	chr14:39181610-39181623	PNN	HGNC:9162	ENSG00000100941	GGAGUAGGGGCCGG
hsa_m5C_105	chr20	25297036	25297037	+	ENST00000216962	C3141	m5C	C9	5'-GGAGGGGUCGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	11	chr20:25297029-25297039	PYGB	HGNC:9723	ENSG00000100994	GGAGGGGUCGG
hsa_m5C_106	chr20	63488388	63488389	-	ENST00000217182	C1398	m5C	C13	5'-GGCAGACGGUGGCCGUAGG-3'	(((........)))..... ( -4.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	19	chr20:63488383-63488401	EEF1A2	HGNC:3192	ENSG00000101210	GGCAGACGGUGGCCGUAGG
hsa_m5C_107	chr20	33443419	33443420	-	ENST00000217381	C344	m5C	C6	5'-GGCGCCGCGGAGCCGGGCGCCGGG-3'	((((((.((....))))))))... (-15.30)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr20:33443402-33443425	SNTA1	HGNC:11167	ENSG00000101400	GGCGCCGCGGAGCCGGGCGCCGGG
hsa_m5C_108	chr20	33443407	33443408	-	ENST00000217381	C356	m5C	C18	5'-GGCGCCGCGGAGCCGGGCGCCGGG-3'	((((((.((....))))))))... (-15.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr20:33443402-33443425	SNTA1	HGNC:11167	ENSG00000101400	GGCGCCGCGGAGCCGGGCGCCGGG
hsa_m5C_109	chr20	33417870	33417871	-	ENST00000217381	C692	m5C	C9	5'-GGUGGGACCUCGGUCGG-3'	.....(((....))).. ( -3.70)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr20:33417863-33417879	SNTA1	HGNC:11167	ENSG00000101400	GGUGGGACCUCGGUCGG
hsa_m5C_110	chrX	153726074	153726075	+	ENST00000218104	C1220	m5C	C14	5'-GGGGAGCUGGUGGCAGAGGAGGCGCGG-3'	......(((....)))........... ( -2.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	27	chrX:153726062-153726088	ABCD1	HGNC:61	ENSG00000101986	GGGGAGCUGGUGGCAGAGGAGGCGCGG
hsa_m5C_111	chrX	47245477	47245478	+	ENST00000218348	C2444	m5C	C23	5'-GGAGACCCUGGAGAAGGAAAACCCCUG^G-3'	((....(((.....)))....))..... ( -3.00)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chrX:47245456-47245482;47247072-47247072	USP11	HGNC:12609	ENSG00000102226	GGAGACCCUGGAGAAGGAAAACCCCUGG
hsa_m5C_112	chr16	67660336	67660337	-	ENST00000219251	C474	m5C	C20	5'-GGCGCGGGGUGUACGUGGGCGGGG-3'	..((((.......))))....... ( -4.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	24	chr16:67660333-67660356	ACD	HGNC:25070	ENSG00000102977	GGCGCGGGGUGUACGUGGGCGGGG
hsa_m5C_113	chr16	67660274	67660275	-	ENST00000219251	C536	m5C	C5	5'-GGGCCUGGGCGCCCGCGGGAAACCCGGG-3'	((((......)))).((((...)))).. (-12.40)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr16:67660252-67660279	ACD	HGNC:25070	ENSG00000102977	GGGCCUGGGCGCCCGCGGGAAACCCGGG
hsa_m5C_114	chr16	67660263	67660264	-	ENST00000219251	C547	m5C	C16	5'-GGGCCUGGGCGCCCGCGGGAAACCCGGG-3'	((((......)))).((((...)))).. (-12.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr16:67660252-67660279	ACD	HGNC:25070	ENSG00000102977	GGGCCUGGGCGCCCGCGGGAAACCCGGG
hsa_m5C_115	chr16	58040084	58040085	+	ENST00000219271	C1248	m5C	C12	5'-GGCACCGGUGGCUUUCUGG-3'	....((((.......)))) ( -2.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr16:58040074-58040092	MMP15	HGNC:7161	ENSG00000102996	GGCACCGGUGGCUUUCUGG
hsa_m5C_116	chr16	58046614	58046615	+	ENST00000219271	C3776	m5C	C3	5'-GGCCGUGGCUGCUGUGGGAAAUGG-3'	..((((..((......))..)))) ( -4.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr16:58046613-58046636	MMP15	HGNC:7161	ENSG00000102996	GGCCGUGGCUGCUGUGGGAAAUGG
hsa_m5C_117	chr16	74305666	74305667	+	ENST00000219313	C1010	m5C	C16	5'-GGAUAGGAAAGAGGACAAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr16:74305652-74305671	PSMD7	HGNC:9565	ENSG00000103035	GGAUAGGAAAGAGGACAAGG
hsa_m5C_118	chr16	677381	677382	+	ENST00000219551	C904	m5C	C11	5'-GGCAGGCGUGCUGGCAG^G-3'	((((....))))...... ( -3.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	18	chr16:677372-677388;677459-677459	RHBDL1	HGNC:10007	ENSG00000103269	GGCAGGCGUGCUGGCAGG
hsa_m5C_119	chr16	549321	549322	+	ENST00000219611	C2200	m5C	C3	5'-GGCCGGACCUGGUGG-3'	.((((....)))).. ( -2.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	15	chr16:549320-549334	CAPN15	HGNC:11182	ENSG00000103326	GGCCGGACCUGGUGG
hsa_m5C_120	chr16	554136	554137	+	ENST00000219611	C4389	m5C	C4	5'-GGGCGCCAGGCCCGCUGUGGGUGGG-3'	((((.....))))............ ( -8.40)	loop	mRNA	HeLa	RBS-Seq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30872485	25	chr16:554134-554158	CAPN15	HGNC:11182	ENSG00000103326	GGGCGCCAGGCCCGCUGUGGGUGGG
hsa_m5C_121	chr16	29807569	29807570	+	ENST00000219782	C958	m5C	C6	5'-GGCCGCCGGUGGCGUGG-3'	...((((...))))... ( -4.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	17	chr16:29807565-29807581	MAZ	HGNC:6914	ENSG00000103495	GGCCGCCGGUGGCGUGG
hsa_m5C_122	chr16	29807570	29807571	+	ENST00000219782	C959	m5C	C7	5'-GGCCGCCGGUGGCGUGG-3'	...((((...))))... ( -4.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	17	chr16:29807565-29807581	MAZ	HGNC:6914	ENSG00000103495	GGCCGCCGGUGGCGUGG
hsa_m5C_123	chr16	29810103	29810104	+	ENST00000219782	C1705	m5C	C6	5'-GGCGGCGGCAGCGG-3'	....((....)).. ( -1.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr16:29810099-29810112	MAZ	HGNC:6914	ENSG00000103495	GGCGGCGGCAGCGG
hsa_m5C_124	chr16	29810106	29810107	+	ENST00000219782	C1708	m5C	C9	5'-GGCGGCGGCAGCGG-3'	....((....)).. ( -1.70)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038;22344696	14	chr16:29810099-29810112	MAZ	HGNC:6914	ENSG00000103495	GGCGGCGGCAGCGG
hsa_m5C_125	chr16	29810109	29810110	+	ENST00000219782	C1711	m5C	C12	5'-GGCGGCGGCAGCGG-3'	....((....)).. ( -1.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr16:29810099-29810112	MAZ	HGNC:6914	ENSG00000103495	GGCGGCGGCAGCGG
hsa_m5C_126	chr16	29810864	29810865	+	ENST00000219782	C2466	m5C	C7	5'-GGGGAGCAGGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	13	chr16:29810859-29810871	MAZ	HGNC:6914	ENSG00000103495	GGGGAGCAGGAGG
hsa_m5C_127	chr16	29806558	29806559	+	ENST00000219782	C31	m5C	C7	5'-GGGGUGCGCGGGCGGCGGGGCGGCCCGCGG-3'	......(((((((.((...)).))))))). (-19.00)	bulge	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	30	chr16:29806553-29806582	MAZ	HGNC:6914	ENSG00000103495	GGGGUGCGCGGGCGGCGGGGCGGCCCGCGG
hsa_m5C_128	chr16	29806560	29806561	+	ENST00000219782	C33	m5C	C9	5'-GGGGUGCGCGGGCGGCGGGGCGGCCCGCGG-3'	......(((((((.((...)).))))))). (-19.00)	bulge	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	30	chr16:29806553-29806582	MAZ	HGNC:6914	ENSG00000103495	GGGGUGCGCGGGCGGCGGGGCGGCCCGCGG
hsa_m5C_129	chr16	29806564	29806565	+	ENST00000219782	C37	m5C	C13	5'-GGGGUGCGCGGGCGGCGGGGCGGCCCGCGG-3'	......(((((((.((...)).))))))). (-19.00)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038;22344696	30	chr16:29806553-29806582	MAZ	HGNC:6914	ENSG00000103495	GGGGUGCGCGGGCGGCGGGGCGGCCCGCGG
hsa_m5C_130	chr16	29806567	29806568	+	ENST00000219782	C40	m5C	C16	5'-GGGGUGCGCGGGCGGCGGGGCGGCCCGCGG-3'	......(((((((.((...)).))))))). (-19.00)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;22344696	30	chr16:29806553-29806582	MAZ	HGNC:6914	ENSG00000103495	GGGGUGCGCGGGCGGCGGGGCGGCCCGCGG
hsa_m5C_131	chr16	29806576	29806577	+	ENST00000219782	C49	m5C	C25	5'-GGGGUGCGCGGGCGGCGGGGCGGCCCGCGG-3'	......(((((((.((...)).))))))). (-19.00)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr16:29806553-29806582	MAZ	HGNC:6914	ENSG00000103495	GGGGUGCGCGGGCGGCGGGGCGGCCCGCGG
hsa_m5C_132	chr15	40873285	40873286	-	ENST00000220507	C578	m5C	C7	5'-GGGGGGCCGGGAGGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	15	chr15:40873278-40873292	RHOV	HGNC:18313	ENSG00000104140	GGGGGGCCGGGAGGG
hsa_m5C_133	chr15	40873284	40873285	-	ENST00000220507	C579	m5C	C8	5'-GGGGGGCCGGGAGGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	15	chr15:40873278-40873292	RHOV	HGNC:18313	ENSG00000104140	GGGGGGCCGGGAGGG
hsa_m5C_134	chr8	41309205	41309206	-	ENST00000220772	C268	m5C	C6	5'-GGAGGCGGCGG-3'	NA	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31061524	11	chr8:41309201-41309211	SFRP1	HGNC:10776	ENSG00000104332	GGAGGCGGCGG
hsa_m5C_135	chr8	41309202	41309203	-	ENST00000220772	C271	m5C	C9	5'-GGAGGCGGCGG-3'	NA	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	11	chr8:41309201-41309211	SFRP1	HGNC:10776	ENSG00000104332	GGAGGCGGCGG
hsa_m5C_136	chr8	30679111	30679112	-	ENST00000221130	C1988	m5C	C11	5'-GGCUGGAGUGCGGUGG-3'	.((((.....)))).. ( -2.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr8:30679107-30679122	GSR	HGNC:4623	ENSG00000104687	GGCUGGAGUGCGGUGG
hsa_m5C_137	chr19	7555274	7555275	+	ENST00000221249	C3161	m5C	C10	5'-GGUUUUCUCCAGGCGCGCGGACCGG-3'	(((((.............))))).. ( -2.30)	loop	mRNA	293T;HeLa;frontal_cortex,lung,Muscle,Testis,HeLa,T24	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	30872485;38168991	25	chr19:7555266-7555290	PNPLA6	HGNC:16268	ENSG00000032444	GGUUUUCUCCAGGCGCGCGGACCGG
hsa_m5C_138	chr19	38831776	38831777	-	ENST00000221418	C18	m5C	C6	5'-GGCGGCGGCGAUGGCGGCGG-3'	....((.((....)).)).. ( -6.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr19:38831763-38831782	ECH1	HGNC:3149	ENSG00000104823	GGCGGCGGCGAUGGCGGCGG
hsa_m5C_139	chr19	38831773	38831774	-	ENST00000221418	C21	m5C	C9	5'-GGCGGCGGCGAUGGCGGCGG-3'	....((.((....)).)).. ( -6.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr19:38831763-38831782	ECH1	HGNC:3149	ENSG00000104823	GGCGGCGGCGAUGGCGGCGG
hsa_m5C_140	chr19	45037611	45037612	+	ENST00000221452	C1678	m5C	C5	5'-GGUGCCGGGGCCGUGGUUGGGG-3'	(((......))).......... ( -3.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	22	chr19:45037608-45037629	RELB	HGNC:9956	ENSG00000104856	GGUGCCGGGGCCGUGGUUGGGG
hsa_m5C_141	chr19	45145772	45145773	+	ENST00000221462	C1864	m5C	C26	5'-GGGCCACAAGGUGUUUGUGGUGACCCGGG-3'	(((((((((.....))))))...)))... (-10.50)	loop	mRNA	Testis,T24;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;38168991	29	chr19:45145748-45145776	PPP1R37	HGNC:27607	ENSG00000104866	GGGCCACAAGGUGUUUGUGGUGACCCGGG
hsa_m5C_142	chr19	2251516	2251517	+	ENST00000221496	C1253	m5C	C7	5'-GGUGGCCCCGGCGG-3'	....((....)).. ( -0.40)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	14	chr19:2251511-2251524	AMH	HGNC:464	ENSG00000104899	GGUGGCCCCGGCGG
hsa_m5C_143	chr19	3053804	3053805	-	ENST00000221561	C989	m5C	C10	5'-GGGCCGGGACAGGGAGGUUGGGAGGGGGGACAGAGGGG-3'	...((....(((.....)))....))............ ( -2.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	38	chr19:3053777-3053814	TLE5	HGNC:307	ENSG00000104964	GGGCCGGGACAGGGAGGUUGGGAGGGGGGACAGAGGGG
hsa_m5C_144	chr19	41342003	41342004	-	ENST00000221930	C1617	m5C	C27	5'-GGUUCACUACCGGCCGCCGAGGUGACCUGG-3'	(((.((((..(((...))).)))))))... ( -9.00)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	30	chr19:41342001-41342030	TGFB1	HGNC:11766	ENSG00000105329	GGUUCACUACCGGCCGCCGAGGUGACCUGG
hsa_m5C_145	chr19	10396019	10396020	-	ENST00000222005	C349	m5C	C8	5'-GGAGGAGCGGAGCUGG-3'	.....(((...))).. ( -0.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	16	chr19:10396012-10396027	CDC37	HGNC:1735	ENSG00000105401	GGAGGAGCGGAGCUGG
hsa_m5C_146	chr19	10396014	10396015	-	ENST00000222005	C354	m5C	C13	5'-GGAGGAGCGGAGCUGG-3'	.....(((...))).. ( -0.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	16	chr19:10396012-10396027	CDC37	HGNC:1735	ENSG00000105401	GGAGGAGCGGAGCUGG
hsa_m5C_147	chr19	11323553	11323554	-	ENST00000222120	C2754	m5C	C11	5'-GGCUGGAGUGCGGUGG-3'	.((((.....)))).. ( -2.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr19:11323549-11323564	RAB3D	HGNC:9779	ENSG00000105514	GGCUGGAGUGCGGUGG
hsa_m5C_148	chr19	18170019	18170020	+	ENST00000222254	C3468	m5C	C15	5'-GGAGGCCAGCCUGGCCAAAAUGG-3'	...(((((...)))))....... ( -7.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr19:18170006-18170028	PIK3R2	HGNC:8980	ENSG00000105647	GGAGGCCAGCCUGGCCAAAAUGG
hsa_m5C_149	chr19	18170067	18170068	+	ENST00000222254	C3516	m5C	C3	5'-GGCGUGGUGGCGG-3'	.((......)).. ( -2.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	13	chr19:18170066-18170078	PIK3R2	HGNC:8980	ENSG00000105647	GGCGUGGUGGCGG
hsa_m5C_150	chr19	18161290	18161291	+	ENST00000222254	C1166	m5C	C25	5'-GGGCCCUGCGGG^AGGCCGCGGGGCCCGUGGGG-3'	(((((((((((....)))))))))))...... (-27.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	32	chr19:18161174-18161185;18161279-18161298	PIK3R2	HGNC:8980	ENSG00000105647	GGGCCCUGCGGGAGGCCGCGGGGCCCGUGGGG
hsa_m5C_151	chr19	18161400	18161401	+	ENST00000222254	C1276	m5C	C5	5'-GGGUCCCGCGGUCCGGGCCCUGGGCGCCACCUUUGGG-3'	(((.((((.....))))))).((......))...... (-13.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	37	chr19:18161397-18161433	PIK3R2	HGNC:8980	ENSG00000105647	GGGUCCCGCGGUCCGGGCCCUGGGCGCCACCUUUGGG
hsa_m5C_152	chr19	18161404	18161405	+	ENST00000222254	C1280	m5C	C9	5'-GGGUCCCGCGGUCCGGGCCCUGGGCGCCACCUUUGGG-3'	(((.((((.....))))))).((......))...... (-13.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	37	chr19:18161397-18161433	PIK3R2	HGNC:8980	ENSG00000105647	GGGUCCCGCGGUCCGGGCCCUGGGCGCCACCUUUGGG
hsa_m5C_153	chr19	42249578	42249579	-	ENST00000222329	C662	m5C	C12	5'-GGCUGUGGUGGCCCGCCGCCUGG-3'	(((.((((....)))).)))... (-10.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	23	chr19:42249568-42249590	ERF	HGNC:3444	ENSG00000105722	GGCUGUGGUGGCCCGCCGCCUGG
hsa_m5C_154	chr19	42249577	42249578	-	ENST00000222329	C663	m5C	C13	5'-GGCUGUGGUGGCCCGCCGCCUGG-3'	(((.((((....)))).)))... (-10.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	23	chr19:42249568-42249590	ERF	HGNC:3444	ENSG00000105722	GGCUGUGGUGGCCCGCCGCCUGG
hsa_m5C_155	chr19	42249576	42249577	-	ENST00000222329	C664	m5C	C14	5'-GGCUGUGGUGGCCCGCCGCCUGG-3'	(((.((((....)))).)))... (-10.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	23	chr19:42249568-42249590	ERF	HGNC:3444	ENSG00000105722	GGCUGUGGUGGCCCGCCGCCUGG
hsa_m5C_156	chr19	38082712	38082713	+	ENST00000222345	C1677	m5C	C12	5'-GGCCAUGGCCUCCCUCACGGCCUCGCGG-3'	.((...((((........))))..)).. ( -8.60)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr19:38082702-38082729	SIPA1L3	HGNC:23801	ENSG00000105738	GGCCAUGGCCUCCCUCACGGCCUCGCGG
hsa_m5C_157	chr19	38206668	38206669	+	ENST00000222345	C6304	m5C	C13	5'-GGCUUGUGGGGCCGAGG-3'	(((((...))))).... ( -5.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	17	chr19:38206657-38206673	SIPA1L3	HGNC:23801	ENSG00000105738	GGCUUGUGGGGCCGAGG
hsa_m5C_158	chr7	130305832	130305833	+	ENST00000222482	C524	m5C	C3	5'-GGCGUGAGGCGGCCGG-3'	(((........))).. ( -5.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	16	chr7:130305831-130305846	CPA4	HGNC:15740	ENSG00000128510	GGCGUGAGGCGGCCGG
hsa_m5C_159	chr7	90387234	90387235	+	ENST00000222511	C3271	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr7:90387230-90387244	GTPBP10	HGNC:25106	ENSG00000105793	GGAGGCUGAGGCAGG
hsa_m5C_160	chr7	90387240	90387241	+	ENST00000222511	C3277	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr7:90387230-90387244	GTPBP10	HGNC:25106	ENSG00000105793	GGAGGCUGAGGCAGG
hsa_m5C_161	chr7	6017818	6017819	+	ENST00000223029	C440	m5C	C11	5'-GGAAG^GAUUACGGGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr7:6015348-6015352;6017814-6017823	AIMP2	HGNC:20609	ENSG00000106305	GGAAGGAUUACGGGG
hsa_m5C_162	chr7	7969484	7969485	+	ENST00000223145	C690	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr7:7969483-7969493	GLCCI1	HGNC:18713	ENSG00000106415	GGCGGCGGCGG
hsa_m5C_163	chr7	7969487	7969488	+	ENST00000223145	C693	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr7:7969483-7969493	GLCCI1	HGNC:18713	ENSG00000106415	GGCGGCGGCGG
hsa_m5C_164	chr7	7969490	7969491	+	ENST00000223145	C696	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr7:7969483-7969493	GLCCI1	HGNC:18713	ENSG00000106415	GGCGGCGGCGG
hsa_m5C_165	chr10	71777809	71777810	+	ENST00000224721	C5380	m5C	C3	5'-GGCACUGGACCUGGAUGAGG-3'	.........(((.....))) ( -1.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr10:71777808-71777827	CDH23	HGNC:13733	ENSG00000107736	GGCACUGGACCUGGAUGAGG
hsa_m5C_166	chr17	29574369	29574370	-	ENST00000225394	C2888	m5C	C16	5'-GGGCAGGUGGGGACACUCCAAGUGGG-3'	...((..(((((...)))))..)).. ( -5.30)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	26	chr17:29574360-29574385	GIT1	HGNC:4272	ENSG00000108262	GGGCAGGUGGGGACACUCCAAGUGGG
hsa_m5C_167	chr17	30523045	30523046	+	ENST00000225724	C1493	m5C	C7	5'-GGUGCCCAGGCUGGAGUGCAGUGG-3'	.(((((((...))).))))..... ( -5.10)	loop	mRNA	lung	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	24	chr17:30523040-30523063	GOSR1	HGNC:4430	ENSG00000108587	GGUGCCCAGGCUGGAGUGCAGUGG
hsa_m5C_168	chr17	42543996	42543997	+	ENST00000225927	C2023	m5C	C3	5'-GGCGGGGUUGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	11	chr17:42543995-42544005	NAGLU	HGNC:7632	ENSG00000108784	GGCGGGGUUGG
hsa_m5C_169	chr17	50397342	50397343	-	ENST00000225972	C181	m5C	C13	5'-GGAACCCCGGAGCCGGGG-3'	....(((((....))))) ( -8.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr17:50397338-50397355	LRRC59	HGNC:28817	ENSG00000108829	GGAACCCCGGAGCCGGGG
hsa_m5C_170	chr17	28344624	28344625	+	ENST00000226225	C1186	m5C	C13	5'-GGAGUCAGGGCACGGGAGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr17:28344613-28344631	TNFAIP1	HGNC:11894	ENSG00000109079	GGAGUCAGGGCACGGGAGG
hsa_m5C_171	chr11	60850337	60850338	+	ENST00000227520	C1108	m5C	C8	5'-GGACGGCCCGAGGCCUUCCAUGG-3'	(((.((((...)))).))).... (-10.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr11:60850331-60850353	CCDC86	HGNC:28359	ENSG00000110104	GGACGGCCCGAGGCCUUCCAUGG
hsa_m5C_172	chr11	75797244	75797245	+	ENST00000228027	C936	m5C	C12	5'-GGUCGGGGGUGCGG-3'	...((......)). ( -0.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr11:75797234-75797247	DGAT2	HGNC:16940	ENSG00000062282	GGUCGGGGGUGCGG
hsa_m5C_173	chr11	16756672	16756673	+	ENST00000228136	C2253	m5C	C6	5'-GGAGGCCGAGGUGG-3'	NA	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database	28418038	14	chr11:16756668-16756681	C11orf58	HGNC:16990	ENSG00000110696	GGAGGCCGAGGUGG
hsa_m5C_174	chr11	16756673	16756674	+	ENST00000228136	C2254	m5C	C7	5'-GGAGGCCGAGGUGG-3'	NA	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	14	chr11:16756668-16756681	C11orf58	HGNC:16990	ENSG00000110696	GGAGGCCGAGGUGG
hsa_m5C_175	chr12	51062870	51062871	-	ENST00000228515	C2851	m5C	C16	5'-GGCCAAAGGAGGCAGCGG-3'	.(((......)))..... ( -4.20)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	18	chr12:51062869-51062886	CSRNP2	HGNC:16006	ENSG00000110925	GGCCAAAGGAGGCAGCGG
hsa_m5C_176	chr12	96194411	96194412	+	ENST00000228741	C38	m5C	C3	5'-GGCCGGGGCGCGCGGCGCGGGG-3'	.((((.......))))...... ( -6.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	22	chr12:96194410-96194431	ELK3	HGNC:3325	ENSG00000111145	GGCCGGGGCGCGCGGCGCGGGG
hsa_m5C_177	chr12	96194412	96194413	+	ENST00000228741	C39	m5C	C4	5'-GGCCGGGGCGCGCGGCGCGGGG-3'	.((((.......))))...... ( -6.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	22	chr12:96194410-96194431	ELK3	HGNC:3325	ENSG00000111145	GGCCGGGGCGCGCGGCGCGGGG
hsa_m5C_178	chr12	96194417	96194418	+	ENST00000228741	C44	m5C	C9	5'-GGCCGGGGCGCGCGGCGCGGGG-3'	.((((.......))))...... ( -6.90)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	22	chr12:96194410-96194431	ELK3	HGNC:3325	ENSG00000111145	GGCCGGGGCGCGCGGCGCGGGG
hsa_m5C_179	chr12	96194385	96194386	+	ENST00000228741	C12	m5C	C10	5'-GGGCCUGGGCGGCCAGCCCCGG-3'	(((.((((....)))).))).. (-11.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr12:96194377-96194398	ELK3	HGNC:3325	ENSG00000111145	GGGCCUGGGCGGCCAGCCCCGG
hsa_m5C_180	chr12	96194392	96194393	+	ENST00000228741	C19	m5C	C17	5'-GGGCCUGGGCGGCCAGCCCCGG-3'	(((.((((....)))).))).. (-11.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	22	chr12:96194377-96194398	ELK3	HGNC:3325	ENSG00000111145	GGGCCUGGGCGGCCAGCCCCGG
hsa_m5C_181	chr12	96194393	96194394	+	ENST00000228741	C20	m5C	C18	5'-GGGCCUGGGCGGCCAGCCCCGG-3'	(((.((((....)))).))).. (-11.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	22	chr12:96194377-96194398	ELK3	HGNC:3325	ENSG00000111145	GGGCCUGGGCGGCCAGCCCCGG
hsa_m5C_182	chr12	96194394	96194395	+	ENST00000228741	C21	m5C	C19	5'-GGGCCUGGGCGGCCAGCCCCGG-3'	(((.((((....)))).))).. (-11.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	22	chr12:96194377-96194398	ELK3	HGNC:3325	ENSG00000111145	GGGCCUGGGCGGCCAGCCCCGG
hsa_m5C_183	chr12	96194395	96194396	+	ENST00000228741	C22	m5C	C20	5'-GGGCCUGGGCGGCCAGCCCCGG-3'	(((.((((....)))).))).. (-11.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	22	chr12:96194377-96194398	ELK3	HGNC:3325	ENSG00000111145	GGGCCUGGGCGGCCAGCCCCGG
hsa_m5C_184	chr12	6390742	6390743	+	ENST00000228918	C1311	m5C	C8	5'-GGGGGGACCACCGGGUCCUGG-3'	...((((((....)))))).. ( -9.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	21	chr12:6390736-6390756	LTBR	HGNC:6718	ENSG00000111321	GGGGGGACCACCGGGUCCUGG
hsa_m5C_185	chr12	6390745	6390746	+	ENST00000228918	C1314	m5C	C11	5'-GGGGGGACCACCGGGUCCUGG-3'	...((((((....)))))).. ( -9.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	21	chr12:6390736-6390756	LTBR	HGNC:6718	ENSG00000111321	GGGGGGACCACCGGGUCCUGG
hsa_m5C_186	chr12	75511575	75511576	-	ENST00000229214	C34	m5C	C5	5'-GGAGCGGCCAGAAAAAGGCGCUGG-3'	..((((.((.......)))))).. ( -7.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr12:75511557-75511580	KRR1	HGNC:5176	ENSG00000111615	GGAGCGGCCAGAAAAAGGCGCUGG
hsa_m5C_187	chr12	75511571	75511572	-	ENST00000229214	C38	m5C	C9	5'-GGAGCGGCCAGAAAAAGGCGCUGG-3'	..((((.((.......)))))).. ( -7.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr12:75511557-75511580	KRR1	HGNC:5176	ENSG00000111615	GGAGCGGCCAGAAAAAGGCGCUGG
hsa_m5C_188	chr12	120469630	120469631	-	ENST00000229390	C118	m5C	C7	5'-GGCGGGCCCGCGG-3'	.(((....))).. ( -3.30)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	13	chr12:120469625-120469637	SRSF9	HGNC:10791	ENSG00000111786	GGCGGGCCCGCGG
hsa_m5C_189	chr12	26938495	26938496	+	ENST00000229395	C27	m5C	C10	5'-GGUCGGAGGCGG-3'	...((....)). ( -0.50)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	12	chr12:26938487-26938498	FGFR1OP2	HGNC:23098	ENSG00000111790	GGUCGGAGGCGG
hsa_m5C_190	chr6	35456013	35456014	+	ENST00000229769	C724	m5C	C10	5'-GGGGCUGGGCCUGGGGGG-3'	.((((...))))...... ( -3.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	18	chr6:35456005-35456022	FANCE	HGNC:3586	ENSG00000112039	GGGGCUGGGCCUGGGGGG
hsa_m5C_191	chr6	35456014	35456015	+	ENST00000229769	C725	m5C	C11	5'-GGGGCUGGGCCUGGGGGG-3'	.((((...))))...... ( -3.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	18	chr6:35456005-35456022	FANCE	HGNC:3586	ENSG00000112039	GGGGCUGGGCCUGGGGGG
hsa_m5C_192	chr6	41930263	41930264	+	ENST00000230340	C628	m5C	C26	5'-GGGUCCUAGAAGUGUACAGGGGGGUCCGGG-3'	(((((((.............)))))))... ( -5.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	30	chr6:41930239-41930268	BYSL	HGNC:1157	ENSG00000112578	GGGUCCUAGAAGUGUACAGGGGGGUCCGGG
hsa_m5C_193	chr5	55345177	55345178	+	ENST00000230640	C1115	m5C	C3	5'-GGCGGAAAGGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	30526041	13	chr5:55345176-55345188	MTREX	HGNC:18734	ENSG00000039123	GGCGGAAAGGAGG
hsa_m5C_194	chr5	140346531	140346532	-	ENST00000230990	C72	m5C	C15	5'-GGGUCGGGCGGCCGCGCGGGCGGG-3'	...........((((....)))). ( -7.30)	loop	mRNA	lung	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31061524	24	chr5:140346523-140346546	HBEGF	HGNC:3059	ENSG00000113070	GGGUCGGGCGGCCGCGCGGGCGGG
hsa_m5C_195	chr5	157740396	157740397	+	ENST00000231198	C1833	m5C	C6	5'-GGUAGCAGGUGUCAGAGGAGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr5:157740392-157740412	THG1L	HGNC:26053	ENSG00000113272	GGUAGCAGGUGUCAGAGGAGG
hsa_m5C_196	chr5	37291359	37291360	-	ENST00000231498	C4845	m5C	C7	5'-GGGAGGCUGAGGGAGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	16	chr5:37291351-37291366	NUP155	HGNC:8063	ENSG00000113569	GGGAGGCUGAGGGAGG
hsa_m5C_197	chr5	168486503	168486504	+	ENST00000231572	C34	m5C	C11	5'-GGAGGAUGGACGUACUGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	18	chr5:168486494-168486511	RARS1	HGNC:9870	ENSG00000113643	GGAGGAUGGACGUACUGG
hsa_m5C_198	chr3	47346433	47346434	+	ENST00000232766	C4240	m5C	C12	5'-GGCUGGUCUGGCUCUUUGG-3'	((((.....))))...... ( -1.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	19	chr3:47346423-47346441	KLHL18	HGNC:29120	ENSG00000114648	GGCUGGUCUGGCUCUUUGG
hsa_m5C_199	chr2	206121743	206121744	-	ENST00000233190	C4733	m5C	C9	5'-GGACCGGGCGCGGUGG-3'	..((((....)))).. ( -5.20)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	16	chr2:206121737-206121752	NDUFS1	HGNC:7707	ENSG00000023228	GGACCGGGCGCGGUGG
hsa_m5C_200	chr2	206121741	206121742	-	ENST00000233190	C4735	m5C	C11	5'-GGACCGGGCGCGGUGG-3'	..((((....)))).. ( -5.20)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	16	chr2:206121737-206121752	NDUFS1	HGNC:7707	ENSG00000023228	GGACCGGGCGCGGUGG
hsa_m5C_201	chr2	206119661	206119662	-	ENST00000233190	C6815	m5C	C12	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	15	chr2:206119659-206119673	NDUFS1	HGNC:7707	ENSG00000023228	GGAGGCCGAGGCAGG
hsa_m5C_202	chr2	112529079	112529080	+	ENST00000233336	C1608	m5C	C6	5'-GGGAACGGCAGGGCACUGG-3'	........(((....))). ( -2.50)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	19	chr2:112529075-112529093	TTL	HGNC:21586	ENSG00000114999	GGGAACGGCAGGGCACUGG
hsa_m5C_203	chr2	95402730	95402731	+	ENST00000233379	C24	m5C	C12	5'-GGUGAUCCGGCCGAGUGGCCCUGGG-3'	((....))((((....))))..... ( -8.00)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	25	chr2:95402720-95402744	FAHD2A	HGNC:24252	ENSG00000115042	GGUGAUCCGGCCGAGUGGCCCUGGG
hsa_m5C_204	chr2	216633612	216633613	+	ENST00000233809	C194	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	22344696	11	chr2:216633608-216633618	IGFBP2	HGNC:5471	ENSG00000115457	GGCGGCGGCGG
hsa_m5C_205	chr2	216633615	216633616	+	ENST00000233809	C197	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	11	chr2:216633608-216633618	IGFBP2	HGNC:5471	ENSG00000115457	GGCGGCGGCGG
hsa_m5C_206	chr2	85553037	85553038	-	ENST00000233838	C1253	m5C	C20	5'-GGACAAAUGGGCUGUAUGGCUAUUCCUGG-3'	(((......((((....))))..)))... ( -3.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr2:85553029-85553057	GGCX	HGNC:4247	ENSG00000115486	GGACAAAUGGGCUGUAUGGCUAUUCCUGG
hsa_m5C_207	chr2	102619757	102619758	+	ENST00000233969	C206	m5C	C4	5'-GGGCAGGGCGGAGCGGG-3'	..((........))... ( -1.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	17	chr2:102619755-102619771	SLC9A2	HGNC:11072	ENSG00000115616	GGGCAGGGCGGAGCGGG
hsa_m5C_208	chr2	102619762	102619763	+	ENST00000233969	C211	m5C	C9	5'-GGGCAGGGCGGAGCGGG-3'	..((........))... ( -1.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	17	chr2:102619755-102619771	SLC9A2	HGNC:11072	ENSG00000115616	GGGCAGGGCGGAGCGGG
hsa_m5C_209	chr2	102619767	102619768	+	ENST00000233969	C216	m5C	C14	5'-GGGCAGGGCGGAGCGGG-3'	..((........))... ( -1.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	17	chr2:102619755-102619771	SLC9A2	HGNC:11072	ENSG00000115616	GGGCAGGGCGGAGCGGG
hsa_m5C_210	chr1	109229501	109229502	+	ENST00000234677	C452	m5C	C21	5'-GGAGCGGAUAAAGUUGGAAGCAGAGCGG-3'	............(((........))).. ( -0.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr1:109229482-109229509	SARS1	HGNC:10537	ENSG00000031698	GGAGCGGAUAAAGUUGGAAGCAGAGCGG
hsa_m5C_211	chr1	109229506	109229507	+	ENST00000234677	C457	m5C	C26	5'-GGAGCGGAUAAAGUUGGAAGCAGAGCGG-3'	............(((........))).. ( -0.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr1:109229482-109229509	SARS1	HGNC:10537	ENSG00000031698	GGAGCGGAUAAAGUUGGAAGCAGAGCGG
hsa_m5C_212	chr1	147624166	147624167	+	ENST00000234739	C4140	m5C	C12	5'-GGGGGGCAGGGCAGCUUCCCAGGAGGG-3'	(((((((......)))))))....... (-11.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	27	chr1:147624156-147624182	BCL9	HGNC:1008	ENSG00000116128	GGGGGGCAGGGCAGCUUCCCAGGAGGG
hsa_m5C_213	chr1	32964421	32964422	-	ENST00000235150	C388	m5C	C4	5'-GGCCGAGGCGGAGG-3'	..(((...)))... ( -1.60)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	14	chr1:32964412-32964425	RNF19B	HGNC:26886	ENSG00000116514	GGCCGAGGCGGAGG
hsa_m5C_214	chr1	12031873	12031874	+	ENST00000235332	C1370	m5C	C12	5'-GGCAGGCGCACCCAGGAGAUGG-3'	.((....))..(((.....))) ( -1.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr1:12031863-12031884	MIIP	HGNC:25715	ENSG00000116691	GGCAGGCGCACCCAGGAGAUGG
hsa_m5C_215	chr1	12031874	12031875	+	ENST00000235332	C1371	m5C	C13	5'-GGCAGGCGCACCCAGGAGAUGG-3'	.((....))..(((.....))) ( -1.90)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	22	chr1:12031863-12031884	MIIP	HGNC:25715	ENSG00000116691	GGCAGGCGCACCCAGGAGAUGG
hsa_m5C_216	chr1	12019502	12019503	+	ENST00000235332	C6	m5C	C3	5'-GGCUCAGGCGGCUGCGG-3'	((((.....)))).... ( -2.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr1:12019501-12019517	MIIP	HGNC:25715	ENSG00000116691	GGCUCAGGCGGCUGCGG
hsa_m5C_217	chr1	12031980	12031981	+	ENST00000235332	C1477	m5C	C9	5'-GGGAGGACCCUGGGGUGGAGGGUGAGGG-3'	......(((((.......)))))..... ( -7.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	28	chr1:12031973-12032000	MIIP	HGNC:25715	ENSG00000116691	GGGAGGACCCUGGGGUGGAGGGUGAGGG
hsa_m5C_218	chr1	67001994	67001995	-	ENST00000235345	C3548	m5C	C6	5'-GGGGUCAGGUUCCCUAGG-3'	((((......)))).... ( -4.90)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr1:67001983-67002000	SLC35D1	HGNC:20800	ENSG00000116704	GGGGUCAGGUUCCCUAGG
hsa_m5C_219	chr20	36863078	36863079	-	ENST00000237536	C460	m5C	C28	5'-GGGCGCGCGGUGCGGGUGUGCGGGUGGCCGGGGUCCGCACCGGGG-3'	.......(((((((((....(((....)))...)))))))))... (-21.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	45	chr20:36863062-36863106	MTCL2	HGNC:16111	ENSG00000149639	GGGCGCGCGGUGCGGGUGUGCGGGUGGCCGGGGUCCGCACCGGGG
hsa_m5C_220	chr4	88067903	88067904	+	ENST00000237596	C2464	m5C	C8	5'-G^GAGGACCUGGAUUUGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr4:88065879-88065879;88067898-88067913	PKD2	HGNC:9009	ENSG00000118762	GGAGGACCUGGAUUUGG
hsa_m5C_221	chr14	94769204	94769205	-	ENST00000238558	C466	m5C	C5	5'-GGCCCCGGUUCGGUGCUGG-3'	(((.(((...))).))).. ( -5.40)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr14:94769191-94769209	GSC	HGNC:4612	ENSG00000133937	GGCCCCGGUUCGGUGCUGG
hsa_m5C_222	chr14	77027529	77027530	-	ENST00000238647	C1179	m5C	C12	5'-GGCUAAGGAAGCGGCGGCGG-3'	.(((.....)))........ ( -1.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr14:77027522-77027541	IRF2BPL	HGNC:14282	ENSG00000119669	GGCUAAGGAAGCGGCGGCGG
hsa_m5C_223	chr14	77027526	77027527	-	ENST00000238647	C1182	m5C	C15	5'-GGCUAAGGAAGCGGCGGCGG-3'	.(((.....)))........ ( -1.90)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	20	chr14:77027522-77027541	IRF2BPL	HGNC:14282	ENSG00000119669	GGCUAAGGAAGCGGCGGCGG
hsa_m5C_224	chr14	77027523	77027524	-	ENST00000238647	C1185	m5C	C18	5'-GGCUAAGGAAGCGGCGGCGG-3'	.(((.....)))........ ( -1.90)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	20	chr14:77027522-77027541	IRF2BPL	HGNC:14282	ENSG00000119669	GGCUAAGGAAGCGGCGGCGG
hsa_m5C_225	chr14	77026037	77026038	-	ENST00000238647	C2671	m5C	C4	5'-GGGCUUCGCGGCGCCGGGGCACGCGGCGGGGGG-3'	...((((((.(((........))).)))))).. (-14.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	33	chr14:77026009-77026041	IRF2BPL	HGNC:14282	ENSG00000119669	GGGCUUCGCGGCGCCGGGGCACGCGGCGGGGGG
hsa_m5C_226	chr14	77026019	77026020	-	ENST00000238647	C2689	m5C	C22	5'-GGGCUUCGCGGCGCCGGGGCACGCGGCGGGGGG-3'	...((((((.(((........))).)))))).. (-14.10)	loop	mRNA	293T;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database;RMVar database	28418038	33	chr14:77026009-77026041	IRF2BPL	HGNC:14282	ENSG00000119669	GGGCUUCGCGGCGCCGGGGCACGCGGCGGGGGG
hsa_m5C_227	chr14	77028160	77028161	-	ENST00000238647	C548	m5C	C11	5'-GGGGAGGGGGCCAAGAGGCAACGGCGG-3'	.........(((....)))........ ( -4.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	28418038	27	chr14:77028145-77028171	IRF2BPL	HGNC:14282	ENSG00000119669	GGGGAGGGGGCCAAGAGGCAACGGCGG
hsa_m5C_228	chr14	77026907	77026908	-	ENST00000238647	C1801	m5C	C15	5'-GGGGCUCCUGGGGGCCCCGCUUGUCUCGGGGGUACCCCGGG-3'	(((((((....)))))))......(((((((...))))))) (-24.60)	loop	mRNA	293T;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	41	chr14:77026882-77026922	IRF2BPL	HGNC:14282	ENSG00000119669	GGGGCUCCUGGGGGCCCCGCUUGUCUCGGGGGUACCCCGGG
hsa_m5C_229	chr14	77026906	77026907	-	ENST00000238647	C1802	m5C	C16	5'-GGGGCUCCUGGGGGCCCCGCUUGUCUCGGGGGUACCCCGGG-3'	(((((((....)))))))......(((((((...))))))) (-24.60)	loop	mRNA	293T;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	41	chr14:77026882-77026922	IRF2BPL	HGNC:14282	ENSG00000119669	GGGGCUCCUGGGGGCCCCGCUUGUCUCGGGGGUACCCCGGG
hsa_m5C_230	chr14	77026905	77026906	-	ENST00000238647	C1803	m5C	C17	5'-GGGGCUCCUGGGGGCCCCGCUUGUCUCGGGGGUACCCCGGG-3'	(((((((....)))))))......(((((((...))))))) (-24.60)	loop	mRNA	293T;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	41	chr14:77026882-77026922	IRF2BPL	HGNC:14282	ENSG00000119669	GGGGCUCCUGGGGGCCCCGCUUGUCUCGGGGGUACCCCGGG
hsa_m5C_231	chr14	77026887	77026888	-	ENST00000238647	C1821	m5C	C35	5'-GGGGCUCCUGGGGGCCCCGCUUGUCUCGGGGGUACCCCGGG-3'	(((((((....)))))))......(((((((...))))))) (-24.60)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	41	chr14:77026882-77026922	IRF2BPL	HGNC:14282	ENSG00000119669	GGGGCUCCUGGGGGCCCCGCUUGUCUCGGGGGUACCCCGGG
hsa_m5C_232	chr2	24084815	24084816	-	ENST00000238721	C19	m5C	C7	5'-GGGGCUCUGGGGCUCGGGCUUUGUCACCGGG-3'	......(((((((.........))).)))). ( -7.50)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	31	chr2:24084792-24084822	TP53I3	HGNC:19373	ENSG00000115129	GGGGCUCUGGGGCUCGGGCUUUGUCACCGGG
hsa_m5C_233	chr2	32308477	32308478	+	ENST00000238831	C3839	m5C	C6	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr2:32308473-32308487	YIPF4	HGNC:28145	ENSG00000119820	GGAGGCCGAGGCAGG
hsa_m5C_234	chr2	32308478	32308479	+	ENST00000238831	C3840	m5C	C7	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr2:32308473-32308487	YIPF4	HGNC:28145	ENSG00000119820	GGAGGCCGAGGCAGG
hsa_m5C_235	chr2	32308483	32308484	+	ENST00000238831	C3845	m5C	C12	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr2:32308473-32308487	YIPF4	HGNC:28145	ENSG00000119820	GGAGGCCGAGGCAGG
hsa_m5C_236	chr2	32308807	32308808	+	ENST00000238831	C4169	m5C	C7	5'-GGGAGGCCGAGGCGGG-3'	......(((...))). ( -1.70)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	16	chr2:32308802-32308817	YIPF4	HGNC:28145	ENSG00000119820	GGGAGGCCGAGGCGGG
hsa_m5C_237	chr2	32308808	32308809	+	ENST00000238831	C4170	m5C	C8	5'-GGGAGGCCGAGGCGGG-3'	......(((...))). ( -1.70)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	16	chr2:32308802-32308817	YIPF4	HGNC:28145	ENSG00000119820	GGGAGGCCGAGGCGGG
hsa_m5C_238	chr2	32308813	32308814	+	ENST00000238831	C4175	m5C	C13	5'-GGGAGGCCGAGGCGGG-3'	......(((...))). ( -1.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	16	chr2:32308802-32308817	YIPF4	HGNC:28145	ENSG00000119820	GGGAGGCCGAGGCGGG
hsa_m5C_239	chr17	48613093	48613094	-	ENST00000239144	C1428	m5C	C5	5'-GGGGCCAGGAGCCGG-3'	..(((.....))).. ( -3.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr17:48613084-48613098	HOXB8	HGNC:5119	ENSG00000120068	GGGGCCAGGAGCCGG
hsa_m5C_240	chr17	48613092	48613093	-	ENST00000239144	C1429	m5C	C6	5'-GGGGCCAGGAGCCGG-3'	..(((.....))).. ( -3.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr17:48613084-48613098	HOXB8	HGNC:5119	ENSG00000120068	GGGGCCAGGAGCCGG
hsa_m5C_241	chr5	172770792	172770793	-	ENST00000239223	C403	m5C	C3	5'-GGCGCCGGGCCAAGGGCGCCAUGG-3'	((((((........)))))).... (-14.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	24	chr5:172770772-172770795	DUSP1	HGNC:3064	ENSG00000120129	GGCGCCGGGCCAAGGGCGCCAUGG
hsa_m5C_242	chr5	172770790	172770791	-	ENST00000239223	C405	m5C	C5	5'-GGCGCCGGGCCAAGGGCGCCAUGG-3'	((((((........)))))).... (-14.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	24	chr5:172770772-172770795	DUSP1	HGNC:3064	ENSG00000120129	GGCGCCGGGCCAAGGGCGCCAUGG
hsa_m5C_243	chr5	172770789	172770790	-	ENST00000239223	C406	m5C	C6	5'-GGCGCCGGGCCAAGGGCGCCAUGG-3'	((((((........)))))).... (-14.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	24	chr5:172770772-172770795	DUSP1	HGNC:3064	ENSG00000120129	GGCGCCGGGCCAAGGGCGCCAUGG
hsa_m5C_244	chr5	172770778	172770779	-	ENST00000239223	C417	m5C	C17	5'-GGCGCCGGGCCAAGGGCGCCAUGG-3'	((((((........)))))).... (-14.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	24	chr5:172770772-172770795	DUSP1	HGNC:3064	ENSG00000120129	GGCGCCGGGCCAAGGGCGCCAUGG
hsa_m5C_245	chr5	172770776	172770777	-	ENST00000239223	C419	m5C	C19	5'-GGCGCCGGGCCAAGGGCGCCAUGG-3'	((((((........)))))).... (-14.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	24	chr5:172770772-172770795	DUSP1	HGNC:3064	ENSG00000120129	GGCGCCGGGCCAAGGGCGCCAUGG
hsa_m5C_246	chr5	172770775	172770776	-	ENST00000239223	C420	m5C	C20	5'-GGCGCCGGGCCAAGGGCGCCAUGG-3'	((((((........)))))).... (-14.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	24	chr5:172770772-172770795	DUSP1	HGNC:3064	ENSG00000120129	GGCGCCGGGCCAAGGGCGCCAUGG
hsa_m5C_247	chr5	172771169	172771170	-	ENST00000239223	C26	m5C	C13	5'-GGGCUGUGUGUGCGACGCGGGUCGGAGGGGCAGUCGGGGG-3'	.((((((.....((((....)))).....))))))..... (-14.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	40	chr5:172771143-172771182	DUSP1	HGNC:3064	ENSG00000120129	GGGCUGUGUGUGCGACGCGGGUCGGAGGGGCAGUCGGGGG
hsa_m5C_248	chr6	149863661	149863662	-	ENST00000239367	C698	m5C	C3	5'-GGCGCCGGCGGCCGUGCGGGGCUGGCGG-3'	..(((((((..((....)).))))))). (-15.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr6:149863637-149863664	LRP11	HGNC:16936	ENSG00000120256	GGCGCCGGCGGCCGUGCGGGGCUGGCGG
hsa_m5C_249	chr6	149863658	149863659	-	ENST00000239367	C701	m5C	C6	5'-GGCGCCGGCGGCCGUGCGGGGCUGGCGG-3'	..(((((((..((....)).))))))). (-15.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr6:149863637-149863664	LRP11	HGNC:16936	ENSG00000120256	GGCGCCGGCGGCCGUGCGGGGCUGGCGG
hsa_m5C_250	chr5	138345090	138345091	+	ENST00000239906	C597	m5C	C15	5'-GGCAGCCGGUGUGGCGG-3'	....(((.....))).. ( -3.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr5:138345077-138345093	FAM53C	HGNC:1336	ENSG00000120709	GGCAGCCGGUGUGGCGG
hsa_m5C_251	chr13	27271052	27271053	+	ENST00000241463	C224	m5C	C17	5'-GGUGCUGGGCGCCGGCCGCGUGGG-3'	(((((...)))))..((....)). ( -7.50)	bulge	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr13:27271037-27271060	RASL11A	HGNC:23802	ENSG00000122035	GGUGCUGGGCGCCGGCCGCGUGGG
hsa_m5C_252	chr1	51236470	51236471	+	ENST00000242719	C199	m5C	C8	5'-GGGGGGGCGGGGUGGGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	17	chr1:51236464-51236480	RNF11	HGNC:10056	ENSG00000123091	GGGGGGGCGGGGUGGGG
hsa_m5C_253	chr19	14450947	14450948	+	ENST00000242783	C1025	m5C	C7	5'-GGGAGGCUCUGGAGCGG-3'	.....(((....))).. ( -1.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	17	chr19:14450942-14450958	PKN1	HGNC:9405	ENSG00000123143	GGGAGGCUCUGGAGCGG
hsa_m5C_254	chr2	151420227	151420228	+	ENST00000243326	C1025	m5C	C11	5'-GGAGAAGAGGCAGUGAGGUGGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;rG4-seq:(High)	m6A-Atlas database	22344696	22	chr2:151420218-151420239	RIF1	HGNC:23207	ENSG00000080345	GGAGAAGAGGCAGUGAGGUGGG
hsa_m5C_255	chr2	219543657	219543658	-	ENST00000243776	C152	m5C	C11	5'-GGGGAGGGAGCGGGCCCGCCCGCGGG-3'	.(((.(((......))).)))..... (-10.80)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	26	chr2:219543643-219543668	CHPF	HGNC:24291	ENSG00000123989	GGGGAGGGAGCGGGCCCGCCCGCGGG
hsa_m5C_256	chr2	219543301	219543302	-	ENST00000243776	C508	m5C	C15	5'-GGGGCCGGCGAAGGCGCCGG-3'	((.(((......))).)).. (-10.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr2:219543297-219543316	CHPF	HGNC:24291	ENSG00000123989	GGGGCCGGCGAAGGCGCCGG
hsa_m5C_257	chr2	219543298	219543299	-	ENST00000243776	C511	m5C	C18	5'-GGGGCCGGCGAAGGCGCCGG-3'	((.(((......))).)).. (-10.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr2:219543297-219543316	CHPF	HGNC:24291	ENSG00000123989	GGGGCCGGCGAAGGCGCCGG
hsa_m5C_258	chr20	38765501	38765502	+	ENST00000243903	C1296	m5C	C24	5'-GGAAACACCUGGAGUGGAGAAGCCGG-3'	((.....((......)).....)).. ( -3.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr20:38765479-38765504	ACTR5	HGNC:14671	ENSG00000101442	GGAAACACCUGGAGUGGAGAAGCCGG
hsa_m5C_259	chr20	58309946	58309947	+	ENST00000244040	C233	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	11	chr20:58309942-58309952	RAB22A	HGNC:9764	ENSG00000124209	GGCGGCGGCGG
hsa_m5C_260	chr2	69895139	69895140	+	ENST00000244227	C110	m5C	C5	5'-GGCGCCGAGAAAGGUCCAGGUCUCGG-3'	....((((((..........)))))) ( -6.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr2:69895136-69895161	SNRNP27	HGNC:30240	ENSG00000124380	GGCGCCGAGAAAGGUCCAGGUCUCGG
hsa_m5C_261	chr2	69895150	69895151	+	ENST00000244227	C121	m5C	C16	5'-GGCGCCGAGAAAGGUCCAGGUCUCGG-3'	....((((((..........)))))) ( -6.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr2:69895136-69895161	SNRNP27	HGNC:30240	ENSG00000124380	GGCGCCGAGAAAGGUCCAGGUCUCGG
hsa_m5C_262	chr2	69895151	69895152	+	ENST00000244227	C122	m5C	C17	5'-GGCGCCGAGAAAGGUCCAGGUCUCGG-3'	....((((((..........)))))) ( -6.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr2:69895136-69895161	SNRNP27	HGNC:30240	ENSG00000124380	GGCGCCGAGAAAGGUCCAGGUCUCGG
hsa_m5C_263	chr6	44300230	44300231	-	ENST00000244571	C3298	m5C	C7	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr6:44300223-44300237	AARS2	HGNC:21022	ENSG00000124608	GGAGGCCGAGGCAGG
hsa_m5C_264	chr6	44300225	44300226	-	ENST00000244571	C3303	m5C	C12	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr6:44300223-44300237	AARS2	HGNC:21022	ENSG00000124608	GGAGGCCGAGGCAGG
hsa_m5C_265	chr6	21595205	21595206	+	ENST00000244745	C1456	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database	28418038	11	chr6:21595198-21595208	SOX4	HGNC:11200	ENSG00000124766	GGCGGCGGCGG
hsa_m5C_266	chr6	21595046	21595047	+	ENST00000244745	C1297	m5C	C25	5'-GGGCGGCCAUGGGGGCGGCGGCGGCGGCGGGAGCAGCAACGCGGG-3'	..((.(((.....))).)).(((((.((....)).))..)))... (-16.40)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	45	chr6:21595023-21595067	SOX4	HGNC:11200	ENSG00000124766	GGGCGGCCAUGGGGGCGGCGGCGGCGGCGGGAGCAGCAACGCGGG
hsa_m5C_267	chr6	7283499	7283500	-	ENST00000244763	C7304	m5C	C6	5'-GGAGGCCAAGGUGG-3'	NA	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	14	chr6:7283492-7283505	SSR1	HGNC:11323	ENSG00000124783	GGAGGCCAAGGUGG
hsa_m5C_268	chr6	7283498	7283499	-	ENST00000244763	C7305	m5C	C7	5'-GGAGGCCAAGGUGG-3'	NA	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr6:7283492-7283505	SSR1	HGNC:11323	ENSG00000124783	GGAGGCCAAGGUGG
hsa_m5C_269	chr6	7283364	7283365	-	ENST00000244763	C7439	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr6:7283356-7283370	SSR1	HGNC:11323	ENSG00000124783	GGAGGCUGAGGCAGG
hsa_m5C_270	chr5	132370190	132370191	+	ENST00000245407	C482	m5C	C11	5'-GGCUGCGGGACGGCCGCGAGG-3'	...(((((.....)))))... ( -7.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr5:132370181-132370201	SLC22A5	HGNC:10969	ENSG00000197375	GGCUGCGGGACGGCCGCGAGG
hsa_m5C_271	chr5	132482460	132482461	-	ENST00000245414	C2702	m5C	C17	5'-GGGAGGCAGAGGCGGGCGGAUCACG-3'	((...((........))...))... ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	25	chr5:132482453-132482477	IRF1	HGNC:6116	ENSG00000125347	GGGAGGCAGAGGCGGGCGGAUCACG
hsa_m5C_272	chr2	113712566	113712567	-	ENST00000245680	C4456	m5C	C8	5'-GGGAGGCCGAGGCGGG-3'	......(((...))). ( -1.70)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	16	chr2:113712559-113712574	SLC35F5	HGNC:23617	ENSG00000115084	GGGAGGCCGAGGCGGG
hsa_m5C_273	chr19	6682224	6682225	-	ENST00000245907	C4238	m5C	C6	5'-G^GUACCGGGGAGACCAGG-3'	....((.((....)).)) ( -3.50)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr19:6682213-6682229;6684388-6684388	C3	HGNC:1318	ENSG00000125730	GGUACCGGGGAGACCAGG
hsa_m5C_274	chr19	3192511	3192512	+	ENST00000246117	C328	m5C	C3	5'-GGCGGCGGAGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	30872485	11	chr19:3192510-3192520	NCLN	HGNC:26923	ENSG00000125912	GGCGGCGGAGG
hsa_m5C_275	chr19	3192514	3192515	+	ENST00000246117	C331	m5C	C6	5'-GGCGGCGGAGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	11	chr19:3192510-3192520	NCLN	HGNC:26923	ENSG00000125912	GGCGGCGGAGG
hsa_m5C_276	chrX	72301920	72301921	-	ENST00000246139	C960	m5C	C14	5'-GGGACUUUGGGGCCCAGGCGGGAGGGG-3'	(((.((....)))))............ ( -4.60)	loop	mRNA	293T	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31061524	27	chrX:72301908-72301934	CITED1	HGNC:1986	ENSG00000125931	GGGACUUUGGGGCCCAGGCGGGAGGGG
hsa_m5C_277	chr19	34404425	34404426	+	ENST00000246535	C28	m5C	C3	5'-GGCGGCCAUGGCGG-3'	.((.......)).. ( -1.40)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr19:34404424-34404437	PDCD2L	HGNC:28194	ENSG00000126249	GGCGGCCAUGGCGG
hsa_m5C_278	chr19	47745563	47745564	+	ENST00000246802	C19	m5C	C3	5'-GGCGGCAGGAGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	12	chr19:47745562-47745573	NOP53	HGNC:4333	ENSG00000105373	GGCGGCAGGAGG
hsa_m5C_279	chr19	18869181	18869182	-	ENST00000247005	C1942	m5C	C25	5'-GGGCCAGGGCGCGGGCGCGGACCCCGGG-3'	...((.(((..((....))..))).)). (-10.20)	loop	mRNA	Muscle,Testis;HeLa,rip antibody: ALYREF;Muscle;HeLa,siControl	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	28	chr19:18869179-18869206	GDF1	HGNC:4214	ENSG00000130283	GGGCCAGGGCGCGGGCGCGGACCCCGGG
hsa_m5C_280	chr14	55369304	55369305	-	ENST00000247178	C1801	m5C	C15	5'-GGGUUCCCUCUGGGCCCGGGCCACCGGG-3'	.....(((...)))(((((....))))) (-11.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	28	chr14:55369292-55369319	ATG14	HGNC:19962	ENSG00000126775	GGGUUCCCUCUGGGCCCGGGCCACCGGG
hsa_m5C_281	chr14	55369303	55369304	-	ENST00000247178	C1802	m5C	C16	5'-GGGUUCCCUCUGGGCCCGGGCCACCGGG-3'	.....(((...)))(((((....))))) (-11.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	28	chr14:55369292-55369319	ATG14	HGNC:19962	ENSG00000126775	GGGUUCCCUCUGGGCCCGGGCCACCGGG
hsa_m5C_282	chr14	55369302	55369303	-	ENST00000247178	C1803	m5C	C17	5'-GGGUUCCCUCUGGGCCCGGGCCACCGGG-3'	.....(((...)))(((((....))))) (-11.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	28	chr14:55369292-55369319	ATG14	HGNC:19962	ENSG00000126775	GGGUUCCCUCUGGGCCCGGGCCACCGGG
hsa_m5C_283	chr7	149431693	149431694	-	ENST00000247930	C2841	m5C	C3	5'-GGCGGGGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	11	chr7:149431686-149431696	ZNF777	HGNC:22213	ENSG00000196453	GGCGGGGGCGG
hsa_m5C_284	chr7	149431687	149431688	-	ENST00000247930	C2847	m5C	C9	5'-GGCGGGGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	11	chr7:149431686-149431696	ZNF777	HGNC:22213	ENSG00000196453	GGCGGGGGCGG
hsa_m5C_285	chr7	149460817	149460818	-	ENST00000247930	C245	m5C	C24	5'-GGGUGCCUGGGCAGGCGAGGACCCCAG-3'	((((((((....))))....))))... ( -9.00)	bulge	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr7:149460815-149460841	ZNF777	HGNC:22213	ENSG00000196453	GGGUGCCUGGGCAGGCGAGGACCCCAG
hsa_m5C_286	chr19	9849451	9849452	+	ENST00000247970	C772	m5C	C12	5'-GGGGUGGGAGGCUCCCAGACCCAGGGCAGUGUGGUGGG-3'	(((.(((((...)))))..)))................ (-11.60)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	38	chr19:9849441-9849478	PIN1	HGNC:8988	ENSG00000127445	GGGGUGGGAGGCUCCCAGACCCAGGGCAGUGUGGUGGG
hsa_m5C_287	chr16	1701040	1701041	+	ENST00000248098	C2650	m5C	C3	5'-GGCAGUGGGGUGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	13	chr16:1701039-1701051	JPT2	HGNC:14137	ENSG00000206053	GGCAGUGGGGUGG
hsa_m5C_288	chr16	1987368	1987369	+	ENST00000248114	C1985	m5C	C10	5'-GGCGCAGGCCCACCUUGGCAUGG-3'	.((..(((....)))..)).... ( -5.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr16:1987360-1987382	GFER	HGNC:4236	ENSG00000127554	GGCGCAGGCCCACCUUGGCAUGG
hsa_m5C_289	chr16	1987369	1987370	+	ENST00000248114	C1986	m5C	C11	5'-GGCGCAGGCCCACCUUGGCAUGG-3'	.((..(((....)))..)).... ( -5.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr16:1987360-1987382	GFER	HGNC:4236	ENSG00000127554	GGCGCAGGCCCACCUUGGCAUGG
hsa_m5C_290	chr16	77200095	77200096	+	ENST00000248248	C3511	m5C	C7	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr16:77200090-77200104	MON1B	HGNC:25020	ENSG00000103111	GGGAGGCCGAGGCGG
hsa_m5C_291	chr16	77200096	77200097	+	ENST00000248248	C3512	m5C	C8	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr16:77200090-77200104	MON1B	HGNC:25020	ENSG00000103111	GGGAGGCCGAGGCGG
hsa_m5C_292	chr16	77200101	77200102	+	ENST00000248248	C3517	m5C	C13	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr16:77200090-77200104	MON1B	HGNC:25020	ENSG00000103111	GGGAGGCCGAGGCGG
hsa_m5C_293	chr2	218437125	218437126	+	ENST00000248444	C2031	m5C	C10	5'-GGACCAG^GUCUUCUUCUGGAUUGG-3'	...(((((......)))))..... ( -5.70)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr2:218436620-218436626;218437124-218437140	VIL1	HGNC:12690	ENSG00000127831	GGACCAGGUCUUCUUCUGGAUUGG
hsa_m5C_294	chr19	39307254	39307255	-	ENST00000248668	C2890	m5C	C4	5'-GGGCCGGGGCGAGG-3'	..((....)).... ( -0.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr19:39307245-39307258	LRFN1	HGNC:29290	ENSG00000128011	GGGCCGGGGCGAGG
hsa_m5C_295	chr19	39307253	39307254	-	ENST00000248668	C2891	m5C	C5	5'-GGGCCGGGGCGAGG-3'	..((....)).... ( -0.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr19:39307245-39307258	LRFN1	HGNC:29290	ENSG00000128011	GGGCCGGGGCGAGG
hsa_m5C_296	chr19	39307953	39307954	-	ENST00000248668	C2191	m5C	C18	5'-GGGGAGGAGUCUCGGGCCGCGG-3'	.((((....))))......... ( -3.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	22	chr19:39307950-39307971	LRFN1	HGNC:29290	ENSG00000128011	GGGGAGGAGUCUCGGGCCGCGG
hsa_m5C_297	chr22	20314759	20314760	-	ENST00000248879	C650	m5C	C4	5'-GGGCAGGGAAUGCAGCCCUGGGACUGGG-3'	...(((((.......)))))........ ( -7.50)	loop	mRNA	heart,Testis;293T;HeLa	UBS-seq:(High);RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	30872485;38168991	28	chr22:20314736-20314763	DGCR6L	HGNC:18551	ENSG00000128185	GGGCAGGGAAUGCAGCCCUGGGACUGGG
hsa_m5C_298	chr22	21642310	21642311	+	ENST00000248958	C10	m5C	C6	5'-GGGCCCGAGGGGCUGGAGCCGGGCCGGGG-3'	.(((((....(((....)))))))).... (-13.40)	bulge	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	29	chr22:21642306-21642334	SDF2L1	HGNC:10676	ENSG00000128228	GGGCCCGAGGGGCUGGAGCCGGGCCGGGG
hsa_m5C_299	chr22	21642308	21642309	+	ENST00000248958	C8	m5C	C4	5'-GGGCCCGAGGGGCUGGAGCCGGGCCGGGG-3'	.(((((....(((....)))))))).... (-13.40)	bulge	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr22:21642306-21642334	SDF2L1	HGNC:10676	ENSG00000128228	GGGCCCGAGGGGCUGGAGCCGGGCCGGGG
hsa_m5C_300	chr22	21642309	21642310	+	ENST00000248958	C9	m5C	C5	5'-GGGCCCGAGGGGCUGGAGCCGGGCCGGGG-3'	.(((((....(((....)))))))).... (-13.40)	bulge	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	29	chr22:21642306-21642334	SDF2L1	HGNC:10676	ENSG00000128228	GGGCCCGAGGGGCUGGAGCCGGGCCGGGG
hsa_m5C_301	chr22	30242386	30242387	-	ENST00000249075	C1937	m5C	C5	5'-GGGUCGGAUCUGAGAGAAUGGGGAGGCCUGAGUGGGAGUGGGGG-3'	(((((...(((........)))..)))))............... ( -6.90)	bulge	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	44	chr22:30242348-30242391	LIF	HGNC:6596	ENSG00000128342	GGGUCGGAUCUGAGAGAAUGGGGAGGCCUGAGUGGGAGUGGGGG
hsa_m5C_302	chr7	103297472	103297473	+	ENST00000249269	C39	m5C	C12	5'-GGCGGCUGCGGCGG-3'	....((....)).. ( -2.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr7:103297462-103297475	PMPCB	HGNC:9119	ENSG00000105819	GGCGGCUGCGGCGG
hsa_m5C_303	chr2	176122871	176122872	+	ENST00000249499	C154	m5C	C26	5'-GGCCAUGAGGGCGACGAGGUGUUCGCGG-3'	..((.((((.((......)).)))).)) ( -7.60)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	28	chr2:176122847-176122874	HOXD9	HGNC:5140	ENSG00000128709	GGCCAUGAGGGCGACGAGGUGUUCGCGG
hsa_m5C_304	chr15	52552011	52552012	-	ENST00000249822	C399	m5C	C16	5'-GGAUAAGACGGAGGUCACUGG-3'	......(((....)))..... ( -2.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	21	chr15:52552007-52552027	ARPP19	HGNC:16967	ENSG00000128989	GGAUAAGACGGAGGUCACUGG
hsa_m5C_305	chr14	37591692	37591693	-	ENST00000250448	C1368	m5C	C4	5'-GGCCCGGGGCGCUGG-3'	...((((....)))) ( -3.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr14:37591682-37591696	FOXA1	HGNC:5021	ENSG00000129514	GGCCCGGGGCGCUGG
hsa_m5C_306	chr14	37591691	37591692	-	ENST00000250448	C1369	m5C	C5	5'-GGCCCGGGGCGCUGG-3'	...((((....)))) ( -3.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr14:37591682-37591696	FOXA1	HGNC:5021	ENSG00000129514	GGCCCGGGGCGCUGG
hsa_m5C_307	chr14	37595004	37595005	-	ENST00000250448	C245	m5C	C4	5'-GGGCUGGAUGGUUGUAUUGGGCAGGG-3'	..(((.((((....)))).))).... ( -6.50)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	26	chr14:37594983-37595008	FOXA1	HGNC:5021	ENSG00000129514	GGGCUGGAUGGUUGUAUUGGGCAGGG
hsa_m5C_308	chr14	37591962	37591963	-	ENST00000250448	C1098	m5C	C5	5'-GGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGG-3'	....((.((.......)).)).((....))... ( -7.30)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;RMVar database	28418038	33	chr14:37591935-37591967	FOXA1	HGNC:5021	ENSG00000129514	GGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGG
hsa_m5C_309	chr14	37591961	37591962	-	ENST00000250448	C1099	m5C	C6	5'-GGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGG-3'	....((.((.......)).)).((....))... ( -7.30)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;RMVar database	28418038	33	chr14:37591935-37591967	FOXA1	HGNC:5021	ENSG00000129514	GGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGG
hsa_m5C_310	chr14	37591958	37591959	-	ENST00000250448	C1102	m5C	C9	5'-GGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGG-3'	....((.((.......)).)).((....))... ( -7.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	28418038	33	chr14:37591935-37591967	FOXA1	HGNC:5021	ENSG00000129514	GGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGG
hsa_m5C_311	chr14	37591955	37591956	-	ENST00000250448	C1105	m5C	C12	5'-GGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGG-3'	....((.((.......)).)).((....))... ( -7.30)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	33	chr14:37591935-37591967	FOXA1	HGNC:5021	ENSG00000129514	GGGGCCGGCGGCGGGGGCGGGAGCGGAAGCGGG
hsa_m5C_312	chr11	3667500	3667501	-	ENST00000250699	C698	m5C	C11	5'-GGCAUGCCGGCGCGGCGG-3'	.....((((...)))).. ( -5.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	18	chr11:3667494-3667511	CHRNA10	HGNC:13800	ENSG00000129749	GGCAUGCCGGCGCGGCGG
hsa_m5C_313	chr11	3667498	3667499	-	ENST00000250699	C700	m5C	C13	5'-GGCAUGCCGGCGCGGCGG-3'	.....((((...)))).. ( -5.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	18	chr11:3667494-3667511	CHRNA10	HGNC:13800	ENSG00000129749	GGCAUGCCGGCGCGGCGG
hsa_m5C_314	chr11	3667495	3667496	-	ENST00000250699	C703	m5C	C16	5'-GGCAUGCCGGCGCGGCGG-3'	.....((((...)))).. ( -5.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	18	chr11:3667494-3667511	CHRNA10	HGNC:13800	ENSG00000129749	GGCAUGCCGGCGCGGCGG
hsa_m5C_315	chr19	2039191	2039192	-	ENST00000250896	C2064	m5C	C10	5'-GGAGGGGCACAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	13	chr19:2039189-2039201	MKNK2	HGNC:7111	ENSG00000099875	GGAGGGGCACAGG
hsa_m5C_316	chr19	19564987	19564988	-	ENST00000251203	C928	m5C	C7	5'-GGAUACCACGGAAGUUGGGGUCCCAGG-3'	((((.((((....)).)).)))).... ( -7.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr19:19564968-19564994	PBX4	HGNC:13403	ENSG00000105717	GGAUACCACGGAAGUUGGGGUCCCAGG
hsa_m5C_317	chr19	590293	590294	+	ENST00000251287	C414	m5C	C12	5'-GGCCCGAGGGCCCGGCGCGGG-3'	((((....))))......... ( -7.30)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr19:590283-590303	HCN2	HGNC:4846	ENSG00000099822	GGCCCGAGGGCCCGGCGCGGG
hsa_m5C_318	chr19	590294	590295	+	ENST00000251287	C415	m5C	C13	5'-GGCCCGAGGGCCCGGCGCGGG-3'	((((....))))......... ( -7.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	21	chr19:590283-590303	HCN2	HGNC:4846	ENSG00000099822	GGCCCGAGGGCCCGGCGCGGG
hsa_m5C_319	chr19	590297	590298	+	ENST00000251287	C418	m5C	C16	5'-GGCCCGAGGGCCCGGCGCGGG-3'	((((....))))......... ( -7.30)	loop	mRNA	SNB19;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	21	chr19:590283-590303	HCN2	HGNC:4846	ENSG00000099822	GGCCCGAGGGCCCGGCGCGGG
hsa_m5C_320	chr19	590299	590300	+	ENST00000251287	C420	m5C	C18	5'-GGCCCGAGGGCCCGGCGCGGG-3'	((((....))))......... ( -7.30)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr19:590283-590303	HCN2	HGNC:4846	ENSG00000099822	GGCCCGAGGGCCCGGCGCGGG
hsa_m5C_321	chr19	589901	589902	+	ENST00000251287	C22	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969	11	chr19:589897-589907	HCN2	HGNC:4846	ENSG00000099822	GGCGGCGGCGG
hsa_m5C_322	chr19	589904	589905	+	ENST00000251287	C25	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	11	chr19:589897-589907	HCN2	HGNC:4846	ENSG00000099822	GGCGGCGGCGG
hsa_m5C_323	chr19	616496	616497	+	ENST00000251287	C2758	m5C	C4	5'-GGGCCCAGGCGGGCCGGGGGCGGGG-3'	.(((((....))))).......... (-10.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	25	chr19:616494-616518	HCN2	HGNC:4846	ENSG00000099822	GGGCCCAGGCGGGCCGGGGGCGGGG
hsa_m5C_324	chr19	616507	616508	+	ENST00000251287	C2769	m5C	C15	5'-GGGCCCAGGCGGGCCGGGGGCGGGG-3'	.(((((....))))).......... (-10.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database	31358969	25	chr19:616494-616518	HCN2	HGNC:4846	ENSG00000099822	GGGCCCAGGCGGGCCGGGGGCGGGG
hsa_m5C_325	chr17	42666453	42666454	+	ENST00000251412	C1348	m5C	C22	5'-GGCCCACCGGGUCAGCGGGCUCAUGAUGG-3'	(((((...)))))................ ( -6.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr17:42666433-42666461	TUBG2	HGNC:12419	ENSG00000037042	GGCCCACCGGGUCAGCGGGCUCAUGAUGG
hsa_m5C_326	chr7	158737108	158737109	-	ENST00000251527	C2485	m5C	C3	5'-GGCGGUCAGGAAGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	14	chr7:158737098-158737111	ESYT2	HGNC:22211	ENSG00000117868	GGCGGUCAGGAAGG
hsa_m5C_327	chr7	158737104	158737105	-	ENST00000251527	C2489	m5C	C7	5'-GGCGGUCAGGAAGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr7:158737098-158737111	ESYT2	HGNC:22211	ENSG00000117868	GGCGGUCAGGAAGG
hsa_m5C_328	chr7	158829371	158829372	-	ENST00000251527	C257	m5C	C27	5'-GGGCCCGGAGGCGGGCGCCGGCGGGGCUGGGGG-3'	..(((((....))))).(((((...)))))... (-16.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	33	chr7:158829366-158829398	ESYT2	HGNC:22211	ENSG00000117868	GGGCCCGGAGGCGGGCGCCGGCGGGGCUGGGGG
hsa_m5C_329	chr5	179132885	179132886	-	ENST00000251582	C2233	m5C	C26	5'-GGGACUGCAGG^AAGGUGGGCUGUGACGG-3'	......((((.........))))..... ( -2.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	28	chr5:179132884-179132900;179135909-179135919	ADAMTS2	HGNC:218	ENSG00000087116	GGGACUGCAGGAAGGUGGGCUGUGACGG
hsa_m5C_330	chr6	43224491	43224492	+	ENST00000252050	C7664	m5C	C5	5'-GGGGCUGAGGGGGCGGGAGCUGCCCCUGUCAUAGGGAGGGGG-3'	..(((...((((((((...)))))))))))............ (-15.20)	bulge	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	42	chr6:43224488-43224529	CUL9	HGNC:15982	ENSG00000112659	GGGGCUGAGGGGGCGGGAGCUGCCCCUGUCAUAGGGAGGGGG
hsa_m5C_331	chr22	19131094	19131095	-	ENST00000252137	C4543	m5C	C9	5'-GGACAGGACUCUGGUGG-3'	...(((....))).... ( -1.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	17	chr22:19131087-19131103	ESS2	HGNC:16817	ENSG00000100056	GGACAGGACUCUGGUGG
hsa_m5C_332	chr22	19134107	19134108	-	ENST00000252137	C1530	m5C	C6	5'-GGGGCCCAGGCCUGG-3'	.((((....)))).. ( -5.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr22:19134099-19134113	ESS2	HGNC:16817	ENSG00000100056	GGGGCCCAGGCCUGG
hsa_m5C_333	chr22	19134106	19134107	-	ENST00000252137	C1531	m5C	C7	5'-GGGGCCCAGGCCUGG-3'	.((((....)))).. ( -5.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr22:19134099-19134113	ESS2	HGNC:16817	ENSG00000100056	GGGGCCCAGGCCUGG
hsa_m5C_334	chr19	44908969	44908970	+	ENST00000252486	C743	m5C	C9	5'-GGAGCGGGCCCAGGCCUGGG-3'	....(((((....))))).. ( -8.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr19:44908962-44908981	APOE	HGNC:613	ENSG00000130203	GGAGCGGGCCCAGGCCUGGG
hsa_m5C_335	chr19	44908970	44908971	+	ENST00000252486	C744	m5C	C10	5'-GGAGCGGGCCCAGGCCUGGG-3'	....(((((....))))).. ( -8.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr19:44908962-44908981	APOE	HGNC:613	ENSG00000130203	GGAGCGGGCCCAGGCCUGGG
hsa_m5C_336	chr19	44908971	44908972	+	ENST00000252486	C745	m5C	C11	5'-GGAGCGGGCCCAGGCCUGGG-3'	....(((((....))))).. ( -8.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr19:44908962-44908981	APOE	HGNC:613	ENSG00000130203	GGAGCGGGCCCAGGCCUGGG
hsa_m5C_337	chr19	44908975	44908976	+	ENST00000252486	C749	m5C	C15	5'-GGAGCGGGCCCAGGCCUGGG-3'	....(((((....))))).. ( -8.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr19:44908962-44908981	APOE	HGNC:613	ENSG00000130203	GGAGCGGGCCCAGGCCUGGG
hsa_m5C_338	chr19	44908976	44908977	+	ENST00000252486	C750	m5C	C16	5'-GGAGCGGGCCCAGGCCUGGG-3'	....(((((....))))).. ( -8.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr19:44908962-44908981	APOE	HGNC:613	ENSG00000130203	GGAGCGGGCCCAGGCCUGGG
hsa_m5C_339	chr19	44908848	44908849	+	ENST00000252486	C622	m5C	C11	5'-GGCCGGGGCCCGCGAGG-3'	(((....)))....... ( -2.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	17	chr19:44908839-44908855	APOE	HGNC:613	ENSG00000130203	GGCCGGGGCCCGCGAGG
hsa_m5C_340	chr19	17405419	17405420	-	ENST00000252593	C211	m5C	C4	5'-GGCCUGCCGGGACGGCCUUCGG-3'	((((.........))))..... ( -6.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr19:17405402-17405423	BST2	HGNC:1119	ENSG00000130303	GGCCUGCCGGGACGGCCUUCGG
hsa_m5C_341	chr19	17249440	17249441	-	ENST00000252597	C3019	m5C	C3	5'-GGCGGGGAGG-3'	NA	loop	mRNA	lung,spleen;lung	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	10	chr19:17249434-17249443	USHBP1	HGNC:24058	ENSG00000130307	GGCGGGGAGG
hsa_m5C_342	chr19	17582828	17582829	+	ENST00000252599	C3319	m5C	C3	5'-GGCGCCAGUUGGAGACGGGGGCUGGG-3'	(((.((.(((...))).)).)))... ( -8.30)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	26	chr19:17582827-17582852	COLGALT1	HGNC:26182	ENSG00000130309	GGCGCCAGUUGGAGACGGGGGCUGGG
hsa_m5C_343	chr19	17582830	17582831	+	ENST00000252599	C3321	m5C	C5	5'-GGCGCCAGUUGGAGACGGGGGCUGGG-3'	(((.((.(((...))).)).)))... ( -8.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	26	chr19:17582827-17582852	COLGALT1	HGNC:26182	ENSG00000130309	GGCGCCAGUUGGAGACGGGGGCUGGG
hsa_m5C_344	chr19	6279809	6279810	-	ENST00000252674	C166	m5C	C5	5'-GGGGCCCGGGGGCGGGGCGGGG-3'	...((((.......)))).... ( -8.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	22	chr19:6279793-6279814	MLLT1	HGNC:7134	ENSG00000130382	GGGGCCCGGGGGCGGGGCGGGG
hsa_m5C_345	chr19	6279807	6279808	-	ENST00000252674	C168	m5C	C7	5'-GGGGCCCGGGGGCGGGGCGGGG-3'	...((((.......)))).... ( -8.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	22	chr19:6279793-6279814	MLLT1	HGNC:7134	ENSG00000130382	GGGGCCCGGGGGCGGGGCGGGG
hsa_m5C_346	chr19	6279796	6279797	-	ENST00000252674	C179	m5C	C18	5'-GGGGCCCGGGGGCGGGGCGGGG-3'	...((((.......)))).... ( -8.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	22	chr19:6279793-6279814	MLLT1	HGNC:7134	ENSG00000130382	GGGGCCCGGGGGCGGGGCGGGG
hsa_m5C_347	chr19	6212260	6212261	-	ENST00000252674	C2652	m5C	C8	5'-GGGGCUCCCGGGGGGGUCAGCCAACACUACAAAGGG-3'	..(((((((....)))..)))).............. (-10.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	36	chr19:6212233-6212268	MLLT1	HGNC:7134	ENSG00000130382	GGGGCUCCCGGGGGGGUCAGCCAACACUACAAAGGG
hsa_m5C_348	chr19	6212259	6212260	-	ENST00000252674	C2653	m5C	C9	5'-GGGGCUCCCGGGGGGGUCAGCCAACACUACAAAGGG-3'	..(((((((....)))..)))).............. (-10.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	36	chr19:6212233-6212268	MLLT1	HGNC:7134	ENSG00000130382	GGGGCUCCCGGGGGGGUCAGCCAACACUACAAAGGG
hsa_m5C_349	chr5	61332715	61332716	+	ENST00000252744	C459	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969	11	chr5:61332714-61332724	ZSWIM6	HGNC:29316	ENSG00000130449	GGCGGCGGCGG
hsa_m5C_350	chr5	61332718	61332719	+	ENST00000252744	C462	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	11	chr5:61332714-61332724	ZSWIM6	HGNC:29316	ENSG00000130449	GGCGGCGGCGG
hsa_m5C_351	chr5	61332721	61332722	+	ENST00000252744	C465	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	11	chr5:61332714-61332724	ZSWIM6	HGNC:29316	ENSG00000130449	GGCGGCGGCGG
hsa_m5C_352	chr5	61332700	61332701	+	ENST00000252744	C444	m5C	C6	5'-GGUGGCGGCGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	11	chr5:61332696-61332706	ZSWIM6	HGNC:29316	ENSG00000130449	GGUGGCGGCGG
hsa_m5C_353	chr5	61332703	61332704	+	ENST00000252744	C447	m5C	C9	5'-GGUGGCGGCGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	11	chr5:61332696-61332706	ZSWIM6	HGNC:29316	ENSG00000130449	GGUGGCGGCGG
hsa_m5C_354	chr16	30532378	30532379	-	ENST00000252799	C1924	m5C	C12	5'-GGCCUGGGGUGCGG-3'	.(((...))).... ( -0.70)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	14	chr16:30532377-30532390	ZNF747	HGNC:28350	ENSG00000169955	GGCCUGGGGUGCGG
hsa_m5C_355	chr16	30534720	30534721	-	ENST00000252799	C627	m5C	C19	5'-GGGCCGGGGAAGUGUUCUCGGGCGCGGG-3'	..(((.(((((...))))).)))..... (-10.70)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins	m5C-RIP-seq:(Medium)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	31061524	28	chr16:30534712-30534739	ZNF747	HGNC:28350	ENSG00000169955	GGGCCGGGGAAGUGUUCUCGGGCGCGGG
hsa_m5C_356	chr2	1634201	1634202	-	ENST00000252804	C4502	m5C	C22	5'-GGGCGGAGGAAAAGCCCUAGGCUCCUGG-3'	((((..(((......)))..)))).... ( -8.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr2:1634196-1634223	PXDN	HGNC:14966	ENSG00000130508	GGGCGGAGGAAAAGCCCUAGGCUCCUGG
hsa_m5C_357	chr2	1634199	1634200	-	ENST00000252804	C4504	m5C	C24	5'-GGGCGGAGGAAAAGCCCUAGGCUCCUGG-3'	((((..(((......)))..)))).... ( -8.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr2:1634196-1634223	PXDN	HGNC:14966	ENSG00000130508	GGGCGGAGGAAAAGCCCUAGGCUCCUGG
hsa_m5C_358	chr19	18280930	18280931	-	ENST00000252818	C692	m5C	C9	5'-GGCCCCGGCGGCGG-3'	.(((.....))).. ( -3.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr19:18280926-18280939	JUND	HGNC:6206	ENSG00000130522	GGCCCCGGCGGCGG
hsa_m5C_359	chr19	18280927	18280928	-	ENST00000252818	C695	m5C	C12	5'-GGCCCCGGCGGCGG-3'	.(((.....))).. ( -3.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	14	chr19:18280926-18280939	JUND	HGNC:6206	ENSG00000130522	GGCCCCGGCGGCGG
hsa_m5C_360	chr19	18280878	18280879	-	ENST00000252818	C744	m5C	C4	5'-GGGCGGCGCCGGGGGCGCGGGGGG-3'	.....(((((...)))))...... ( -8.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	24	chr19:18280859-18280882	JUND	HGNC:6206	ENSG00000130522	GGGCGGCGCCGGGGGCGCGGGGGG
hsa_m5C_361	chr19	18280875	18280876	-	ENST00000252818	C747	m5C	C7	5'-GGGCGGCGCCGGGGGCGCGGGGGG-3'	.....(((((...)))))...... ( -8.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	24	chr19:18280859-18280882	JUND	HGNC:6206	ENSG00000130522	GGGCGGCGCCGGGGGCGCGGGGGG
hsa_m5C_362	chr19	18280873	18280874	-	ENST00000252818	C749	m5C	C9	5'-GGGCGGCGCCGGGGGCGCGGGGGG-3'	.....(((((...)))))...... ( -8.70)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	24	chr19:18280859-18280882	JUND	HGNC:6206	ENSG00000130522	GGGCGGCGCCGGGGGCGCGGGGGG
hsa_m5C_363	chr19	18280872	18280873	-	ENST00000252818	C750	m5C	C10	5'-GGGCGGCGCCGGGGGCGCGGGGGG-3'	.....(((((...)))))...... ( -8.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	24	chr19:18280859-18280882	JUND	HGNC:6206	ENSG00000130522	GGGCGGCGCCGGGGGCGCGGGGGG
hsa_m5C_364	chr19	7086790	7086791	+	ENST00000252840	C4582	m5C	C7	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	HeLa	BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	31061524	15	chr19:7086785-7086799	ZNF557	HGNC:28632	ENSG00000130544	GGAGGCCGAGGCAGG
hsa_m5C_365	chr22	45672067	45672068	+	ENST00000252934	C235	m5C	C11	5'-GGCAAGAUGGCGGCGCCCAGG-3'	(((...........))).... ( -2.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	21	chr22:45672058-45672078	ATXN10	HGNC:10549	ENSG00000130638	GGCAAGAUGGCGGCGCCCAGG
hsa_m5C_366	chr22	45672070	45672071	+	ENST00000252934	C238	m5C	C14	5'-GGCAAGAUGGCGGCGCCCAGG-3'	(((...........))).... ( -2.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	21	chr22:45672058-45672078	ATXN10	HGNC:10549	ENSG00000130638	GGCAAGAUGGCGGCGCCCAGG
hsa_m5C_367	chr20	62064846	62064847	-	ENST00000252996	C1035	m5C	C4	5'-GGCCCCGCGGGGGUCAGCGGCCAACCCGG-3'	((((((...))))))..(((.....))). (-12.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr20:62064822-62064850	TAF4	HGNC:11537	ENSG00000130699	GGCCCCGCGGGGGUCAGCGGCCAACCCGG
hsa_m5C_368	chr20	62064844	62064845	-	ENST00000252996	C1037	m5C	C6	5'-GGCCCCGCGGGGGUCAGCGGCCAACCCGG-3'	((((((...))))))..(((.....))). (-12.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr20:62064822-62064850	TAF4	HGNC:11537	ENSG00000130699	GGCCCCGCGGGGGUCAGCGGCCAACCCGG
hsa_m5C_369	chr20	62064842	62064843	-	ENST00000252996	C1039	m5C	C8	5'-GGCCCCGCGGGGGUCAGCGGCCAACCCGG-3'	((((((...))))))..(((.....))). (-12.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr20:62064822-62064850	TAF4	HGNC:11537	ENSG00000130699	GGCCCCGCGGGGGUCAGCGGCCAACCCGG
hsa_m5C_370	chr20	62064823	62064824	-	ENST00000252996	C1058	m5C	C27	5'-GGCCCCGCGGGGGUCAGCGGCCAACCCGG-3'	((((((...))))))..(((.....))). (-12.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr20:62064822-62064850	TAF4	HGNC:11537	ENSG00000130699	GGCCCCGCGGGGGUCAGCGGCCAACCCGG
hsa_m5C_371	chr20	62318901	62318902	-	ENST00000252999	C7050	m5C	C13	5'-GGGAGAUGCGGGCCCGGGACCUGGG-3'	............(((((...))))) ( -4.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	30872485	25	chr20:62318890-62318914	LAMA5	HGNC:6485	ENSG00000130702	GGGAGAUGCGGGCCCGGGACCUGGG
hsa_m5C_372	chr20	62318900	62318901	-	ENST00000252999	C7051	m5C	C14	5'-GGGAGAUGCGGGCCCGGGACCUGGG-3'	............(((((...))))) ( -4.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	25	chr20:62318890-62318914	LAMA5	HGNC:6485	ENSG00000130702	GGGAGAUGCGGGCCCGGGACCUGGG
hsa_m5C_373	chr20	62318899	62318900	-	ENST00000252999	C7052	m5C	C15	5'-GGGAGAUGCGGGCCCGGGACCUGGG-3'	............(((((...))))) ( -4.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	25	chr20:62318890-62318914	LAMA5	HGNC:6485	ENSG00000130702	GGGAGAUGCGGGCCCGGGACCUGGG
hsa_m5C_374	chr20	62311684	62311685	-	ENST00000252999	C9802	m5C	C18	5'-GGGCCCCCGAGGCUCCUCCUGGGAGG-3'	...(((((.(((.....)))))).)) ( -8.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr20:62311677-62311702	LAMA5	HGNC:6485	ENSG00000130702	GGGCCCCCGAGGCUCCUCCUGGGAGG
hsa_m5C_375	chr19	58556019	58556020	-	ENST00000253023	C851	m5C	C6	5'-GGGGCCAUGGGUAGGGGUUUGGGGGGCGGCCGGUGGGG-3'	....((((.(((................))).)))).. ( -9.00)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database	28418038	38	chr19:58555988-58556025	UBE2M	HGNC:12491	ENSG00000130725	GGGGCCAUGGGUAGGGGUUUGGGGGGCGGCCGGUGGGG
hsa_m5C_376	chr19	58545071	58545072	+	ENST00000253024	C1009	m5C	C4	5'-GGACGGCGGGGCGG-3'	...((......)). ( -0.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	14	chr19:58545069-58545082	TRIM28	HGNC:16384	ENSG00000130726	GGACGGCGGGGCGG
hsa_m5C_377	chr19	58545074	58545075	+	ENST00000253024	C1012	m5C	C7	5'-GGACGGCGGGGCGG-3'	...((......)). ( -0.80)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	14	chr19:58545069-58545082	TRIM28	HGNC:16384	ENSG00000130726	GGACGGCGGGGCGG
hsa_m5C_378	chr19	58545079	58545080	+	ENST00000253024	C1017	m5C	C12	5'-GGACGGCGGGGCGG-3'	...((......)). ( -0.80)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	14	chr19:58545069-58545082	TRIM28	HGNC:16384	ENSG00000130726	GGACGGCGGGGCGG
hsa_m5C_379	chrX	24054976	24054977	+	ENST00000253039	C22	m5C	C15	5'-GGCAACAUGGCGGGCGG-3'	.((......))...... ( -1.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	17	chrX:24054963-24054979	EIF2S3	HGNC:3267	ENSG00000130741	GGCAACAUGGCGGGCGG
hsa_m5C_380	chr19	47046626	47046627	-	ENST00000253047	C277	m5C	C22	5'-GGGCAUCGGGGUCAUCUCCUUCAUGCAGAGUGACAUGGGUCGGG-3'	..((((.((((......)))).))))....((((....)))).. (-10.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	44	chr19:47046605-47046648	TMEM160	HGNC:26042	ENSG00000130748	GGGCAUCGGGGUCAUCUCCUUCAUGCAGAGUGACAUGGGUCGGG
hsa_m5C_381	chr19	47065751	47065752	-	ENST00000253048	C4578	m5C	C16	5'-GGCACUAUGGGGGCUCCCUGG-3'	....(((.(((....)))))) ( -4.40)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	21	chr19:47065747-47065767	ZC3H4	HGNC:17808	ENSG00000130749	GGCACUAUGGGGGCUCCCUGG
hsa_m5C_382	chr19	40191572	40191573	+	ENST00000253055	C148	m5C	C10	5'-GGCCCGGGGCGG-3'	.(((...))).. ( -2.90)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	12	chr19:40191564-40191575	MAP3K10	HGNC:6849	ENSG00000130758	GGCCCGGGGCGG
hsa_m5C_383	chr19	40191718	40191719	+	ENST00000253055	C294	m5C	C3	5'-GGCGGACCCCGGCGG-3'	.((........)).. ( -1.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	15	chr19:40191717-40191731	MAP3K10	HGNC:6849	ENSG00000130758	GGCGGACCCCGGCGG
hsa_m5C_384	chr19	40191722	40191723	+	ENST00000253055	C298	m5C	C7	5'-GGCGGACCCCGGCGG-3'	.((........)).. ( -1.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	15	chr19:40191717-40191731	MAP3K10	HGNC:6849	ENSG00000130758	GGCGGACCCCGGCGG
hsa_m5C_385	chr19	40191723	40191724	+	ENST00000253055	C299	m5C	C8	5'-GGCGGACCCCGGCGG-3'	.((........)).. ( -1.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	15	chr19:40191717-40191731	MAP3K10	HGNC:6849	ENSG00000130758	GGCGGACCCCGGCGG
hsa_m5C_386	chr19	40191724	40191725	+	ENST00000253055	C300	m5C	C9	5'-GGCGGACCCCGGCGG-3'	.((........)).. ( -1.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	15	chr19:40191717-40191731	MAP3K10	HGNC:6849	ENSG00000130758	GGCGGACCCCGGCGG
hsa_m5C_387	chr19	40191725	40191726	+	ENST00000253055	C301	m5C	C10	5'-GGCGGACCCCGGCGG-3'	.((........)).. ( -1.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	15	chr19:40191717-40191731	MAP3K10	HGNC:6849	ENSG00000130758	GGCGGACCCCGGCGG
hsa_m5C_388	chr19	40191728	40191729	+	ENST00000253055	C304	m5C	C13	5'-GGCGGACCCCGGCGG-3'	.((........)).. ( -1.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	15	chr19:40191717-40191731	MAP3K10	HGNC:6849	ENSG00000130758	GGCGGACCCCGGCGG
hsa_m5C_389	chr19	40191641	40191642	+	ENST00000253055	C217	m5C	C4	5'-GGGCCGCCGGUGGAGCUGCGCGGGGUGAGCGGCGCGGGGAACGGG-3'	...(((((.(((..(((.(((...))))))..))).))...))). (-15.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	45	chr19:40191639-40191683	MAP3K10	HGNC:6849	ENSG00000130758	GGGCCGCCGGUGGAGCUGCGCGGGGUGAGCGGCGCGGGGAACGGG
hsa_m5C_390	chr19	40191642	40191643	+	ENST00000253055	C218	m5C	C5	5'-GGGCCGCCGGUGGAGCUGCGCGGGGUGAGCGGCGCGGGGAACGGG-3'	...(((((.(((..(((.(((...))))))..))).))...))). (-15.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	45	chr19:40191639-40191683	MAP3K10	HGNC:6849	ENSG00000130758	GGGCCGCCGGUGGAGCUGCGCGGGGUGAGCGGCGCGGGGAACGGG
hsa_m5C_391	chr19	40191644	40191645	+	ENST00000253055	C220	m5C	C7	5'-GGGCCGCCGGUGGAGCUGCGCGGGGUGAGCGGCGCGGGGAACGGG-3'	...(((((.(((..(((.(((...))))))..))).))...))). (-15.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	45	chr19:40191639-40191683	MAP3K10	HGNC:6849	ENSG00000130758	GGGCCGCCGGUGGAGCUGCGCGGGGUGAGCGGCGCGGGGAACGGG
hsa_m5C_392	chr19	40191645	40191646	+	ENST00000253055	C221	m5C	C8	5'-GGGCCGCCGGUGGAGCUGCGCGGGGUGAGCGGCGCGGGGAACGGG-3'	...(((((.(((..(((.(((...))))))..))).))...))). (-15.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	45	chr19:40191639-40191683	MAP3K10	HGNC:6849	ENSG00000130758	GGGCCGCCGGUGGAGCUGCGCGGGGUGAGCGGCGCGGGGAACGGG
hsa_m5C_393	chr19	40191658	40191659	+	ENST00000253055	C234	m5C	C21	5'-GGGCCGCCGGUGGAGCUGCGCGGGGUGAGCGGCGCGGGGAACGGG-3'	...(((((.(((..(((.(((...))))))..))).))...))). (-15.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	45	chr19:40191639-40191683	MAP3K10	HGNC:6849	ENSG00000130758	GGGCCGCCGGUGGAGCUGCGCGGGGUGAGCGGCGCGGGGAACGGG
hsa_m5C_394	chr19	40213629	40213630	+	ENST00000253055	C2557	m5C	C14	5'-GGGGGCGCGGGCGCCGUGG-3'	.((.((....)).)).... ( -7.30)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr19:40213617-40213635	MAP3K10	HGNC:6849	ENSG00000130758	GGGGGCGCGGGCGCCGUGG
hsa_m5C_395	chr1	28273444	28273445	+	ENST00000253063	C1168	m5C	C18	5'-GGGAUGAGGGGACGUCCCAGGAGGAGAUGG-3'	((((((......))))))............ ( -9.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr1:28273428-28273457	SESN2	HGNC:20746	ENSG00000130766	GGGAUGAGGGGACGUCCCAGGAGGAGAUGG
hsa_m5C_396	chr19	48455763	48455764	+	ENST00000253237	C4103	m5C	C8	5'-GGCACUGCGGGGGCCUGG-3'	(((.((....)))))... ( -5.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	31358969	18	chr19:48455757-48455774	GRWD1	HGNC:21270	ENSG00000105447	GGCACUGCGGGGGCCUGG
hsa_m5C_397	chr20	34876624	34876625	+	ENST00000253382	C12	m5C	C9	5'-GGCGGCCGCGGUUCUAGG-3'	.((....))......... ( -0.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	18	chr20:34876617-34876634	ACSS2	HGNC:15814	ENSG00000131069	GGCGGCCGCGGUUCUAGG
hsa_m5C_398	chr16	85654281	85654282	+	ENST00000253458	C501	m5C	C10	5'-GGCAG^GAUGCCGGCUCCAGG-3'	((((...))))......... ( -4.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr16:85648747-85648751;85654278-85654292	GSE1	HGNC:28979	ENSG00000131149	GGCAGGAUGCCGGCUCCAGG
hsa_m5C_399	chr16	85654285	85654286	+	ENST00000253458	C505	m5C	C14	5'-GGCAG^GAUGCCGGCUCCAGG-3'	((((...))))......... ( -4.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr16:85648747-85648751;85654278-85654292	GSE1	HGNC:28979	ENSG00000131149	GGCAGGAUGCCGGCUCCAGG
hsa_m5C_400	chr16	85657566	85657567	+	ENST00000253458	C1673	m5C	C5	5'-GGUGCCGGCGGAGG-3'	....((......)) ( -0.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	30526041	14	chr16:85657563-85657576	GSE1	HGNC:28979	ENSG00000131149	GGUGCCGGCGGAGG
hsa_m5C_401	chr16	85657570	85657571	+	ENST00000253458	C1677	m5C	C9	5'-GGUGCCGGCGGAGG-3'	....((......)) ( -0.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr16:85657563-85657576	GSE1	HGNC:28979	ENSG00000131149	GGUGCCGGCGGAGG
hsa_m5C_402	chr5	177403275	177403276	-	ENST00000253496	C1546	m5C	C7	5'-GGUGGCCGGCUGG-3'	(((.....))).. ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	13	chr5:177403270-177403282	F12	HGNC:3530	ENSG00000131187	GGUGGCCGGCUGG
hsa_m5C_403	chr3	15070908	15070909	-	ENST00000253699	C5842	m5C	C6	5'-GGAGGCGGAGG-3'	NA	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31061524	11	chr3:15070904-15070914	RBSN	HGNC:20759	ENSG00000131381	GGAGGCGGAGG
hsa_m5C_404	chr3	15071075	15071076	-	ENST00000253699	C5675	m5C	C8	5'-GGGAGGCCGAGACGGGUGG-3'	.....(((......))).. ( -3.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	19	chr3:15071065-15071083	RBSN	HGNC:20759	ENSG00000131381	GGGAGGCCGAGACGGGUGG
hsa_m5C_405	chr17	42844854	42844855	+	ENST00000253799	C276	m5C	C9	5'-GGCUGGGGCCAGGGCUGGUGG-3'	(((....)))........... ( -3.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	21	chr17:42844847-42844867	AOC2	HGNC:549	ENSG00000131480	GGCUGGGGCCAGGGCUGGUGG
hsa_m5C_406	chr17	42844860	42844861	+	ENST00000253799	C282	m5C	C15	5'-GGCUGGGGCCAGGGCUGGUGG-3'	(((....)))........... ( -3.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	21	chr17:42844847-42844867	AOC2	HGNC:549	ENSG00000131480	GGCUGGGGCCAGGGCUGGUGG
hsa_m5C_407	chr16	2937198	2937199	+	ENST00000253928	C2003	m5C	C10	5'-GGGAGAAGGCGGCCGGGGAGAAGG-3'	((..........)).......... ( -0.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	24	chr16:2937190-2937213	FLYWCH1	HGNC:25404	ENSG00000059122	GGGAGAAGGCGGCCGGGGAGAAGG
hsa_m5C_408	chr16	2933793	2933794	+	ENST00000253928	C1739	m5C	C10	5'-GGGAGAAGGCGGCUGGGGAGAAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	24	chr16:2933785-2933808	FLYWCH1	HGNC:25404	ENSG00000059122	GGGAGAAGGCGGCUGGGGAGAAGG
hsa_m5C_409	chr1	147157300	147157301	-	ENST00000254101	C3148	m5C	C17	5'-GGGAAUGGGUAGGAGGCACUGGG-3'	.........(((......))).. ( -0.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	23	chr1:147157295-147157317	PRKAB2	HGNC:9379	ENSG00000131791	GGGAAUGGGUAGGAGGCACUGGG
hsa_m5C_410	chr16	31180156	31180157	+	ENST00000254108	C19	m5C	C6	5'-GGCGUCGGUACUCAGCGGUGUUGG-3'	(((((((........))))))).. ( -3.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HCT116;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	24	chr16:31180152-31180175	FUS	HGNC:4010	ENSG00000089280	GGCGUCGGUACUCAGCGGUGUUGG
hsa_m5C_411	chr16	31180161	31180162	+	ENST00000254108	C24	m5C	C11	5'-GGCGUCGGUACUCAGCGGUGUUGG-3'	(((((((........))))))).. ( -3.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	24	chr16:31180152-31180175	FUS	HGNC:4010	ENSG00000089280	GGCGUCGGUACUCAGCGGUGUUGG
hsa_m5C_412	chr14	58200234	58200235	+	ENST00000254286	C87	m5C	C3	5'-GGCCUGGGGAGCGGCGGGG-3'	..((((........)))). ( -4.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	19	chr14:58200233-58200251	ACTR10	HGNC:17372	ENSG00000131966	GGCCUGGGGAGCGGCGGGG
hsa_m5C_413	chr14	58200235	58200236	+	ENST00000254286	C88	m5C	C4	5'-GGCCUGGGGAGCGGCGGGG-3'	..((((........)))). ( -4.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	19	chr14:58200233-58200251	ACTR10	HGNC:17372	ENSG00000131966	GGCCUGGGGAGCGGCGGGG
hsa_m5C_414	chr19	13973042	13973043	-	ENST00000254325	C1284	m5C	C16	5'-GGCCGCAGGCACGGCCACCCAGG-3'	(((((......)))))....... ( -9.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	23	chr19:13973036-13973058	RFX1	HGNC:9982	ENSG00000132005	GGCCGCAGGCACGGCCACCCAGG
hsa_m5C_415	chr19	13962800	13962801	-	ENST00000254325	C3104	m5C	C6	5'-GGCGGCUGGCGG-3'	.((.....)).. ( -1.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	12	chr19:13962795-13962806	RFX1	HGNC:9982	ENSG00000132005	GGCGGCUGGCGG
hsa_m5C_416	chr19	13962796	13962797	-	ENST00000254325	C3108	m5C	C10	5'-GGCGGCUGGCGG-3'	.((.....)).. ( -1.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	12	chr19:13962795-13962806	RFX1	HGNC:9982	ENSG00000132005	GGCGGCUGGCGG
hsa_m5C_417	chr11	6570641	6570642	+	ENST00000254579	C13710	m5C	C18	5'-GGAGCUGGAUGCAAUGGCAGAGUGCAAGG-3'	...((....(((....)))....)).... ( -4.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	29	chr11:6570625-6570653	DNHD1	HGNC:26532	ENSG00000179532	GGAGCUGGAUGCAAUGGCAGAGUGCAAGG
hsa_m5C_418	chr11	6546057	6546058	+	ENST00000254579	C5699	m5C	C20	5'-GGCACAGGCCCUGGGCCGCCAGCUGG-3'	(((...((((...)))))))...... ( -9.80)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	26	chr11:6546039-6546064	DNHD1	HGNC:26532	ENSG00000179532	GGCACAGGCCCUGGGCCGCCAGCUGG
hsa_m5C_419	chr11	6600199	6600200	-	ENST00000254605	C1431	m5C	C20	5'-GGCCCCCUCUGGUAGGGCCCAAGG-3'	(((((((...))..)))))..... ( -9.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr11:6600196-6600219	RRP8	HGNC:29030	ENSG00000132275	GGCCCCCUCUGGUAGGGCCCAAGG
hsa_m5C_420	chr10	127907223	127907224	+	ENST00000254667	C122	m5C	C4	5'-GGGCGCCCCGGAGGGCGGCGGG-3'	...((((((....)).)))).. (-10.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	22	chr10:127907221-127907242	PTPRE	HGNC:9669	ENSG00000132334	GGGCGCCCCGGAGGGCGGCGGG
hsa_m5C_421	chr17	4554905	4554906	-	ENST00000254718	C309	m5C	C12	5'-GGACUCGGGGUCGG-3'	.((((...)))).. ( -2.40)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	14	chr17:4554904-4554917	MYBBP1A	HGNC:7546	ENSG00000132382	GGACUCGGGGUCGG
hsa_m5C_422	chr4	70839601	70839602	-	ENST00000254799	C289	m5C	C7	5'-GGGAGGCUGGCGGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	14	chr4:70839595-70839608	GRSF1	HGNC:4610	ENSG00000132463	GGGAGGCUGGCGGG
hsa_m5C_423	chr16	69342492	69342493	+	ENST00000254940	C1442	m5C	C7	5'-GGGAGGCUGAGGCAGG-3'	.....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr16:69342487-69342502	NIP7	HGNC:24328	ENSG00000132603	GGGAGGCUGAGGCAGG
hsa_m5C_424	chr16	69342498	69342499	+	ENST00000254940	C1448	m5C	C13	5'-GGGAGGCUGAGGCAGG-3'	.....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr16:69342487-69342502	NIP7	HGNC:24328	ENSG00000132603	GGGAGGCUGAGGCAGG
hsa_m5C_425	chr16	69318872	69318873	+	ENST00000254950	C556	m5C	C8	5'-GGCCGGGCUGGAGGG-3'	..((........)). ( -1.50)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	15	chr16:69318866-69318880	VPS4A	HGNC:13488	ENSG00000132612	GGCCGGGCUGGAGGG
hsa_m5C_426	chr20	10643829	10643830	-	ENST00000254958	C2875	m5C	C13	5'-GGAUGGAGACAACUGGUACCGG-3'	....((..((.....)).)).. ( -0.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr20:10643821-10643842	JAG1	HGNC:6188	ENSG00000101384	GGAUGGAGACAACUGGUACCGG
hsa_m5C_427	chr11	68940022	68940023	+	ENST00000255078	C3336	m5C	C6	5'-GGAUCCUGGGGAAGG-3'	....(((.....))) ( -1.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr11:68940018-68940032	IGHMBP2	HGNC:5542	ENSG00000132740	GGAUCCUGGGGAAGG
hsa_m5C_428	chr17	10697522	10697523	-	ENST00000255390	C11	m5C	C7	5'-GGAGACCCGGUCUCCGAGGCUCAUGG-3'	((((((...))))))........... ( -8.70)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	26	chr17:10697504-10697529	SCO1	HGNC:10603	ENSG00000133028	GGAGACCCGGUCUCCGAGGCUCAUGG
hsa_m5C_429	chr17	10697521	10697522	-	ENST00000255390	C12	m5C	C8	5'-GGAGACCCGGUCUCCGAGGCUCAUGG-3'	((((((...))))))........... ( -8.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr17:10697504-10697529	SCO1	HGNC:10603	ENSG00000133028	GGAGACCCGGUCUCCGAGGCUCAUGG
hsa_m5C_430	chr19	1985704	1985705	-	ENST00000255608	C2372	m5C	C3	5'-GGCCCCAGCCGGCCCCGACCGGGUCCAGG-3'	(((....)))(((((.....))))).... (-10.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	29	chr19:1985679-1985707	BTBD2	HGNC:15504	ENSG00000133243	GGCCCCAGCCGGCCCCGACCGGGUCCAGG
hsa_m5C_431	chr19	1985703	1985704	-	ENST00000255608	C2373	m5C	C4	5'-GGCCCCAGCCGGCCCCGACCGGGUCCAGG-3'	(((....)))(((((.....))))).... (-10.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	29	chr19:1985679-1985707	BTBD2	HGNC:15504	ENSG00000133243	GGCCCCAGCCGGCCCCGACCGGGUCCAGG
hsa_m5C_432	chr19	1985694	1985695	-	ENST00000255608	C2382	m5C	C13	5'-GGCCCCAGCCGGCCCCGACCGGGUCCAGG-3'	(((....)))(((((.....))))).... (-10.90)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	29	chr19:1985679-1985707	BTBD2	HGNC:15504	ENSG00000133243	GGCCCCAGCCGGCCCCGACCGGGUCCAGG
hsa_m5C_433	chr19	1985693	1985694	-	ENST00000255608	C2383	m5C	C14	5'-GGCCCCAGCCGGCCCCGACCGGGUCCAGG-3'	(((....)))(((((.....))))).... (-10.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	29	chr19:1985679-1985707	BTBD2	HGNC:15504	ENSG00000133243	GGCCCCAGCCGGCCCCGACCGGGUCCAGG
hsa_m5C_434	chr19	1985692	1985693	-	ENST00000255608	C2384	m5C	C15	5'-GGCCCCAGCCGGCCCCGACCGGGUCCAGG-3'	(((....)))(((((.....))))).... (-10.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	29	chr19:1985679-1985707	BTBD2	HGNC:15504	ENSG00000133243	GGCCCCAGCCGGCCCCGACCGGGUCCAGG
hsa_m5C_435	chr19	1985691	1985692	-	ENST00000255608	C2385	m5C	C16	5'-GGCCCCAGCCGGCCCCGACCGGGUCCAGG-3'	(((....)))(((((.....))))).... (-10.90)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	29	chr19:1985679-1985707	BTBD2	HGNC:15504	ENSG00000133243	GGCCCCAGCCGGCCCCGACCGGGUCCAGG
hsa_m5C_436	chr19	2015457	2015458	-	ENST00000255608	C257	m5C	C31	5'-GGGCGCGGAGCGGGCGGAGGAGGCGGCGGGCCCGGGGG-3'	((((.((..((...........))..)).))))..... (-15.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	38	chr19:2015451-2015488	BTBD2	HGNC:15504	ENSG00000133243	GGGCGCGGAGCGGGCGGAGGAGGCGGCGGGCCCGGGGG
hsa_m5C_437	chr19	2015456	2015457	-	ENST00000255608	C258	m5C	C32	5'-GGGCGCGGAGCGGGCGGAGGAGGCGGCGGGCCCGGGGG-3'	((((.((..((...........))..)).))))..... (-15.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	38	chr19:2015451-2015488	BTBD2	HGNC:15504	ENSG00000133243	GGGCGCGGAGCGGGCGGAGGAGGCGGCGGGCCCGGGGG
hsa_m5C_438	chr19	2015455	2015456	-	ENST00000255608	C259	m5C	C33	5'-GGGCGCGGAGCGGGCGGAGGAGGCGGCGGGCCCGGGGG-3'	((((.((..((...........))..)).))))..... (-15.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	38	chr19:2015451-2015488	BTBD2	HGNC:15504	ENSG00000133243	GGGCGCGGAGCGGGCGGAGGAGGCGGCGGGCCCGGGGG
hsa_m5C_439	chr19	1941397	1941398	+	ENST00000255641	C227	m5C	C3	5'-GGCCCGGCCACGGCGG-3'	.((.((....)))).. ( -3.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	16	chr19:1941396-1941411	CSNK1G2	HGNC:2455	ENSG00000133275	GGCCCGGCCACGGCGG
hsa_m5C_440	chr19	1941398	1941399	+	ENST00000255641	C228	m5C	C4	5'-GGCCCGGCCACGGCGG-3'	.((.((....)))).. ( -3.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	16	chr19:1941396-1941411	CSNK1G2	HGNC:2455	ENSG00000133275	GGCCCGGCCACGGCGG
hsa_m5C_441	chr19	1941399	1941400	+	ENST00000255641	C229	m5C	C5	5'-GGCCCGGCCACGGCGG-3'	.((.((....)))).. ( -3.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	16	chr19:1941396-1941411	CSNK1G2	HGNC:2455	ENSG00000133275	GGCCCGGCCACGGCGG
hsa_m5C_442	chr19	1941402	1941403	+	ENST00000255641	C232	m5C	C8	5'-GGCCCGGCCACGGCGG-3'	.((.((....)))).. ( -3.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	16	chr19:1941396-1941411	CSNK1G2	HGNC:2455	ENSG00000133275	GGCCCGGCCACGGCGG
hsa_m5C_443	chr19	1941403	1941404	+	ENST00000255641	C233	m5C	C9	5'-GGCCCGGCCACGGCGG-3'	.((.((....)))).. ( -3.80)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	16	chr19:1941396-1941411	CSNK1G2	HGNC:2455	ENSG00000133275	GGCCCGGCCACGGCGG
hsa_m5C_444	chr19	1980354	1980355	+	ENST00000255641	C1912	m5C	C9	5'-GGCUCAGGCGGCCCCACCCCCGGGACGUGG-3'	((((.....))))((((((...))..)))) ( -7.00)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	30	chr19:1980347-1980376	CSNK1G2	HGNC:2455	ENSG00000133275	GGCUCAGGCGGCCCCACCCCCGGGACGUGG
hsa_m5C_445	chr19	1980357	1980358	+	ENST00000255641	C1915	m5C	C12	5'-GGCUCAGGCGGCCCCACCCCCGGGACGUGG-3'	((((.....))))((((((...))..)))) ( -7.00)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	30	chr19:1980347-1980376	CSNK1G2	HGNC:2455	ENSG00000133275	GGCUCAGGCGGCCCCACCCCCGGGACGUGG
hsa_m5C_446	chr19	1980358	1980359	+	ENST00000255641	C1916	m5C	C13	5'-GGCUCAGGCGGCCCCACCCCCGGGACGUGG-3'	((((.....))))((((((...))..)))) ( -7.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	30	chr19:1980347-1980376	CSNK1G2	HGNC:2455	ENSG00000133275	GGCUCAGGCGGCCCCACCCCCGGGACGUGG
hsa_m5C_447	chr19	1980359	1980360	+	ENST00000255641	C1917	m5C	C14	5'-GGCUCAGGCGGCCCCACCCCCGGGACGUGG-3'	((((.....))))((((((...))..)))) ( -7.00)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	30	chr19:1980347-1980376	CSNK1G2	HGNC:2455	ENSG00000133275	GGCUCAGGCGGCCCCACCCCCGGGACGUGG
hsa_m5C_448	chr19	1980360	1980361	+	ENST00000255641	C1918	m5C	C15	5'-GGCUCAGGCGGCCCCACCCCCGGGACGUGG-3'	((((.....))))((((((...))..)))) ( -7.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	30	chr19:1980347-1980376	CSNK1G2	HGNC:2455	ENSG00000133275	GGCUCAGGCGGCCCCACCCCCGGGACGUGG
hsa_m5C_449	chr19	1981117	1981118	+	ENST00000255641	C2675	m5C	C5	5'-GGGGCCUGGGGGCGGCCCUGGACUGGCGGGCGGUUCCCCAGUGGG-3'	.....((((((((.((((.........)))).)).)))))).... (-21.70)	loop	mRNA	heart,T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	45	chr19:1981114-1981158	CSNK1G2	HGNC:2455	ENSG00000133275	GGGGCCUGGGGGCGGCCCUGGACUGGCGGGCGGUUCCCCAGUGGG
hsa_m5C_450	chr19	1981118	1981119	+	ENST00000255641	C2676	m5C	C6	5'-GGGGCCUGGGGGCGGCCCUGGACUGGCGGGCGGUUCCCCAGUGGG-3'	.....((((((((.((((.........)))).)).)))))).... (-21.70)	loop	mRNA	heart,T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	45	chr19:1981114-1981158	CSNK1G2	HGNC:2455	ENSG00000133275	GGGGCCUGGGGGCGGCCCUGGACUGGCGGGCGGUUCCCCAGUGGG
hsa_m5C_451	chr19	1981125	1981126	+	ENST00000255641	C2683	m5C	C13	5'-GGGGCCUGGGGGCGGCCCUGGACUGGCGGGCGGUUCCCCAGUGGG-3'	.....((((((((.((((.........)))).)).)))))).... (-21.70)	loop	mRNA	HeLa,rip antibody: ALYREF;heart,T24;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	45	chr19:1981114-1981158	CSNK1G2	HGNC:2455	ENSG00000133275	GGGGCCUGGGGGCGGCCCUGGACUGGCGGGCGGUUCCCCAGUGGG
hsa_m5C_452	chr5	6378500	6378501	-	ENST00000255764	C47	m5C	C5	5'-GGGUCGGGGACGGGCCGAGG-3'	((.(((....))).)).... ( -7.20)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	20	chr5:6378486-6378505	MED10	HGNC:28760	ENSG00000133398	GGGUCGGGGACGGGCCGAGG
hsa_m5C_453	chr22	20858761	20858762	-	ENST00000255882	C50	m5C	C21	5'-GGGCGCUCGCGGGCCAGGAGCGGGGAGCCGGCGGG-3'	.(((.(((((.........)))))..)))...... (-12.40)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	35	chr22:20858748-20858782	PI4KA	HGNC:8983	ENSG00000241973	GGGCGCUCGCGGGCCAGGAGCGGGGAGCCGGCGGG
hsa_m5C_454	chr8	30082929	30082930	-	ENST00000256255	C135	m5C	C4	5'-GGCCGGGAGCGGCCGGG-3'	(((((....)))))... (-10.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr8:30082917-30082933	SARAF	HGNC:28789	ENSG00000133872	GGCCGGGAGCGGCCGGG
hsa_m5C_455	chr14	70584532	70584533	-	ENST00000256379	C1039	m5C	C3	5'-GGCGUGGUGGCGG-3'	.((......)).. ( -2.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	13	chr14:70584523-70584535	MED6	HGNC:19970	ENSG00000133997	GGCGUGGUGGCGG
hsa_m5C_456	chr14	70584524	70584525	-	ENST00000256379	C1047	m5C	C11	5'-GGCGUGGUGGCGG-3'	.((......)).. ( -2.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	13	chr14:70584523-70584535	MED6	HGNC:19970	ENSG00000133997	GGCGUGGUGGCGG
hsa_m5C_457	chr18	54224292	54224293	-	ENST00000256429	C377	m5C	C17	5'-GGGGACGGGGACGGGGCCGGGG-3'	((...((....))...)).... ( -4.30)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	22	chr18:54224288-54224309	MBD2	HGNC:6917	ENSG00000134046	GGGGACGGGGACGGGGCCGGGG
hsa_m5C_458	chr18	54224160	54224161	-	ENST00000256429	C509	m5C	C7	5'-GGGGAGCGCGGGGCCGGGGCCCAGGGG-3'	..........((((....))))..... ( -6.80)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;RNAfold:(High)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	27	chr18:54224141-54224167	MBD2	HGNC:6917	ENSG00000134046	GGGGAGCGCGGGGCCGGGGCCCAGGGG
hsa_m5C_459	chr18	54224158	54224159	-	ENST00000256429	C511	m5C	C9	5'-GGGGAGCGCGGGGCCGGGGCCCAGGGG-3'	..........((((....))))..... ( -6.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	27	chr18:54224141-54224167	MBD2	HGNC:6917	ENSG00000134046	GGGGAGCGCGGGGCCGGGGCCCAGGGG
hsa_m5C_460	chr18	54224153	54224154	-	ENST00000256429	C516	m5C	C14	5'-GGGGAGCGCGGGGCCGGGGCCCAGGGG-3'	..........((((....))))..... ( -6.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	27	chr18:54224141-54224167	MBD2	HGNC:6917	ENSG00000134046	GGGGAGCGCGGGGCCGGGGCCCAGGGG
hsa_m5C_461	chr18	54224152	54224153	-	ENST00000256429	C517	m5C	C15	5'-GGGGAGCGCGGGGCCGGGGCCCAGGGG-3'	..........((((....))))..... ( -6.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	27	chr18:54224141-54224167	MBD2	HGNC:6917	ENSG00000134046	GGGGAGCGCGGGGCCGGGGCCCAGGGG
hsa_m5C_462	chr3	5122360	5122361	+	ENST00000256496	C70	m5C	C4	5'-GGGCACCAAGGAGCCGUUGGAGGGUCCGG-3'	.........(((.((......)).))).. ( -8.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr3:5122358-5122386	ARL8B	HGNC:25564	ENSG00000134108	GGGCACCAAGGAGCCGUUGGAGGGUCCGG
hsa_m5C_463	chr18	23135772	23135773	+	ENST00000256925	C289	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	11	chr18:23135765-23135775	CABLES1	HGNC:25097	ENSG00000134508	GGCGGCGGCGG
hsa_m5C_464	chr18	31476857	31476858	+	ENST00000257189	C3735	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr18:31476853-31476867	DSG3	HGNC:3050	ENSG00000134757	GGAGGCUGAGGCAGG
hsa_m5C_465	chr11	61743602	61743603	+	ENST00000257215	C2401	m5C	C9	5'-GGUUGCGGCGGCGG-3'	...(((....))). ( -2.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr11:61743595-61743608	DAGLA	HGNC:1165	ENSG00000134780	GGUUGCGGCGGCGG
hsa_m5C_466	chr5	160251985	160251986	-	ENST00000257536	C2806	m5C	C13	5'-GGCAGGGGCCGCCAGG-3'	(((....)))...... ( -4.20)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr5:160251983-160251998	CCNJL	HGNC:25876	ENSG00000135083	GGCAGGGGCCGCCAGG
hsa_m5C_467	chr12	120347454	120347455	-	ENST00000257552	C923	m5C	C17	5'-GGCAGCGGCUGUGGUUCGAGG-3'	.((((...))))......... ( -1.60)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	21	chr12:120347451-120347471	MSI1	HGNC:7330	ENSG00000135097	GGCAGCGGCUGUGGUUCGAGG
hsa_m5C_468	chr12	112152759	112152760	+	ENST00000257604	C2335	m5C	C6	5'-GGGAGCUGGGGAUGCAGAAGAGGAAGAGG-3'	.....(((......)))............ ( -2.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	29	chr12:112152755-112152783	TRAFD1	HGNC:24808	ENSG00000135148	GGGAGCUGGGGAUGCAGAAGAGGAAGAGG
hsa_m5C_469	chr12	112152768	112152769	+	ENST00000257604	C2344	m5C	C15	5'-GGGAGCUGGGGAUGCAGAAGAGGAAGAGG-3'	.....(((......)))............ ( -2.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	29	chr12:112152755-112152783	TRAFD1	HGNC:24808	ENSG00000135148	GGGAGCUGGGGAUGCAGAAGAGGAAGAGG
hsa_m5C_470	chr12	53269366	53269367	+	ENST00000257934	C516	m5C	C12	5'-GGACUAUGAGGCCGUGGCUCGGG-3'	.(((((((....))))).))... ( -4.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	23	chr12:53269356-53269378	ESPL1	HGNC:16856	ENSG00000135476	GGACUAUGAGGCCGUGGCUCGGG
hsa_m5C_471	chr12	56122357	56122358	+	ENST00000257940	C1965	m5C	C11	5'-GGAAUUGCUUCUGGGCCCUGGGAAAGCUGG-3'	......((((((........)).))))... ( -3.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	30	chr12:56122348-56122377	ZC3H10	HGNC:25893	ENSG00000135482	GGAAUUGCUUCUGGGCCCUGGGAAAGCUGG
hsa_m5C_472	chr12	68808196	68808197	+	ENST00000258149	C21	m5C	C8	5'-GGCACCGCGGCGAGCUUGGCUGCUUCUGGG-3'	....(((.(((.(((...))))))..))). ( -8.30)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	30	chr12:68808190-68808219	MDM2	HGNC:6973	ENSG00000135679	GGCACCGCGGCGAGCUUGGCUGCUUCUGGG
hsa_m5C_473	chr1	183117337	183117338	+	ENST00000258341	C1880	m5C	C15	5'-GGAUGGGUGGCGUGCGG-3'	NA	loop	mRNA	HeLa,siControl;Testis,HeLa;HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;38168991;m6A-Atlas database;RMVar database	30872485;28418038;31061524;38168991	17	chr1:183117324-183117340	LAMC1	HGNC:6492	ENSG00000135862	GGAUGGGUGGCGUGCGG
hsa_m5C_474	chr2	218568193	218568194	-	ENST00000258399	C158	m5C	C17	5'-GGUCUGUCCGGGGGCUCCGGACCCUCGG-3'	.......(((((((.......))))))) (-11.10)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr2:218568183-218568210	USP37	HGNC:20063	ENSG00000135913	GGUCUGUCCGGGGGCUCCGGACCCUCGG
hsa_m5C_475	chr2	102717285	102717286	-	ENST00000258436	C2637	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr2:102717277-102717291	MFSD9	HGNC:28158	ENSG00000135953	GGAGGCUGAGGCAGG
hsa_m5C_476	chr2	102718544	102718545	-	ENST00000258436	C1378	m5C	C10	5'-GGGGUUGCCCAGGAGG-3'	(((....)))...... ( -4.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr2:102718539-102718554	MFSD9	HGNC:28158	ENSG00000135953	GGGGUUGCCCAGGAGG
hsa_m5C_477	chr12	94148853	94148854	+	ENST00000258526	C278	m5C	C25	5'-GGGCGAGCUGCGGGGAUGGGGCGGCCGCGG-3'	..(((.(((((.........)))))))).. (-13.20)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	30	chr12:94148830-94148859	PLXNC1	HGNC:9106	ENSG00000136040	GGGCGAGCUGCGGGGAUGGGGCGGCCGCGG
hsa_m5C_478	chr12	101877737	101877738	+	ENST00000258534	C159	m5C	C18	5'-GGCAGCCCGGAGCAACCCGGCGCCCGG-3'	(((.(((.((.....)).))))))... (-11.00)	loop	mRNA	Testis;HeLa	UBS-seq:(High);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	31061524;38168991	27	chr12:101877721-101877747	DRAM1	HGNC:25645	ENSG00000136048	GGCAGCCCGGAGCAACCCGGCGCCCGG
hsa_m5C_479	chr13	48081646	48081647	-	ENST00000258648	C532	m5C	C6	5'-GGUUCCAG^GGGACCCCCGG-3'	(((((....)))))..... ( -4.50)	loop	mRNA	293T;HeLa,siControl;T24;lung,Testis,HeLa,T24;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	31358969;28418038;31061524;38168991	19	chr13:48079965-48079975;48081645-48081652	MED4	HGNC:17903	ENSG00000136146	GGUUCCAGGGGACCCCCGG
hsa_m5C_480	chr17	58007109	58007110	-	ENST00000258962	C137	m5C	C23	5'-GGGAGGUGGUGUGAUUCGUGGCCCCGCAGG-3'	.((.(((.(((.....))).)))))..... ( -6.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr17:58007103-58007132	SRSF1	HGNC:10780	ENSG00000136450	GGGAGGUGGUGUGAUUCGUGGCCCCGCAGG
hsa_m5C_481	chr17	58007108	58007109	-	ENST00000258962	C138	m5C	C24	5'-GGGAGGUGGUGUGAUUCGUGGCCCCGCAGG-3'	.((.(((.(((.....))).)))))..... ( -6.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr17:58007103-58007132	SRSF1	HGNC:10780	ENSG00000136450	GGGAGGUGGUGUGAUUCGUGGCCCCGCAGG
hsa_m5C_482	chr17	58007107	58007108	-	ENST00000258962	C139	m5C	C25	5'-GGGAGGUGGUGUGAUUCGUGGCCCCGCAGG-3'	.((.(((.(((.....))).)))))..... ( -6.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr17:58007103-58007132	SRSF1	HGNC:10780	ENSG00000136450	GGGAGGUGGUGUGAUUCGUGGCCCCGCAGG
hsa_m5C_483	chr2	128193075	128193076	+	ENST00000259253	C8160	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr2:128193071-128193085	UGGT1	HGNC:15663	ENSG00000136731	GGAGGCUGAGGCAGG
hsa_m5C_484	chr2	128193081	128193082	+	ENST00000259253	C8166	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr2:128193071-128193085	UGGT1	HGNC:15663	ENSG00000136731	GGAGGCUGAGGCAGG
hsa_m5C_485	chr2	128194320	128194321	+	ENST00000259253	C9405	m5C	C16	5'-GGCUGGAGUGGAGUGCAGUGG-3'	.((((..........)))).. ( -2.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	21	chr2:128194306-128194326	UGGT1	HGNC:15663	ENSG00000136731	GGCUGGAGUGGAGUGCAGUGG
hsa_m5C_486	chr2	128192942	128192943	+	ENST00000259253	C8027	m5C	C7	5'-GGGAAGCCGAGGCGGGCGGAUUAUG-3'	.....(((......)))........ ( -5.10)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr2:128192937-128192961	UGGT1	HGNC:15663	ENSG00000136731	GGGAAGCCGAGGCGGGCGGAUUAUG
hsa_m5C_487	chr2	128192943	128192944	+	ENST00000259253	C8028	m5C	C8	5'-GGGAAGCCGAGGCGGGCGGAUUAUG-3'	.....(((......)))........ ( -5.10)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr2:128192937-128192961	UGGT1	HGNC:15663	ENSG00000136731	GGGAAGCCGAGGCGGGCGGAUUAUG
hsa_m5C_488	chr2	128192952	128192953	+	ENST00000259253	C8037	m5C	C17	5'-GGGAAGCCGAGGCGGGCGGAUUAUG-3'	.....(((......)))........ ( -5.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr2:128192937-128192961	UGGT1	HGNC:15663	ENSG00000136731	GGGAAGCCGAGGCGGGCGGAUUAUG
hsa_m5C_489	chr2	128189904	128189905	+	ENST00000259253	C4989	m5C	C7	5'-GGUGGCCACUGGAUCUUUGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr2:128189899-128189918	UGGT1	HGNC:15663	ENSG00000136731	GGUGGCCACUGGAUCUUUGG
hsa_m5C_490	chr2	128189906	128189907	+	ENST00000259253	C4991	m5C	C9	5'-GGUGGCCACUGGAUCUUUGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr2:128189899-128189918	UGGT1	HGNC:15663	ENSG00000136731	GGUGGCCACUGGAUCUUUGG
hsa_m5C_491	chr9	111408587	111408588	-	ENST00000259335	C3169	m5C	C4	5'-GGUCUGAUGGAUUCUGUGGAG^G-3'	.((((...)))).......... ( -0.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	22	chr9:111397153-111397153;111408571-111408591	ECPAS	HGNC:29020	ENSG00000136813	GGUCUGAUGGAUUCUGUGGAGG
hsa_m5C_492	chr8	123042160	123042161	-	ENST00000259512	C142	m5C	C20	5'-GGGGGUCGGCACGGGGAGUCGGG-3'	.....(((((.......))))). ( -3.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	23	chr8:123042158-123042180	DERL1	HGNC:28454	ENSG00000136986	GGGGGUCGGCACGGGGAGUCGGG
hsa_m5C_493	chr9	35813079	35813080	-	ENST00000259667	C529	m5C	C6	5'-GGGGCCGGCAGCUCCAGUGG-3'	(((((.....)))))..... ( -7.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr9:35813066-35813085	HINT2	HGNC:18344	ENSG00000137133	GGGGCCGGCAGCUCCAGUGG
hsa_m5C_494	chr9	35813073	35813074	-	ENST00000259667	C535	m5C	C12	5'-GGGGCCGGCAGCUCCAGUGG-3'	(((((.....)))))..... ( -7.30)	loop	mRNA	HeLa,With in vitro transcribed m5C spike-ins;liver;293T;HeLa,siControl;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	28418038;31061524;38168991	20	chr9:35813066-35813085	HINT2	HGNC:18344	ENSG00000137133	GGGGCCGGCAGCUCCAGUGG
hsa_m5C_495	chr6	28281646	28281647	+	ENST00000259883	C76	m5C	C8	5'-GGGGAAACCGGCGCUCCCGACAGGGGAGCACCGGG-3'	.......((((.((((((.....)))))).)))). (-22.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	35	chr6:28281640-28281674	PGBD1	HGNC:19398	ENSG00000137338	GGGGAAACCGGCGCUCCCGACAGGGGAGCACCGGG
hsa_m5C_496	chr6	28281652	28281653	+	ENST00000259883	C82	m5C	C14	5'-GGGGAAACCGGCGCUCCCGACAGGGGAGCACCGGG-3'	.......((((.((((((.....)))))).)))). (-22.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	35	chr6:28281640-28281674	PGBD1	HGNC:19398	ENSG00000137338	GGGGAAACCGGCGCUCCCGACAGGGGAGCACCGGG
hsa_m5C_497	chr6	28281655	28281656	+	ENST00000259883	C85	m5C	C17	5'-GGGGAAACCGGCGCUCCCGACAGGGGAGCACCGGG-3'	.......((((.((((((.....)))))).)))). (-22.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	35	chr6:28281640-28281674	PGBD1	HGNC:19398	ENSG00000137338	GGGGAAACCGGCGCUCCCGACAGGGGAGCACCGGG
hsa_m5C_498	chr11	76380933	76380934	-	ENST00000260045	C199	m5C	C3	5'-GGCCGGCCGGCCUGG-3'	((((....))))... ( -7.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr11:76380922-76380936	THAP12	HGNC:9440	ENSG00000137492	GGCCGGCCGGCCUGG
hsa_m5C_499	chr11	76380932	76380933	-	ENST00000260045	C200	m5C	C4	5'-GGCCGGCCGGCCUGG-3'	((((....))))... ( -7.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr11:76380922-76380936	THAP12	HGNC:9440	ENSG00000137492	GGCCGGCCGGCCUGG
hsa_m5C_500	chr11	76380929	76380930	-	ENST00000260045	C203	m5C	C7	5'-GGCCGGCCGGCCUGG-3'	((((....))))... ( -7.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr11:76380922-76380936	THAP12	HGNC:9440	ENSG00000137492	GGCCGGCCGGCCUGG
hsa_m5C_501	chr11	76380928	76380929	-	ENST00000260045	C204	m5C	C8	5'-GGCCGGCCGGCCUGG-3'	((((....))))... ( -7.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr11:76380922-76380936	THAP12	HGNC:9440	ENSG00000137492	GGCCGGCCGGCCUGG
hsa_m5C_502	chr11	76380925	76380926	-	ENST00000260045	C207	m5C	C11	5'-GGCCGGCCGGCCUGG-3'	((((....))))... ( -7.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr11:76380922-76380936	THAP12	HGNC:9440	ENSG00000137492	GGCCGGCCGGCCUGG
hsa_m5C_503	chr11	76380924	76380925	-	ENST00000260045	C208	m5C	C12	5'-GGCCGGCCGGCCUGG-3'	((((....))))... ( -7.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr11:76380922-76380936	THAP12	HGNC:9440	ENSG00000137492	GGCCGGCCGGCCUGG
hsa_m5C_504	chr8	63085922	63085923	-	ENST00000260116	C131	m5C	C21	5'-GGCCUGGCGGCGCUGCGGCGCCGGG-3'	..(((((((.((...)).))))))) (-15.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr8:63085919-63085943	TTPA	HGNC:12404	ENSG00000137561	GGCCUGGCGGCGCUGCGGCGCCGGG
hsa_m5C_505	chr8	63085921	63085922	-	ENST00000260116	C132	m5C	C22	5'-GGCCUGGCGGCGCUGCGGCGCCGGG-3'	..(((((((.((...)).))))))) (-15.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr8:63085919-63085943	TTPA	HGNC:12404	ENSG00000137561	GGCCUGGCGGCGCUGCGGCGCCGGG
hsa_m5C_506	chr11	121452466	121452467	+	ENST00000260197	C154	m5C	C5	5'-GGACCGGGGCUUCCUCGUGG-3'	....(((((...)))))... ( -4.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr11:121452463-121452482	SORL1	HGNC:11185	ENSG00000137642	GGACCGGGGCUUCCUCGUGG
hsa_m5C_507	chr15	41502967	41502968	+	ENST00000260386	C1242	m5C	C17	5'-GGAGGCACGAG^GUGAUCGG-3'	.......(((.....))). ( -1.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr15:41502849-41502859;41502963-41502970	ITPKA	HGNC:6178	ENSG00000137825	GGAGGCACGAGGUGAUCGG
hsa_m5C_508	chr15	41494087	41494088	+	ENST00000260386	C215	m5C	C9	5'-GGGGGAGCCCCGGGCCCGCGGGGCCAAGCGGCGUGGG-3'	((((...))))...((((((..((...))..)))))) (-16.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	37	chr15:41494080-41494116	ITPKA	HGNC:6178	ENSG00000137825	GGGGGAGCCCCGGGCCCGCGGGGCCAAGCGGCGUGGG
hsa_m5C_509	chr2	27134424	27134425	-	ENST00000260643	C212	m5C	C4	5'-GGGCGGGAUGGGCCGGCGCCGGG-3'	((((.((.....)).)).))... ( -8.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	23	chr2:27134406-27134428	PREB	HGNC:9356	ENSG00000138073	GGGCGGGAUGGGCCGGCGCCGGG
hsa_m5C_510	chr2	43995860	43995861	-	ENST00000260665	C129	m5C	C3	5'-GGCGGCCCGGGCCGG-3'	..((((....)))). ( -5.90)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	15	chr2:43995849-43995863	LRPPRC	HGNC:15714	ENSG00000138095	GGCGGCCCGGGCCGG
hsa_m5C_511	chr2	43995856	43995857	-	ENST00000260665	C133	m5C	C7	5'-GGCGGCCCGGGCCGG-3'	..((((....)))). ( -5.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	15	chr2:43995849-43995863	LRPPRC	HGNC:15714	ENSG00000138095	GGCGGCCCGGGCCGG
hsa_m5C_512	chr2	43995855	43995856	-	ENST00000260665	C134	m5C	C8	5'-GGCGGCCCGGGCCGG-3'	..((((....)))). ( -5.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr2:43995849-43995863	LRPPRC	HGNC:15714	ENSG00000138095	GGCGGCCCGGGCCGG
hsa_m5C_513	chr2	43995851	43995852	-	ENST00000260665	C138	m5C	C12	5'-GGCGGCCCGGGCCGG-3'	..((((....)))). ( -5.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr2:43995849-43995863	LRPPRC	HGNC:15714	ENSG00000138095	GGCGGCCCGGGCCGG
hsa_m5C_514	chr10	92653953	92653954	+	ENST00000260731	C3575	m5C	C13	5'-GGGAGGCUGAGGCGGG-3'	.....((....))... ( -0.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr10:92653942-92653957	KIF11	HGNC:6388	ENSG00000138160	GGGAGGCUGAGGCGGG
hsa_m5C_515	chr10	92654074	92654075	+	ENST00000260731	C3696	m5C	C8	5'-GGGGAGGCUGAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	13	chr10:92654068-92654080	KIF11	HGNC:6388	ENSG00000138160	GGGGAGGCUGAGG
hsa_m5C_516	chr10	103449765	103449766	-	ENST00000260743	C752	m5C	C7	5'-GGCUGGCGGCCAUCGG-3'	((((...))))..... ( -4.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr10:103449757-103449772	CALHM2	HGNC:23493	ENSG00000138172	GGCUGGCGGCCAUCGG
hsa_m5C_517	chr12	106066359	106066360	-	ENST00000261402	C2729	m5C	C8	5'-GGUCUGGCUGCGUGGAGCUGG-3'	...((((((......)))))) ( -5.60)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr12:106066347-106066367	NUAK1	HGNC:14311	ENSG00000074590	GGUCUGGCUGCGUGGAGCUGG
hsa_m5C_518	chr1	212414846	212414847	-	ENST00000261455	C40	m5C	C5	5'-GGAGCCGGUAGGUCCAGG-3'	(((.((....)))))... ( -5.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr1:212414834-212414851	PACC1	HGNC:25593	ENSG00000065600	GGAGCCGGUAGGUCCAGG
hsa_m5C_519	chr1	212410473	212410474	-	ENST00000261455	C213	m5C	C7	5'-GGCAGACGAGCAGGACAAGGAGACGG-3'	.((......))............... ( -0.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr1:212410455-212410480	PACC1	HGNC:25593	ENSG00000065600	GGCAGACGAGCAGGACAAGGAGACGG
hsa_m5C_520	chr1	212285978	212285979	+	ENST00000261461	C570	m5C	C5	5'-GGGGCCGGAGGGCCGUGGGGCCGGGGCGCAGGGG-3'	...(((....((((....))))..)))....... (-13.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;RNAfold:(High)	m6A-Atlas database	28418038	34	chr1:212285975-212286008	PPP2R5A	HGNC:9309	ENSG00000066027	GGGGCCGGAGGGCCGUGGGGCCGGGGCGCAGGGG
hsa_m5C_521	chr14	77320615	77320616	-	ENST00000261534	C268	m5C	C3	5'-GGCCCCCAGGCUGCUAGGGCCGCAGG-3'	(((((..((....)).)))))..... (-10.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr14:77320593-77320618	POMT2	HGNC:19743	ENSG00000009830	GGCCCCCAGGCUGCUAGGGCCGCAGG
hsa_m5C_522	chr14	77320614	77320615	-	ENST00000261534	C269	m5C	C4	5'-GGCCCCCAGGCUGCUAGGGCCGCAGG-3'	(((((..((....)).)))))..... (-10.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr14:77320593-77320618	POMT2	HGNC:19743	ENSG00000009830	GGCCCCCAGGCUGCUAGGGCCGCAGG
hsa_m5C_523	chr14	77320612	77320613	-	ENST00000261534	C271	m5C	C6	5'-GGCCCCCAGGCUGCUAGGGCCGCAGG-3'	(((((..((....)).)))))..... (-10.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr14:77320593-77320618	POMT2	HGNC:19743	ENSG00000009830	GGCCCCCAGGCUGCUAGGGCCGCAGG
hsa_m5C_524	chr18	21867907	21867908	+	ENST00000261537	C7055	m5C	C19	5'-GGUAGAGUAGGAUCAGGACAGUGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	24	chr18:21867890-21867913	MIB1	HGNC:21086	ENSG00000101752	GGUAGAGUAGGAUCAGGACAGUGG
hsa_m5C_525	chr16	27749795	27749796	+	ENST00000261588	C2863	m5C	C5	5'-GGAGCAGCCAGGGCUGUCGAGAGGGCAGG-3'	((.....))....(((((.....))))). ( -6.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	29	chr16:27749792-27749820	KATNIP	HGNC:29068	ENSG00000047578	GGAGCAGCCAGGGCUGUCGAGAGGGCAGG
hsa_m5C_526	chr18	32091973	32091974	+	ENST00000261593	C101	m5C	C6	5'-GGUGACGGCCGGGUAGG-3'	(((....)))....... ( -3.00)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	17	chr18:32091969-32091985	RNF138	HGNC:17765	ENSG00000134758	GGUGACGGCCGGGUAGG
hsa_m5C_527	chr15	28256124	28256125	-	ENST00000261609	C2846	m5C	C8	5'-GGAGGAGCGGGCCCGGG-3'	...((......)).... ( -0.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr15:28256116-28256132	HERC2	HGNC:4868	ENSG00000128731	GGAGGAGCGGGCCCGGG
hsa_m5C_528	chr15	28113576	28113577	-	ENST00000261609	C14151	m5C	C17	5'-GGCUACGAACUGGAGACGAUG^GUGUGUGG-3'	..(((((.((((.......)))).))))) ( -4.00)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr15:28113276-28113283;28113573-28113593	HERC2	HGNC:4868	ENSG00000128731	GGCUACGAACUGGAGACGAUGGUGUGUGG
hsa_m5C_529	chr16	87836548	87836549	-	ENST00000261622	C1324	m5C	C26	5'-GGCUCUGCGUGGCCCUGGCCAUCAUCGG-3'	....(((.(((((....)))))...))) ( -6.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr16:87836547-87836574	SLC7A5	HGNC:11063	ENSG00000103257	GGCUCUGCGUGGCCCUGGCCAUCAUCGG
hsa_m5C_530	chr16	87869493	87869494	-	ENST00000261622	C14	m5C	C4	5'-GGGCGGCGGGCGG-3'	..((.....)).. ( -1.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	13	chr16:87869485-87869497	SLC7A5	HGNC:11063	ENSG00000103257	GGGCGGCGGGCGG
hsa_m5C_531	chr17	15999959	15999960	+	ENST00000261647	C137	m5C	C17	5'-GGCAGGAGGUCCGGGGCCCGAGG-3'	(((.((....))...)))..... ( -4.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr17:15999944-15999966	TTC19	HGNC:26006	ENSG00000011295	GGCAGGAGGUCCGGGGCCCGAGG
hsa_m5C_532	chr17	16948774	16948775	-	ENST00000261652	C451	m5C	C9	5'-GGAAGGUACCAAGGAUUGG-3'	........((((...)))) ( -0.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr17:16948765-16948783	TNFRSF13B	HGNC:18153	ENSG00000240505	GGAAGGUACCAAGGAUUGG
hsa_m5C_533	chr17	31862689	31862690	-	ENST00000261708	C2544	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	lung	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr17:31862681-31862695	UTP6	HGNC:18279	ENSG00000108651	GGAGGCUGAGGCAGG
hsa_m5C_534	chr17	32447016	32447017	+	ENST00000261712	C178	m5C	C12	5'-GGAACUGGGAUCUCUCCUGGCAAAGACUGG-3'	....((((((....)))))).......... ( -5.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	30	chr17:32447006-32447035	PSMD11	HGNC:9556	ENSG00000108671	GGAACUGGGAUCUCUCCUGGCAAAGACUGG
hsa_m5C_535	chr17	29390974	29390975	+	ENST00000261716	C613	m5C	C21	5'-GGGUAGCGGCUACCGGAGCGCUGCAGG-3'	..((((((.((.....))))))))... ( -9.30)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr17:29390955-29390981	TAOK1	HGNC:29259	ENSG00000160551	GGGUAGCGGCUACCGGAGCGCUGCAGG
hsa_m5C_536	chr12	111306963	111306964	+	ENST00000261726	C915	m5C	C10	5'-GGCUGGAGGCCGCGCUGG-3'	((((...))))....... ( -4.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr12:111306955-111306972	CUX2	HGNC:19347	ENSG00000111249	GGCUGGAGGCCGCGCUGG
hsa_m5C_537	chr12	111306964	111306965	+	ENST00000261726	C916	m5C	C11	5'-GGCUGGAGGCCGCGCUGG-3'	((((...))))....... ( -4.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr12:111306955-111306972	CUX2	HGNC:19347	ENSG00000111249	GGCUGGAGGCCGCGCUGG
hsa_m5C_538	chr12	110036263	110036264	+	ENST00000261739	C1772	m5C	C23	5'-GGAGUCCAGCAGGAGCCAG^GAACUUUCAGG-3'	((..(((....))).))............. ( -4.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	30	chr12:110033939-110033957;110036261-110036271	ANKRD13A	HGNC:21268	ENSG00000076513	GGAGUCCAGCAGGAGCCAGGAACUUUCAGG
hsa_m5C_539	chr16	70800959	70800960	-	ENST00000261776	C199	m5C	C3	5'-GGCCCCGGCGCGGCCCCGG-3'	((((.......)))).... ( -5.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr16:70800944-70800962	VAC14	HGNC:25507	ENSG00000103043	GGCCCCGGCGCGGCCCCGG
hsa_m5C_540	chr16	70800957	70800958	-	ENST00000261776	C201	m5C	C5	5'-GGCCCCGGCGCGGCCCCGG-3'	((((.......)))).... ( -5.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr16:70800944-70800962	VAC14	HGNC:25507	ENSG00000103043	GGCCCCGGCGCGGCCCCGG
hsa_m5C_541	chr16	70800956	70800957	-	ENST00000261776	C202	m5C	C6	5'-GGCCCCGGCGCGGCCCCGG-3'	((((.......)))).... ( -5.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr16:70800944-70800962	VAC14	HGNC:25507	ENSG00000103043	GGCCCCGGCGCGGCCCCGG
hsa_m5C_542	chr16	68843559	68843560	+	ENST00000261778	C30	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database	28418038	11	chr16:68843555-68843565	TANGO6	HGNC:25749	ENSG00000103047	GGCGGCGGCGG
hsa_m5C_543	chr5	150521210	150521211	+	ENST00000261797	C440	m5C	C17	5'-GGGGCCUUGGGGUAGCCAGGGCAGGCCGG-3'	((.(((((((.....)))))))...)).. (-14.00)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	29	chr5:150521195-150521223	NDST1	HGNC:7680	ENSG00000070614	GGGGCCUUGGGGUAGCCAGGGCAGGCCGG
hsa_m5C_544	chr5	150521215	150521216	+	ENST00000261797	C445	m5C	C22	5'-GGGGCCUUGGGGUAGCCAGGGCAGGCCGG-3'	((.(((((((.....)))))))...)).. (-14.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	29	chr5:150521195-150521223	NDST1	HGNC:7680	ENSG00000070614	GGGGCCUUGGGGUAGCCAGGGCAGGCCGG
hsa_m5C_545	chr5	149551300	149551301	-	ENST00000261798	C139	m5C	C25	5'-GGCCGGAGCCGGCGGCAGUGGUGGCAGCGG-3'	..(((..((((.((....)).))))..))) (-12.60)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	30	chr5:149551296-149551325	CSNK1A1	HGNC:2451	ENSG00000113712	GGCCGGAGCCGGCGGCAGUGGUGGCAGCGG
hsa_m5C_546	chr5	149551000	149551001	-	ENST00000261798	C439	m5C	C6	5'-GGUGUCGGGGCUUGG-3'	NA	loop	mRNA	293T;liver,lung,Testis,HeLa;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;38168991	28418038;30872485;38168991	15	chr5:149550992-149551006	CSNK1A1	HGNC:2451	ENSG00000113712	GGUGUCGGGGCUUGG
hsa_m5C_547	chr5	140245711	140245712	-	ENST00000261813	C659	m5C	C19	5'-GGAGAGGGAAGAUGGGAGCCAGGG-3'	.....((...........)).... ( -0.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	24	chr5:140245707-140245730	PFDN1	HGNC:8866	ENSG00000113068	GGAGAGGGAAGAUGGGAGCCAGGG
hsa_m5C_548	chr5	140245710	140245711	-	ENST00000261813	C660	m5C	C20	5'-GGAGAGGGAAGAUGGGAGCCAGGG-3'	.....((...........)).... ( -0.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	24	chr5:140245707-140245730	PFDN1	HGNC:8866	ENSG00000113068	GGAGAGGGAAGAUGGGAGCCAGGG
hsa_m5C_549	chr5	140245921	140245922	-	ENST00000261813	C449	m5C	C9	5'-GGUGGGGGCAGAGG-3'	NA	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database	28418038	14	chr5:140245917-140245930	PFDN1	HGNC:8866	ENSG00000113068	GGUGGGGGCAGAGG
hsa_m5C_550	chr15	50707413	50707414	-	ENST00000261854	C2122	m5C	C3	5'-GGCCAGGCGCGGUGG-3'	.(((......))).. ( -2.20)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr15:50707402-50707416	SPPL2A	HGNC:30227	ENSG00000138600	GGCCAGGCGCGGUGG
hsa_m5C_551	chr15	50707412	50707413	-	ENST00000261854	C2123	m5C	C4	5'-GGCCAGGCGCGGUGG-3'	.(((......))).. ( -2.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr15:50707402-50707416	SPPL2A	HGNC:30227	ENSG00000138600	GGCCAGGCGCGGUGG
hsa_m5C_552	chr15	50707408	50707409	-	ENST00000261854	C2127	m5C	C8	5'-GGCCAGGCGCGGUGG-3'	.(((......))).. ( -2.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr15:50707402-50707416	SPPL2A	HGNC:30227	ENSG00000138600	GGCCAGGCGCGGUGG
hsa_m5C_553	chr15	50707406	50707407	-	ENST00000261854	C2129	m5C	C10	5'-GGCCAGGCGCGGUGG-3'	.(((......))).. ( -2.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr15:50707402-50707416	SPPL2A	HGNC:30227	ENSG00000138600	GGCCAGGCGCGGUGG
hsa_m5C_554	chr15	50707369	50707370	-	ENST00000261854	C2166	m5C	C7	5'-GGGAGGCCAAGGCGGGCGGAUCACG-3'	((...(((......)))...))... ( -5.20)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr15:50707352-50707376	SPPL2A	HGNC:30227	ENSG00000138600	GGGAGGCCAAGGCGGGCGGAUCACG
hsa_m5C_555	chr15	50707368	50707369	-	ENST00000261854	C2167	m5C	C8	5'-GGGAGGCCAAGGCGGGCGGAUCACG-3'	((...(((......)))...))... ( -5.20)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr15:50707352-50707376	SPPL2A	HGNC:30227	ENSG00000138600	GGGAGGCCAAGGCGGGCGGAUCACG
hsa_m5C_556	chr15	50707363	50707364	-	ENST00000261854	C2172	m5C	C13	5'-GGGAGGCCAAGGCGGGCGGAUCACG-3'	((...(((......)))...))... ( -5.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr15:50707352-50707376	SPPL2A	HGNC:30227	ENSG00000138600	GGGAGGCCAAGGCGGGCGGAUCACG
hsa_m5C_557	chr15	50707359	50707360	-	ENST00000261854	C2176	m5C	C17	5'-GGGAGGCCAAGGCGGGCGGAUCACG-3'	((...(((......)))...))... ( -5.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr15:50707352-50707376	SPPL2A	HGNC:30227	ENSG00000138600	GGGAGGCCAAGGCGGGCGGAUCACG
hsa_m5C_558	chr15	50707354	50707355	-	ENST00000261854	C2181	m5C	C22	5'-GGGAGGCCAAGGCGGGCGGAUCACG-3'	((...(((......)))...))... ( -5.20)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr15:50707352-50707376	SPPL2A	HGNC:30227	ENSG00000138600	GGGAGGCCAAGGCGGGCGGAUCACG
hsa_m5C_559	chr15	50707352	50707353	-	ENST00000261854	C2183	m5C	C24	5'-GGGAGGCCAAGGCGGGCGGAUCACG-3'	((...(((......)))...))... ( -5.20)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr15:50707352-50707376	SPPL2A	HGNC:30227	ENSG00000138600	GGGAGGCCAAGGCGGGCGGAUCACG
hsa_m5C_560	chr15	73926506	73926507	+	ENST00000261921	C46	m5C	C5	5'-GGGGCUGGCCAUGUAAGG-3'	((......))........ ( -1.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	18	chr15:73926503-73926520	LOXL1	HGNC:6665	ENSG00000129038	GGGGCUGGCCAUGUAAGG
hsa_m5C_561	chr15	73926510	73926511	+	ENST00000261921	C50	m5C	C9	5'-GGGGCUGGCCAUGUAAGG-3'	((......))........ ( -1.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	18	chr15:73926503-73926520	LOXL1	HGNC:6665	ENSG00000129038	GGGGCUGGCCAUGUAAGG
hsa_m5C_562	chr15	73926511	73926512	+	ENST00000261921	C51	m5C	C10	5'-GGGGCUGGCCAUGUAAGG-3'	((......))........ ( -1.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	18	chr15:73926503-73926520	LOXL1	HGNC:6665	ENSG00000129038	GGGGCUGGCCAUGUAAGG
hsa_m5C_563	chr5	176507978	176507979	+	ENST00000261942	C2390	m5C	C8	5'-GGACUAGCAGGGCCUGUGGUGG-3'	..((((.(((...))))))).. ( -3.20)	loop	mRNA	Testis,HeLa;293T;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;38168991	22	chr5:176507972-176507993	FAF2	HGNC:24666	ENSG00000113194	GGACUAGCAGGGCCUGUGGUGG
hsa_m5C_564	chr12	53039307	53039308	+	ENST00000262056	C1675	m5C	C12	5'-GGUCCAGGCGACGGAGG-3'	.(((.....)))..... ( -1.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr12:53039297-53039313	EIF4B	HGNC:3285	ENSG00000063046	GGUCCAGGCGACGGAGG
hsa_m5C_565	chr7	16753876	16753877	+	ENST00000262067	C123	m5C	C3	5'-GGCCAGGCCCCAAAGGCAAGG-3'	..((..(((.....)))..)) ( -5.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	21	chr7:16753875-16753895	TSPAN13	HGNC:21643	ENSG00000106537	GGCCAGGCCCCAAAGGCAAGG
hsa_m5C_566	chr7	16753877	16753878	+	ENST00000262067	C124	m5C	C4	5'-GGCCAGGCCCCAAAGGCAAGG-3'	..((..(((.....)))..)) ( -5.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	21	chr7:16753875-16753895	TSPAN13	HGNC:21643	ENSG00000106537	GGCCAGGCCCCAAAGGCAAGG
hsa_m5C_567	chr16	53434740	53434741	+	ENST00000262133	C271	m5C	C3	5'-GGCGCGGGCCGAGGCCUGGG-3'	....(((((....))))).. ( -8.10)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr16:53434739-53434758	RBL2	HGNC:9894	ENSG00000103479	GGCGCGGGCCGAGGCCUGGG
hsa_m5C_568	chr18	48950083	48950084	-	ENST00000262158	C882	m5C	C3	5'-GGCCGUGGAGUCCCGCGGCGG-3'	.(((((((....))))))).. (-13.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr18:48950066-48950086	SMAD7	HGNC:6773	ENSG00000101665	GGCCGUGGAGUCCCGCGGCGG
hsa_m5C_569	chr18	48950169	48950170	-	ENST00000262158	C796	m5C	C15	5'-GGCGCCGGCGCGGCCGGGG-3'	....(((((...))))).. ( -8.40)	loop	mRNA	Muscle	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	19	chr18:48950166-48950184	SMAD7	HGNC:6773	ENSG00000101665	GGCGCCGGCGCGGCCGGGG
hsa_m5C_570	chr18	48950274	48950275	-	ENST00000262158	C691	m5C	C6	5'-GGGGCCGGUGGCGGCGGCCCGGGCAGGG-3'	.((((((.......))))))........ (-13.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr18:48950253-48950280	SMAD7	HGNC:6773	ENSG00000101665	GGGGCCGGUGGCGGCGGCCCGGGCAGGG
hsa_m5C_571	chr18	48950268	48950269	-	ENST00000262158	C697	m5C	C12	5'-GGGGCCGGUGGCGGCGGCCCGGGCAGGG-3'	.((((((.......))))))........ (-13.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr18:48950253-48950280	SMAD7	HGNC:6773	ENSG00000101665	GGGGCCGGUGGCGGCGGCCCGGGCAGGG
hsa_m5C_572	chr18	48950265	48950266	-	ENST00000262158	C700	m5C	C15	5'-GGGGCCGGUGGCGGCGGCCCGGGCAGGG-3'	.((((((.......))))))........ (-13.50)	bulge	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr18:48950253-48950280	SMAD7	HGNC:6773	ENSG00000101665	GGGGCCGGUGGCGGCGGCCCGGGCAGGG
hsa_m5C_573	chr14	102593109	102593110	+	ENST00000262241	C462	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	11	chr14:102593105-102593115	RCOR1	HGNC:17441	ENSG00000089902	GGCGGCGGCGG
hsa_m5C_574	chr14	102593112	102593113	+	ENST00000262241	C465	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	11	chr14:102593105-102593115	RCOR1	HGNC:17441	ENSG00000089902	GGCGGCGGCGG
hsa_m5C_575	chr16	2116115	2116116	-	ENST00000262304	C1934	m5C	C7	5'-GGAG^GUCAUGGUAUUCCCGG-3'	((((.........))))... ( -1.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr16:2116103-2116118;2116529-2116532	PKD1	HGNC:9008	ENSG00000008710	GGAGGUCAUGGUAUUCCCGG
hsa_m5C_576	chr16	2118153	2118154	-	ENST00000262304	C1047	m5C	C3	5'-GGCCCCACGGACCUCUGGCCUCUGG-3'	((((............))))..... ( -5.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	25	chr16:2118132-2118156	PKD1	HGNC:9008	ENSG00000008710	GGCCCCACGGACCUCUGGCCUCUGG
hsa_m5C_577	chr16	2118152	2118153	-	ENST00000262304	C1048	m5C	C4	5'-GGCCCCACGGACCUCUGGCCUCUGG-3'	((((............))))..... ( -5.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr16:2118132-2118156	PKD1	HGNC:9008	ENSG00000008710	GGCCCCACGGACCUCUGGCCUCUGG
hsa_m5C_578	chr16	2118151	2118152	-	ENST00000262304	C1049	m5C	C5	5'-GGCCCCACGGACCUCUGGCCUCUGG-3'	((((............))))..... ( -5.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr16:2118132-2118156	PKD1	HGNC:9008	ENSG00000008710	GGCCCCACGGACCUCUGGCCUCUGG
hsa_m5C_579	chr16	2118150	2118151	-	ENST00000262304	C1050	m5C	C6	5'-GGCCCCACGGACCUCUGGCCUCUGG-3'	((((............))))..... ( -5.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	25	chr16:2118132-2118156	PKD1	HGNC:9008	ENSG00000008710	GGCCCCACGGACCUCUGGCCUCUGG
hsa_m5C_580	chr16	2111215	2111216	-	ENST00000262304	C4160	m5C	C17	5'-GGCUCACGGCCUACGUCACCGGGAACCCGG-3'	((((...)))).......((((....)))) ( -9.50)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr16:2111203-2111232	PKD1	HGNC:9008	ENSG00000008710	GGCUCACGGCCUACGUCACCGGGAACCCGG
hsa_m5C_581	chr16	2135726	2135727	-	ENST00000262304	C172	m5C	C8	5'-GGGCGGGCCUGGGGACGGCGGG-3'	......(((.......)))... ( -3.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	22	chr16:2135713-2135734	PKD1	HGNC:9008	ENSG00000008710	GGGCGGGCCUGGGGACGGCGGG
hsa_m5C_582	chr16	2135725	2135726	-	ENST00000262304	C173	m5C	C9	5'-GGGCGGGCCUGGGGACGGCGGG-3'	......(((.......)))... ( -3.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	22	chr16:2135713-2135734	PKD1	HGNC:9008	ENSG00000008710	GGGCGGGCCUGGGGACGGCGGG
hsa_m5C_583	chr16	2135718	2135719	-	ENST00000262304	C180	m5C	C16	5'-GGGCGGGCCUGGGGACGGCGGG-3'	......(((.......)))... ( -3.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	22	chr16:2135713-2135734	PKD1	HGNC:9008	ENSG00000008710	GGGCGGGCCUGGGGACGGCGGG
hsa_m5C_584	chr16	521594	521595	+	ENST00000262305	C3385	m5C	C28	5'-GGGCUCUGACCACCUAUGGGGGCCGGGCAGGAGCCUCUGGG-3'	(((((((..((.(((....)))..))...)))))))..... (-16.00)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	41	chr16:521568-521608	RAB11FIP3	HGNC:17224	ENSG00000090565	GGGCUCUGACCACCUAUGGGGGCCGGGCAGGAGCCUCUGGG
hsa_m5C_585	chr16	510727	510728	+	ENST00000262305	C1926	m5C	C15	5'-GGUCCUGGAAGAGACCCGGCGUCAGAAGG-3'	((((((...)).))))............. ( -4.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr16:510714-510742	RAB11FIP3	HGNC:17224	ENSG00000090565	GGUCCUGGAAGAGACCCGGCGUCAGAAGG
hsa_m5C_586	chr16	510732	510733	+	ENST00000262305	C1931	m5C	C20	5'-GGUCCUGGAAGAGACCCGGCGUCAGAAGG-3'	((((((...)).))))............. ( -4.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr16:510714-510742	RAB11FIP3	HGNC:17224	ENSG00000090565	GGUCCUGGAAGAGACCCGGCGUCAGAAGG
hsa_m5C_587	chr16	352571	352572	-	ENST00000262320	C152	m5C	C14	5'-GGGCGGGUGGGAGCUGGCGGCUGGG-3'	..((.(((....))).))....... ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;RNAfold:(High)	RMVar database	28418038	25	chr16:352561-352585	AXIN1	HGNC:903	ENSG00000103126	GGGCGGGUGGGAGCUGGCGGCUGGG
hsa_m5C_588	chr16	352567	352568	-	ENST00000262320	C156	m5C	C18	5'-GGGCGGGUGGGAGCUGGCGGCUGGG-3'	..((.(((....))).))....... ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	25	chr16:352561-352585	AXIN1	HGNC:903	ENSG00000103126	GGGCGGGUGGGAGCUGGCGGCUGGG
hsa_m5C_589	chr9	4490512	4490513	+	ENST00000262352	C46	m5C	C35	5'-GGGCUGGCAGGGCGGCGGGCGCGGUGCGCGAUCCCGGG-3'	..((((......))))(((((((...))))..)))... (-13.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	38	chr9:4490479-4490516	SLC1A1	HGNC:10939	ENSG00000106688	GGGCUGGCAGGGCGGCGGGCGCGGUGCGCGAUCCCGGG
hsa_m5C_590	chr16	3880512	3880513	-	ENST00000262367	C201	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969	11	chr16:3880511-3880521	CREBBP	HGNC:2348	ENSG00000005339	GGCGGCGGCGG
hsa_m5C_591	chr16	4456014	4456015	+	ENST00000262375	C1940	m5C	C13	5'-GGGAGCGUGGGGCCCCCAGG-3'	(((.((.....)).)))... ( -8.10)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr16:4456003-4456022	DNAJA3	HGNC:11808	ENSG00000103423	GGGAGCGUGGGGCCCCCAGG
hsa_m5C_592	chr17	27294294	27294295	+	ENST00000262394	C182	m5C	C5	5'-GGGCCCGGGAGGGACCAACUUGG-3'	((.(((....))).))....... ( -7.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	23	chr17:27294291-27294313	WSB1	HGNC:19221	ENSG00000109046	GGGCCCGGGAGGGACCAACUUGG
hsa_m5C_593	chr17	28749653	28749654	+	ENST00000262395	C1592	m5C	C12	5'-GGAGAGGGGGCCGG-3'	((........)).. ( -0.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr17:28749643-28749656	TRAF4	HGNC:12034	ENSG00000076604	GGAGAGGGGGCCGG
hsa_m5C_594	chr16	86510550	86510551	+	ENST00000262426	C25	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	11	chr16:86510546-86510556	FOXF1	HGNC:3809	ENSG00000103241	GGCGGCGGCGG
hsa_m5C_595	chr16	86510914	86510915	+	ENST00000262426	C389	m5C	C7	5'-GGGCGGCCCGGCAAGG-3'	(((...)))....... ( -2.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr16:86510909-86510924	FOXF1	HGNC:3809	ENSG00000103241	GGGCGGCCCGGCAAGG
hsa_m5C_596	chr7	128502796	128502797	+	ENST00000262432	C2036	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	liver	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr7:128502792-128502806	METTL2B	HGNC:18272	ENSG00000165055	GGAGGCUGAGGCAGG
hsa_m5C_597	chr7	128502802	128502803	+	ENST00000262432	C2042	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	liver,spleen;liver	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr7:128502792-128502806	METTL2B	HGNC:18272	ENSG00000165055	GGAGGCUGAGGCAGG
hsa_m5C_598	chr17	64543392	64543393	-	ENST00000262435	C5129	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr17:64543384-64543398	SMURF2	HGNC:16809	ENSG00000108854	GGAGGCUGAGGCAGG
hsa_m5C_599	chr9	100099411	100099412	+	ENST00000262457	C170	m5C	C9	5'-GGAGGAGGCGAGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	13	chr9:100099404-100099416	INVS	HGNC:17870	ENSG00000119509	GGAGGAGGCGAGG
hsa_m5C_600	chr17	4943254	4943255	+	ENST00000262482	C1063	m5C	C13	5'-GGGAUUGUGGGACUGCUGGUUUUGG-3'	........((((((...)))))).. ( -1.00)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	25	chr17:4943243-4943267	RNF167	HGNC:24544	ENSG00000108523	GGGAUUGUGGGACUGCUGGUUUUGG
hsa_m5C_601	chr17	4943180	4943181	+	ENST00000262482	C989	m5C	C6	5'-GGG^GGCUCGGGUGCUUCUGG-3'	((((((......)))))).. ( -6.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	20	chr17:4942939-4942941;4943179-4943195	RNF167	HGNC:24544	ENSG00000108523	GGGGGCUCGGGUGCUUCUGG
hsa_m5C_602	chr20	13221447	13221448	+	ENST00000262487	C175	m5C	C37	5'-GGGUGGCCUCCGGCCCGGCCCGGGUCCCGGGCUGUCCCGGG-3'	((....)).((((..((((((((...))))))))..)))). (-24.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	41	chr20:13221412-13221452	ISM1	HGNC:16213	ENSG00000101230	GGGUGGCCUCCGGCCCGGCCCGGGUCCCGGGCUGUCCCGGG
hsa_m5C_603	chr20	13221448	13221449	+	ENST00000262487	C176	m5C	C38	5'-GGGUGGCCUCCGGCCCGGCCCGGGUCCCGGGCUGUCCCGGG-3'	((....)).((((..((((((((...))))))))..)))). (-24.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	41	chr20:13221412-13221452	ISM1	HGNC:16213	ENSG00000101230	GGGUGGCCUCCGGCCCGGCCCGGGUCCCGGGCUGUCCCGGG
hsa_m5C_604	chr16	58129146	58129147	-	ENST00000262498	C235	m5C	C6	5'-GGCUCCGGGGGCGGCUUAGG-3'	.((((...))))........ ( -3.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	20	chr16:58129133-58129152	CFAP20	HGNC:29523	ENSG00000070761	GGCUCCGGGGGCGGCUUAGG
hsa_m5C_605	chr16	58197886	58197887	-	ENST00000262506	C220	m5C	C5	5'-GGCCCGGCCUGGCGCGG-3'	.(((......))).... ( -3.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	17	chr16:58197875-58197891	CSNK2A2	HGNC:2459	ENSG00000070770	GGCCCGGCCUGGCGCGG
hsa_m5C_606	chr8	143539073	143539074	-	ENST00000262577	C319	m5C	C3	5'-GGCCCGGGGGGG-3'	..(((....))) ( -3.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMVar database	28418038	12	chr8:143539065-143539076	ZC3H3	HGNC:28972	ENSG00000014164	GGCCCGGGGGGG
hsa_m5C_607	chr8	143539072	143539073	-	ENST00000262577	C320	m5C	C4	5'-GGCCCGGGGGGG-3'	..(((....))) ( -3.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMVar database	28418038	12	chr8:143539065-143539076	ZC3H3	HGNC:28972	ENSG00000014164	GGCCCGGGGGGG
hsa_m5C_608	chr8	143539071	143539072	-	ENST00000262577	C321	m5C	C5	5'-GGCCCGGGGGGG-3'	..(((....))) ( -3.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMVar database	28418038	12	chr8:143539065-143539076	ZC3H3	HGNC:28972	ENSG00000014164	GGCCCGGGGGGG
hsa_m5C_609	chr19	35633715	35633716	+	ENST00000262633	C832	m5C	C3	5'-GGCCUAGGCCUGGGGUUGGG-3'	(((....))).......... ( -4.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	20	chr19:35633714-35633733	RBM42	HGNC:28117	ENSG00000126254	GGCCUAGGCCUGGGGUUGGG
hsa_m5C_610	chr19	35633721	35633722	+	ENST00000262633	C838	m5C	C9	5'-GGCCUAGGCCUGGGGUUGGG-3'	(((....))).......... ( -4.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	20	chr19:35633714-35633733	RBM42	HGNC:28117	ENSG00000126254	GGCCUAGGCCUGGGGUUGGG
hsa_m5C_611	chr19	35633722	35633723	+	ENST00000262633	C839	m5C	C10	5'-GGCCUAGGCCUGGGGUUGGG-3'	(((....))).......... ( -4.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	20	chr19:35633714-35633733	RBM42	HGNC:28117	ENSG00000126254	GGCCUAGGCCUGGGGUUGGG
hsa_m5C_612	chr19	29824092	29824093	+	ENST00000262643	C1735	m5C	C7	5'-GGAGGGCCACGGUGG-3'	((....))....... ( -0.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr19:29824087-29824101	CCNE1	HGNC:1589	ENSG00000105173	GGAGGGCCACGGUGG
hsa_m5C_613	chr19	29824095	29824096	+	ENST00000262643	C1738	m5C	C10	5'-GGAGGGCCACGGUGG-3'	((....))....... ( -0.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr19:29824087-29824101	CCNE1	HGNC:1589	ENSG00000105173	GGAGGGCCACGGUGG
hsa_m5C_614	chr1	50968946	50968947	+	ENST00000262662	C1071	m5C	C21	5'-GGGGUGAAAGGAGCAGGGACCGGCGAUCUAGGGGGG-3'	.((((....((........))....))))....... ( -3.50)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	36	chr1:50968927-50968962	CDKN2C	HGNC:1789	ENSG00000123080	GGGGUGAAAGGAGCAGGGACCGGCGAUCUAGGGGGG
hsa_m5C_615	chr14	22982173	22982174	-	ENST00000262713	C378	m5C	C9	5'-GGGACCCCCGGGCCGGGCAAGGG-3'	......(((..((...))..))) ( -5.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	23	chr14:22982160-22982182	AJUBA	HGNC:20250	ENSG00000129474	GGGACCCCCGGGCCGGGCAAGGG
hsa_m5C_616	chr14	22982169	22982170	-	ENST00000262713	C382	m5C	C13	5'-GGGACCCCCGGGCCGGGCAAGGG-3'	......(((..((...))..))) ( -5.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr14:22982160-22982182	AJUBA	HGNC:20250	ENSG00000129474	GGGACCCCCGGGCCGGGCAAGGG
hsa_m5C_617	chr14	22982168	22982169	-	ENST00000262713	C383	m5C	C14	5'-GGGACCCCCGGGCCGGGCAAGGG-3'	......(((..((...))..))) ( -5.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr14:22982160-22982182	AJUBA	HGNC:20250	ENSG00000129474	GGGACCCCCGGGCCGGGCAAGGG
hsa_m5C_618	chr14	22973317	22973318	-	ENST00000262713	C2027	m5C	C10	5'-GGGGAGGACCCCAAGG-3'	((((....)))).... ( -7.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr14:22973312-22973327	AJUBA	HGNC:20250	ENSG00000129474	GGGGAGGACCCCAAGG
hsa_m5C_619	chr14	20367726	20367727	-	ENST00000262715	C8715	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr14:20367718-20367732	TEP1	HGNC:11726	ENSG00000129566	GGAGGCUGAGGCAGG
hsa_m5C_620	chr1	46042201	46042202	-	ENST00000262741	C3534	m5C	C11	5'-GGAGUGGGGGCAGG-3'	NA	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	14	chr1:46042199-46042212	PIK3R3	HGNC:8981	ENSG00000117461	GGAGUGGGGGCAGG
hsa_m5C_621	chr22	50705084	50705085	+	ENST00000262795	C2069	m5C	C9	5'-GGACGGGGCUCGG-3'	NA	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	13	chr22:50705077-50705089	SHANK3	HGNC:14294	ENSG00000251322	GGACGGGGCUCGG
hsa_m5C_622	chr22	50731062	50731063	+	ENST00000262795	C5025	m5C	C6	5'-GGCCCCGGCCCCGGCGCCCCCGG-3'	(((.(((....))).)))..... ( -8.60)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr22:50731058-50731080	SHANK3	HGNC:14294	ENSG00000251322	GGCCCCGGCCCCGGCGCCCCCGG
hsa_m5C_623	chr19	18855226	18855227	+	ENST00000262803	C1780	m5C	C3	5'-GGCCCGGCAAGGCAACGG-3'	.(((......)))..... ( -3.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	18	chr19:18855225-18855242	UPF1	HGNC:9962	ENSG00000005007	GGCCCGGCAAGGCAACGG
hsa_m5C_624	chr19	18855227	18855228	+	ENST00000262803	C1781	m5C	C4	5'-GGCCCGGCAAGGCAACGG-3'	.(((......)))..... ( -3.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	18	chr19:18855225-18855242	UPF1	HGNC:9962	ENSG00000005007	GGCCCGGCAAGGCAACGG
hsa_m5C_625	chr19	18855228	18855229	+	ENST00000262803	C1782	m5C	C5	5'-GGCCCGGCAAGGCAACGG-3'	.(((......)))..... ( -3.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	18	chr19:18855225-18855242	UPF1	HGNC:9962	ENSG00000005007	GGCCCGGCAAGGCAACGG
hsa_m5C_626	chr19	18856910	18856911	+	ENST00000262803	C2110	m5C	C5	5'-GGCGCCGGUGACCCGAGGCUGG-3'	(((..(((....)))..))).. ( -7.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr19:18856907-18856928	UPF1	HGNC:9962	ENSG00000005007	GGCGCCGGUGACCCGAGGCUGG
hsa_m5C_627	chr6	104849237	104849238	-	ENST00000262903	C507	m5C	C5	5'-GGAUCGGUGGAAUGCUUGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr6:104849224-104849242	HACE1	HGNC:21033	ENSG00000085382	GGAUCGGUGGAAUGCUUGG
hsa_m5C_628	chr20	3572851	3572852	+	ENST00000262919	C2083	m5C	C13	5'-GGACCUGGUAUUCGGUGUGUGUGG-3'	..(((........)))........ ( -2.10)	loop	mRNA	HeLa,siControl;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;RMVar database	28418038;38168991	24	chr20:3572840-3572863	ATRN	HGNC:885	ENSG00000088812	GGACCUGGUAUUCGGUGUGUGUGG
hsa_m5C_629	chr20	3649154	3649155	+	ENST00000262919	C6688	m5C	C4	5'-GGGCAGAAAAAGGGAAUGGCAGGGAGUAAGAGGCGCUGGG-3'	...................(((.............))).. ( -1.00)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	40	chr20:3649152-3649191	ATRN	HGNC:885	ENSG00000088812	GGGCAGAAAAAGGGAAUGGCAGGGAGUAAGAGGCGCUGGG
hsa_m5C_630	chr7	102582868	102582869	-	ENST00000262940	C2381	m5C	C17	5'-GGACUCAUUGGCCCGGCUGCUCCGG-3'	............((((.....)))) ( -4.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	25	chr7:102582861-102582885	RASA4	HGNC:23181	ENSG00000105808	GGACUCAUUGGCCCGGCUGCUCCGG
hsa_m5C_631	chr7	102596022	102596023	-	ENST00000262940	C911	m5C	C8	5'-GGUCAAGCUGGGCAUGCAG^GGCCCAGGG-3'	.......((((((.......)))))).. (-11.00)	loop	mRNA	Muscle	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	28	chr7:102595776-102595784;102596012-102596030	RASA4	HGNC:23181	ENSG00000105808	GGUCAAGCUGGGCAUGCAGGGCCCAGGG
hsa_m5C_632	chr19	4123981	4123982	-	ENST00000262948	C141	m5C	C4	5'-GGCCUGGGCCGCGGCCGCAGCCCCGG-3'	..((.((((.((....)).)))).)) (-11.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr19:4123960-4123985	MAP2K2	HGNC:6842	ENSG00000126934	GGCCUGGGCCGCGGCCGCAGCCCCGG
hsa_m5C_633	chr19	5286176	5286177	-	ENST00000262963	C207	m5C	C17	5'-GGGACCGGGGGGCCAUCCCCCUCCAGGG-3'	.(((..(((((.....)))))))).... (-12.80)	loop	mRNA	HeLa	RBS-Seq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30872485	28	chr19:5286166-5286193	PTPRS	HGNC:9681	ENSG00000105426	GGGACCGGGGGGCCAUCCCCCUCCAGGG
hsa_m5C_634	chr19	5286175	5286176	-	ENST00000262963	C208	m5C	C18	5'-GGGACCGGGGGGCCAUCCCCCUCCAGGG-3'	.(((..(((((.....)))))))).... (-12.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	28	chr19:5286166-5286193	PTPRS	HGNC:9681	ENSG00000105426	GGGACCGGGGGGCCAUCCCCCUCCAGGG
hsa_m5C_635	chr19	5286174	5286175	-	ENST00000262963	C209	m5C	C19	5'-GGGACCGGGGGGCCAUCCCCCUCCAGGG-3'	.(((..(((((.....)))))))).... (-12.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	28	chr19:5286166-5286193	PTPRS	HGNC:9681	ENSG00000105426	GGGACCGGGGGGCCAUCCCCCUCCAGGG
hsa_m5C_636	chr19	5286173	5286174	-	ENST00000262963	C210	m5C	C20	5'-GGGACCGGGGGGCCAUCCCCCUCCAGGG-3'	.(((..(((((.....)))))))).... (-12.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	28	chr19:5286166-5286193	PTPRS	HGNC:9681	ENSG00000105426	GGGACCGGGGGGCCAUCCCCCUCCAGGG
hsa_m5C_637	chr19	5286172	5286173	-	ENST00000262963	C211	m5C	C21	5'-GGGACCGGGGGGCCAUCCCCCUCCAGGG-3'	.(((..(((((.....)))))))).... (-12.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr19:5286166-5286193	PTPRS	HGNC:9681	ENSG00000105426	GGGACCGGGGGGCCAUCCCCCUCCAGGG
hsa_m5C_638	chr19	4038286	4038287	+	ENST00000262971	C1970	m5C	C11	5'-GGGACCCGGGCGGCGGGCGGUGGG-3'	....((((.((.....))..)))) ( -6.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	24	chr19:4038277-4038300	PIAS4	HGNC:17002	ENSG00000105229	GGGACCCGGGCGGCGGGCGGUGGG
hsa_m5C_639	chr19	4038289	4038290	+	ENST00000262971	C1973	m5C	C14	5'-GGGACCCGGGCGGCGGGCGGUGGG-3'	....((((.((.....))..)))) ( -6.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	24	chr19:4038277-4038300	PIAS4	HGNC:17002	ENSG00000105229	GGGACCCGGGCGGCGGGCGGUGGG
hsa_m5C_640	chr19	4038293	4038294	+	ENST00000262971	C1977	m5C	C18	5'-GGGACCCGGGCGGCGGGCGGUGGG-3'	....((((.((.....))..)))) ( -6.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	24	chr19:4038277-4038300	PIAS4	HGNC:17002	ENSG00000105229	GGGACCCGGGCGGCGGGCGGUGGG
hsa_m5C_641	chr10	30434225	30434226	+	ENST00000263056	C43	m5C	C6	5'-GGGGUCCGGCGCCCUGG-3'	(((((.....))))).. ( -5.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr10:30434221-30434237	MAP3K8	HGNC:6860	ENSG00000107968	GGGGUCCGGCGCCCUGG
hsa_m5C_642	chr10	30434229	30434230	+	ENST00000263056	C47	m5C	C10	5'-GGGGUCCGGCGCCCUGG-3'	(((((.....))))).. ( -5.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr10:30434221-30434237	MAP3K8	HGNC:6860	ENSG00000107968	GGGGUCCGGCGCCCUGG
hsa_m5C_643	chr17	4816724	4816725	+	ENST00000263088	C1636	m5C	C11	5'-GGACUGGGUGCAGCUGGACCGG-3'	((.((((......)))).)).. ( -4.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr17:4816715-4816736	PLD2	HGNC:9068	ENSG00000129219	GGACUGGGUGCAGCUGGACCGG
hsa_m5C_644	chr17	2417181	2417182	-	ENST00000263092	C4607	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038;31061524	15	chr17:2417173-2417187	METTL16	HGNC:28484	ENSG00000127804	GGAGGCUGAGGCAGG
hsa_m5C_645	chr17	2417175	2417176	-	ENST00000263092	C4613	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr17:2417173-2417187	METTL16	HGNC:28484	ENSG00000127804	GGAGGCUGAGGCAGG
hsa_m5C_646	chr19	1053481	1053482	+	ENST00000263094	C3601	m5C	C7	5'-GGCUGGCGGAGCUGAGG-3'	((((.....)))).... ( -3.60)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr19:1053476-1053492	ABCA7	HGNC:37	ENSG00000064687	GGCUGGCGGAGCUGAGG
hsa_m5C_647	chr19	1043784	1043785	+	ENST00000263094	C1218	m5C	C27	5'-GGGAUGUCCGGGAGGUGUGGGAGAUGCUGGG-3'	((.((.(((..........))).)).))... ( -7.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	31	chr19:1043759-1043789	ABCA7	HGNC:37	ENSG00000064687	GGGAUGUCCGGGAGGUGUGGGAGAUGCUGGG
hsa_m5C_648	chr19	57191545	57191546	+	ENST00000263095	C47	m5C	C3	5'-GGCCCCGGUCGGGG-3'	..((((....)))) ( -6.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	14	chr19:57191544-57191557	ZNF264	HGNC:13057	ENSG00000083844	GGCCCCGGUCGGGG
hsa_m5C_649	chr19	57191546	57191547	+	ENST00000263095	C48	m5C	C4	5'-GGCCCCGGUCGGGG-3'	..((((....)))) ( -6.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	14	chr19:57191544-57191557	ZNF264	HGNC:13057	ENSG00000083844	GGCCCCGGUCGGGG
hsa_m5C_650	chr19	57191547	57191548	+	ENST00000263095	C49	m5C	C5	5'-GGCCCCGGUCGGGG-3'	..((((....)))) ( -6.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	14	chr19:57191544-57191557	ZNF264	HGNC:13057	ENSG00000083844	GGCCCCGGUCGGGG
hsa_m5C_651	chr19	57191548	57191549	+	ENST00000263095	C50	m5C	C6	5'-GGCCCCGGUCGGGG-3'	..((((....)))) ( -6.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	14	chr19:57191544-57191557	ZNF264	HGNC:13057	ENSG00000083844	GGCCCCGGUCGGGG
hsa_m5C_652	chr22	19977525	19977526	-	ENST00000263207	C2066	m5C	C8	5'-GGAGGUGCCCGGGGCCGACAGGUACCAGG-3'	...((((((((....))...))))))... ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr22:19977505-19977533	ARVCF	HGNC:728	ENSG00000099889	GGAGGUGCCCGGGGCCGACAGGUACCAGG
hsa_m5C_653	chr22	19977524	19977525	-	ENST00000263207	C2067	m5C	C9	5'-GGAGGUGCCCGGGGCCGACAGGUACCAGG-3'	...((((((((....))...))))))... ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr22:19977505-19977533	ARVCF	HGNC:728	ENSG00000099889	GGAGGUGCCCGGGGCCGACAGGUACCAGG
hsa_m5C_654	chr22	19977523	19977524	-	ENST00000263207	C2068	m5C	C10	5'-GGAGGUGCCCGGGGCCGACAGGUACCAGG-3'	...((((((((....))...))))))... ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr22:19977505-19977533	ARVCF	HGNC:728	ENSG00000099889	GGAGGUGCCCGGGGCCGACAGGUACCAGG
hsa_m5C_655	chr22	19977518	19977519	-	ENST00000263207	C2073	m5C	C15	5'-GGAGGUGCCCGGGGCCGACAGGUACCAGG-3'	...((((((((....))...))))))... ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr22:19977505-19977533	ARVCF	HGNC:728	ENSG00000099889	GGAGGUGCCCGGGGCCGACAGGUACCAGG
hsa_m5C_656	chr22	19977517	19977518	-	ENST00000263207	C2074	m5C	C16	5'-GGAGGUGCCCGGGGCCGACAGGUACCAGG-3'	...((((((((....))...))))))... ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr22:19977505-19977533	ARVCF	HGNC:728	ENSG00000099889	GGAGGUGCCCGGGGCCGACAGGUACCAGG
hsa_m5C_657	chr22	42870057	42870058	-	ENST00000263246	C2966	m5C	C6	5'-GGGGGCCACGCGGGCCGGCGGGGGUGGGGGGAACGUGGGGG-3'	.....(((((....((.((....)).)).....)))))... (-13.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;RNAfold:(High)	m6A-Atlas database	28418038	41	chr22:42870023-42870063	PACSIN2	HGNC:8571	ENSG00000100266	GGGGGCCACGCGGGCCGGCGGGGGUGGGGGGAACGUGGGGG
hsa_m5C_658	chr22	42870056	42870057	-	ENST00000263246	C2967	m5C	C7	5'-GGGGGCCACGCGGGCCGGCGGGGGUGGGGGGAACGUGGGGG-3'	.....(((((....((.((....)).)).....)))))... (-13.40)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database	28418038	41	chr22:42870023-42870063	PACSIN2	HGNC:8571	ENSG00000100266	GGGGGCCACGCGGGCCGGCGGGGGUGGGGGGAACGUGGGGG
hsa_m5C_659	chr22	41151953	41151954	+	ENST00000263253	C3352	m5C	C6	5'-GGAGGCCAAAAUGGAAGUGG-3'	.....(((...)))...... ( -0.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr22:41151949-41151968	EP300	HGNC:3373	ENSG00000100393	GGAGGCCAAAAUGGAAGUGG
hsa_m5C_660	chr22	41599811	41599812	-	ENST00000263256	C1996	m5C	C6	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	15	chr22:41599803-41599817	DESI1	HGNC:24577	ENSG00000100418	GGAGGCCGAGGCAGG
hsa_m5C_661	chr22	41599810	41599811	-	ENST00000263256	C1997	m5C	C7	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	15	chr22:41599803-41599817	DESI1	HGNC:24577	ENSG00000100418	GGAGGCCGAGGCAGG
hsa_m5C_662	chr22	41599677	41599678	-	ENST00000263256	C2130	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr22:41599669-41599683	DESI1	HGNC:24577	ENSG00000100418	GGAGGCUGAGGCAGG
hsa_m5C_663	chr22	41599671	41599672	-	ENST00000263256	C2136	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr22:41599669-41599683	DESI1	HGNC:24577	ENSG00000100418	GGAGGCUGAGGCAGG
hsa_m5C_664	chr19	48443159	48443160	+	ENST00000263269	C3740	m5C	C18	5'-GGGCCAGGCGCGGGCGGCGCGGGGGGCACGGGGG-3'	..(((..((((.....))))....)))....... (-12.60)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database	28418038	34	chr19:48443143-48443176	GRIN2D	HGNC:4588	ENSG00000105464	GGGCCAGGCGCGGGCGGCGCGGGGGGCACGGGGG
hsa_m5C_665	chr19	48443161	48443162	+	ENST00000263269	C3742	m5C	C20	5'-GGGCCAGGCGCGGGCGGCGCGGGGGGCACGGGGG-3'	..(((..((((.....))))....)))....... (-12.60)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database	28418038	34	chr19:48443143-48443176	GRIN2D	HGNC:4588	ENSG00000105464	GGGCCAGGCGCGGGCGGCGCGGGGGGCACGGGGG
hsa_m5C_666	chr19	48443168	48443169	+	ENST00000263269	C3749	m5C	C27	5'-GGGCCAGGCGCGGGCGGCGCGGGGGGCACGGGGG-3'	..(((..((((.....))))....)))....... (-12.60)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;RMVar database	28418038	34	chr19:48443143-48443176	GRIN2D	HGNC:4588	ENSG00000105464	GGGCCAGGCGCGGGCGGCGCGGGGGGCACGGGGG
hsa_m5C_667	chr19	48443170	48443171	+	ENST00000263269	C3751	m5C	C29	5'-GGGCCAGGCGCGGGCGGCGCGGGGGGCACGGGGG-3'	..(((..((((.....))))....)))....... (-12.60)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	28418038	34	chr19:48443143-48443176	GRIN2D	HGNC:4588	ENSG00000105464	GGGCCAGGCGCGGGCGGCGCGGGGGGCACGGGGG
hsa_m5C_668	chr19	48443890	48443891	+	ENST00000263269	C4471	m5C	C19	5'-GGGGCGGGGACCUGGGCACCCGCAGGGG-3'	...(((((..........)))))..... ( -9.80)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4hunter score>=1.2:(Medium)	RMVar database	28418038	28	chr19:48443873-48443900	GRIN2D	HGNC:4588	ENSG00000105464	GGGGCGGGGACCUGGGCACCCGCAGGGG
hsa_m5C_669	chr19	45550861	45550862	-	ENST00000263275	C3230	m5C	C8	5'-GGAUCUGCCACUGAAGCGGGAGGGGGUGGG-3'	....(((((.((........))..))))). ( -6.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	30	chr19:45550840-45550869	OPA3	HGNC:8142	ENSG00000125741	GGAUCUGCCACUGAAGCGGGAGGGGGUGGG
hsa_m5C_670	chr19	45549057	45549058	-	ENST00000263275	C5034	m5C	C7	5'-GGGAGGCCAGGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr19:45549050-45549064	OPA3	HGNC:8142	ENSG00000125741	GGGAGGCCAGGGUGG
hsa_m5C_671	chr19	45549056	45549057	-	ENST00000263275	C5035	m5C	C8	5'-GGGAGGCCAGGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr19:45549050-45549064	OPA3	HGNC:8142	ENSG00000125741	GGGAGGCCAGGGUGG
hsa_m5C_672	chr19	45552928	45552929	-	ENST00000263275	C1163	m5C	C7	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr19:45552921-45552935	OPA3	HGNC:8142	ENSG00000125741	GGGAGGCCGAGGCGG
hsa_m5C_673	chr19	45552927	45552928	-	ENST00000263275	C1164	m5C	C8	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr19:45552921-45552935	OPA3	HGNC:8142	ENSG00000125741	GGGAGGCCGAGGCGG
hsa_m5C_674	chr19	45552922	45552923	-	ENST00000263275	C1169	m5C	C13	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr19:45552921-45552935	OPA3	HGNC:8142	ENSG00000125741	GGGAGGCCGAGGCGG
hsa_m5C_675	chr19	48834342	48834343	-	ENST00000263278	C223	m5C	C9	5'-GGGCCGGGCCCUGGAGCAGG-3'	((((...))))......... ( -5.80)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	20	chr19:48834332-48834351	HSD17B14	HGNC:23238	ENSG00000087076	GGGCCGGGCCCUGGAGCAGG
hsa_m5C_676	chr19	14042571	14042572	+	ENST00000263379	C765	m5C	C13	5'-GGAUUUGUGGGGCGAGUGG-3'	..((((((...)))))).. ( -2.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	19	chr19:14042560-14042578	IL27RA	HGNC:17290	ENSG00000104998	GGAUUUGUGGGGCGAGUGG
hsa_m5C_677	chr11	36273599	36273600	-	ENST00000263401	C1641	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr11:36273591-36273605	COMMD9	HGNC:25014	ENSG00000110442	GGAGGCUGAGGCAGG
hsa_m5C_678	chr11	36273593	36273594	-	ENST00000263401	C1647	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr11:36273591-36273605	COMMD9	HGNC:25014	ENSG00000110442	GGAGGCUGAGGCAGG
hsa_m5C_679	chr19	55092850	55092851	-	ENST00000263433	C1937	m5C	C4	5'-GGGCAGGGUCCGGGACCGCAGGCGGCCAGGG-3'	((((...)))).((.(((....))))).... ( -9.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	31	chr19:55092824-55092854	PPP1R12C	HGNC:14947	ENSG00000125503	GGGCAGGGUCCGGGACCGCAGGCGGCCAGGG
hsa_m5C_680	chr19	55092844	55092845	-	ENST00000263433	C1943	m5C	C10	5'-GGGCAGGGUCCGGGACCGCAGGCGGCCAGGG-3'	((((...)))).((.(((....))))).... ( -9.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	31	chr19:55092824-55092854	PPP1R12C	HGNC:14947	ENSG00000125503	GGGCAGGGUCCGGGACCGCAGGCGGCCAGGG
hsa_m5C_681	chr19	55092837	55092838	-	ENST00000263433	C1950	m5C	C17	5'-GGGCAGGGUCCGGGACCGCAGGCGGCCAGGG-3'	((((...)))).((.(((....))))).... ( -9.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	31	chr19:55092824-55092854	PPP1R12C	HGNC:14947	ENSG00000125503	GGGCAGGGUCCGGGACCGCAGGCGGCCAGGG
hsa_m5C_682	chr10	69171359	69171360	+	ENST00000263559	C1175	m5C	C9	5'-GGAGGGGGCGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	11	chr10:69171352-69171362	VPS26A	HGNC:12711	ENSG00000122958	GGAGGGGGCGG
hsa_m5C_683	chr19	971935	971936	+	ENST00000263620	C1945	m5C	C6	5'-GGAGGCGGCGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	11	chr19:971931-971941	ARID3A	HGNC:3031	ENSG00000116017	GGAGGCGGCGG
hsa_m5C_684	chr19	971938	971939	+	ENST00000263620	C1948	m5C	C9	5'-GGAGGCGGCGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	11	chr19:971931-971941	ARID3A	HGNC:3031	ENSG00000116017	GGAGGCGGCGG
hsa_m5C_685	chr19	926057	926058	+	ENST00000263620	C24	m5C	C12	5'-GGCUGGCGGCUCG^G-3'	((((...))))... ( -1.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	14	chr19:926047-926059;929262-929262	ARID3A	HGNC:3031	ENSG00000116017	GGCUGGCGGCUCGG
hsa_m5C_686	chr2	55244173	55244174	-	ENST00000263629	C1465	m5C	C17	5'-GGCUCUGUUCUGGUUGCUGGAAAAUGUUGG-3'	(((....((((((...))))))...))).. ( -3.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr2:55244161-55244190	MTIF2	HGNC:7441	ENSG00000085760	GGCUCUGUUCUGGUUGCUGGAAAAUGUUGG
hsa_m5C_687	chr11	73308712	73308713	+	ENST00000263674	C438	m5C	C11	5'-GGAGCGGCGGCCCCGG-3'	((.((....)).)).. ( -4.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr11:73308703-73308718	ARHGEF17	HGNC:21726	ENSG00000110237	GGAGCGGCGGCCCCGG
hsa_m5C_688	chr11	73308713	73308714	+	ENST00000263674	C439	m5C	C12	5'-GGAGCGGCGGCCCCGG-3'	((.((....)).)).. ( -4.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr11:73308703-73308718	ARHGEF17	HGNC:21726	ENSG00000110237	GGAGCGGCGGCCCCGG
hsa_m5C_689	chr11	73308969	73308970	+	ENST00000263674	C695	m5C	C6	5'-GGCCGCGGAAGAAGCGGCCGAGG-3'	((((((.......)))))).... (-13.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr11:73308965-73308987	ARHGEF17	HGNC:21726	ENSG00000110237	GGCCGCGGAAGAAGCGGCCGAGG
hsa_m5C_690	chr11	73308978	73308979	+	ENST00000263674	C704	m5C	C15	5'-GGCCGCGGAAGAAGCGGCCGAGG-3'	((((((.......)))))).... (-13.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr11:73308965-73308987	ARHGEF17	HGNC:21726	ENSG00000110237	GGCCGCGGAAGAAGCGGCCGAGG
hsa_m5C_691	chr11	73308981	73308982	+	ENST00000263674	C707	m5C	C18	5'-GGCCGCGGAAGAAGCGGCCGAGG-3'	((((((.......)))))).... (-13.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr11:73308965-73308987	ARHGEF17	HGNC:21726	ENSG00000110237	GGCCGCGGAAGAAGCGGCCGAGG
hsa_m5C_692	chr1	29230854	29230855	-	ENST00000263702	C80	m5C	C9	5'-GGCAGUGGCGGGG-3'	.((....)).... ( -0.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	13	chr1:29230851-29230863	MECR	HGNC:19691	ENSG00000116353	GGCAGUGGCGGGG
hsa_m5C_693	chr1	179075090	179075091	+	ENST00000263733	C4515	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr1:179075086-179075100	FAM20B	HGNC:23017	ENSG00000116199	GGAGGCUGAGGCAGG
hsa_m5C_694	chr1	179075096	179075097	+	ENST00000263733	C4521	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr1:179075086-179075100	FAM20B	HGNC:23017	ENSG00000116199	GGAGGCUGAGGCAGG
hsa_m5C_695	chr2	46380319	46380320	+	ENST00000263734	C2153	m5C	C5	5'-GGAGCGGCUCUUGGCGG-3'	...((........)).. ( -1.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr2:46380316-46380332	EPAS1	HGNC:3374	ENSG00000116016	GGAGCGGCUCUUGGCGG
hsa_m5C_696	chr2	46385557	46385558	+	ENST00000263734	C4016	m5C	C9	5'-GGCCUGUACGGACACUGUGGAAGG-3'	..(((.(((((...)))))..))) ( -4.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	24	chr2:46385550-46385573	EPAS1	HGNC:3374	ENSG00000116016	GGCCUGUACGGACACUGUGGAAGG
hsa_m5C_697	chr2	46385561	46385562	+	ENST00000263734	C4020	m5C	C13	5'-GGCCUGUACGGACACUGUGGAAGG-3'	..(((.(((((...)))))..))) ( -4.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	24	chr2:46385550-46385573	EPAS1	HGNC:3374	ENSG00000116016	GGCCUGUACGGACACUGUGGAAGG
hsa_m5C_698	chr2	46385563	46385564	+	ENST00000263734	C4022	m5C	C15	5'-GGCCUGUACGGACACUGUGGAAGG-3'	..(((.(((((...)))))..))) ( -4.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	24	chr2:46385550-46385573	EPAS1	HGNC:3374	ENSG00000116016	GGCCUGUACGGACACUGUGGAAGG
hsa_m5C_699	chr2	46385744	46385745	+	ENST00000263734	C4203	m5C	C6	5'-GGGGUCGGGGGGUGGGGCGGGG-3'	...(((.........))).... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	22	chr2:46385740-46385761	EPAS1	HGNC:3374	ENSG00000116016	GGGGUCGGGGGGUGGGGCGGGG
hsa_m5C_700	chr2	46384514	46384515	+	ENST00000263734	C2973	m5C	C15	5'-GGUGUCAG^GCAUGGCAAGCCGG-3'	(((((((....))))..))).. ( -5.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr2:46382591-46382598;46384509-46384522	EPAS1	HGNC:3374	ENSG00000116016	GGUGUCAGGCAUGGCAAGCCGG
hsa_m5C_701	chr15	39934214	39934215	+	ENST00000263791	C101	m5C	C14	5'-GGGGGCCGUGGGGCCCCCGGGCGCGGCCGGG-3'	(((((((....))))))).(((...)))... (-21.30)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	31	chr15:39934202-39934232	EIF2AK4	HGNC:19687	ENSG00000128829	GGGGGCCGUGGGGCCCCCGGGCGCGGCCGGG
hsa_m5C_702	chr15	39934215	39934216	+	ENST00000263791	C102	m5C	C15	5'-GGGGGCCGUGGGGCCCCCGGGCGCGGCCGGG-3'	(((((((....))))))).(((...)))... (-21.30)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	31	chr15:39934202-39934232	EIF2AK4	HGNC:19687	ENSG00000128829	GGGGGCCGUGGGGCCCCCGGGCGCGGCCGGG
hsa_m5C_703	chr15	39934216	39934217	+	ENST00000263791	C103	m5C	C16	5'-GGGGGCCGUGGGGCCCCCGGGCGCGGCCGGG-3'	(((((((....))))))).(((...)))... (-21.30)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	31	chr15:39934202-39934232	EIF2AK4	HGNC:19687	ENSG00000128829	GGGGGCCGUGGGGCCCCCGGGCGCGGCCGGG
hsa_m5C_704	chr15	39934217	39934218	+	ENST00000263791	C104	m5C	C17	5'-GGGGGCCGUGGGGCCCCCGGGCGCGGCCGGG-3'	(((((((....))))))).(((...)))... (-21.30)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	31	chr15:39934202-39934232	EIF2AK4	HGNC:19687	ENSG00000128829	GGGGGCCGUGGGGCCCCCGGGCGCGGCCGGG
hsa_m5C_705	chr15	39934218	39934219	+	ENST00000263791	C105	m5C	C18	5'-GGGGGCCGUGGGGCCCCCGGGCGCGGCCGGG-3'	(((((((....))))))).(((...)))... (-21.30)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	31	chr15:39934202-39934232	EIF2AK4	HGNC:19687	ENSG00000128829	GGGGGCCGUGGGGCCCCCGGGCGCGGCCGGG
hsa_m5C_706	chr15	39934206	39934207	+	ENST00000263791	C93	m5C	C6	5'-GGGGGCCGUGGGGCCCCCGGGCGCGGCCGGG-3'	(((((((....))))))).(((...)))... (-21.30)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	31	chr15:39934202-39934232	EIF2AK4	HGNC:19687	ENSG00000128829	GGGGGCCGUGGGGCCCCCGGGCGCGGCCGGG
hsa_m5C_707	chr15	39934207	39934208	+	ENST00000263791	C94	m5C	C7	5'-GGGGGCCGUGGGGCCCCCGGGCGCGGCCGGG-3'	(((((((....))))))).(((...)))... (-21.30)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	31	chr15:39934202-39934232	EIF2AK4	HGNC:19687	ENSG00000128829	GGGGGCCGUGGGGCCCCCGGGCGCGGCCGGG
hsa_m5C_708	chr15	42415984	42415985	-	ENST00000263805	C7298	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr15:42415976-42415990	ZNF106	HGNC:12886	ENSG00000103994	GGAGGCUGAGGCAGG
hsa_m5C_709	chr2	86021894	86021895	-	ENST00000263857	C10801	m5C	C4	5'-GGACCUGGUUUAUUCACAGGCUCAGG-3'	...((((((((......)))).)))) ( -6.00)	loop	mRNA	T24;HeLa,T24	m5C-RIP-seq:(Medium),RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chr2:86021873-86021898	POLR1A	HGNC:17264	ENSG00000068654	GGACCUGGUUUAUUCACAGGCUCAGG
hsa_m5C_710	chr2	86024001	86024002	-	ENST00000263857	C8694	m5C	C6	5'-GGAGGCCGAGGCGG-3'	....((....)).. ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	14	chr2:86023994-86024007	POLR1A	HGNC:17264	ENSG00000068654	GGAGGCCGAGGCGG
hsa_m5C_711	chr2	86023995	86023996	-	ENST00000263857	C8700	m5C	C12	5'-GGAGGCCGAGGCGG-3'	....((....)).. ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	14	chr2:86023994-86024007	POLR1A	HGNC:17264	ENSG00000068654	GGAGGCCGAGGCGG
hsa_m5C_712	chr2	86023867	86023868	-	ENST00000263857	C8828	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Muscle	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr2:86023859-86023873	POLR1A	HGNC:17264	ENSG00000068654	GGAGGCUGAGGCAGG
hsa_m5C_713	chr2	86023861	86023862	-	ENST00000263857	C8834	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Muscle	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr2:86023859-86023873	POLR1A	HGNC:17264	ENSG00000068654	GGAGGCUGAGGCAGG
hsa_m5C_714	chr2	86027470	86027471	-	ENST00000263857	C5225	m5C	C9	5'-GGGAAGGUCGUCAGGGGCGGG-3'	.......(((((...))))). ( -2.80)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	21	chr2:86027459-86027479	POLR1A	HGNC:17264	ENSG00000068654	GGGAAGGUCGUCAGGGGCGGG
hsa_m5C_715	chr11	119309222	119309223	-	ENST00000264036	C2633	m5C	C8	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr11:119309216-119309230	MCAM	HGNC:6934	ENSG00000076706	GGGAGGCCGAGGCGG
hsa_m5C_716	chr11	119309217	119309218	-	ENST00000264036	C2638	m5C	C13	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr11:119309216-119309230	MCAM	HGNC:6934	ENSG00000076706	GGGAGGCCGAGGCGG
hsa_m5C_717	chr11	119312370	119312371	-	ENST00000264036	C948	m5C	C13	5'-GGGGUCCUGGUGCUGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr11:119312368-119312383	MCAM	HGNC:6934	ENSG00000076706	GGGGUCCUGGUGCUGG
hsa_m5C_718	chr2	233448362	233448363	+	ENST00000264057	C1627	m5C	C16	5'-GGAGGAGUCAGAGGUCAUGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr2:233448348-233448367	DGKD	HGNC:2851	ENSG00000077044	GGAGGAGUCAGAGGUCAUGG
hsa_m5C_719	chr2	233354525	233354526	+	ENST00000264057	C33	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr2:233354521-233354531	DGKD	HGNC:2851	ENSG00000077044	GGCGGCGGCGG
hsa_m5C_720	chr2	233354528	233354529	+	ENST00000264057	C36	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr2:233354521-233354531	DGKD	HGNC:2851	ENSG00000077044	GGCGGCGGCGG
hsa_m5C_721	chr19	7533945	7533946	+	ENST00000264079	C2021	m5C	C5	5'-GGGGCGGGGAGACUGGGUGGGG-3'	....(((.....)))....... ( -1.70)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	22	chr19:7533942-7533963	MCOLN1	HGNC:13356	ENSG00000090674	GGGGCGGGGAGACUGGGUGGGG
hsa_m5C_722	chr1	183235676	183235677	+	ENST00000264144	C2492	m5C	C6	5'-GGAGUCGGAAGCGGAAGCGG-3'	..........((....)).. ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr1:183235672-183235691	LAMC2	HGNC:6493	ENSG00000058085	GGAGUCGGAAGCGGAAGCGG
hsa_m5C_723	chr1	236042264	236042265	-	ENST00000264187	C791	m5C	C15	5'-GGGCAGCAGGGUGUCUGGGUGUUUGAGAUUGGG-3'	(((((......)))))................. ( -4.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	33	chr1:236042247-236042279	NID1	HGNC:7821	ENSG00000116962	GGGCAGCAGGGUGUCUGGGUGUUUGAGAUUGGG
hsa_m5C_724	chr2	100569581	100569582	+	ENST00000264254	C304	m5C	C3	5'-GGCGGAGACUGGCUGAGUGG-3'	(((........)))...... ( -2.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr2:100569580-100569599	PDCL3	HGNC:28860	ENSG00000115539	GGCGGAGACUGGCUGAGUGG
hsa_m5C_725	chr4	48341973	48341974	+	ENST00000264313	C446	m5C	C11	5'-GGGCGGCGGGCCCGGGUCGGG-3'	((((.....))))........ ( -8.40)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	21	chr4:48341964-48341984	SLAIN2	HGNC:29282	ENSG00000109171	GGGCGGCGGGCCCGGGUCGGG
hsa_m5C_726	chr4	48341974	48341975	+	ENST00000264313	C447	m5C	C12	5'-GGGCGGCGGGCCCGGGUCGGG-3'	((((.....))))........ ( -8.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	21	chr4:48341964-48341984	SLAIN2	HGNC:29282	ENSG00000109171	GGGCGGCGGGCCCGGGUCGGG
hsa_m5C_727	chr4	48341975	48341976	+	ENST00000264313	C448	m5C	C13	5'-GGGCGGCGGGCCCGGGUCGGG-3'	((((.....))))........ ( -8.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	21	chr4:48341964-48341984	SLAIN2	HGNC:29282	ENSG00000109171	GGGCGGCGGGCCCGGGUCGGG
hsa_m5C_728	chr19	55407620	55407621	-	ENST00000264552	C168	m5C	C10	5'-GGAAGGGGGCCGG-3'	((.......)).. ( -0.30)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold;rG4-seq:(High)	RMBase database;m6A-Atlas database	28418038;30872485	13	chr19:55407618-55407630	UBE2S	HGNC:17895	ENSG00000108106	GGAAGGGGGCCGG
hsa_m5C_729	chr19	55407619	55407620	-	ENST00000264552	C169	m5C	C11	5'-GGAAGGGGGCCGG-3'	((.......)).. ( -0.30)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	13	chr19:55407618-55407630	UBE2S	HGNC:17895	ENSG00000108106	GGAAGGGGGCCGG
hsa_m5C_730	chr19	55401623	55401624	-	ENST00000264552	C680	m5C	C16	5'-GGGGGCGCCGGCGGGCCCAGCGGCAGGGCCGAAGCCGGUCGGG-3'	.....(((((((.(((((.......)))))...))))).)).. (-22.30)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	43	chr19:55401597-55401639	UBE2S	HGNC:17895	ENSG00000108106	GGGGGCGCCGGCGGGCCCAGCGGCAGGGCCGAAGCCGGUCGGG
hsa_m5C_731	chr19	55401622	55401623	-	ENST00000264552	C681	m5C	C17	5'-GGGGGCGCCGGCGGGCCCAGCGGCAGGGCCGAAGCCGGUCGGG-3'	.....(((((((.(((((.......)))))...))))).)).. (-22.30)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	43	chr19:55401597-55401639	UBE2S	HGNC:17895	ENSG00000108106	GGGGGCGCCGGCGGGCCCAGCGGCAGGGCCGAAGCCGGUCGGG
hsa_m5C_732	chr19	55401621	55401622	-	ENST00000264552	C682	m5C	C18	5'-GGGGGCGCCGGCGGGCCCAGCGGCAGGGCCGAAGCCGGUCGGG-3'	.....(((((((.(((((.......)))))...))))).)).. (-22.30)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	43	chr19:55401597-55401639	UBE2S	HGNC:17895	ENSG00000108106	GGGGGCGCCGGCGGGCCCAGCGGCAGGGCCGAAGCCGGUCGGG
hsa_m5C_733	chr19	55401610	55401611	-	ENST00000264552	C693	m5C	C29	5'-GGGGGCGCCGGCGGGCCCAGCGGCAGGGCCGAAGCCGGUCGGG-3'	.....(((((((.(((((.......)))))...))))).)).. (-22.30)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	43	chr19:55401597-55401639	UBE2S	HGNC:17895	ENSG00000108106	GGGGGCGCCGGCGGGCCCAGCGGCAGGGCCGAAGCCGGUCGGG
hsa_m5C_734	chr17	39981109	39981110	+	ENST00000264639	C304	m5C	C21	5'-GGCAGCGACGGGUGGCGGGUCGACGGGG-3'	(((.((........))..)))....... ( -4.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	28	chr17:39981090-39981117	PSMD3	HGNC:9560	ENSG00000108344	GGCAGCGACGGGUGGCGGGUCGACGGGG
hsa_m5C_735	chr5	6599909	6599910	-	ENST00000264670	C2385	m5C	C21	5'-GGUGAGCAGGCCCAAGGCAGCGGG-3'	.....((..(((...))).))... ( -5.00)	loop	mRNA	HeLa,rescue;HeLa,With in vitro transcribed m5C spike-ins;HeLa,With in vitro transcribed non-m5C spike-ins;293T;HeLa,siControl;HeLa,rip antibody: ALYREF;HeLa,T24;HeLa	UBS-seq:(High);m5C-RIP-seq:(Medium),RNA-BisSeq:(High);RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	30872485;28418038;31061524;38168991	24	chr5:6599907-6599930	NSUN2	HGNC:25994	ENSG00000037474	GGUGAGCAGGCCCAAGGCAGCGGG
hsa_m5C_736	chr4	185425920	185425921	-	ENST00000264689	C44	m5C	C9	5'-GGGCCGGCCCCCGGAACUUUUGG-3'	...((((...))))......... ( -4.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr4:185425907-185425929	UFSP2	HGNC:25640	ENSG00000109775	GGGCCGGCCCCCGGAACUUUUGG
hsa_m5C_737	chr2	27494976	27494977	-	ENST00000264703	C224	m5C	C11	5'-GGGCCCGCGCCGGGAUGGGGUAGGGG-3'	...(((((.((.....)).)).))). ( -9.40)	bulge	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4hunter score>=1.2:(Medium)	m6A-Atlas database	28418038	26	chr2:27494962-27494987	FNDC4	HGNC:20239	ENSG00000115226	GGGCCCGCGCCGGGAUGGGGUAGGGG
hsa_m5C_738	chr2	27236415	27236416	+	ENST00000264705	C4390	m5C	C13	5'-GGAGCUGGGGGCCGG-3'	....((((...)))) ( -1.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr2:27236404-27236418	CAD	HGNC:1424	ENSG00000084774	GGAGCUGGGGGCCGG
hsa_m5C_739	chr2	27226582	27226583	+	ENST00000264705	C2273	m5C	C12	5'-GGCCAGUAAGGCCACAGGUUAUCCACUGG-3'	((((.....)))).(((........))). (-10.30)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr2:27226572-27226600	CAD	HGNC:1424	ENSG00000084774	GGCCAGUAAGGCCACAGGUUAUCCACUGG
hsa_m5C_740	chr2	26134990	26134991	+	ENST00000264710	C1098	m5C	C9	5'-GGAGGAGGCGUGACAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	17	chr2:26134983-26134999	RAB10	HGNC:9759	ENSG00000084733	GGAGGAGGCGUGACAGG
hsa_m5C_741	chr2	26134995	26134996	+	ENST00000264710	C1103	m5C	C14	5'-GGAGGAGGCGUGACAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	17	chr2:26134983-26134999	RAB10	HGNC:9759	ENSG00000084733	GGAGGAGGCGUGACAGG
hsa_m5C_742	chr2	25982468	25982469	-	ENST00000264712	C29	m5C	C3	5'-GGCGGCGGGGAAGGCGGAGGCAGAGG-3'	.((..((.......))...))..... ( -2.20)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	26	chr2:25982446-25982471	KIF3C	HGNC:6321	ENSG00000084731	GGCGGCGGGGAAGGCGGAGGCAGAGG
hsa_m5C_743	chr2	28393618	28393619	+	ENST00000264716	C762	m5C	C3	5'-GGCGCGGCCGGCGG-3'	..(((.....))). ( -3.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr2:28393617-28393630	FOSL2	HGNC:3798	ENSG00000075426	GGCGCGGCCGGCGG
hsa_m5C_744	chr2	28393620	28393621	+	ENST00000264716	C764	m5C	C5	5'-GGCGCGGCCGGCGG-3'	..(((.....))). ( -3.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr2:28393617-28393630	FOSL2	HGNC:3798	ENSG00000075426	GGCGCGGCCGGCGG
hsa_m5C_745	chr2	28393623	28393624	+	ENST00000264716	C767	m5C	C8	5'-GGCGCGGCCGGCGG-3'	..(((.....))). ( -3.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr2:28393617-28393630	FOSL2	HGNC:3798	ENSG00000075426	GGCGCGGCCGGCGG
hsa_m5C_746	chr2	28393624	28393625	+	ENST00000264716	C768	m5C	C9	5'-GGCGCGGCCGGCGG-3'	..(((.....))). ( -3.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr2:28393617-28393630	FOSL2	HGNC:3798	ENSG00000075426	GGCGCGGCCGGCGG
hsa_m5C_747	chr2	28393183	28393184	+	ENST00000264716	C327	m5C	C4	5'-GGGCGGCGAGUCGGCCACGGG-3'	((.((......)).))..... ( -5.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	21	chr2:28393181-28393201	FOSL2	HGNC:3798	ENSG00000075426	GGGCGGCGAGUCGGCCACGGG
hsa_m5C_748	chr19	10003707	10003708	-	ENST00000264828	C825	m5C	C26	5'-GGCACCGGCAGCCACAGUG^GCUCCCCAGG-3'	((....((.(((((...)))))))))... ( -8.30)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	29	chr19:10003705-10003714;10004041-10004059	COL5A3	HGNC:14864	ENSG00000080573	GGCACCGGCAGCCACAGUGGCUCCCCAGG
hsa_m5C_749	chr4	26584287	26584288	+	ENST00000264866	C205	m5C	C12	5'-GGAACGGCAGGCCUGG-3'	.....((....))... ( -0.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr4:26584277-26584292	TBC1D19	HGNC:25624	ENSG00000109680	GGAACGGCAGGCCUGG
hsa_m5C_750	chr5	78778147	78778148	-	ENST00000264914	C3913	m5C	C18	5'-GGGCUGGGUGUAGGUAGCCGUUGG-3'	.(((((........)))))..... ( -7.00)	bulge	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	24	chr5:78778142-78778165	ARSB	HGNC:714	ENSG00000113273	GGGCUGGGUGUAGGUAGCCGUUGG
hsa_m5C_751	chr5	1052298	1052299	-	ENST00000264930	C3385	m5C	C14	5'-GGGCAGCCUGGGCCUGGGCUUGGCCCAGGG-3'	......((((((((.......)))))))). (-18.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr5:1052283-1052312	SLC12A7	HGNC:10915	ENSG00000113504	GGGCAGCCUGGGCCUGGGCUUGGCCCAGGG
hsa_m5C_752	chr5	1052287	1052288	-	ENST00000264930	C3396	m5C	C25	5'-GGGCAGCCUGGGCCUGGGCUUGGCCCAGGG-3'	......((((((((.......)))))))). (-18.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr5:1052283-1052312	SLC12A7	HGNC:10915	ENSG00000113504	GGGCAGCCUGGGCCUGGGCUUGGCCCAGGG
hsa_m5C_753	chr5	1052286	1052287	-	ENST00000264930	C3397	m5C	C26	5'-GGGCAGCCUGGGCCUGGGCUUGGCCCAGGG-3'	......((((((((.......)))))))). (-18.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr5:1052283-1052312	SLC12A7	HGNC:10915	ENSG00000113504	GGGCAGCCUGGGCCUGGGCUUGGCCCAGGG
hsa_m5C_754	chr3	127821716	127821717	-	ENST00000265052	C329	m5C	C5	5'-GGUACUGGAAACCCACAGGCACACCCAA^GG-3'	(((.(((........)))....)))..... ( -3.00)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr3:127781894-127781895;127821694-127821721	MGLL	HGNC:17038	ENSG00000074416	GGUACUGGAAACCCACAGGCACACCCAAGG
hsa_m5C_755	chr3	127604965	127604966	+	ENST00000265056	C539	m5C	C10	5'-GGAGGACGGCGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	30526041	14	chr3:127604957-127604970	MCM2	HGNC:6944	ENSG00000073111	GGAGGACGGCGAGG
hsa_m5C_756	chr5	173317517	173317518	-	ENST00000265087	C1459	m5C	C22	5'-GGGAGGUGAACCAGGGAGGGGCAGGGCAAGGCAGGG-3'	......((..((.....))..))............. ( -3.40)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	36	chr5:173317504-173317539	STC2	HGNC:11374	ENSG00000113739	GGGAGGUGAACCAGGGAGGGGCAGGGCAAGGCAGGG
hsa_m5C_757	chr5	33445381	33445382	+	ENST00000265112	C238	m5C	C5	5'-GGAUCUGGAGAUGGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	17	chr5:33445378-33445394	TARS1	HGNC:11572	ENSG00000113407	GGAUCUGGAGAUGGAGG
hsa_m5C_758	chr4	109433967	109433968	+	ENST00000265175	C154	m5C	C4	5'-GGGCCCGGGUGCGGGCCCGG-3'	(((((((....))))))).. (-17.30)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	20	chr4:109433965-109433984	SEC24B	HGNC:10704	ENSG00000138802	GGGCCCGGGUGCGGGCCCGG
hsa_m5C_759	chr4	109433968	109433969	+	ENST00000265175	C155	m5C	C5	5'-GGGCCCGGGUGCGGGCCCGG-3'	(((((((....))))))).. (-17.30)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	20	chr4:109433965-109433984	SEC24B	HGNC:10704	ENSG00000138802	GGGCCCGGGUGCGGGCCCGG
hsa_m5C_760	chr4	109433969	109433970	+	ENST00000265175	C156	m5C	C6	5'-GGGCCCGGGUGCGGGCCCGG-3'	(((((((....))))))).. (-17.30)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	20	chr4:109433965-109433984	SEC24B	HGNC:10704	ENSG00000138802	GGGCCCGGGUGCGGGCCCGG
hsa_m5C_761	chr4	109433979	109433980	+	ENST00000265175	C166	m5C	C16	5'-GGGCCCGGGUGCGGGCCCGG-3'	(((((((....))))))).. (-17.30)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	20	chr4:109433965-109433984	SEC24B	HGNC:10704	ENSG00000138802	GGGCCCGGGUGCGGGCCCGG
hsa_m5C_762	chr4	109433980	109433981	+	ENST00000265175	C167	m5C	C17	5'-GGGCCCGGGUGCGGGCCCGG-3'	(((((((....))))))).. (-17.30)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	20	chr4:109433965-109433984	SEC24B	HGNC:10704	ENSG00000138802	GGGCCCGGGUGCGGGCCCGG
hsa_m5C_763	chr4	109433981	109433982	+	ENST00000265175	C168	m5C	C18	5'-GGGCCCGGGUGCGGGCCCGG-3'	(((((((....))))))).. (-17.30)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	20	chr4:109433965-109433984	SEC24B	HGNC:10704	ENSG00000138802	GGGCCCGGGUGCGGGCCCGG
hsa_m5C_764	chr3	194641731	194641732	-	ENST00000265245	C2342	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr3:194641723-194641737	LSG1	HGNC:25652	ENSG00000041802	GGAGGCUGAGGCAGG
hsa_m5C_765	chr3	194641725	194641726	-	ENST00000265245	C2348	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr3:194641723-194641737	LSG1	HGNC:25652	ENSG00000041802	GGAGGCUGAGGCAGG
hsa_m5C_766	chr5	146203624	146203625	+	ENST00000265271	C21	m5C	C10	5'-GGCCCCGGCCGGGG-3'	..((((....)))) ( -6.00)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr5:146203616-146203629	RBM27	HGNC:29243	ENSG00000091009	GGCCCCGGCCGGGG
hsa_m5C_767	chr7	30771456	30771457	+	ENST00000265299	C41	m5C	C13	5'-GGUGCUGCGGCCCGGCGUGGG-3'	((.((....))))........ ( -5.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr7:30771445-30771465	MINDY4	HGNC:21916	ENSG00000106125	GGUGCUGCGGCCCGGCGUGGG
hsa_m5C_768	chr2	219216440	219216441	-	ENST00000265316	C1178	m5C	C6	5'-GGCACCUUGGAACUCUCUGGCCUGG-3'	(((....((((....)))))))... ( -2.90)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr2:219216422-219216446	ABCB6	HGNC:47	ENSG00000115657	GGCACCUUGGAACUCUCUGGCCUGG
hsa_m5C_769	chr5	135028338	135028339	-	ENST00000265340	C1732	m5C	C3	5'-GGCCGGGCCUGCGGACUGG-3'	(((((......))).)).. ( -4.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr5:135028323-135028341	PITX1	HGNC:9004	ENSG00000069011	GGCCGGGCCUGCGGACUGG
hsa_m5C_770	chr5	135028337	135028338	-	ENST00000265340	C1733	m5C	C4	5'-GGCCGGGCCUGCGGACUGG-3'	(((((......))).)).. ( -4.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr5:135028323-135028341	PITX1	HGNC:9004	ENSG00000069011	GGCCGGGCCUGCGGACUGG
hsa_m5C_771	chr5	135028333	135028334	-	ENST00000265340	C1737	m5C	C8	5'-GGCCGGGCCUGCGGACUGG-3'	(((((......))).)).. ( -4.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr5:135028323-135028341	PITX1	HGNC:9004	ENSG00000069011	GGCCGGGCCUGCGGACUGG
hsa_m5C_772	chr5	135034022	135034023	-	ENST00000265340	C206	m5C	C16	5'-GGGCGGUCCAUGGGGCGG-3'	.....((((...)))).. ( -3.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	18	chr5:135034021-135034038	PITX1	HGNC:9004	ENSG00000069011	GGGCGGUCCAUGGGGCGG
hsa_m5C_773	chr5	132878207	132878208	-	ENST00000265343	C6723	m5C	C14	5'-GGGCCAGACUGGGCUGGGCUGUGGG-3'	((.((((......)))).))..... ( -8.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	25	chr5:132878197-132878221	AFF4	HGNC:17869	ENSG00000072364	GGGCCAGACUGGGCUGGGCUGUGGG
hsa_m5C_774	chr5	132878202	132878203	-	ENST00000265343	C6728	m5C	C19	5'-GGGCCAGACUGGGCUGGGCUGUGGG-3'	((.((((......)))).))..... ( -8.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	25	chr5:132878197-132878221	AFF4	HGNC:17869	ENSG00000072364	GGGCCAGACUGGGCUGGGCUGUGGG
hsa_m5C_775	chr10	33180042	33180043	-	ENST00000265371	C3331	m5C	C4	5'-GGACGGAAGUGGAAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	16	chr10:33180031-33180046	NRP1	HGNC:8004	ENSG00000099250	GGACGGAAGUGGAAGG
hsa_m5C_776	chr3	47414988	47414989	-	ENST00000265565	C3385	m5C	C5	5'-GGACCCCAGGGCGGGG-3'	...((((.....)))) ( -6.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr3:47414978-47414993	SCAP	HGNC:30634	ENSG00000114650	GGACCCCAGGGCGGGG
hsa_m5C_777	chr3	47414095	47414096	-	ENST00000265565	C3839	m5C	C5	5'-G^GACCUGGGCUGUGGUGCAAGCUUGG-3'	....(((((((........))))))) ( -6.20)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr3:47414075-47414099;47414180-47414180	SCAP	HGNC:30634	ENSG00000114650	GGACCUGGGCUGUGGUGCAAGCUUGG
hsa_m5C_778	chr11	68047776	68047777	+	ENST00000265686	C1535	m5C	C14	5'-GGCUGGAGUGUGGCCGCCAUGG-3'	(((((.....)))))....... ( -5.60)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	22	chr11:68047764-68047785	TCIRG1	HGNC:11647	ENSG00000110719	GGCUGGAGUGUGGCCGCCAUGG
hsa_m5C_779	chr11	68047777	68047778	+	ENST00000265686	C1536	m5C	C15	5'-GGCUGGAGUGUGGCCGCCAUGG-3'	(((((.....)))))....... ( -5.60)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	22	chr11:68047764-68047785	TCIRG1	HGNC:11647	ENSG00000110719	GGCUGGAGUGUGGCCGCCAUGG
hsa_m5C_780	chr7	92528824	92528825	+	ENST00000265732	C31	m5C	C18	5'-GGCAAGAUGGCGUCGAGCGGCGGGG-3'	..........((((....))))... ( -3.70)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr7:92528808-92528832	RBM48	HGNC:21785	ENSG00000127993	GGCAAGAUGGCGUCGAGCGGCGGGG
hsa_m5C_781	chr7	36399270	36399271	+	ENST00000265748	C530	m5C	C6	5'-GGCAUCACUGCUGGGCAUGAGGAGAGGG-3'	((((....))))................ ( -2.50)	bulge	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr7:36399266-36399293	ANLN	HGNC:14082	ENSG00000011426	GGCAUCACUGCUGGGCAUGAGGAGAGGG
hsa_m5C_782	chr7	36399272	36399273	+	ENST00000265748	C532	m5C	C8	5'-GGCAUCACUGCUGGGCAUGAGGAGAGGG-3'	((((....))))................ ( -2.50)	bulge	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr7:36399266-36399293	ANLN	HGNC:14082	ENSG00000011426	GGCAUCACUGCUGGGCAUGAGGAGAGGG
hsa_m5C_783	chr7	36399280	36399281	+	ENST00000265748	C540	m5C	C16	5'-GGCAUCACUGCUGGGCAUGAGGAGAGGG-3'	((((....))))................ ( -2.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr7:36399266-36399293	ANLN	HGNC:14082	ENSG00000011426	GGCAUCACUGCUGGGCAUGAGGAGAGGG
hsa_m5C_784	chr7	73698059	73698060	+	ENST00000265758	C1049	m5C	C7	5'-GGGAGGCUGAGGUGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr7:73698054-73698068	BUD23	HGNC:16405	ENSG00000071462	GGGAGGCUGAGGUGG
hsa_m5C_785	chr8	23290399	23290400	+	ENST00000265806	C851	m5C	C13	5'-GGAGGAAGAGGACGAAG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr8:23290388-23290404	R3HCC1	HGNC:27329	ENSG00000104679	GGAGGAAGAGGACGAAG
hsa_m5C_786	chr11	6224473	6224474	-	ENST00000265978	C402	m5C	C14	5'-GGCCUCCCGGGGCCCUGG-3'	(((((....))))).... ( -7.50)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr11:6224470-6224487	FHIP1B	HGNC:25378	ENSG00000051009	GGCCUCCCGGGGCCCUGG
hsa_m5C_787	chr11	10513825	10513826	-	ENST00000265981	C1896	m5C	C11	5'-GGCAUGGUGGCAGG-3'	.((......))... ( -0.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	14	chr11:10513823-10513836	RNF141	HGNC:21159	ENSG00000110315	GGCAUGGUGGCAGG
hsa_m5C_788	chr3	51382759	51382760	+	ENST00000266037	C7631	m5C	C15	5'-GGGUUCGGGGCUGGCAGGAGGG-3'	NA	bulge	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	22	chr3:51382746-51382767	DOCK3	HGNC:2989	ENSG00000088538	GGGUUCGGGGCUGGCAGGAGGG
hsa_m5C_789	chr20	63739902	63739903	+	ENST00000266077	C128	m5C	C3	5'-GGCCGGCCGGCCAUGG-3'	((((....)))).... ( -7.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr20:63739901-63739916	SLC2A4RG	HGNC:15930	ENSG00000125520	GGCCGGCCGGCCAUGG
hsa_m5C_790	chr22	30425857	30425858	+	ENST00000266263	C91	m5C	C12	5'-GGCUGUAGUGGCCGGGGCCGUGGCGG-3'	..((((.(((((....))))).)))) ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr22:30425847-30425872	MTFP1	HGNC:26945	ENSG00000242114	GGCUGUAGUGGCCGGGGCCGUGGCGG
hsa_m5C_791	chr12	563018	563019	+	ENST00000266383	C5003	m5C	C24	5'-GGGAGAAUGGAGCCCGUGGAGAACCUUCUGGGGGGUCGGGG-3'	.........((.(((.(((((....))))).))).)).... (-13.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	41	chr12:562996-563036	B4GALNT3	HGNC:24137	ENSG00000139044	GGGAGAAUGGAGCCCGUGGAGAACCUUCUGGGGGGUCGGGG
hsa_m5C_792	chr12	27333008	27333009	+	ENST00000266503	C174	m5C	C15	5'-GGGCCGGGGCAGGGCGGG-3'	..(((.......)))... ( -4.70)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;RMVar database	28418038	18	chr12:27332995-27333012	BMAL2	HGNC:18984	ENSG00000029153	GGGCCGGGGCAGGGCGGG
hsa_m5C_793	chr12	7095233	7095234	-	ENST00000266542	C2655	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;Muscle,T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr12:7095225-7095239	C1RL	HGNC:21265	ENSG00000139178	GGAGGCUGAGGCAGG
hsa_m5C_794	chr12	7095227	7095228	-	ENST00000266542	C2661	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Muscle	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr12:7095225-7095239	C1RL	HGNC:21265	ENSG00000139178	GGAGGCUGAGGCAGG
hsa_m5C_795	chr12	7141401	7141402	+	ENST00000266546	C1762	m5C	C14	5'-GGGGCCUGCUGGACUG^AGG-3'	..((((....)).)).... ( -1.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr12:7141389-7141404;7142086-7142088	CLSTN3	HGNC:18371	ENSG00000139182	GGGGCCUGCUGGACUGAGG
hsa_m5C_796	chr12	56236702	56236703	+	ENST00000266980	C1457	m5C	C11	5'-GGAUGGUCCUCCUGGGAGAUGG-3'	......((((...))))..... ( -2.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr12:56236693-56236714	SLC39A5	HGNC:20502	ENSG00000139540	GGAUGGUCCUCCUGGGAGAUGG
hsa_m5C_797	chr12	53482982	53482983	-	ENST00000267079	C1947	m5C	C8	5'-GGAGGACCAGGAAGCCCAG-3'	((....)).((....)).. ( -1.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr12:53482972-53482990	MAP3K12	HGNC:6851	ENSG00000139625	GGAGGACCAGGAAGCCCAG
hsa_m5C_798	chr12	53158388	53158389	-	ENST00000267085	C1919	m5C	C7	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	15	chr12:53158381-53158395	CSAD	HGNC:18966	ENSG00000139631	GGGAGGCCGAGGCGG
hsa_m5C_799	chr12	53158387	53158388	-	ENST00000267085	C1920	m5C	C8	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	15	chr12:53158381-53158395	CSAD	HGNC:18966	ENSG00000139631	GGGAGGCCGAGGCGG
hsa_m5C_800	chr12	53158382	53158383	-	ENST00000267085	C1925	m5C	C13	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	15	chr12:53158381-53158395	CSAD	HGNC:18966	ENSG00000139631	GGGAGGCCGAGGCGG
hsa_m5C_801	chr13	48362858	48362859	+	ENST00000267163	C925	m5C	C3	5'-GGCGAGGUCAGAACAGGAGUGCACGG-3'	(((...)))................. ( -0.30)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr13:48362857-48362882	RB1	HGNC:9884	ENSG00000139687	GGCGAGGUCAGAACAGGAGUGCACGG
hsa_m5C_802	chr12	121793638	121793639	-	ENST00000267205	C50	m5C	C7	5'-GGGCUCCGGGCAAUGGAUGCCCCCGG-3'	((((((((.....)))).)))).... (-11.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr12:121793620-121793645	RHOF	HGNC:15703	ENSG00000139725	GGGCUCCGGGCAAUGGAUGCCCCCGG
hsa_m5C_803	chr12	121793622	121793623	-	ENST00000267205	C66	m5C	C23	5'-GGGCUCCGGGCAAUGGAUGCCCCCGG-3'	((((((((.....)))).)))).... (-11.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr12:121793620-121793645	RHOF	HGNC:15703	ENSG00000139725	GGGCUCCGGGCAAUGGAUGCCCCCGG
hsa_m5C_804	chr12	121793621	121793622	-	ENST00000267205	C67	m5C	C24	5'-GGGCUCCGGGCAAUGGAUGCCCCCGG-3'	((((((((.....)))).)))).... (-11.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr12:121793620-121793645	RHOF	HGNC:15703	ENSG00000139725	GGGCUCCGGGCAAUGGAUGCCCCCGG
hsa_m5C_805	chr15	51737638	51737639	-	ENST00000267838	C17	m5C	C3	5'-GGCGGCCUCGGCAGG-3'	....((....))... ( -2.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr15:51737627-51737641	LYSMD2	HGNC:28571	ENSG00000140280	GGCGGCCUCGGCAGG
hsa_m5C_806	chr15	42920729	42920730	-	ENST00000267890	C49	m5C	C15	5'-GGACGAGGCGGCGGCGGCGGCAGGAGGGG-3'	.......((.((....)).))........ ( -6.40)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	29	chr15:42920716-42920744	TTBK2	HGNC:19141	ENSG00000128881	GGACGAGGCGGCGGCGGCGGCAGGAGGGG
hsa_m5C_807	chr15	77045675	77045676	-	ENST00000267970	C2076	m5C	C17	5'-GGAGUUCCGGAGAGGUCAGGGG-3'	.((.(((....))).))..... ( -2.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr15:77045671-77045692	TSPAN3	HGNC:17752	ENSG00000140391	GGAGUUCCGGAGAGGUCAGGGG
hsa_m5C_808	chr15	77071083	77071084	-	ENST00000267970	C26	m5C	C19	5'-GGGGUCGGGGCUGCGCGACGGCGCAGGGGCUGCGGGG-3'	....(((.((((((((....))))...)))).))).. (-15.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	30526041	37	chr15:77071066-77071102	TSPAN3	HGNC:17752	ENSG00000140391	GGGGUCGGGGCUGCGCGACGGCGCAGGGGCUGCGGGG
hsa_m5C_809	chr15	77071069	77071070	-	ENST00000267970	C40	m5C	C33	5'-GGGGUCGGGGCUGCGCGACGGCGCAGGGGCUGCGGGG-3'	....(((.((((((((....))))...)))).))).. (-15.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	37	chr15:77071066-77071102	TSPAN3	HGNC:17752	ENSG00000140391	GGGGUCGGGGCUGCGCGACGGCGCAGGGGCUGCGGGG
hsa_m5C_810	chr15	81003313	81003314	+	ENST00000267984	C2392	m5C	C18	5'-GGCUUUAAGGGAGAGGUCUUCGCCCAGG-3'	........(((.((.....)).)))... ( -5.40)	loop	mRNA	293T;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	28	chr15:81003297-81003324	TLNRD1	HGNC:13519	ENSG00000140406	GGCUUUAAGGGAGAGGUCUUCGCCCAGG
hsa_m5C_811	chr17	18930770	18930771	+	ENST00000268835	C1442	m5C	C17	5'-GGUGGGAUGGAUUUCACAGG-3'	.((((((....))))))... ( -3.50)	loop	mRNA	HeLa,siControl;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;RMVar database	28418038;38168991	20	chr17:18930755-18930774	PRPSAP2	HGNC:9467	ENSG00000141127	GGUGGGAUGGAUUUCACAGG
hsa_m5C_812	chr17	2337646	2337647	+	ENST00000268989	C147	m5C	C22	5'-GGCGCGGAGGCGGCGAGGGCGCGGGG-3'	..(((....)))(((....))).... ( -7.10)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	26	chr17:2337626-2337651	SGSM2	HGNC:29026	ENSG00000141258	GGCGCGGAGGCGGCGAGGGCGCGGGG
hsa_m5C_813	chr17	59660562	59660563	+	ENST00000269122	C1379	m5C	C9	5'-GGAGGCAGCAAAGGUGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	17	chr17:59660555-59660571	CLTC	HGNC:2092	ENSG00000141367	GGAGGCAGCAAAGGUGG
hsa_m5C_814	chr18	12377051	12377052	-	ENST00000269143	C176	m5C	C12	5'-GGCUGUGGGGCCGGGGCGG-3'	((((....))))....... ( -6.00)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	19	chr18:12377045-12377063	AFG3L2	HGNC:315	ENSG00000141385	GGCUGUGGGGCCGGGGCGG
hsa_m5C_815	chr18	11981626	11981627	+	ENST00000269159	C121	m5C	C32	5'-GGGACGGCGGGAUCCGGUGGGAGCCGGAGUCCCGCCGAGGG-3'	....((((((((((((((....)))))).)))))))).... (-28.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	41	chr18:11981596-11981636	IMPA2	HGNC:6051	ENSG00000141401	GGGACGGCGGGAUCCGGUGGGAGCCGGAGUCCCGCCGAGGG
hsa_m5C_816	chr18	11981629	11981630	+	ENST00000269159	C124	m5C	C35	5'-GGGACGGCGGGAUCCGGUGGGAGCCGGAGUCCCGCCGAGGG-3'	....((((((((((((((....)))))).)))))))).... (-28.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	41	chr18:11981596-11981636	IMPA2	HGNC:6051	ENSG00000141401	GGGACGGCGGGAUCCGGUGGGAGCCGGAGUCCCGCCGAGGG
hsa_m5C_817	chr18	11981630	11981631	+	ENST00000269159	C125	m5C	C36	5'-GGGACGGCGGGAUCCGGUGGGAGCCGGAGUCCCGCCGAGGG-3'	....((((((((((((((....)))))).)))))))).... (-28.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	41	chr18:11981596-11981636	IMPA2	HGNC:6051	ENSG00000141401	GGGACGGCGGGAUCCGGUGGGAGCCGGAGUCCCGCCGAGGG
hsa_m5C_818	chr18	22171670	22171671	+	ENST00000269216	C658	m5C	C3	5'-GGCGGCAGCAGCCGCGGCGG-3'	.(((((....)))))..... (-10.00)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr18:22171669-22171688	GATA6	HGNC:4174	ENSG00000141448	GGCGGCAGCAGCCGCGGCGG
hsa_m5C_819	chr18	22171679	22171680	+	ENST00000269216	C667	m5C	C12	5'-GGCGGCAGCAGCCGCGGCGG-3'	.(((((....)))))..... (-10.00)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr18:22171669-22171688	GATA6	HGNC:4174	ENSG00000141448	GGCGGCAGCAGCCGCGGCGG
hsa_m5C_820	chr18	22171680	22171681	+	ENST00000269216	C668	m5C	C13	5'-GGCGGCAGCAGCCGCGGCGG-3'	.(((((....)))))..... (-10.00)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr18:22171669-22171688	GATA6	HGNC:4174	ENSG00000141448	GGCGGCAGCAGCCGCGGCGG
hsa_m5C_821	chr18	22171682	22171683	+	ENST00000269216	C670	m5C	C15	5'-GGCGGCAGCAGCCGCGGCGG-3'	.(((((....)))))..... (-10.00)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	20	chr18:22171669-22171688	GATA6	HGNC:4174	ENSG00000141448	GGCGGCAGCAGCCGCGGCGG
hsa_m5C_822	chr18	22171685	22171686	+	ENST00000269216	C673	m5C	C18	5'-GGCGGCAGCAGCCGCGGCGG-3'	.(((((....)))))..... (-10.00)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr18:22171669-22171688	GATA6	HGNC:4174	ENSG00000141448	GGCGGCAGCAGCCGCGGCGG
hsa_m5C_823	chr18	22171303	22171304	+	ENST00000269216	C291	m5C	C18	5'-GGGGCGGAGAGCGGGGCCCCGG-3'	(((((..........))))).. (-10.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr18:22171287-22171308	GATA6	HGNC:4174	ENSG00000141448	GGGGCGGAGAGCGGGGCCCCGG
hsa_m5C_824	chr17	81869039	81869040	-	ENST00000269321	C518	m5C	C13	5'-GGCAGCUAUGGGCCCCGGGCCGAGG-3'	..........((((...)))).... ( -6.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	25	chr17:81869028-81869052	ARHGDIA	HGNC:678	ENSG00000141522	GGCAGCUAUGGGCCCCGGGCCGAGG
hsa_m5C_825	chr17	81869038	81869039	-	ENST00000269321	C519	m5C	C14	5'-GGCAGCUAUGGGCCCCGGGCCGAGG-3'	..........((((...)))).... ( -6.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr17:81869028-81869052	ARHGDIA	HGNC:678	ENSG00000141522	GGCAGCUAUGGGCCCCGGGCCGAGG
hsa_m5C_826	chr17	81869037	81869038	-	ENST00000269321	C520	m5C	C15	5'-GGCAGCUAUGGGCCCCGGGCCGAGG-3'	..........((((...)))).... ( -6.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr17:81869028-81869052	ARHGDIA	HGNC:678	ENSG00000141522	GGCAGCUAUGGGCCCCGGGCCGAGG
hsa_m5C_827	chr17	81869036	81869037	-	ENST00000269321	C521	m5C	C16	5'-GGCAGCUAUGGGCCCCGGGCCGAGG-3'	..........((((...)))).... ( -6.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr17:81869028-81869052	ARHGDIA	HGNC:678	ENSG00000141522	GGCAGCUAUGGGCCCCGGGCCGAGG
hsa_m5C_828	chr17	81869032	81869033	-	ENST00000269321	C525	m5C	C20	5'-GGCAGCUAUGGGCCCCGGGCCGAGG-3'	..........((((...)))).... ( -6.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr17:81869028-81869052	ARHGDIA	HGNC:678	ENSG00000141522	GGCAGCUAUGGGCCCCGGGCCGAGG
hsa_m5C_829	chr17	81869031	81869032	-	ENST00000269321	C526	m5C	C21	5'-GGCAGCUAUGGGCCCCGGGCCGAGG-3'	..........((((...)))).... ( -6.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr17:81869028-81869052	ARHGDIA	HGNC:678	ENSG00000141522	GGCAGCUAUGGGCCCCGGGCCGAGG
hsa_m5C_830	chr17	75889300	75889301	-	ENST00000269383	C3046	m5C	C12	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr17:75889298-75889312	TRIM65	HGNC:27316	ENSG00000141569	GGAGGCCGAGGCAGG
hsa_m5C_831	chr17	75891249	75891250	-	ENST00000269383	C1097	m5C	C4	5'-GGGCCCAGGCGGGCCCGG-3'	((((((....)))))).. (-14.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	18	chr17:75891236-75891253	TRIM65	HGNC:27316	ENSG00000141569	GGGCCCAGGCGGGCCCGG
hsa_m5C_832	chr17	75891248	75891249	-	ENST00000269383	C1098	m5C	C5	5'-GGGCCCAGGCGGGCCCGG-3'	((((((....)))))).. (-14.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	18	chr17:75891236-75891253	TRIM65	HGNC:27316	ENSG00000141569	GGGCCCAGGCGGGCCCGG
hsa_m5C_833	chr17	75891247	75891248	-	ENST00000269383	C1099	m5C	C6	5'-GGGCCCAGGCGGGCCCGG-3'	((((((....)))))).. (-14.20)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	18	chr17:75891236-75891253	TRIM65	HGNC:27316	ENSG00000141569	GGGCCCAGGCGGGCCCGG
hsa_m5C_834	chr17	75891239	75891240	-	ENST00000269383	C1107	m5C	C14	5'-GGGCCCAGGCGGGCCCGG-3'	((((((....)))))).. (-14.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	18	chr17:75891236-75891253	TRIM65	HGNC:27316	ENSG00000141569	GGGCCCAGGCGGGCCCGG
hsa_m5C_835	chr17	75891238	75891239	-	ENST00000269383	C1108	m5C	C15	5'-GGGCCCAGGCGGGCCCGG-3'	((((((....)))))).. (-14.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	18	chr17:75891236-75891253	TRIM65	HGNC:27316	ENSG00000141569	GGGCCCAGGCGGGCCCGG
hsa_m5C_836	chr17	75891237	75891238	-	ENST00000269383	C1109	m5C	C16	5'-GGGCCCAGGCGGGCCCGG-3'	((((((....)))))).. (-14.20)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	18	chr17:75891236-75891253	TRIM65	HGNC:27316	ENSG00000141569	GGGCCCAGGCGGGCCCGG
hsa_m5C_837	chr17	81189707	81189708	-	ENST00000269392	C3561	m5C	C10	5'-GGACGUGGGCCCAGAGGCCCACAGGG-3'	....(((((((....))))))).... (-14.50)	loop	mRNA	HeLa	RBS-Seq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30872485	26	chr17:81189692-81189717	CEP131	HGNC:29511	ENSG00000141577	GGACGUGGGCCCAGAGGCCCACAGGG
hsa_m5C_838	chr17	81198108	81198109	-	ENST00000269392	C1724	m5C	C16	5'-GGCCAGCGAGGUGACCACG^GAGG-3'	..((..((.((...)).))..)) ( -3.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr17:81197885-81197888;81198106-81198124	CEP131	HGNC:29511	ENSG00000141577	GGCCAGCGAGGUGACCACGGAGG
hsa_m5C_839	chr17	79835698	79835699	-	ENST00000269397	C382	m5C	C5	5'-GGAGCAGCUGAUGGGAUAUCGGAAGAGAGG-3'	.......((((((...))))))........ ( -3.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr17:79835674-79835703	CBX4	HGNC:1554	ENSG00000141582	GGAGCAGCUGAUGGGAUAUCGGAAGAGAGG
hsa_m5C_840	chr17	79835695	79835696	-	ENST00000269397	C385	m5C	C8	5'-GGAGCAGCUGAUGGGAUAUCGGAAGAGAGG-3'	.......((((((...))))))........ ( -3.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr17:79835674-79835703	CBX4	HGNC:1554	ENSG00000141582	GGAGCAGCUGAUGGGAUAUCGGAAGAGAGG
hsa_m5C_841	chr18	62523672	62523673	+	ENST00000269499	C649	m5C	C19	5'-GGGGGCGGGUAUGCCGGGCGGCGGCGGG-3'	............((((.....))))... ( -7.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	28	chr18:62523655-62523682	ZCCHC2	HGNC:22916	ENSG00000141664	GGGGGCGGGUAUGCCGGGCGGCGGCGGG
hsa_m5C_842	chr18	62523675	62523676	+	ENST00000269499	C652	m5C	C22	5'-GGGGGCGGGUAUGCCGGGCGGCGGCGGG-3'	............((((.....))))... ( -7.10)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	28	chr18:62523655-62523682	ZCCHC2	HGNC:22916	ENSG00000141664	GGGGGCGGGUAUGCCGGGCGGCGGCGGG
hsa_m5C_843	chr18	62523678	62523679	+	ENST00000269499	C655	m5C	C25	5'-GGGGGCGGGUAUGCCGGGCGGCGGCGGG-3'	............((((.....))))... ( -7.10)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	28	chr18:62523655-62523682	ZCCHC2	HGNC:22916	ENSG00000141664	GGGGGCGGGUAUGCCGGGCGGCGGCGGG
hsa_m5C_844	chr19	15373977	15373978	-	ENST00000269701	C235	m5C	C3	5'-GGCCGCCAAGGCCAAUGAUGGCGGCCUGG-3'	((((((((..........))))))))... (-16.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	29	chr19:15373952-15373980	AKAP8	HGNC:378	ENSG00000105127	GGCCGCCAAGGCCAAUGAUGGCGGCCUGG
hsa_m5C_845	chr19	15373976	15373977	-	ENST00000269701	C236	m5C	C4	5'-GGCCGCCAAGGCCAAUGAUGGCGGCCUGG-3'	((((((((..........))))))))... (-16.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	29	chr19:15373952-15373980	AKAP8	HGNC:378	ENSG00000105127	GGCCGCCAAGGCCAAUGAUGGCGGCCUGG
hsa_m5C_846	chr19	15373974	15373975	-	ENST00000269701	C238	m5C	C6	5'-GGCCGCCAAGGCCAAUGAUGGCGGCCUGG-3'	((((((((..........))))))))... (-16.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr19:15373952-15373980	AKAP8	HGNC:378	ENSG00000105127	GGCCGCCAAGGCCAAUGAUGGCGGCCUGG
hsa_m5C_847	chr19	15373955	15373956	-	ENST00000269701	C257	m5C	C25	5'-GGCCGCCAAGGCCAAUGAUGGCGGCCUGG-3'	((((((((..........))))))))... (-16.20)	loop	mRNA	HeLa,rip antibody: ALYREF;HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	29	chr19:15373952-15373980	AKAP8	HGNC:378	ENSG00000105127	GGCCGCCAAGGCCAAUGAUGGCGGCCUGG
hsa_m5C_848	chr19	15373954	15373955	-	ENST00000269701	C258	m5C	C26	5'-GGCCGCCAAGGCCAAUGAUGGCGGCCUGG-3'	((((((((..........))))))))... (-16.20)	loop	mRNA	HeLa,rip antibody: ALYREF;HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	29	chr19:15373952-15373980	AKAP8	HGNC:378	ENSG00000105127	GGCCGCCAAGGCCAAUGAUGGCGGCCUGG
hsa_m5C_849	chr19	4793202	4793203	+	ENST00000269856	C1470	m5C	C9	5'-GGACCGGGCCGCCAAAGGCAGCCUGG-3'	...((((((.(((...))).)))))) (-14.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr19:4793195-4793220	FEM1A	HGNC:16934	ENSG00000141965	GGACCGGGCCGCCAAAGGCAGCCUGG
hsa_m5C_850	chr19	18433029	18433030	+	ENST00000270061	C1150	m5C	C11	5'-GGGCAGGGCGCCGGCAGGG-3'	.(((.....)))....... ( -4.10)	bulge	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr19:18433020-18433038	SSBP4	HGNC:15676	ENSG00000130511	GGGCAGGGCGCCGGCAGGG
hsa_m5C_851	chr19	18433030	18433031	+	ENST00000270061	C1151	m5C	C12	5'-GGGCAGGGCGCCGGCAGGG-3'	.(((.....)))....... ( -4.10)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr19:18433020-18433038	SSBP4	HGNC:15676	ENSG00000130511	GGGCAGGGCGCCGGCAGGG
hsa_m5C_852	chr21	43419063	43419064	-	ENST00000270162	C1555	m5C	C15	5'-GGCCGGAGGCACACCCUGG-3'	..((((.((....)))))) ( -5.30)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr21:43419060-43419078	SIK1	HGNC:11142	ENSG00000142178	GGCCGGAGGCACACCCUGG
hsa_m5C_853	chr19	45792430	45792431	-	ENST00000270223	C415	m5C	C5	5'-GGGGCCGGGGAGCCGCCCGCCACGCCCGCGGGGCUGGGCUCGGGG-3'	.((((.((....))))))(((..((((...))))..)))...... (-21.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr19:45792391-45792435	DMWD	HGNC:2936	ENSG00000185800	GGGGCCGGGGAGCCGCCCGCCACGCCCGCGGGGCUGGGCUCGGGG
hsa_m5C_854	chr19	45792429	45792430	-	ENST00000270223	C416	m5C	C6	5'-GGGGCCGGGGAGCCGCCCGCCACGCCCGCGGGGCUGGGCUCGGGG-3'	.((((.((....))))))(((..((((...))))..)))...... (-21.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr19:45792391-45792435	DMWD	HGNC:2936	ENSG00000185800	GGGGCCGGGGAGCCGCCCGCCACGCCCGCGGGGCUGGGCUCGGGG
hsa_m5C_855	chr19	45792422	45792423	-	ENST00000270223	C423	m5C	C13	5'-GGGGCCGGGGAGCCGCCCGCCACGCCCGCGGGGCUGGGCUCGGGG-3'	.((((.((....))))))(((..((((...))))..)))...... (-21.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr19:45792391-45792435	DMWD	HGNC:2936	ENSG00000185800	GGGGCCGGGGAGCCGCCCGCCACGCCCGCGGGGCUGGGCUCGGGG
hsa_m5C_856	chr19	45792417	45792418	-	ENST00000270223	C428	m5C	C18	5'-GGGGCCGGGGAGCCGCCCGCCACGCCCGCGGGGCUGGGCUCGGGG-3'	.((((.((....))))))(((..((((...))))..)))...... (-21.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr19:45792391-45792435	DMWD	HGNC:2936	ENSG00000185800	GGGGCCGGGGAGCCGCCCGCCACGCCCGCGGGGCUGGGCUCGGGG
hsa_m5C_857	chr1	3434653	3434654	+	ENST00000270722	C4731	m5C	C12	5'-GGAAUUGGUGUCAGGACCGCCACGUGG-3'	.....(((((.......)))))..... ( -4.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr1:3434643-3434669	PRDM16	HGNC:14000	ENSG00000142611	GGAAUUGGUGUCAGGACCGCCACGUGG
hsa_m5C_858	chr1	3433830	3433831	+	ENST00000270722	C3908	m5C	C18	5'-GGCUGGGCAGCCGGGGGCCGGUGGCCAGAGCGAGGG-3'	.(((.(((.(((((...))))).)))..)))..... (-16.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	36	chr1:3433814-3433849	PRDM16	HGNC:14000	ENSG00000142611	GGCUGGGCAGCCGGGGGCCGGUGGCCAGAGCGAGGG
hsa_m5C_859	chr1	36322608	36322609	-	ENST00000270824	C476	m5C	C12	5'-GGCCCCGGGGCCCGG-3'	((((....))))... ( -6.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr1:36322606-36322620	EVA1B	HGNC:25558	ENSG00000142694	GGCCCCGGGGCCCGG
hsa_m5C_860	chr4	127880921	127880922	+	ENST00000270861	C30	m5C	C14	5'-GGACGGCAAGCGGCGG-3'	.....((.....)).. ( -0.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr4:127880909-127880924	PLK4	HGNC:11397	ENSG00000142731	GGACGGCAAGCGGCGG
hsa_m5C_861	chr1	109258697	109258698	+	ENST00000271332	C4118	m5C	C17	5'-GGGCCAGCCGCCAGGGCCCGGGGGCGGG-3'	...((.(((.((.......)).))))). (-11.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	28	chr1:109258682-109258709	CELSR2	HGNC:3231	ENSG00000143126	GGGCCAGCCGCCAGGGCCCGGGGGCGGG
hsa_m5C_862	chr1	109258698	109258699	+	ENST00000271332	C4119	m5C	C18	5'-GGGCCAGCCGCCAGGGCCCGGGGGCGGG-3'	...((.(((.((.......)).))))). (-11.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	28	chr1:109258682-109258709	CELSR2	HGNC:3231	ENSG00000143126	GGGCCAGCCGCCAGGGCCCGGGGGCGGG
hsa_m5C_863	chr1	109258699	109258700	+	ENST00000271332	C4120	m5C	C19	5'-GGGCCAGCCGCCAGGGCCCGGGGGCGGG-3'	...((.(((.((.......)).))))). (-11.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	28	chr1:109258682-109258709	CELSR2	HGNC:3231	ENSG00000143126	GGGCCAGCCGCCAGGGCCCGGGGGCGGG
hsa_m5C_864	chr1	109258705	109258706	+	ENST00000271332	C4126	m5C	C25	5'-GGGCCAGCCGCCAGGGCCCGGGGGCGGG-3'	...((.(((.((.......)).))))). (-11.00)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	28	chr1:109258682-109258709	CELSR2	HGNC:3231	ENSG00000143126	GGGCCAGCCGCCAGGGCCCGGGGGCGGG
hsa_m5C_865	chr1	109273548	109273549	+	ENST00000271332	C9164	m5C	C37	5'-GGGUCUUCCCGGGGCUCCUCCGCUAGUGAGGGCAGCCGGGG-3'	.......(((((.((.((((.......))))))..))))). (-18.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	41	chr1:109273513-109273553	CELSR2	HGNC:3231	ENSG00000143126	GGGUCUUCCCGGGGCUCCUCCGCUAGUGAGGGCAGCCGGGG
hsa_m5C_866	chr1	109263657	109263658	+	ENST00000271332	C5423	m5C	C11	5'-GGUGGCCUGGCAUGG-3'	.(((......))).. ( -0.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr1:109263648-109263662	CELSR2	HGNC:3231	ENSG00000143126	GGUGGCCUGGCAUGG
hsa_m5C_867	chr1	168244495	168244496	+	ENST00000271375	C2515	m5C	C3	5'-GGCUGGGGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	11	chr1:168244494-168244504	SFT2D2	HGNC:25140	ENSG00000213064	GGCUGGGGAGG
hsa_m5C_868	chr1	153778167	153778168	+	ENST00000271857	C2313	m5C	C3	5'-GGCAGAACGUGGCCAUAAGGUCCGG-3'	.......((.((((....)))))). ( -6.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr1:153778166-153778190	SLC27A3	HGNC:10997	ENSG00000143554	GGCAGAACGUGGCCAUAAGGUCCGG
hsa_m5C_869	chr1	153778172	153778173	+	ENST00000271857	C2318	m5C	C8	5'-GGCAGAACGUGGCCAUAAGGUCCGG-3'	.......((.((((....)))))). ( -6.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr1:153778166-153778190	SLC27A3	HGNC:10997	ENSG00000143554	GGCAGAACGUGGCCAUAAGGUCCGG
hsa_m5C_870	chr1	153778178	153778179	+	ENST00000271857	C2324	m5C	C14	5'-GGCAGAACGUGGCCAUAAGGUCCGG-3'	.......((.((((....)))))). ( -6.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr1:153778166-153778190	SLC27A3	HGNC:10997	ENSG00000143554	GGCAGAACGUGGCCAUAAGGUCCGG
hsa_m5C_871	chr1	153778186	153778187	+	ENST00000271857	C2332	m5C	C22	5'-GGCAGAACGUGGCCAUAAGGUCCGG-3'	.......((.((((....)))))). ( -6.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr1:153778166-153778190	SLC27A3	HGNC:10997	ENSG00000143554	GGCAGAACGUGGCCAUAAGGUCCGG
hsa_m5C_872	chr1	153973962	153973963	+	ENST00000271889	C1354	m5C	C16	5'-GGAGCCACCUGGAGCCAAGGAUGCAAAUGG-3'	((..((....))..)).............. ( -5.50)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr1:153973948-153973977	CREB3L4	HGNC:18854	ENSG00000143578	GGAGCCACCUGGAGCCAAGGAUGCAAAUGG
hsa_m5C_873	chr1	227920967	227920968	-	ENST00000272164	C1693	m5C	C17	5'-GGGCGUACAGCUGGAGCAGGGUGCCGGGGGUCCUCUGGG-3'	.(((.....)))....(((((.(((...))).))))).. (-10.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	39	chr1:227920946-227920984	WNT9A	HGNC:12778	ENSG00000143816	GGGCGUACAGCUGGAGCAGGGUGCCGGGGGUCCUCUGGG
hsa_m5C_874	chr2	67397515	67397516	+	ENST00000272342	C184	m5C	C6	5'-GGCGGCGGAGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	11	chr2:67397511-67397521	ETAA1	HGNC:24648	ENSG00000143971	GGCGGCGGAGG
hsa_m5C_875	chr2	169878528	169878529	+	ENST00000272793	C1047	m5C	C6	5'-G^GUUUCAUAGGCGCAACAGGAACUUUGG-3'	((((((............)))))).... ( -2.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr2:169877637-169877637;169878525-169878551	UBR3	HGNC:30467	ENSG00000144357	GGUUUCAUAGGCGCAACAGGAACUUUGG
hsa_m5C_876	chr3	19947275	19947276	+	ENST00000273047	C180	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;RMVar database	28418038	11	chr3:19947268-19947278	RAB5A	HGNC:9783	ENSG00000144566	GGCGGCGGCGG
hsa_m5C_877	chr2	218594607	218594608	+	ENST00000273064	C1348	m5C	C3	5'-GGCAGGGAGGGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	12	chr2:218594606-218594617	CNOT9	HGNC:10445	ENSG00000144580	GGCAGGGAGGGG
hsa_m5C_878	chr3	49424103	49424104	-	ENST00000273598	C1456	m5C	C6	5'-GGAGGCCCAGGCAGG-3'	....((....))... ( -1.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	15	chr3:49424095-49424109	NICN1	HGNC:18317	ENSG00000145029	GGAGGCCCAGGCAGG
hsa_m5C_879	chr3	49424102	49424103	-	ENST00000273598	C1457	m5C	C7	5'-GGAGGCCCAGGCAGG-3'	....((....))... ( -1.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	15	chr3:49424095-49424109	NICN1	HGNC:18317	ENSG00000145029	GGAGGCCCAGGCAGG
hsa_m5C_880	chr3	49424097	49424098	-	ENST00000273598	C1462	m5C	C12	5'-GGAGGCCCAGGCAGG-3'	....((....))... ( -1.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	15	chr3:49424095-49424109	NICN1	HGNC:18317	ENSG00000145029	GGAGGCCCAGGCAGG
hsa_m5C_881	chr3	49423967	49423968	-	ENST00000273598	C1592	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr3:49423959-49423973	NICN1	HGNC:18317	ENSG00000145029	GGAGGCUGAGGCAGG
hsa_m5C_882	chr3	49423961	49423962	-	ENST00000273598	C1598	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr3:49423959-49423973	NICN1	HGNC:18317	ENSG00000145029	GGAGGCUGAGGCAGG
hsa_m5C_883	chr4	967324	967325	-	ENST00000273814	C1111	m5C	C5	5'-GGACCCUGGCCACCUGGAGCUGUGCCGG-3'	.....(((((((........)).))))) ( -6.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr4:967302-967329	DGKQ	HGNC:2856	ENSG00000145214	GGACCCUGGCCACCUGGAGCUGUGCCGG
hsa_m5C_884	chr4	973486	973487	-	ENST00000273814	C83	m5C	C20	5'-GGGCUCGGGCCGCUCGGGCCGGG-3'	.((((((((...))))))))... (-12.50)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr4:973484-973506	DGKQ	HGNC:2856	ENSG00000145214	GGGCUCGGGCCGCUCGGGCCGGG
hsa_m5C_885	chr4	967259	967260	-	ENST00000273814	C1176	m5C	C11	5'-GGGCUGGGGGCAAGGCUGGG-3'	.((((........))))... ( -3.30)	bulge	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	20	chr4:967251-967270	DGKQ	HGNC:2856	ENSG00000145214	GGGCUGGGGGCAAGGCUGGG
hsa_m5C_886	chr4	973367	973368	-	ENST00000273814	C202	m5C	C5	5'-GGGGCCGGGGCCGGGGCCGGG-3'	..((((........))))... ( -8.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	21	chr4:973352-973372	DGKQ	HGNC:2856	ENSG00000145214	GGGGCCGGGGCCGGGGCCGGG
hsa_m5C_887	chr4	973366	973367	-	ENST00000273814	C203	m5C	C6	5'-GGGGCCGGGGCCGGGGCCGGG-3'	..((((........))))... ( -8.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	21	chr4:973352-973372	DGKQ	HGNC:2856	ENSG00000145214	GGGGCCGGGGCCGGGGCCGGG
hsa_m5C_888	chr4	973360	973361	-	ENST00000273814	C209	m5C	C12	5'-GGGGCCGGGGCCGGGGCCGGG-3'	..((((........))))... ( -8.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	21	chr4:973352-973372	DGKQ	HGNC:2856	ENSG00000145214	GGGGCCGGGGCCGGGGCCGGG
hsa_m5C_889	chr4	139518033	139518034	-	ENST00000274031	C853	m5C	C10	5'-G^GUUGACAGCAGGGACUGGGCCCUUAAUGG-3'	......((..((((......))))...)). ( -5.40)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr4:139518014-139518042;139520277-139520277	SETD7	HGNC:30412	ENSG00000145391	GGUUGACAGCAGGGACUGGGCCCUUAAUGG
hsa_m5C_890	chr5	178120331	178120332	+	ENST00000274605	C755	m5C	C5	5'-GGGCCCCGGGCCAGCCAGGCCCGGG-3'	....((((((((.....)))))))) (-18.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr5:178120328-178120352	N4BP3	HGNC:29852	ENSG00000145911	GGGCCCCGGGCCAGCCAGGCCCGGG
hsa_m5C_891	chr5	178120337	178120338	+	ENST00000274605	C761	m5C	C11	5'-GGGCCCCGGGCCAGCCAGGCCCGGG-3'	....((((((((.....)))))))) (-18.40)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	25	chr5:178120328-178120352	N4BP3	HGNC:29852	ENSG00000145911	GGGCCCCGGGCCAGCCAGGCCCGGG
hsa_m5C_892	chr5	178120338	178120339	+	ENST00000274605	C762	m5C	C12	5'-GGGCCCCGGGCCAGCCAGGCCCGGG-3'	....((((((((.....)))))))) (-18.40)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	25	chr5:178120328-178120352	N4BP3	HGNC:29852	ENSG00000145911	GGGCCCCGGGCCAGCCAGGCCCGGG
hsa_m5C_893	chr5	178120346	178120347	+	ENST00000274605	C770	m5C	C20	5'-GGGCCCCGGGCCAGCCAGGCCCGGG-3'	....((((((((.....)))))))) (-18.40)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	25	chr5:178120328-178120352	N4BP3	HGNC:29852	ENSG00000145911	GGGCCCCGGGCCAGCCAGGCCCGGG
hsa_m5C_894	chr5	178120347	178120348	+	ENST00000274605	C771	m5C	C21	5'-GGGCCCCGGGCCAGCCAGGCCCGGG-3'	....((((((((.....)))))))) (-18.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	25	chr5:178120328-178120352	N4BP3	HGNC:29852	ENSG00000145911	GGGCCCCGGGCCAGCCAGGCCCGGG
hsa_m5C_895	chr5	178120348	178120349	+	ENST00000274605	C772	m5C	C22	5'-GGGCCCCGGGCCAGCCAGGCCCGGG-3'	....((((((((.....)))))))) (-18.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	25	chr5:178120328-178120352	N4BP3	HGNC:29852	ENSG00000145911	GGGCCCCGGGCCAGCCAGGCCCGGG
hsa_m5C_896	chr5	171456773	171456774	+	ENST00000274625	C1146	m5C	C15	5'-GGUGACCAAGAGGUCCCGUCGGAUCCGG-3'	((.((((....))))))........... ( -8.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr5:171456760-171456787	FGF18	HGNC:3674	ENSG00000156427	GGUGACCAAGAGGUCCCGUCGGAUCCGG
hsa_m5C_897	chr5	171456775	171456776	+	ENST00000274625	C1148	m5C	C17	5'-GGUGACCAAGAGGUCCCGUCGGAUCCGG-3'	((.((((....))))))........... ( -8.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr5:171456760-171456787	FGF18	HGNC:3674	ENSG00000156427	GGUGACCAAGAGGUCCCGUCGGAUCCGG
hsa_m5C_898	chr5	176528695	176528696	-	ENST00000274811	C2138	m5C	C5	5'-GGGGCCGGUGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	11	chr5:176528690-176528700	RNF44	HGNC:19180	ENSG00000146083	GGGGCCGGUGG
hsa_m5C_899	chr5	176528694	176528695	-	ENST00000274811	C2139	m5C	C6	5'-GGGGCCGGUGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	11	chr5:176528690-176528700	RNF44	HGNC:19180	ENSG00000146083	GGGGCCGGUGG
hsa_m5C_900	chr6	26598622	26598623	+	ENST00000274849	C827	m5C	C6	5'-GGGACCUUCCCUUGUCAGGGACUCCUGAGGGCCUGGG-3'	....(((.(((...(((((....))))))))...))) (-11.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	37	chr6:26598618-26598654	ABT1	HGNC:17369	ENSG00000146109	GGGACCUUCCCUUGUCAGGGACUCCUGAGGGCCUGGG
hsa_m5C_901	chr6	44265461	44265462	-	ENST00000275015	C327	m5C	C12	5'-GGGAAGGAGGCCGCCGCGGGCCGGG-3'	........((((......))))... ( -8.40)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr6:44265449-44265473	NFKBIE	HGNC:7799	ENSG00000146232	GGGAAGGAGGCCGCCGCGGGCCGGG
hsa_m5C_902	chr7	30504685	30504686	-	ENST00000275428	C144	m5C	C22	5'-GGCCAACUCGGGCUGCAAGGACGUCACGG-3'	((((......))))............... ( -5.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr7:30504679-30504707	GGCT	HGNC:21705	ENSG00000006625	GGCCAACUCGGGCUGCAAGGACGUCACGG
hsa_m5C_903	chr7	30504682	30504683	-	ENST00000275428	C147	m5C	C25	5'-GGCCAACUCGGGCUGCAAGGACGUCACGG-3'	((((......))))............... ( -5.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr7:30504679-30504707	GGCT	HGNC:21705	ENSG00000006625	GGCCAACUCGGGCUGCAAGGACGUCACGG
hsa_m5C_904	chr7	55206168	55206169	+	ENST00000275493	C4446	m5C	C14	5'-GGCCCCAGCAGGCCGGAUCGG-3'	((((......))))....... ( -7.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr7:55206156-55206176	EGFR	HGNC:3236	ENSG00000146648	GGCCCCAGCAGGCCGGAUCGG
hsa_m5C_905	chr7	76389498	76389499	-	ENST00000275560	C2638	m5C	C18	5'-GGGGACUGGGGGAGGGGCCAAAGCAGGG-3'	.....((..((......))..))..... ( -3.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database	28418038	28	chr7:76389489-76389516	SSC4D	HGNC:14461	ENSG00000146700	GGGGACUGGGGGAGGGGCCAAAGCAGGG
hsa_m5C_906	chr7	76389497	76389498	-	ENST00000275560	C2639	m5C	C19	5'-GGGGACUGGGGGAGGGGCCAAAGCAGGG-3'	.....((..((......))..))..... ( -3.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database	28418038	28	chr7:76389489-76389516	SSC4D	HGNC:14461	ENSG00000146700	GGGGACUGGGGGAGGGGCCAAAGCAGGG
hsa_m5C_907	chrX	48060919	48060920	-	ENST00000276054	C590	m5C	C9	5'-GGAUGUGGCUGUGGACUUCACGCAGG-3'	........(((((.......))))). ( -6.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chrX:48060903-48060928	ZNF630	HGNC:28855	ENSG00000221994	GGAUGUGGCUGUGGACUUCACGCAGG
hsa_m5C_908	chr8	25184845	25184846	+	ENST00000276440	C158	m5C	C27	5'-GGGCACGCAGGAGCGCGGGGCGGCGGCGG-3'	.....(((....((.....))....))). ( -7.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	29	chr8:25184820-25184848	DOCK5	HGNC:23476	ENSG00000147459	GGGCACGCAGGAGCGCGGGGCGGCGGCGG
hsa_m5C_909	chr8	25184903	25184904	+	ENST00000276440	C216	m5C	C13	5'-GGGGCGAGGUCGCCGCCAUGG-3'	((((((....)))).)).... ( -9.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr8:25184892-25184912	DOCK5	HGNC:23476	ENSG00000147459	GGGGCGAGGUCGCCGCCAUGG
hsa_m5C_910	chr8	70669006	70669007	-	ENST00000276590	C179	m5C	C7	5'-GGGGACCGGCCCCAG^G-3'	((((.....))))... ( -7.20)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr8:70661897-70661897;70668999-70669013	LACTB2	HGNC:18512	ENSG00000147592	GGGGACCGGCCCCAGG
hsa_m5C_911	chr9	6498112	6498113	+	ENST00000276893	C2155	m5C	C5	5'-GGACCUCUGAAGGAAUAGAACGGUCAAGG-3'	.((((((((......))))..)))).... ( -5.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr9:6498109-6498137	UHRF2	HGNC:12557	ENSG00000147854	GGACCUCUGAAGGAAUAGAACGGUCAAGG
hsa_m5C_912	chr9	6498114	6498115	+	ENST00000276893	C2157	m5C	C7	5'-GGACCUCUGAAGGAAUAGAACGGUCAAGG-3'	.((((((((......))))..)))).... ( -5.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr9:6498109-6498137	UHRF2	HGNC:12557	ENSG00000147854	GGACCUCUGAAGGAAUAGAACGGUCAAGG
hsa_m5C_913	chr9	6413395	6413396	+	ENST00000276893	C198	m5C	C4	5'-GGGCCCGAGCCGCAGGGAAAGCGG-3'	.........((((.......)))) ( -4.80)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	24	chr9:6413393-6413416	UHRF2	HGNC:12557	ENSG00000147854	GGGCCCGAGCCGCAGGGAAAGCGG
hsa_m5C_914	chr9	6413396	6413397	+	ENST00000276893	C199	m5C	C5	5'-GGGCCCGAGCCGCAGGGAAAGCGG-3'	.........((((.......)))) ( -4.80)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	24	chr9:6413393-6413416	UHRF2	HGNC:12557	ENSG00000147854	GGGCCCGAGCCGCAGGGAAAGCGG
hsa_m5C_915	chr9	6413397	6413398	+	ENST00000276893	C200	m5C	C6	5'-GGGCCCGAGCCGCAGGGAAAGCGG-3'	.........((((.......)))) ( -4.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	24	chr9:6413393-6413416	UHRF2	HGNC:12557	ENSG00000147854	GGGCCCGAGCCGCAGGGAAAGCGG
hsa_m5C_916	chr9	6413401	6413402	+	ENST00000276893	C204	m5C	C10	5'-GGGCCCGAGCCGCAGGGAAAGCGG-3'	.........((((.......)))) ( -4.80)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	24	chr9:6413393-6413416	UHRF2	HGNC:12557	ENSG00000147854	GGGCCCGAGCCGCAGGGAAAGCGG
hsa_m5C_917	chr9	6413402	6413403	+	ENST00000276893	C205	m5C	C11	5'-GGGCCCGAGCCGCAGGGAAAGCGG-3'	.........((((.......)))) ( -4.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	24	chr9:6413393-6413416	UHRF2	HGNC:12557	ENSG00000147854	GGGCCCGAGCCGCAGGGAAAGCGG
hsa_m5C_918	chr9	6413404	6413405	+	ENST00000276893	C207	m5C	C13	5'-GGGCCCGAGCCGCAGGGAAAGCGG-3'	.........((((.......)))) ( -4.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	24	chr9:6413393-6413416	UHRF2	HGNC:12557	ENSG00000147854	GGGCCCGAGCCGCAGGGAAAGCGG
hsa_m5C_919	chr9	6413413	6413414	+	ENST00000276893	C216	m5C	C22	5'-GGGCCCGAGCCGCAGGGAAAGCGG-3'	.........((((.......)))) ( -4.80)	bulge	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	24	chr9:6413393-6413416	UHRF2	HGNC:12557	ENSG00000147854	GGGCCCGAGCCGCAGGGAAAGCGG
hsa_m5C_920	chr9	93516008	93516009	+	ENST00000277165	C1389	m5C	C6	5'-GGGGGCGCCCCGGGCCAGGG-3'	((((...))))......... ( -6.20)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	20	chr9:93516004-93516023	FAM120A	HGNC:13247	ENSG00000048828	GGGGGCGCCCCGGGCCAGGG
hsa_m5C_921	chr9	136011587	136011588	-	ENST00000277554	C1852	m5C	C9	5'-GGCGGGGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	11	chr9:136011586-136011596	NACC2	HGNC:23846	ENSG00000148411	GGCGGGGGCGG
hsa_m5C_922	chr9	136049892	136049893	-	ENST00000277554	C789	m5C	C6	5'-GGUGGCGGCGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	11	chr9:136049888-136049898	NACC2	HGNC:23846	ENSG00000148411	GGUGGCGGCGG
hsa_m5C_923	chr9	136049889	136049890	-	ENST00000277554	C792	m5C	C9	5'-GGUGGCGGCGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	11	chr9:136049888-136049898	NACC2	HGNC:23846	ENSG00000148411	GGUGGCGGCGG
hsa_m5C_924	chr10	11870064	11870065	+	ENST00000277570	C1163	m5C	C9	5'-GGGGCCUGCCGGGCCCCGCUGAGAGUCUCCGGGCAGGGG-3'	(((((((...))))))).........((((.....)))) (-18.10)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	39	chr10:11870057-11870095	PROSER2	HGNC:23728	ENSG00000148426	GGGGCCUGCCGGGCCCCGCUGAGAGUCUCCGGGCAGGGG
hsa_m5C_925	chr10	11870065	11870066	+	ENST00000277570	C1164	m5C	C10	5'-GGGGCCUGCCGGGCCCCGCUGAGAGUCUCCGGGCAGGGG-3'	(((((((...))))))).........((((.....)))) (-18.10)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	39	chr10:11870057-11870095	PROSER2	HGNC:23728	ENSG00000148426	GGGGCCUGCCGGGCCCCGCUGAGAGUCUCCGGGCAGGGG
hsa_m5C_926	chr10	11870069	11870070	+	ENST00000277570	C1168	m5C	C14	5'-GGGGCCUGCCGGGCCCCGCUGAGAGUCUCCGGGCAGGGG-3'	(((((((...))))))).........((((.....)))) (-18.10)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	39	chr10:11870057-11870095	PROSER2	HGNC:23728	ENSG00000148426	GGGGCCUGCCGGGCCCCGCUGAGAGUCUCCGGGCAGGGG
hsa_m5C_927	chr10	11870070	11870071	+	ENST00000277570	C1169	m5C	C15	5'-GGGGCCUGCCGGGCCCCGCUGAGAGUCUCCGGGCAGGGG-3'	(((((((...))))))).........((((.....)))) (-18.10)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	39	chr10:11870057-11870095	PROSER2	HGNC:23728	ENSG00000148426	GGGGCCUGCCGGGCCCCGCUGAGAGUCUCCGGGCAGGGG
hsa_m5C_928	chr10	11870071	11870072	+	ENST00000277570	C1170	m5C	C16	5'-GGGGCCUGCCGGGCCCCGCUGAGAGUCUCCGGGCAGGGG-3'	(((((((...))))))).........((((.....)))) (-18.10)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	39	chr10:11870057-11870095	PROSER2	HGNC:23728	ENSG00000148426	GGGGCCUGCCGGGCCCCGCUGAGAGUCUCCGGGCAGGGG
hsa_m5C_929	chr10	11870072	11870073	+	ENST00000277570	C1171	m5C	C17	5'-GGGGCCUGCCGGGCCCCGCUGAGAGUCUCCGGGCAGGGG-3'	(((((((...))))))).........((((.....)))) (-18.10)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	39	chr10:11870057-11870095	PROSER2	HGNC:23728	ENSG00000148426	GGGGCCUGCCGGGCCCCGCUGAGAGUCUCCGGGCAGGGG
hsa_m5C_930	chr10	102147245	102147246	+	ENST00000278070	C4283	m5C	C3	5'-GGCUGGCAGGGCCGCCGAGG-3'	(((.(((...)))))).... ( -8.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr10:102147244-102147263	PPRC1	HGNC:30025	ENSG00000148840	GGCUGGCAGGGCCGCCGAGG
hsa_m5C_931	chr10	102141448	102141449	+	ENST00000278070	C2970	m5C	C4	5'-GGGCCCUUGGGAUGGGGCCCAGGG-3'	(((((((......))))))).... (-15.90)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	24	chr10:102141446-102141469	PPRC1	HGNC:30025	ENSG00000148840	GGGCCCUUGGGAUGGGGCCCAGGG
hsa_m5C_932	chr10	102141449	102141450	+	ENST00000278070	C2971	m5C	C5	5'-GGGCCCUUGGGAUGGGGCCCAGGG-3'	(((((((......))))))).... (-15.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	24	chr10:102141446-102141469	PPRC1	HGNC:30025	ENSG00000148840	GGGCCCUUGGGAUGGGGCCCAGGG
hsa_m5C_933	chr10	102141450	102141451	+	ENST00000278070	C2972	m5C	C6	5'-GGGCCCUUGGGAUGGGGCCCAGGG-3'	(((((((......))))))).... (-15.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	24	chr10:102141446-102141469	PPRC1	HGNC:30025	ENSG00000148840	GGGCCCUUGGGAUGGGGCCCAGGG
hsa_m5C_934	chr10	102141462	102141463	+	ENST00000278070	C2984	m5C	C18	5'-GGGCCCUUGGGAUGGGGCCCAGGG-3'	(((((((......))))))).... (-15.90)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	24	chr10:102141446-102141469	PPRC1	HGNC:30025	ENSG00000148840	GGGCCCUUGGGAUGGGGCCCAGGG
hsa_m5C_935	chr10	102141463	102141464	+	ENST00000278070	C2985	m5C	C19	5'-GGGCCCUUGGGAUGGGGCCCAGGG-3'	(((((((......))))))).... (-15.90)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	24	chr10:102141446-102141469	PPRC1	HGNC:30025	ENSG00000148840	GGGCCCUUGGGAUGGGGCCCAGGG
hsa_m5C_936	chr10	102141464	102141465	+	ENST00000278070	C2986	m5C	C20	5'-GGGCCCUUGGGAUGGGGCCCAGGG-3'	(((((((......))))))).... (-15.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	24	chr10:102141446-102141469	PPRC1	HGNC:30025	ENSG00000148840	GGGCCCUUGGGAUGGGGCCCAGGG
hsa_m5C_937	chr10	104312696	104312697	-	ENST00000278071	C3808	m5C	C10	5'-GGUUAAUUCCUGGUGGGGCAGCUCGG-3'	((((..((((....)))).))))... ( -2.90)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	26	chr10:104312681-104312706	ITPRIP	HGNC:29370	ENSG00000148841	GGUUAAUUCCUGGUGGGGCAGCUCGG
hsa_m5C_938	chr11	57327747	57327748	-	ENST00000278412	C2028	m5C	C7	5'-GGCAGGCGAGAUCUGGAAGG-3'	..((((.....))))..... ( -1.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr11:57327735-57327754	SSRP1	HGNC:11327	ENSG00000149136	GGCAGGCGAGAUCUGGAAGG
hsa_m5C_939	chr11	61863293	61863294	+	ENST00000278840	C1084	m5C	C14	5'-G^GUUCCUGGAGAGCCACUGGUUUGUGUGG-3'	(((((.....))))).............. ( -5.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr11:61863069-61863069;61863282-61863309	FADS2	HGNC:3575	ENSG00000134824	GGUUCCUGGAGAGCCACUGGUUUGUGUGG
hsa_m5C_940	chr20	46558727	46558728	-	ENST00000279027	C3141	m5C	C12	5'-GGAGCGCUUGGCCAGCUGGGAAGG-3'	..(((.........)))....... ( -2.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr20:46558716-46558739	SLC13A3	HGNC:14430	ENSG00000158296	GGAGCGCUUGGCCAGCUGGGAAGG
hsa_m5C_941	chr20	46558723	46558724	-	ENST00000279027	C3145	m5C	C16	5'-GGAGCGCUUGGCCAGCUGGGAAGG-3'	..(((.........)))....... ( -2.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr20:46558716-46558739	SLC13A3	HGNC:14430	ENSG00000158296	GGAGCGCUUGGCCAGCUGGGAAGG
hsa_m5C_942	chr11	65322328	65322329	+	ENST00000279249	C1875	m5C	C9	5'-GGGGUGGGCUUGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	13	chr11:65322321-65322333	CDC42EP2	HGNC:16263	ENSG00000149798	GGGGUGGGCUUGG
hsa_m5C_943	chr11	65096254	65096255	+	ENST00000279281	C42	m5C	C11	5'-GGAACGAUGGCGGCGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	16	chr11:65096245-65096260	VPS51	HGNC:1172	ENSG00000149823	GGAACGAUGGCGGCGG
hsa_m5C_944	chr11	65096257	65096258	+	ENST00000279281	C45	m5C	C14	5'-GGAACGAUGGCGGCGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	16	chr11:65096245-65096260	VPS51	HGNC:1172	ENSG00000149823	GGAACGAUGGCGGCGG
hsa_m5C_945	chr10	62091051	62091052	+	ENST00000279873	C1600	m5C	C6	5'-GGUGGCAGAGGAGGCGGGAGAGAAGGGG-3'	....((.......))............. ( -0.40)	loop	mRNA	spleen	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31061524	28	chr10:62091047-62091074	ARID5B	HGNC:17362	ENSG00000150347	GGUGGCAGAGGAGGCGGGAGAGAAGGGG
hsa_m5C_946	chr11	112143534	112143535	-	ENST00000280357	C840	m5C	C6	5'-GGAGGCUGAGGCGG-3'	....((....)).. ( -0.40)	loop	mRNA	liver,spleen;liver	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31061524	14	chr11:112143527-112143540	IL18	HGNC:5986	ENSG00000150782	GGAGGCUGAGGCGG
hsa_m5C_947	chr11	112143528	112143529	-	ENST00000280357	C846	m5C	C12	5'-GGAGGCUGAGGCGG-3'	....((....)).. ( -0.40)	loop	mRNA	liver,spleen;liver	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	14	chr11:112143527-112143540	IL18	HGNC:5986	ENSG00000150782	GGAGGCUGAGGCGG
hsa_m5C_948	chr16	31087640	31087641	-	ENST00000280606	C272	m5C	C3	5'-GGCGAGUGGCCCUGGCAGG-3'	(((.....)))........ ( -4.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	19	chr16:31087625-31087643	PRSS53	HGNC:34407	ENSG00000151006	GGCGAGUGGCCCUGGCAGG
hsa_m5C_949	chr16	31087632	31087633	-	ENST00000280606	C280	m5C	C11	5'-GGCGAGUGGCCCUGGCAGG-3'	(((.....)))........ ( -4.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	19	chr16:31087625-31087643	PRSS53	HGNC:34407	ENSG00000151006	GGCGAGUGGCCCUGGCAGG
hsa_m5C_950	chr16	31087631	31087632	-	ENST00000280606	C281	m5C	C12	5'-GGCGAGUGGCCCUGGCAGG-3'	(((.....)))........ ( -4.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	19	chr16:31087625-31087643	PRSS53	HGNC:34407	ENSG00000151006	GGCGAGUGGCCCUGGCAGG
hsa_m5C_951	chr12	113388510	113388511	+	ENST00000280800	C1669	m5C	C15	5'-GGCGGCCAGCGGUCCCACGUGG-3'	((.((((...))))))...... ( -6.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr12:113388497-113388518	PLBD2	HGNC:27283	ENSG00000151176	GGCGGCCAGCGGUCCCACGUGG
hsa_m5C_952	chr10	689655	689656	-	ENST00000280886	C13	m5C	C10	5'-GGUGCGGUUCCGCCGGGCGCGAGG-3'	.((.((((...)))).))...... ( -7.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr10:689642-689665	DIP2C	HGNC:29150	ENSG00000151240	GGUGCGGUUCCGCCGGGCGCGAGG
hsa_m5C_953	chr2	9207001	9207002	+	ENST00000281419	C191	m5C	C5	5'-GGAGCGGCGGCGG-3'	...((....)).. ( -1.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	13	chr2:9206998-9207010	ASAP2	HGNC:2721	ENSG00000151693	GGAGCGGCGGCGG
hsa_m5C_954	chr4	44678701	44678702	+	ENST00000281543	C283	m5C	C6	5'-GGUGGCCCCGGGG-3'	((.....)).... ( -0.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	13	chr4:44678697-44678709	GUF1	HGNC:25799	ENSG00000151806	GGUGGCCCCGGGG
hsa_m5C_955	chr4	44678702	44678703	+	ENST00000281543	C284	m5C	C7	5'-GGUGGCCCCGGGG-3'	((.....)).... ( -0.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	13	chr4:44678697-44678709	GUF1	HGNC:25799	ENSG00000151806	GGUGGCCCCGGGG
hsa_m5C_956	chr4	44678703	44678704	+	ENST00000281543	C285	m5C	C8	5'-GGUGGCCCCGGGG-3'	((.....)).... ( -0.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	13	chr4:44678697-44678709	GUF1	HGNC:25799	ENSG00000151806	GGUGGCCCCGGGG
hsa_m5C_957	chr4	44678704	44678705	+	ENST00000281543	C286	m5C	C9	5'-GGUGGCCCCGGGG-3'	((.....)).... ( -0.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	13	chr4:44678697-44678709	GUF1	HGNC:25799	ENSG00000151806	GGUGGCCCCGGGG
hsa_m5C_958	chr2	221568749	221568750	-	ENST00000281821	C183	m5C	C8	5'-GGGAGAACUUGGGUGGAUAGCAAGCCCUCUGGAAGGAGGG^UGGG-3'	.......((((.........))))((((((....)))))).... (-11.60)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	44	chr2:221564391-221564394;221568718-221568757	EPHA4	HGNC:3388	ENSG00000116106	GGGAGAACUUGGGUGGAUAGCAAGCCCUCUGGAAGGAGGGUGGG
hsa_m5C_959	chr12	116277243	116277244	-	ENST00000281928	C450	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	11	chr12:116277242-116277252	MED13L	HGNC:22962	ENSG00000123066	GGCGGCGGCGG
hsa_m5C_960	chr19	57358622	57358623	+	ENST00000282286	C3148	m5C	C7	5'-GGGGACCAAAGGAUGG-3'	.....(((.....))) ( -0.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr19:57358617-57358632	ZNF304	HGNC:13505	ENSG00000131845	GGGGACCAAAGGAUGG
hsa_m5C_961	chr2	43224822	43224823	-	ENST00000282388	C1272	m5C	C7	5'-GGCGGCCGCGGCUGCGG-3'	.(((((....))))).. ( -8.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr2:43224813-43224829	ZFP36L2	HGNC:1108	ENSG00000152518	GGCGGCCGCGGCUGCGG
hsa_m5C_962	chr2	43224820	43224821	-	ENST00000282388	C1274	m5C	C9	5'-GGCGGCCGCGGCUGCGG-3'	.(((((....))))).. ( -8.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr2:43224813-43224829	ZFP36L2	HGNC:1108	ENSG00000152518	GGCGGCCGCGGCUGCGG
hsa_m5C_963	chr2	43224814	43224815	-	ENST00000282388	C1280	m5C	C15	5'-GGCGGCCGCGGCUGCGG-3'	.(((((....))))).. ( -8.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr2:43224813-43224829	ZFP36L2	HGNC:1108	ENSG00000152518	GGCGGCCGCGGCUGCGG
hsa_m5C_964	chr10	50068217	50068218	+	ENST00000282633	C169	m5C	C14	5'-GGUCGCUGGCGGCCGACGCGG-3'	(((((....)))))....... ( -6.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr10:50068205-50068225	WASHC2A	HGNC:23416	ENSG00000099290	GGUCGCUGGCGGCCGACGCGG
hsa_m5C_965	chr5	1463383	1463384	-	ENST00000283415	C1988	m5C	C22	5'-GGGGUCAGGUUCCCUGCCGGGCGGGGGG-3'	..........(((((((...))))))). (-10.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	28	chr5:1463378-1463405	LPCAT1	HGNC:25718	ENSG00000153395	GGGGUCAGGUUCCCUGCCGGGCGGGGGG
hsa_m5C_966	chr7	27170920	27170921	-	ENST00000283921	C2225	m5C	C7	5'-GGAGGACUGGGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	12	chr7:27170916-27170927	HOXA10	HGNC:5100	ENSG00000253293	GGAGGACUGGGG
hsa_m5C_967	chr17	56861873	56861874	+	ENST00000284061	C1496	m5C	C13	5'-GGGCGGUGGCUGCAGACUAUGGGAAGGGAUGGGG-3'	..((((...))))...((((........)))).. ( -4.70)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	34	chr17:56861862-56861895	DGKE	HGNC:2852	ENSG00000153933	GGGCGGUGGCUGCAGACUAUGGGAAGGGAUGGGG
hsa_m5C_968	chr16	87689647	87689648	+	ENST00000284262	C1927	m5C	C12	5'-GGGAAAACG^GGCUGGAGUACCAGAGG-3'	...........((((....))))... ( -4.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr16:87684258-87684266;87689646-87689662	JPH3	HGNC:14203	ENSG00000154118	GGGAAAACGGGCUGGAGUACCAGAGG
hsa_m5C_969	chr4	185535495	185535496	-	ENST00000284767	C12	m5C	C11	5'-GGACGCCGCCCGGCGCGGAGUGG-3'	..((.((((.....)))).)).. ( -7.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr4:185535484-185535506	PDLIM3	HGNC:20767	ENSG00000154553	GGACGCCGCCCGGCGCGGAGUGG
hsa_m5C_970	chr21	26837523	26837524	-	ENST00000284984	C3414	m5C	C24	5'-GGCAAAGUGAGGAAGGGCUGGUGCAGGG-3'	.(((.(((........)))..))).... ( -4.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	28	chr21:26837520-26837547	ADAMTS1	HGNC:217	ENSG00000154734	GGCAAAGUGAGGAAGGGCUGGUGCAGGG
hsa_m5C_971	chr18	49902638	49902639	-	ENST00000285039	C3120	m5C	C3	5'-GGCAUGGAGAACAAGGUGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr18:49902623-49902641	MYO5B	HGNC:7603	ENSG00000167306	GGCAUGGAGAACAAGGUGG
hsa_m5C_972	chr18	50194821	50194822	-	ENST00000285039	C326	m5C	C16	5'-GGGGCAGCCAGGAGCCGG-3'	..(((........))).. ( -4.30)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr18:50194820-50194837	MYO5B	HGNC:7603	ENSG00000167306	GGGGCAGCCAGGAGCCGG
hsa_m5C_973	chr17	17223960	17223961	-	ENST00000285071	C1063	m5C	C10	5'-GGGGAAGGUCCGG-3'	(((.....))).. ( -1.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	13	chr17:17223958-17223970	FLCN	HGNC:27310	ENSG00000154803	GGGGAAGGUCCGG
hsa_m5C_974	chr17	9645643	9645644	+	ENST00000285199	C128	m5C	C10	5'-GGACCUGGGCCCCGGGGACGCGG-3'	...(((((...)))))....... ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr17:9645635-9645657	USP43	HGNC:20072	ENSG00000154914	GGACCUGGGCCCCGGGGACGCGG
hsa_m5C_975	chr17	50691101	50691102	+	ENST00000285238	C4542	m5C	C11	5'-GGUCCUGGUCCUGGACAAAGG-3'	.((((.......))))..... ( -5.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	21	chr17:50691092-50691112	ABCC3	HGNC:54	ENSG00000108846	GGUCCUGGUCCUGGACAAAGG
hsa_m5C_976	chr17	50707681	50707682	-	ENST00000285243	C233	m5C	C19	5'-GGGGCGGGGCAGGCGGGCCUGGGCGGGGG-3'	...((.((((......))))..))..... ( -7.90)	bulge	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	29	chr17:50707672-50707700	ANKRD40	HGNC:28233	ENSG00000154945	GGGGCGGGGCAGGCGGGCCUGGGCGGGGG
hsa_m5C_977	chr10	97714431	97714432	+	ENST00000285605	C703	m5C	C15	5'-GGCCCCGAUCGGGGCGGGGGAAUCCCCGG-3'	.(((((....)))))((((....)))).. (-18.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr10:97714418-97714446	MARVELD1	HGNC:28674	ENSG00000155254	GGCCCCGAUCGGGGCGGGGGAAUCCCCGG
hsa_m5C_978	chr5	154907619	154907620	-	ENST00000285873	C2444	m5C	C22	5'-GGGAGGAGCAAGCACGGGAGCCGG-3'	..............(((...))). ( -1.90)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr5:154907618-154907641	GEMIN5	HGNC:20043	ENSG00000082516	GGGAGGAGCAAGCACGGGAGCCGG
hsa_m5C_979	chr7	149005269	149005270	-	ENST00000286091	C1650	m5C	C16	5'-GGGGAGGUGAAGGACCUGG-3'	....((((.....)))).. ( -4.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	19	chr7:149005267-149005285	PDIA4	HGNC:30167	ENSG00000155660	GGGGAGGUGAAGGACCUGG
hsa_m5C_980	chr5	157756931	157756932	+	ENST00000286307	C2790	m5C	C7	5'-GGGAGGCUGAGGCGGGUGGAUCACAAG-3'	((...(((......)))...))..... ( -2.10)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	27	chr5:157756926-157756952	LSM11	HGNC:30860	ENSG00000155858	GGGAGGCUGAGGCGGGUGGAUCACAAG
hsa_m5C_981	chr5	157756937	157756938	+	ENST00000286307	C2796	m5C	C13	5'-GGGAGGCUGAGGCGGGUGGAUCACAAG-3'	((...(((......)))...))..... ( -2.10)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	27	chr5:157756926-157756952	LSM11	HGNC:30860	ENSG00000155858	GGGAGGCUGAGGCGGGUGGAUCACAAG
hsa_m5C_982	chr14	73946559	73946560	-	ENST00000286544	C168	m5C	C14	5'-GGCAGGAGAGGAGCUG-3'	..(((........))) ( -1.10)	bulge	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr14:73946558-73946573	FAM161B	HGNC:19854	ENSG00000156050	GGCAGGAGAGGAGCUG
hsa_m5C_983	chr14	73933778	73933779	-	ENST00000286544	C2489	m5C	C10	5'-GGGGAGGCUCAGGUGGAGG-3'	(((....)))......... ( -1.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr14:73933770-73933788	FAM161B	HGNC:19854	ENSG00000156050	GGGGAGGCUCAGGUGGAGG
hsa_m5C_984	chr8	95246241	95246242	-	ENST00000286688	C2011	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr8:95246233-95246247	CFAP418	HGNC:27232	ENSG00000156172	GGAGGCUGAGGCAGG
hsa_m5C_985	chr8	95246235	95246236	-	ENST00000286688	C2017	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr8:95246233-95246247	CFAP418	HGNC:27232	ENSG00000156172	GGAGGCUGAGGCAGG
hsa_m5C_986	chr15	82809901	82809902	+	ENST00000286760	C275	m5C	C6	5'-GGGGGCCCGGUUGGGG-3'	.....(((....))). ( -3.90)	loop	mRNA	293T;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	16	chr15:82809897-82809912	WHAMM	HGNC:30493	ENSG00000156232	GGGGGCCCGGUUGGGG
hsa_m5C_987	chr15	82809902	82809903	+	ENST00000286760	C276	m5C	C7	5'-GGGGGCCCGGUUGGGG-3'	.....(((....))). ( -3.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	16	chr15:82809897-82809912	WHAMM	HGNC:30493	ENSG00000156232	GGGGGCCCGGUUGGGG
hsa_m5C_988	chr15	82809903	82809904	+	ENST00000286760	C277	m5C	C8	5'-GGGGGCCCGGUUGGGG-3'	.....(((....))). ( -3.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	16	chr15:82809897-82809912	WHAMM	HGNC:30493	ENSG00000156232	GGGGGCCCGGUUGGGG
hsa_m5C_989	chr14	102509652	102509653	-	ENST00000286918	C124	m5C	C3	5'-GGCGGCGGUGG-3'	NA	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr14:102509645-102509655	ANKRD9	HGNC:20096	ENSG00000156381	GGCGGCGGUGG
hsa_m5C_990	chr14	102509649	102509650	-	ENST00000286918	C127	m5C	C6	5'-GGCGGCGGUGG-3'	NA	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr14:102509645-102509655	ANKRD9	HGNC:20096	ENSG00000156381	GGCGGCGGUGG
hsa_m5C_991	chr14	102505193	102505194	-	ENST00000286918	C3278	m5C	C12	5'-GGGGCUGGGCCCGGGGAGCCCAUGGG-3'	.((((...))))(((...)))..... ( -8.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	26	chr14:102505180-102505205	ANKRD9	HGNC:20096	ENSG00000156381	GGGGCUGGGCCCGGGGAGCCCAUGGG
hsa_m5C_992	chr10	70146122	70146123	-	ENST00000287078	C578	m5C	C11	5'-GGGGACGAGGCAGCGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr10:70146118-70146133	TYSND1	HGNC:28531	ENSG00000156521	GGGGACGAGGCAGCGG
hsa_m5C_993	chr7	151876976	151876977	-	ENST00000287878	C139	m5C	C7	5'-GGGAAUCUGUGGGAGGAGCCGAGAGG-3'	.....(((.(((......)))))).. ( -3.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr7:151876958-151876983	PRKAG2	HGNC:9386	ENSG00000106617	GGGAAUCUGUGGGAGGAGCCGAGAGG
hsa_m5C_994	chr7	91264625	91264626	+	ENST00000287934	C194	m5C	C4	5'-GGCCAGGAAGGCGGG-3'	.(((.....)))... ( -4.10)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr7:91264623-91264637	FZD1	HGNC:4038	ENSG00000157240	GGCCAGGAAGGCGGG
hsa_m5C_995	chr7	92458041	92458042	+	ENST00000287957	C2538	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr7:92458031-92458045	GATAD1	HGNC:29941	ENSG00000157259	GGAGGCUGAGGCAGG
hsa_m5C_996	chr16	69328197	69328198	-	ENST00000288022	C1574	m5C	C8	5'-GGGAGGGCGGGGCGGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	16	chr16:69328190-69328205	PDF	HGNC:30012	ENSG00000258429	GGGAGGGCGGGGCGGG
hsa_m5C_997	chr15	59161196	59161197	-	ENST00000288235	C3032	m5C	C5	5'-GGGGCCCCUGGAGUGCAGGGGGCUCCCGG-3'	(((((((((........)))))).))).. (-18.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr15:59161173-59161201	MYO1E	HGNC:7599	ENSG00000157483	GGGGCCCCUGGAGUGCAGGGGGCUCCCGG
hsa_m5C_998	chr15	59161195	59161196	-	ENST00000288235	C3033	m5C	C6	5'-GGGGCCCCUGGAGUGCAGGGGGCUCCCGG-3'	(((((((((........)))))).))).. (-18.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr15:59161173-59161201	MYO1E	HGNC:7599	ENSG00000157483	GGGGCCCCUGGAGUGCAGGGGGCUCCCGG
hsa_m5C_999	chr7	1570017	1570018	-	ENST00000288607	C15	m5C	C8	5'-GGCGCGGCGCCGGCUUGG-3'	((((...))))....... ( -5.40)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr7:1570008-1570025	PSMG3	HGNC:22420	ENSG00000157778	GGCGCGGCGCCGGCUUGG
hsa_m5C_1000	chr2	152335495	152335496	+	ENST00000288670	C323	m5C	C23	5'-GGGCGCGGCGGAGGGCGGGGAGCCGGG-3'	.(((...((.....)).....)))... ( -6.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	27	chr2:152335474-152335500	FMNL2	HGNC:18267	ENSG00000157827	GGGCGCGGCGGAGGGCGGGGAGCCGGG
hsa_m5C_1001	chr8	143368902	143368903	+	ENST00000289013	C28	m5C	C8	5'-GGUGGUGCGGGCGG-3'	NA	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database	28418038	14	chr8:143368896-143368909	RHPN1	HGNC:19973	ENSG00000158106	GGUGGUGCGGGCGG
hsa_m5C_1002	chr2	97663905	97663906	-	ENST00000289228	C139	m5C	C9	5'-GGGCAGGGCCGGCGCGG-3'	.(((...)))....... ( -2.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr2:97663898-97663914	ACTR1B	HGNC:168	ENSG00000115073	GGGCAGGGCCGGCGCGG
hsa_m5C_1003	chr2	97663904	97663905	-	ENST00000289228	C140	m5C	C10	5'-GGGCAGGGCCGGCGCGG-3'	.(((...)))....... ( -2.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr2:97663898-97663914	ACTR1B	HGNC:168	ENSG00000115073	GGGCAGGGCCGGCGCGG
hsa_m5C_1004	chr2	101253122	101253123	+	ENST00000289382	C238	m5C	C18	5'-GGGUCCGGGAGCGGAGGCCCGGGGGGCCCCGCGGG-3'	..........((((.(((((...)))))))))... (-17.90)	loop	mRNA	HeLa,rip antibody: ALYREF;Testis;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	35	chr2:101253106-101253140	CNOT11	HGNC:25217	ENSG00000158435	GGGUCCGGGAGCGGAGGCCCGGGGGGCCCCGCGGG
hsa_m5C_1005	chr2	101253123	101253124	+	ENST00000289382	C239	m5C	C19	5'-GGGUCCGGGAGCGGAGGCCCGGGGGGCCCCGCGGG-3'	..........((((.(((((...)))))))))... (-17.90)	loop	mRNA	HeLa,rip antibody: ALYREF;Testis;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	35	chr2:101253106-101253140	CNOT11	HGNC:25217	ENSG00000158435	GGGUCCGGGAGCGGAGGCCCGGGGGGCCCCGCGGG
hsa_m5C_1006	chr2	101253124	101253125	+	ENST00000289382	C240	m5C	C20	5'-GGGUCCGGGAGCGGAGGCCCGGGGGGCCCCGCGGG-3'	..........((((.(((((...)))))))))... (-17.90)	loop	mRNA	Testis;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	22344696	35	chr2:101253106-101253140	CNOT11	HGNC:25217	ENSG00000158435	GGGUCCGGGAGCGGAGGCCCGGGGGGCCCCGCGGG
hsa_m5C_1007	chr2	101253131	101253132	+	ENST00000289382	C247	m5C	C27	5'-GGGUCCGGGAGCGGAGGCCCGGGGGGCCCCGCGGG-3'	..........((((.(((((...)))))))))... (-17.90)	loop	mRNA	HeLa,rip antibody: ALYREF;Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	35	chr2:101253106-101253140	CNOT11	HGNC:25217	ENSG00000158435	GGGUCCGGGAGCGGAGGCCCGGGGGGCCCCGCGGG
hsa_m5C_1008	chr2	101253132	101253133	+	ENST00000289382	C248	m5C	C28	5'-GGGUCCGGGAGCGGAGGCCCGGGGGGCCCCGCGGG-3'	..........((((.(((((...)))))))))... (-17.90)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	35	chr2:101253106-101253140	CNOT11	HGNC:25217	ENSG00000158435	GGGUCCGGGAGCGGAGGCCCGGGGGGCCCCGCGGG
hsa_m5C_1009	chr16	89697552	89697553	-	ENST00000289805	C1135	m5C	C17	5'-GGUCUGUCUCGGAGCCCCCAGGCUACCAGG-3'	(((..((((.((....)).)))).)))... ( -9.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr16:89697540-89697569	SPATA2L	HGNC:28393	ENSG00000158792	GGUCUGUCUCGGAGCCCCCAGGCUACCAGG
hsa_m5C_1010	chr8	22102626	22102627	+	ENST00000289921	C2196	m5C	C20	5'-GGGCCAGGCUCCUGGGGAGCA^GCUGG-3'	...(((((((((...)))))..)))) (-10.70)	bulge	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr8:22102608-22102628;22102793-22102797	FHIP2B	HGNC:16492	ENSG00000158863	GGGCCAGGCUCCUGGGGAGCAGCUGG
hsa_m5C_1011	chr8	22601789	22601790	+	ENST00000289989	C717	m5C	C5	5'-GGUGCUGGAGCAGAUGGCAAGG-3'	..(((((.......)))))... ( -2.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr8:22601786-22601807	C8orf58	HGNC:32233	ENSG00000241852	GGUGCUGGAGCAGAUGGCAAGG
hsa_m5C_1012	chr8	22601795	22601796	+	ENST00000289989	C723	m5C	C11	5'-GGUGCUGGAGCAGAUGGCAAGG-3'	..(((((.......)))))... ( -2.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr8:22601786-22601807	C8orf58	HGNC:32233	ENSG00000241852	GGUGCUGGAGCAGAUGGCAAGG
hsa_m5C_1013	chr1	22007508	22007509	+	ENST00000290122	C654	m5C	C3	5'-GGCUGCAAC^GGUGACUCUGGAGG-3'	........(((.....))).... ( -1.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr1:22007507-22007515;22009705-22009718	CELA3A	HGNC:15944	ENSG00000142789	GGCUGCAACGGUGACUCUGGAGG
hsa_m5C_1014	chr1	22007511	22007512	+	ENST00000290122	C657	m5C	C6	5'-GGCUGCAAC^GGUGACUCUGGAGG-3'	........(((.....))).... ( -1.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr1:22007507-22007515;22009705-22009718	CELA3A	HGNC:15944	ENSG00000142789	GGCUGCAACGGUGACUCUGGAGG
hsa_m5C_1015	chr1	22007514	22007515	+	ENST00000290122	C660	m5C	C9	5'-GGCUGCAAC^GGUGACUCUGGAGG-3'	........(((.....))).... ( -1.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr1:22007507-22007515;22009705-22009718	CELA3A	HGNC:15944	ENSG00000142789	GGCUGCAACGGUGACUCUGGAGG
hsa_m5C_1016	chr1	22009709	22009710	+	ENST00000290122	C666	m5C	C15	5'-GGCUGCAAC^GGUGACUCUGGAGG-3'	........(((.....))).... ( -1.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr1:22007507-22007515;22009705-22009718	CELA3A	HGNC:15944	ENSG00000142789	GGCUGCAACGGUGACUCUGGAGG
hsa_m5C_1017	chr1	22009711	22009712	+	ENST00000290122	C668	m5C	C17	5'-GGCUGCAAC^GGUGACUCUGGAGG-3'	........(((.....))).... ( -1.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr1:22007507-22007515;22009705-22009718	CELA3A	HGNC:15944	ENSG00000142789	GGCUGCAACGGUGACUCUGGAGG
hsa_m5C_1018	chr8	23843540	23843541	-	ENST00000290271	C2256	m5C	C14	5'-GGUGCCUGGUACUCUGGCAAAUGAUGAUGG-3'	..((((.........))))........... ( -4.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr8:23843525-23843554	STC1	HGNC:11373	ENSG00000159167	GGUGCCUGGUACUCUGGCAAAUGAUGAUGG
hsa_m5C_1019	chr17	49053603	49053604	+	ENST00000290341	C6255	m5C	C4	5'-GGCCUGGCAGACGGGCAGUGAGG-3'	.(((((.....)))))....... ( -8.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr17:49053601-49053623	IGF2BP1	HGNC:28866	ENSG00000159217	GGCCUGGCAGACGGGCAGUGAGG
hsa_m5C_1020	chr17	49053607	49053608	+	ENST00000290341	C6259	m5C	C8	5'-GGCCUGGCAGACGGGCAGUGAGG-3'	.(((((.....)))))....... ( -8.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr17:49053601-49053623	IGF2BP1	HGNC:28866	ENSG00000159217	GGCCUGGCAGACGGGCAGUGAGG
hsa_m5C_1021	chr17	49053611	49053612	+	ENST00000290341	C6263	m5C	C12	5'-GGCCUGGCAGACGGGCAGUGAGG-3'	.(((((.....)))))....... ( -8.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr17:49053601-49053623	IGF2BP1	HGNC:28866	ENSG00000159217	GGCCUGGCAGACGGGCAGUGAGG
hsa_m5C_1022	chr17	49053615	49053616	+	ENST00000290341	C6267	m5C	C16	5'-GGCCUGGCAGACGGGCAGUGAGG-3'	.(((((.....)))))....... ( -8.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr17:49053601-49053623	IGF2BP1	HGNC:28866	ENSG00000159217	GGCCUGGCAGACGGGCAGUGAGG
hsa_m5C_1023	chr16	57092738	57092739	+	ENST00000290776	C157	m5C	C23	5'-GGGAUGCCCGGGCGGCUCGGAGCGCGGG-3'	......((((.((........)).)))) (-11.60)	loop	mRNA	HeLa	m5C-RIP-seq:(Medium)	pqsfinder&qgrs:(Low)	RMBase database	NA	28	chr16:57092717-57092744	CPNE2	HGNC:2315	ENSG00000140848	GGGAUGCCCGGGCGGCUCGGAGCGCGGG
hsa_m5C_1024	chr4	2274175	2274176	-	ENST00000290974	C2414	m5C	C5	5'-GGGGCCAGAGGCGG-3'	...(((...))).. ( -2.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	14	chr4:2274167-2274180	ZFYVE28	HGNC:29334	ENSG00000159733	GGGGCCAGAGGCGG
hsa_m5C_1025	chr4	2274174	2274175	-	ENST00000290974	C2415	m5C	C6	5'-GGGGCCAGAGGCGG-3'	...(((...))).. ( -2.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	14	chr4:2274167-2274180	ZFYVE28	HGNC:29334	ENSG00000159733	GGGGCCAGAGGCGG
hsa_m5C_1026	chr19	46716421	46716422	-	ENST00000291281	C693	m5C	C6	5'-GGGCCCCCCGGCCGGGUCCCGGGUGGG-3'	......((((.((((...)))).)))) (-13.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr19:46716401-46716427	PRKD2	HGNC:17293	ENSG00000105287	GGGCCCCCCGGCCGGGUCCCGGGUGGG
hsa_m5C_1027	chr19	46716409	46716410	-	ENST00000291281	C705	m5C	C18	5'-GGGCCCCCCGGCCGGGUCCCGGGUGGG-3'	......((((.((((...)))).)))) (-13.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr19:46716401-46716427	PRKD2	HGNC:17293	ENSG00000105287	GGGCCCCCCGGCCGGGUCCCGGGUGGG
hsa_m5C_1028	chr19	46716408	46716409	-	ENST00000291281	C706	m5C	C19	5'-GGGCCCCCCGGCCGGGUCCCGGGUGGG-3'	......((((.((((...)))).)))) (-13.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr19:46716401-46716427	PRKD2	HGNC:17293	ENSG00000105287	GGGCCCCCCGGCCGGGUCCCGGGUGGG
hsa_m5C_1029	chr19	46716407	46716408	-	ENST00000291281	C707	m5C	C20	5'-GGGCCCCCCGGCCGGGUCCCGGGUGGG-3'	......((((.((((...)))).)))) (-13.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr19:46716401-46716427	PRKD2	HGNC:17293	ENSG00000105287	GGGCCCCCCGGCCGGGUCCCGGGUGGG
hsa_m5C_1030	chr1	33145879	33145880	-	ENST00000291416	C3336	m5C	C7	5'-GGGAGUCUGGGAAAUGUCAUUUCCCUAGAAGGAAGUUAGGGUGGG-3'	.....((((((((((...))))))).)))................ ( -9.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	45	chr1:33145842-33145886	TRIM62	HGNC:25574	ENSG00000116525	GGGAGUCUGGGAAAUGUCAUUUCCCUAGAAGGAAGUUAGGGUGGG
hsa_m5C_1031	chr19	16234523	16234524	+	ENST00000291439	C1477	m5C	C10	5'-GGAGGGGCCCUCCCUGG-3'	(((((...))))).... ( -6.50)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr19:16234515-16234531	AP1M1	HGNC:13667	ENSG00000072958	GGAGGGGCCCUCCCUGG
hsa_m5C_1032	chr19	17245511	17245512	-	ENST00000291442	C408	m5C	C12	5'-GGGCCCCAGGGCGGCGGGACGCGAGUCCUCUGGG-3'	....(((((((.(((.........)))))))))) (-14.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	34	chr19:17245490-17245523	NR2F6	HGNC:7977	ENSG00000160113	GGGCCCCAGGGCGGCGGGACGCGAGUCCUCUGGG
hsa_m5C_1033	chr19	17245289	17245290	-	ENST00000291442	C630	m5C	C6	5'-GGGUCCCCCGGGCCGAGAGGGGUGCCCGGAGGG-3'	....(((((((((..........)))))).))) (-16.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	33	chr19:17245263-17245295	NR2F6	HGNC:7977	ENSG00000160113	GGGUCCCCCGGGCCGAGAGGGGUGCCCGGAGGG
hsa_m5C_1034	chr19	17245287	17245288	-	ENST00000291442	C632	m5C	C8	5'-GGGUCCCCCGGGCCGAGAGGGGUGCCCGGAGGG-3'	....(((((((((..........)))))).))) (-16.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	33	chr19:17245263-17245295	NR2F6	HGNC:7977	ENSG00000160113	GGGUCCCCCGGGCCGAGAGGGGUGCCCGGAGGG
hsa_m5C_1035	chr19	17245286	17245287	-	ENST00000291442	C633	m5C	C9	5'-GGGUCCCCCGGGCCGAGAGGGGUGCCCGGAGGG-3'	....(((((((((..........)))))).))) (-16.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	33	chr19:17245263-17245295	NR2F6	HGNC:7977	ENSG00000160113	GGGUCCCCCGGGCCGAGAGGGGUGCCCGGAGGG
hsa_m5C_1036	chr21	42653769	42653770	+	ENST00000291539	C150	m5C	C13	5'-GGCGGCUGGCGUCGG-3'	((((.....)))).. ( -4.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr21:42653758-42653772	PDE9A	HGNC:8795	ENSG00000160191	GGCGGCUGGCGUCGG
hsa_m5C_1037	chr21	43758566	43758567	+	ENST00000291565	C3609	m5C	C3	5'-GGCAGAGGCCCCUGGUGG-3'	(((....)))((....)) ( -3.40)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr21:43758565-43758582	PDXK	HGNC:8819	ENSG00000160209	GGCAGAGGCCCCUGGUGG
hsa_m5C_1038	chr21	43758132	43758133	+	ENST00000291565	C3175	m5C	C9	5'-GGGUGUUACGGGCGGUGUGCCCUGG-3'	.........((((.....))))... ( -7.20)	loop	mRNA	293T;HeLa,siControl;Testis;Testis,HeLa;HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	28418038;31061524;38168991	25	chr21:43758125-43758149	PDXK	HGNC:8819	ENSG00000160209	GGGUGUUACGGGCGGUGUGCCCUGG
hsa_m5C_1039	chr21	44063716	44063717	+	ENST00000291574	C1155	m5C	C3	5'-GGCCGUGGGAGGUGG-3'	.(((......))).. ( -3.00)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr21:44063715-44063729	TRAPPC10	HGNC:11868	ENSG00000160218	GGCCGUGGGAGGUGG
hsa_m5C_1040	chr21	44130984	44130985	+	ENST00000291576	C2992	m5C	C10	5'-GGCACCUGGCCCCAGGAGCGGGG-3'	.((.((((....)))).)).... ( -7.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;22344696	23	chr21:44130976-44130998	PWP2	HGNC:9711	ENSG00000241945	GGCACCUGGCCCCAGGAGCGGGG
hsa_m5C_1041	chr21	44130985	44130986	+	ENST00000291576	C2993	m5C	C11	5'-GGCACCUGGCCCCAGGAGCGGGG-3'	.((.((((....)))).)).... ( -7.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr21:44130976-44130998	PWP2	HGNC:9711	ENSG00000241945	GGCACCUGGCCCCAGGAGCGGGG
hsa_m5C_1042	chr21	44130986	44130987	+	ENST00000291576	C2994	m5C	C12	5'-GGCACCUGGCCCCAGGAGCGGGG-3'	.((.((((....)))).)).... ( -7.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr21:44130976-44130998	PWP2	HGNC:9711	ENSG00000241945	GGCACCUGGCCCCAGGAGCGGGG
hsa_m5C_1043	chr21	44130987	44130988	+	ENST00000291576	C2995	m5C	C13	5'-GGCACCUGGCCCCAGGAGCGGGG-3'	.((.((((....)))).)).... ( -7.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr21:44130976-44130998	PWP2	HGNC:9711	ENSG00000241945	GGCACCUGGCCCCAGGAGCGGGG
hsa_m5C_1044	chr21	46261307	46261308	-	ENST00000291688	C3764	m5C	C5	5'-GGAGCAGGAGAGGCAGCGG-3'	...((.......))..... ( -0.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	19	chr21:46261294-46261312	MCM3AP	HGNC:6946	ENSG00000160294	GGAGCAGGAGAGGCAGCGG
hsa_m5C_1045	chr1	154558631	154558632	-	ENST00000292211	C31	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	11	chr1:154558624-154558634	UBE2Q1	HGNC:15698	ENSG00000160714	GGCGGCGGCGG
hsa_m5C_1046	chr1	154558320	154558321	-	ENST00000292211	C342	m5C	C5	5'-GGGGCCGGAGGGGCCGGGGCGGGG-3'	..((((.....))))......... ( -8.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold;rG4-seq:(High)	RMVar database	28418038	24	chr1:154558302-154558325	UBE2Q1	HGNC:15698	ENSG00000160714	GGGGCCGGAGGGGCCGGGGCGGGG
hsa_m5C_1047	chr1	154558310	154558311	-	ENST00000292211	C352	m5C	C15	5'-GGGGCCGGAGGGGCCGGGGCGGGG-3'	..((((.....))))......... ( -8.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMVar database	28418038	24	chr1:154558302-154558325	UBE2Q1	HGNC:15698	ENSG00000160714	GGGGCCGGAGGGGCCGGGGCGGGG
hsa_m5C_1048	chr19	647641	647642	-	ENST00000292363	C1515	m5C	C15	5'-GGAGUAGGGGGGCUCGGG-3'	.((((......))))... ( -3.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	18	chr19:647639-647656	RNF126	HGNC:21151	ENSG00000070423	GGAGUAGGGGGGCUCGGG
hsa_m5C_1049	chr19	649706	649707	-	ENST00000292363	C641	m5C	C5	5'-GGGGCCAACGGCCUGG-3'	.(((((...))))).. ( -5.60)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	16	chr19:649696-649711	RNF126	HGNC:21151	ENSG00000070423	GGGGCCAACGGCCUGG
hsa_m5C_1050	chr19	649705	649706	-	ENST00000292363	C642	m5C	C6	5'-GGGGCCAACGGCCUGG-3'	.(((((...))))).. ( -5.60)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	16	chr19:649696-649711	RNF126	HGNC:21151	ENSG00000070423	GGGGCCAACGGCCUGG
hsa_m5C_1051	chr7	100170428	100170429	-	ENST00000292377	C1723	m5C	C7	5'-GGAUGGCUGGGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	12	chr7:100170424-100170435	GPC2	HGNC:4450	ENSG00000213420	GGAUGGCUGGGG
hsa_m5C_1052	chr7	100057321	100057322	+	ENST00000292450	C480	m5C	C20	5'-GGAGCUCCAGGCCUGGGUGCAGG-3'	((....))...((((....)))) ( -5.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr7:100057303-100057325	ZSCAN21	HGNC:13104	ENSG00000166529	GGAGCUCCAGGCCUGGGUGCAGG
hsa_m5C_1053	chr7	99438961	99438962	+	ENST00000292476	C20	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969;22344696	11	chr7:99438954-99438964	CPSF4	HGNC:2327	ENSG00000160917	GGCGGCGGCGG
hsa_m5C_1054	chr7	99456877	99456878	+	ENST00000292476	C1328	m5C	C5	5'-GGGGCUGGUAGG-3'	NA	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	12	chr7:99456874-99456885	CPSF4	HGNC:2327	ENSG00000160917	GGGGCUGGUAGG
hsa_m5C_1055	chr7	102457081	102457082	-	ENST00000292566	C1248	m5C	C7	5'-GGGAGGCUGAGGUGGGCGG-3'	.....(((......))).. ( -2.80)	loop	mRNA	liver	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	19	chr7:102457070-102457088	ALKBH4	HGNC:21900	ENSG00000160993	GGGAGGCUGAGGUGGGCGG
hsa_m5C_1056	chr7	102457071	102457072	-	ENST00000292566	C1258	m5C	C17	5'-GGGAGGCUGAGGUGGGCGG-3'	.....(((......))).. ( -2.80)	loop	mRNA	HeLa,rip antibody: ALYREF;liver	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	19	chr7:102457070-102457088	ALKBH4	HGNC:21900	ENSG00000160993	GGGAGGCUGAGGUGGGCGG
hsa_m5C_1057	chr5	179733076	179733077	+	ENST00000292599	C256	m5C	C3	5'-GGCCCGGCCCCGGGCCCGG-3'	((((((....))))))... (-12.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr5:179733075-179733093	MAML1	HGNC:13632	ENSG00000161021	GGCCCGGCCCCGGGCCCGG
hsa_m5C_1058	chr5	179733077	179733078	+	ENST00000292599	C257	m5C	C4	5'-GGCCCGGCCCCGGGCCCGG-3'	((((((....))))))... (-12.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr5:179733075-179733093	MAML1	HGNC:13632	ENSG00000161021	GGCCCGGCCCCGGGCCCGG
hsa_m5C_1059	chr5	179733083	179733084	+	ENST00000292599	C263	m5C	C10	5'-GGCCCGGCCCCGGGCCCGG-3'	((((((....))))))... (-12.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr5:179733075-179733093	MAML1	HGNC:13632	ENSG00000161021	GGCCCGGCCCCGGGCCCGG
hsa_m5C_1060	chr5	179732887	179732888	+	ENST00000292599	C67	m5C	C11	5'-GGGGCCGGGGCGGUGGGGAGAGG-3'	...((((...))))......... ( -3.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	23	chr5:179732878-179732900	MAML1	HGNC:13632	ENSG00000161021	GGGGCCGGGGCGGUGGGGAGAGG
hsa_m5C_1061	chr19	38975694	38975695	-	ENST00000292852	C48	m5C	C5	5'-GGUCCCGGGGCCCCCUGG-3'	....(((((....))))) ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr19:38975682-38975699	FBXO17	HGNC:18754	ENSG00000269190	GGUCCCGGGGCCCCCUGG
hsa_m5C_1062	chr19	38975688	38975689	-	ENST00000292852	C54	m5C	C11	5'-GGUCCCGGGGCCCCCUGG-3'	....(((((....))))) ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr19:38975682-38975699	FBXO17	HGNC:18754	ENSG00000269190	GGUCCCGGGGCCCCCUGG
hsa_m5C_1063	chr19	38975687	38975688	-	ENST00000292852	C55	m5C	C12	5'-GGUCCCGGGGCCCCCUGG-3'	....(((((....))))) ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr19:38975682-38975699	FBXO17	HGNC:18754	ENSG00000269190	GGUCCCGGGGCCCCCUGG
hsa_m5C_1064	chr19	49464130	49464131	+	ENST00000293350	C1306	m5C	C12	5'-GGUGGAG^GUGCCGUGG-3'	((((....)))).... ( -2.70)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	16	chr19:49463943-49463949;49464127-49464135	ALDH16A1	HGNC:28114	ENSG00000161618	GGUGGAGGUGCCGUGG
hsa_m5C_1065	chr6	33771954	33771955	-	ENST00000293760	C2199	m5C	C4	5'-GGGCAGCCCCAGGGCGGGCGGG-3'	..((.(((....)))..))... ( -7.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	22	chr6:33771937-33771958	LEMD2	HGNC:21244	ENSG00000161904	GGGCAGCCCCAGGGCGGGCGGG
hsa_m5C_1066	chr17	4739332	4739333	-	ENST00000293778	C596	m5C	C5	5'-GGGACGGGACUUGCGGCCCGG-3'	(((.((.......)).))).. ( -6.40)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	21	chr17:4739317-4739337	CXCL16	HGNC:16642	ENSG00000161921	GGGACGGGACUUGCGGCCCGG
hsa_m5C_1067	chr16	47426	47427	-	ENST00000293860	C352	m5C	C14	5'-GGAGGGAUUAGGGCCAGG-3'	...((........))... ( -1.50)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	18	chr16:47423-47440	POLR3K	HGNC:14121	ENSG00000161980	GGAGGGAUUAGGGCCAGG
hsa_m5C_1068	chr16	47425	47426	-	ENST00000293860	C353	m5C	C15	5'-GGAGGGAUUAGGGCCAGG-3'	...((........))... ( -1.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	18	chr16:47423-47440	POLR3K	HGNC:14121	ENSG00000161980	GGAGGGAUUAGGGCCAGG
hsa_m5C_1069	chr16	3966305	3966306	-	ENST00000294016	C4327	m5C	C13	5'-GGCCGGGGUCAUCGG-3'	..((((.....)))) ( -2.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr16:3966304-3966318	ADCY9	HGNC:240	ENSG00000162104	GGCCGGGGUCAUCGG
hsa_m5C_1070	chr16	3965468	3965469	-	ENST00000294016	C5164	m5C	C25	5'-GGGACAGAGGCCGCCAGUGGAGAUCAUGG-3'	((........)).(((.((.....))))) ( -2.50)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr16:3965465-3965493	ADCY9	HGNC:240	ENSG00000162104	GGGACAGAGGCCGCCAGUGGAGAUCAUGG
hsa_m5C_1071	chr16	4115985	4115986	-	ENST00000294016	C457	m5C	C5	5'-GGGUCGGGGUCCGGGCCCGGG-3'	(((((........)))))... ( -9.20)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	21	chr16:4115970-4115990	ADCY9	HGNC:240	ENSG00000162104	GGGUCGGGGUCCGGGCCCGGG
hsa_m5C_1072	chr16	4115979	4115980	-	ENST00000294016	C463	m5C	C11	5'-GGGUCGGGGUCCGGGCCCGGG-3'	(((((........)))))... ( -9.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	21	chr16:4115970-4115990	ADCY9	HGNC:240	ENSG00000162104	GGGUCGGGGUCCGGGCCCGGG
hsa_m5C_1073	chr11	72291560	72291561	-	ENST00000294053	C3987	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr11:72291552-72291566	CLPB	HGNC:30664	ENSG00000162129	GGAGGCUGAGGCAGG
hsa_m5C_1074	chr11	72291554	72291555	-	ENST00000294053	C3993	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr11:72291552-72291566	CLPB	HGNC:30664	ENSG00000162129	GGAGGCUGAGGCAGG
hsa_m5C_1075	chr11	72291425	72291426	-	ENST00000294053	C4122	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr11:72291417-72291431	CLPB	HGNC:30664	ENSG00000162129	GGAGGCUGAGGCAGG
hsa_m5C_1076	chr11	72291419	72291420	-	ENST00000294053	C4128	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr11:72291417-72291431	CLPB	HGNC:30664	ENSG00000162129	GGAGGCUGAGGCAGG
hsa_m5C_1077	chr11	63813579	63813580	+	ENST00000294244	C125	m5C	C27	5'-GCGGGGAGGGGGCUGCGCGGGGCGGGCGG-3'	(((.((......)).)))........... ( -6.90)	bulge	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;RMVar database	28418038	29	chr11:63813554-63813582	SPINDOC	HGNC:25115	ENSG00000168005	GCGGGGAGGGGGCUGCGCGGGGCGGGCGG
hsa_m5C_1078	chr11	63826953	63826954	+	ENST00000294244	C1192	m5C	C16	5'-GGGCUCCGCGGGACACUGGAUCUCCAGG-3'	....(((...)))..((((....)))). ( -5.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr11:63826939-63826966	SPINDOC	HGNC:25115	ENSG00000168005	GGGCUCCGCGGGACACUGGAUCUCCAGG
hsa_m5C_1079	chr2	42058252	42058253	+	ENST00000294964	C2226	m5C	C16	5'-GGCCAGCCCAGGGGUCAGGGGCAGAGG-3'	.....((((.........))))..... ( -6.50)	loop	mRNA	lung	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	27	chr2:42058238-42058264	PKDCC	HGNC:25123	ENSG00000162878	GGCCAGCCCAGGGGUCAGGGGCAGAGG
hsa_m5C_1080	chr2	42048427	42048428	+	ENST00000294964	C408	m5C	C12	5'-GGGGCCCCGGGCCCGGGGCGGG-3'	...((((((....))))))... (-13.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr2:42048417-42048438	PKDCC	HGNC:25123	ENSG00000162878	GGGGCCCCGGGCCCGGGGCGGG
hsa_m5C_1081	chr2	42048346	42048347	+	ENST00000294964	C327	m5C	C14	5'-GGGUCCGGGCCGUCGCGGGGGCCGCGGG-3'	....(((((((........)))).))). (-13.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	28	chr2:42048334-42048361	PKDCC	HGNC:25123	ENSG00000162878	GGGUCCGGGCCGUCGCGGGGGCCGCGGG
hsa_m5C_1082	chr2	61050274	61050275	+	ENST00000295030	C2757	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr2:61050270-61050284	PEX13	HGNC:8855	ENSG00000162928	GGAGGCUGAGGCAGG
hsa_m5C_1083	chr2	61050280	61050281	+	ENST00000295030	C2763	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	15	chr2:61050270-61050284	PEX13	HGNC:8855	ENSG00000162928	GGAGGCUGAGGCAGG
hsa_m5C_1084	chr2	118847108	118847109	-	ENST00000295206	C540	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	30526041	11	chr2:118847104-118847114	EN1	HGNC:3342	ENSG00000163064	GGCGGCGGCGG
hsa_m5C_1085	chr2	118847105	118847106	-	ENST00000295206	C543	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	11	chr2:118847104-118847114	EN1	HGNC:3342	ENSG00000163064	GGCGGCGGCGG
hsa_m5C_1086	chr3	120450978	120450979	-	ENST00000295633	C14	m5C	C7	5'-GGCUGGCGAUCGGCGG-3'	.((((.....)))).. ( -4.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	16	chr3:120450970-120450985	FSTL1	HGNC:3972	ENSG00000163430	GGCUGGCGAUCGGCGG
hsa_m5C_1087	chr1	201982819	201982820	+	ENST00000295640	C173	m5C	C24	5'-GGGCUGAGUUCGGGCCUCCAGGGCCCGGCGCAGGG-3'	...(((.((.(((((((...))))))))).))).. (-17.80)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	35	chr1:201982797-201982831	RNPEP	HGNC:10078	ENSG00000176393	GGGCUGAGUUCGGGCCUCCAGGGCCCGGCGCAGGG
hsa_m5C_1088	chr1	201982820	201982821	+	ENST00000295640	C174	m5C	C25	5'-GGGCUGAGUUCGGGCCUCCAGGGCCCGGCGCAGGG-3'	...(((.((.(((((((...))))))))).))).. (-17.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	35	chr1:201982797-201982831	RNPEP	HGNC:10078	ENSG00000176393	GGGCUGAGUUCGGGCCUCCAGGGCCCGGCGCAGGG
hsa_m5C_1089	chr1	201982821	201982822	+	ENST00000295640	C175	m5C	C26	5'-GGGCUGAGUUCGGGCCUCCAGGGCCCGGCGCAGGG-3'	...(((.((.(((((((...))))))))).))).. (-17.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	35	chr1:201982797-201982831	RNPEP	HGNC:10078	ENSG00000176393	GGGCUGAGUUCGGGCCUCCAGGGCCCGGCGCAGGG
hsa_m5C_1090	chr1	201982824	201982825	+	ENST00000295640	C178	m5C	C29	5'-GGGCUGAGUUCGGGCCUCCAGGGCCCGGCGCAGGG-3'	...(((.((.(((((((...))))))))).))).. (-17.80)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	35	chr1:201982797-201982831	RNPEP	HGNC:10078	ENSG00000176393	GGGCUGAGUUCGGGCCUCCAGGGCCCGGCGCAGGG
hsa_m5C_1091	chr2	219237018	219237019	-	ENST00000295759	C2304	m5C	C7	5'-GGGAGGCUGAGACGGGUGG-3'	.....(((......))).. ( -0.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	19	chr2:219237007-219237025	GLB1L	HGNC:28129	ENSG00000163521	GGGAGGCUGAGACGGGUGG
hsa_m5C_1092	chr2	219245401	219245402	-	ENST00000295759	C43	m5C	C25	5'-GGGCAUCCGGAGGAUGUGGGGACGCGG-3'	..((((((...)))))).......... ( -6.30)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	27	chr2:219245400-219245426	GLB1L	HGNC:28129	ENSG00000163521	GGGCAUCCGGAGGAUGUGGGGACGCGG
hsa_m5C_1093	chr3	170222537	170222538	+	ENST00000295797	C115	m5C	C13	5'-GGGUCGGCGCUGCGGGCGAGGUGGGCAGGUAGGUGGG-3'	...((.((.((((..((.......))..)))))).)) (-10.00)	loop	mRNA	SNB19;HeLa	m5C-RIP-seq:(Medium),RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	37	chr3:170222526-170222562	PRKCI	HGNC:9404	ENSG00000163558	GGGUCGGCGCUGCGGGCGAGGUGGGCAGGUAGGUGGG
hsa_m5C_1094	chr3	157160126	157160127	-	ENST00000295926	C21	m5C	C10	5'-GGGUUCCGGCUGCGUUGGGCUUGCGUGCGG-3'	.....(((..((((.......))))..))) ( -6.20)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr3:157160107-157160136	CCNL1	HGNC:20569	ENSG00000163660	GGGUUCCGGCUGCGUUGGGCUUGCGUGCGG
hsa_m5C_1095	chr3	58142654	58142655	+	ENST00000295956	C5330	m5C	C21	5'-GGAUUCAGGCCCUGG^GUGACCGAAGAGG-3'	((((((((...))))))..))....... ( -3.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr3:58141915-58141929;58142650-58142662	FLNB	HGNC:3755	ENSG00000136068	GGAUUCAGGCCCUGGGUGACCGAAGAGG
hsa_m5C_1096	chr3	9932952	9932953	+	ENST00000295981	C1954	m5C	C6	5'-GGGGG^CGGCCGCCAGGGGCCGCGCGG-3'	....((((((......)))))).... (-14.40)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr3:9932854-9932858;9932953-9932973	IL17RC	HGNC:18358	ENSG00000163702	GGGGGCGGCCGCCAGGGGCCGCGCGG
hsa_m5C_1097	chr3	9917272	9917273	+	ENST00000295981	C176	m5C	C10	5'-GGGGGGGGGCAGCACAGGGCCUCAGGCCUGGG-3'	((...(((((........)))))...)).... (-10.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	32	chr3:9917264-9917295	IL17RC	HGNC:18358	ENSG00000163702	GGGGGGGGGCAGCACAGGGCCUCAGGCCUGGG
hsa_m5C_1098	chr4	76740010	76740011	+	ENST00000296043	C2662	m5C	C18	5'-GGCUCAGGCCUGGCAAGCGG-3'	(((....))).......... ( -4.20)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr4:76739994-76740013	SHROOM3	HGNC:30422	ENSG00000138771	GGCUCAGGCCUGGCAAGCGG
hsa_m5C_1099	chr4	76740443	76740444	+	ENST00000296043	C3095	m5C	C4	5'-GGGCCGGAGGGGGCCCGG-3'	(((((......))))).. (-12.00)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr4:76740441-76740458	SHROOM3	HGNC:30422	ENSG00000138771	GGGCCGGAGGGGGCCCGG
hsa_m5C_1100	chr4	76740444	76740445	+	ENST00000296043	C3096	m5C	C5	5'-GGGCCGGAGGGGGCCCGG-3'	(((((......))))).. (-12.00)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	18	chr4:76740441-76740458	SHROOM3	HGNC:30422	ENSG00000138771	GGGCCGGAGGGGGCCCGG
hsa_m5C_1101	chr4	76740454	76740455	+	ENST00000296043	C3106	m5C	C15	5'-GGGCCGGAGGGGGCCCGG-3'	(((((......))))).. (-12.00)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	18	chr4:76740441-76740458	SHROOM3	HGNC:30422	ENSG00000138771	GGGCCGGAGGGGGCCCGG
hsa_m5C_1102	chr4	76740455	76740456	+	ENST00000296043	C3107	m5C	C16	5'-GGGCCGGAGGGGGCCCGG-3'	(((((......))))).. (-12.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	18	chr4:76740441-76740458	SHROOM3	HGNC:30422	ENSG00000138771	GGGCCGGAGGGGGCCCGG
hsa_m5C_1103	chr3	197003264	197003265	-	ENST00000296350	C2439	m5C	C15	5'-GGGCCCGGCGUGGGCGGG-3'	..((((.....))))... ( -7.40)	loop	mRNA	HeLa,With in vitro transcribed m5C spike-ins;HeLa,siControl;T24;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	18	chr3:197003262-197003279	MELTF	HGNC:7037	ENSG00000163975	GGGCCCGGCGUGGGCGGG
hsa_m5C_1104	chr3	49642437	49642438	+	ENST00000296452	C930	m5C	C5	5'-GGGGCCCAGGAGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	13	chr3:49642434-49642446	BSN	HGNC:1117	ENSG00000164061	GGGGCCCAGGAGG
hsa_m5C_1105	chr3	49642438	49642439	+	ENST00000296452	C931	m5C	C6	5'-GGGGCCCAGGAGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	13	chr3:49642434-49642446	BSN	HGNC:1117	ENSG00000164061	GGGGCCCAGGAGG
hsa_m5C_1106	chr3	49642439	49642440	+	ENST00000296452	C932	m5C	C7	5'-GGGGCCCAGGAGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	13	chr3:49642434-49642446	BSN	HGNC:1117	ENSG00000164061	GGGGCCCAGGAGG
hsa_m5C_1107	chr4	127839486	127839487	+	ENST00000296464	C9362	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr4:127839482-127839496	HSPA4L	HGNC:17041	ENSG00000164070	GGAGGCUGAGGCAGG
hsa_m5C_1108	chr4	127839492	127839493	+	ENST00000296464	C9368	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr4:127839482-127839496	HSPA4L	HGNC:17041	ENSG00000164070	GGAGGCUGAGGCAGG
hsa_m5C_1109	chr3	52255060	52255061	-	ENST00000296490	C3659	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr3:52255052-52255066	WDR82	HGNC:28826	ENSG00000164091	GGAGGCUGAGGCAGG
hsa_m5C_1110	chr4	173332177	173332178	-	ENST00000296503	C639	m5C	C13	5'-GGCCCUGGCAGGCCAACAGG-3'	((((......))))...... ( -7.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr4:173332171-173332190	HMGB2	HGNC:5000	ENSG00000164104	GGCCCUGGCAGGCCAACAGG
hsa_m5C_1111	chr4	173332176	173332177	-	ENST00000296503	C640	m5C	C14	5'-GGCCCUGGCAGGCCAACAGG-3'	((((......))))...... ( -7.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr4:173332171-173332190	HMGB2	HGNC:5000	ENSG00000164104	GGCCCUGGCAGGCCAACAGG
hsa_m5C_1112	chr4	173332173	173332174	-	ENST00000296503	C643	m5C	C17	5'-GGCCCUGGCAGGCCAACAGG-3'	((((......))))...... ( -7.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr4:173332171-173332190	HMGB2	HGNC:5000	ENSG00000164104	GGCCCUGGCAGGCCAACAGG
hsa_m5C_1113	chr4	173371217	173371218	+	ENST00000296504	C265	m5C	C3	5'-GGCGGGGAUGCGG-3'	.(((....))).. ( -1.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	13	chr4:173371216-173371228	SAP30	HGNC:10532	ENSG00000164105	GGCGGGGAUGCGG
hsa_m5C_1114	chr4	121686301	121686302	-	ENST00000296511	C233	m5C	C7	5'-GGAAGGCUAUGAAAGGCUUGG-3'	...(((((......))))).. ( -3.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	21	chr4:121686288-121686308	ANXA5	HGNC:543	ENSG00000164111	GGAAGGCUAUGAAAGGCUUGG
hsa_m5C_1115	chr4	121686291	121686292	-	ENST00000296511	C243	m5C	C17	5'-GGAAGGCUAUGAAAGGCUUGG-3'	...(((((......))))).. ( -3.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	21	chr4:121686288-121686308	ANXA5	HGNC:543	ENSG00000164111	GGAAGGCUAUGAAAGGCUUGG
hsa_m5C_1116	chr5	5422901	5422902	+	ENST00000296564	C226	m5C	C4	5'-GGCCCGGCGGCGG-3'	.(((....))).. ( -3.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	13	chr5:5422899-5422911	ICE1	HGNC:29154	ENSG00000164151	GGCCCGGCGGCGG
hsa_m5C_1117	chr5	10564486	10564487	+	ENST00000296657	C418	m5C	C5	5'-GGGACCGGGCCGGAGGGCGGCGGG-3'	....(((.(((....)))..))). ( -9.70)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	24	chr5:10564483-10564506	ANKRD33B	HGNC:35240	ENSG00000164236	GGGACCGGGCCGGAGGGCGGCGGG
hsa_m5C_1118	chr5	10564487	10564488	+	ENST00000296657	C419	m5C	C6	5'-GGGACCGGGCCGGAGGGCGGCGGG-3'	....(((.(((....)))..))). ( -9.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	24	chr5:10564483-10564506	ANKRD33B	HGNC:35240	ENSG00000164236	GGGACCGGGCCGGAGGGCGGCGGG
hsa_m5C_1119	chr5	10564491	10564492	+	ENST00000296657	C423	m5C	C10	5'-GGGACCGGGCCGGAGGGCGGCGGG-3'	....(((.(((....)))..))). ( -9.70)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	24	chr5:10564483-10564506	ANKRD33B	HGNC:35240	ENSG00000164236	GGGACCGGGCCGGAGGGCGGCGGG
hsa_m5C_1120	chr5	10564492	10564493	+	ENST00000296657	C424	m5C	C11	5'-GGGACCGGGCCGGAGGGCGGCGGG-3'	....(((.(((....)))..))). ( -9.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	24	chr5:10564483-10564506	ANKRD33B	HGNC:35240	ENSG00000164236	GGGACCGGGCCGGAGGGCGGCGGG
hsa_m5C_1121	chr5	10279792	10279793	-	ENST00000296658	C1695	m5C	C7	5'-GGGAGGCCGAGGUGGGUGG-3'	.....(((......))).. ( -3.10)	loop	mRNA	heart	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	19	chr5:10279781-10279799	CMBL	HGNC:25090	ENSG00000164237	GGGAGGCCGAGGUGGGUGG
hsa_m5C_1122	chr5	149332727	149332728	+	ENST00000296721	C2119	m5C	C21	5'-GGCUCUGGAAGAAGCCGUGGCCACCCUGG-3'	((((.(((......))).))))....... ( -9.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr5:149332708-149332736	AFAP1L1	HGNC:26714	ENSG00000157510	GGCUCUGGAAGAAGCCGUGGCCACCCUGG
hsa_m5C_1123	chr5	72107488	72107489	+	ENST00000296755	C15	m5C	C10	5'-GGAGAGGAGCGGCCGG-3'	.....((.....)).. ( -0.30)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr5:72107480-72107495	MAP1B	HGNC:6836	ENSG00000131711	GGAGAGGAGCGGCCGG
hsa_m5C_1124	chr5	218140	218141	-	ENST00000296824	C13	m5C	C8	5'-GGACCCGCGGACGGUGG-3'	....((((.....)))) ( -4.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	17	chr5:218132-218148	CCDC127	HGNC:30520	ENSG00000164366	GGACCCGCGGACGGUGG
hsa_m5C_1125	chr6	47284038	47284039	-	ENST00000296861	C1536	m5C	C6	5'-GGGGCCCCGGCAGG-3'	((....))...... ( -0.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr6:47284031-47284044	TNFRSF21	HGNC:13469	ENSG00000146072	GGGGCCCCGGCAGG
hsa_m5C_1126	chr5	172006629	172006630	-	ENST00000296933	C244	m5C	C25	5'-GGGGGAGGGCGGAGCUGCCGGCGGCCCGGGCGGG-3'	(((....((((....)))).....)))....... (-10.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	34	chr5:172006621-172006654	FBXW11	HGNC:13607	ENSG00000072803	GGGGGAGGGCGGAGCUGCCGGCGGCCCGGGCGGG
hsa_m5C_1127	chr5	172006628	172006629	-	ENST00000296933	C245	m5C	C26	5'-GGGGGAGGGCGGAGCUGCCGGCGGCCCGGGCGGG-3'	(((....((((....)))).....)))....... (-10.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	34	chr5:172006621-172006654	FBXW11	HGNC:13607	ENSG00000072803	GGGGGAGGGCGGAGCUGCCGGCGGCCCGGGCGGG
hsa_m5C_1128	chr5	172006627	172006628	-	ENST00000296933	C246	m5C	C27	5'-GGGGGAGGGCGGAGCUGCCGGCGGCCCGGGCGGG-3'	(((....((((....)))).....)))....... (-10.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	34	chr5:172006621-172006654	FBXW11	HGNC:13607	ENSG00000072803	GGGGGAGGGCGGAGCUGCCGGCGGCCCGGGCGGG
hsa_m5C_1129	chr5	172006623	172006624	-	ENST00000296933	C250	m5C	C31	5'-GGGGGAGGGCGGAGCUGCCGGCGGCCCGGGCGGG-3'	(((....((((....)))).....)))....... (-10.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	34	chr5:172006621-172006654	FBXW11	HGNC:13607	ENSG00000072803	GGGGGAGGGCGGAGCUGCCGGCGGCCCGGGCGGG
hsa_m5C_1130	chr5	154190993	154190994	+	ENST00000297107	C262	m5C	C8	5'-GGGGGAUCGGGGGCGGCGGUGGCGCCGGCGGCGGG-3'	......(((....(((((....)))))....))). (-11.80)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database	28418038	35	chr5:154190987-154191021	GALNT10	HGNC:19873	ENSG00000164574	GGGGGAUCGGGGGCGGCGGUGGCGCCGGCGGCGGG
hsa_m5C_1131	chr5	154446590	154446591	+	ENST00000297109	C595	m5C	C25	5'-GGGACCCUCCCCCAGAGGGACCGGCCCGGGGCGGGG-3'	....((((.((((...(((.....))))))).)))) (-16.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	36	chr5:154446567-154446602	SAP30L	HGNC:25663	ENSG00000164576	GGGACCCUCCCCCAGAGGGACCGGCCCGGGGCGGGG
hsa_m5C_1132	chr5	154446591	154446592	+	ENST00000297109	C596	m5C	C26	5'-GGGACCCUCCCCCAGAGGGACCGGCCCGGGGCGGGG-3'	....((((.((((...(((.....))))))).)))) (-16.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	36	chr5:154446567-154446602	SAP30L	HGNC:25663	ENSG00000164576	GGGACCCUCCCCCAGAGGGACCGGCCCGGGGCGGGG
hsa_m5C_1133	chr5	154446597	154446598	+	ENST00000297109	C602	m5C	C32	5'-GGGACCCUCCCCCAGAGGGACCGGCCCGGGGCGGGG-3'	....((((.((((...(((.....))))))).)))) (-16.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038;22344696	36	chr5:154446567-154446602	SAP30L	HGNC:25663	ENSG00000164576	GGGACCCUCCCCCAGAGGGACCGGCCCGGGGCGGGG
hsa_m5C_1134	chr5	160413520	160413521	-	ENST00000297151	C580	m5C	C5	5'-GGAUCGGUGGAAUGG-3'	NA	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr5:160413511-160413525	SLU7	HGNC:16939	ENSG00000164609	GGAUCGGUGGAAUGG
hsa_m5C_1135	chr8	81732572	81732573	+	ENST00000297265	C126	m5C	C10	5'-GGCGCGGCCCCGGGG-3'	(((...)))...... ( -2.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr8:81732564-81732578	CHMP4C	HGNC:30599	ENSG00000164695	GGCGCGGCCCCGGGG
hsa_m5C_1136	chr8	81732573	81732574	+	ENST00000297265	C127	m5C	C11	5'-GGCGCGGCCCCGGGG-3'	(((...)))...... ( -2.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	15	chr8:81732564-81732578	CHMP4C	HGNC:30599	ENSG00000164695	GGCGCGGCCCCGGGG
hsa_m5C_1137	chr7	98107180	98107181	+	ENST00000297293	C320	m5C	C10	5'-GGCGAGAUGCCGGGGCCGCCGGCGUUGCGG-3'	..((.((((((((.....)))))))).)). (-15.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr7:98107172-98107201	LMTK2	HGNC:17880	ENSG00000164715	GGCGAGAUGCCGGGGCCGCCGGCGUUGCGG
hsa_m5C_1138	chr7	98107186	98107187	+	ENST00000297293	C326	m5C	C16	5'-GGCGAGAUGCCGGGGCCGCCGGCGUUGCGG-3'	..((.((((((((.....)))))))).)). (-15.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr7:98107172-98107201	LMTK2	HGNC:17880	ENSG00000164715	GGCGAGAUGCCGGGGCCGCCGGCGUUGCGG
hsa_m5C_1139	chr7	1547017	1547018	-	ENST00000297477	C1268	m5C	C6	5'-GGCGGCUCCGGCGG-3'	....((....)).. ( -2.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr7:1547010-1547023	TMEM184A	HGNC:28797	ENSG00000164855	GGCGGCUCCGGCGG
hsa_m5C_1140	chr7	1547015	1547016	-	ENST00000297477	C1270	m5C	C8	5'-GGCGGCUCCGGCGG-3'	....((....)).. ( -2.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr7:1547010-1547023	TMEM184A	HGNC:28797	ENSG00000164855	GGCGGCUCCGGCGG
hsa_m5C_1141	chr7	1547014	1547015	-	ENST00000297477	C1271	m5C	C9	5'-GGCGGCUCCGGCGG-3'	....((....)).. ( -2.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr7:1547010-1547023	TMEM184A	HGNC:28797	ENSG00000164855	GGCGGCUCCGGCGG
hsa_m5C_1142	chr7	1547011	1547012	-	ENST00000297477	C1274	m5C	C12	5'-GGCGGCUCCGGCGG-3'	....((....)).. ( -2.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr7:1547010-1547023	TMEM184A	HGNC:28797	ENSG00000164855	GGCGGCUCCGGCGG
hsa_m5C_1143	chr7	1546945	1546946	-	ENST00000297477	C1340	m5C	C7	5'-GGGGGGCCUGGGCUGCCAGUGCUGUAGGG-3'	....(((((((....)))).)))...... ( -9.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	29	chr7:1546924-1546952	TMEM184A	HGNC:28797	ENSG00000164855	GGGGGGCCUGGGCUGCCAGUGCUGUAGGG
hsa_m5C_1144	chr7	1546944	1546945	-	ENST00000297477	C1341	m5C	C8	5'-GGGGGGCCUGGGCUGCCAGUGCUGUAGGG-3'	....(((((((....)))).)))...... ( -9.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	29	chr7:1546924-1546952	TMEM184A	HGNC:28797	ENSG00000164855	GGGGGGCCUGGGCUGCCAGUGCUGUAGGG
hsa_m5C_1145	chr7	150993869	150993870	+	ENST00000297494	C402	m5C	C17	5'-GGGGCUGGGGCUGGGCCUUGGG-3'	....(((((((...))))))). ( -7.10)	loop	mRNA	spleen	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	22	chr7:150993854-150993875	NOS3	HGNC:7876	ENSG00000164867	GGGGCUGGGGCUGGGCCUUGGG
hsa_m5C_1146	chr5	126625501	126625502	+	ENST00000297540	C1859	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	spleen	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr5:126625491-126625505	PHAX	HGNC:10241	ENSG00000164902	GGAGGCUGAGGCAGG
hsa_m5C_1147	chr5	126625755	126625756	+	ENST00000297540	C2113	m5C	C11	5'-GGCUGGAGUACAGUGGCAGG-3'	.((((.....))))...... ( -3.80)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	20	chr5:126625746-126625765	PHAX	HGNC:10241	ENSG00000164902	GGCUGGAGUACAGUGGCAGG
hsa_m5C_1148	chr5	126625761	126625762	+	ENST00000297540	C2119	m5C	C17	5'-GGCUGGAGUACAGUGGCAGG-3'	.((((.....))))...... ( -3.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr5:126625746-126625765	PHAX	HGNC:10241	ENSG00000164902	GGCUGGAGUACAGUGGCAGG
hsa_m5C_1149	chr8	103426102	103426103	+	ENST00000297579	C1159	m5C	C13	5'-GGAUGGGCCAGGCUAUGG-3'	..((((......)))).. ( -1.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	18	chr8:103426091-103426108	DCAF13	HGNC:24535	ENSG00000164934	GGAUGGGCCAGGCUAUGG
hsa_m5C_1150	chr13	51760841	51760842	+	ENST00000298125	C2502	m5C	C11	5'-GGAGGCGGAGCCCAGG-3'	...(((...))).... ( -2.30)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr13:51760832-51760847	WDFY2	HGNC:20482	ENSG00000139668	GGAGGCGGAGCCCAGG
hsa_m5C_1151	chr11	72225090	72225091	+	ENST00000298229	C325	m5C	C21	5'-GGCCGCGGAGGAGCUGCUGGCCCGGGCGG-3'	((((((((.....)))).))))....... (-11.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	29	chr11:72225071-72225099	INPPL1	HGNC:6080	ENSG00000165458	GGCCGCGGAGGAGCUGCUGGCCCGGGCGG
hsa_m5C_1152	chr11	72225005	72225006	+	ENST00000298229	C240	m5C	C7	5'-GGGGCGCCGGGCCCGGGGGGCGCCCUGG-3'	((((((((..........)))))))).. (-17.30)	bulge	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr11:72225000-72225027	INPPL1	HGNC:6080	ENSG00000165458	GGGGCGCCGGGCCCGGGGGGCGCCCUGG
hsa_m5C_1153	chr11	72225006	72225007	+	ENST00000298229	C241	m5C	C8	5'-GGGGCGCCGGGCCCGGGGGGCGCCCUGG-3'	((((((((..........)))))))).. (-17.30)	bulge	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr11:72225000-72225027	INPPL1	HGNC:6080	ENSG00000165458	GGGGCGCCGGGCCCGGGGGGCGCCCUGG
hsa_m5C_1154	chr11	72225010	72225011	+	ENST00000298229	C245	m5C	C12	5'-GGGGCGCCGGGCCCGGGGGGCGCCCUGG-3'	((((((((..........)))))))).. (-17.30)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	28	chr11:72225000-72225027	INPPL1	HGNC:6080	ENSG00000165458	GGGGCGCCGGGCCCGGGGGGCGCCCUGG
hsa_m5C_1155	chr11	72225011	72225012	+	ENST00000298229	C246	m5C	C13	5'-GGGGCGCCGGGCCCGGGGGGCGCCCUGG-3'	((((((((..........)))))))).. (-17.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	28	chr11:72225000-72225027	INPPL1	HGNC:6080	ENSG00000165458	GGGGCGCCGGGCCCGGGGGGCGCCCUGG
hsa_m5C_1156	chr11	72225012	72225013	+	ENST00000298229	C247	m5C	C14	5'-GGGGCGCCGGGCCCGGGGGGCGCCCUGG-3'	((((((((..........)))))))).. (-17.30)	loop	mRNA	HeLa	m5C-RIP-seq:(Medium),RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	28	chr11:72225000-72225027	INPPL1	HGNC:6080	ENSG00000165458	GGGGCGCCGGGCCCGGGGGGCGCCCUGG
hsa_m5C_1157	chr11	72235414	72235415	+	ENST00000298229	C2841	m5C	C11	5'-GGUGCGGGUGCCCACGGAGCGCCUGG-3'	....(((((((.......))))))). (-10.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	26	chr11:72235405-72235430	INPPL1	HGNC:6080	ENSG00000165458	GGUGCGGGUGCCCACGGAGCGCCUGG
hsa_m5C_1158	chr11	72235415	72235416	+	ENST00000298229	C2842	m5C	C12	5'-GGUGCGGGUGCCCACGGAGCGCCUGG-3'	....(((((((.......))))))). (-10.50)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	26	chr11:72235405-72235430	INPPL1	HGNC:6080	ENSG00000165458	GGUGCGGGUGCCCACGGAGCGCCUGG
hsa_m5C_1159	chr11	72235416	72235417	+	ENST00000298229	C2843	m5C	C13	5'-GGUGCGGGUGCCCACGGAGCGCCUGG-3'	....(((((((.......))))))). (-10.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	26	chr11:72235405-72235430	INPPL1	HGNC:6080	ENSG00000165458	GGUGCGGGUGCCCACGGAGCGCCUGG
hsa_m5C_1160	chr10	44977860	44977861	-	ENST00000298295	C387	m5C	C9	5'-GGACAAGGCCACGGCCCAGG-3'	......(((....))).... ( -4.00)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr10:44977850-44977869	DEPP1	HGNC:23355	ENSG00000165507	GGACAAGGCCACGGCCCAGG
hsa_m5C_1161	chr14	49768159	49768160	+	ENST00000298307	C8	m5C	C3	5'-GGCUGCAAUAGGGAGCCGGCCCGACGCGG-3'	..((((....(((......)))...)))) ( -7.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr14:49768158-49768186	KLHDC2	HGNC:20231	ENSG00000165516	GGCUGCAAUAGGGAGCCGGCCCGACGCGG
hsa_m5C_1162	chr14	51094521	51094522	-	ENST00000298355	C1540	m5C	C8	5'-GGAUGACCGGGGGCUCCGCGG-3'	......(((.((...)).))) ( -6.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	21	chr14:51094509-51094529	TRIM9	HGNC:16288	ENSG00000100505	GGAUGACCGGGGGCUCCGCGG
hsa_m5C_1163	chr10	12129741	12129742	+	ENST00000298428	C66	m5C	C3	5'-GGCAGCGCCGAGGCCGCGGUUUCCCCCUGG-3'	(((...)))(((((....)))))....... ( -6.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	30	chr10:12129740-12129769	SEC61A2	HGNC:17702	ENSG00000065665	GGCAGCGCCGAGGCCGCGGUUUCCCCCUGG
hsa_m5C_1164	chr9	136392076	136392077	-	ENST00000298532	C1209	m5C	C7	5'-GGAGAUCCGGAAGUUCUGGCAGAACUCGG-3'	......(((..((((((...))))))))) ( -6.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr9:136392055-136392083	SNAPC4	HGNC:11137	ENSG00000165684	GGAGAUCCGGAAGUUCUGGCAGAACUCGG
hsa_m5C_1165	chr9	136377778	136377779	-	ENST00000298532	C4417	m5C	C5	5'-GGGGCUGGUGCGG-3'	...((....)).. ( -1.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	13	chr9:136377771-136377783	SNAPC4	HGNC:11137	ENSG00000165684	GGGGCUGGUGCGG
hsa_m5C_1166	chr9	136377772	136377773	-	ENST00000298532	C4423	m5C	C11	5'-GGGGCUGGUGCGG-3'	...((....)).. ( -1.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	13	chr9:136377771-136377783	SNAPC4	HGNC:11137	ENSG00000165684	GGGGCUGGUGCGG
hsa_m5C_1167	chr5	176657615	176657616	+	ENST00000298564	C1372	m5C	C5	5'-GGGGCCCCUGGCCCGG-3'	.(((((...))))).. ( -9.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	16	chr5:176657612-176657627	TSPAN17	HGNC:13594	ENSG00000048140	GGGGCCCCUGGCCCGG
hsa_m5C_1168	chr5	176657616	176657617	+	ENST00000298564	C1373	m5C	C6	5'-GGGGCCCCUGGCCCGG-3'	.(((((...))))).. ( -9.50)	loop	mRNA	HeLa	RBS-Seq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30872485	16	chr5:176657612-176657627	TSPAN17	HGNC:13594	ENSG00000048140	GGGGCCCCUGGCCCGG
hsa_m5C_1169	chr5	176347358	176347359	-	ENST00000298569	C1489	m5C	C3	5'-GGCGUGGUGGUGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	13	chr5:176347349-176347361	KIAA1191	HGNC:29209	ENSG00000122203	GGCGUGGUGGUGG
hsa_m5C_1170	chr14	21074198	21074199	+	ENST00000298694	C562	m5C	C24	5'-GGCUACAAGGCAUCAACAAGGACCGG-3'	.(((....)))............... ( -1.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr14:21074176-21074201	ARHGEF40	HGNC:25516	ENSG00000165801	GGCUACAAGGCAUCAACAAGGACCGG
hsa_m5C_1171	chr14	21083836	21083837	+	ENST00000298694	C3669	m5C	C3	5'-GGCUCCAUGGAGGCUGG-3'	((((.......)))).. ( -2.00)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr14:21083835-21083851	ARHGEF40	HGNC:25516	ENSG00000165801	GGCUCCAUGGAGGCUGG
hsa_m5C_1172	chr9	86947249	86947250	-	ENST00000298743	C257	m5C	C3	5'-GGCGGCGGUGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	30872485	11	chr9:86947242-86947252	GAS1	HGNC:4165	ENSG00000180447	GGCGGCGGUGG
hsa_m5C_1173	chr9	86947246	86947247	-	ENST00000298743	C260	m5C	C6	5'-GGCGGCGGUGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	11	chr9:86947242-86947252	GAS1	HGNC:4165	ENSG00000180447	GGCGGCGGUGG
hsa_m5C_1174	chr9	86946302	86946303	-	ENST00000298743	C1204	m5C	C13	5'-GGGCGGCCCCGGCGCGGGCGGG-3'	.....((((......))))... ( -7.30)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr9:86946294-86946315	GAS1	HGNC:4165	ENSG00000180447	GGGCGGCCCCGGCGCGGGCGGG
hsa_m5C_1175	chr9	86945867	86945868	-	ENST00000298743	C1639	m5C	C4	5'-GGGCGGCCGCGGGGACCUGCCCUAUGGGCCUGGG-3'	((((..(((.((((.....)))).)))))))... (-13.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	34	chr9:86945838-86945871	GAS1	HGNC:4165	ENSG00000180447	GGGCGGCCGCGGGGACCUGCCCUAUGGGCCUGGG
hsa_m5C_1176	chr9	86946758	86946759	-	ENST00000298743	C748	m5C	C4	5'-GGGCGGCGGCGGCGAGGCCCGCGGGGGGACAGUGCCGGG-3'	((((..((....))..)))).(((..........))).. (-13.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	39	chr9:86946724-86946762	GAS1	HGNC:4165	ENSG00000180447	GGGCGGCGGCGGCGAGGCCCGCGGGGGGACAGUGCCGGG
hsa_m5C_1177	chr9	86946755	86946756	-	ENST00000298743	C751	m5C	C7	5'-GGGCGGCGGCGGCGAGGCCCGCGGGGGGACAGUGCCGGG-3'	((((..((....))..)))).(((..........))).. (-13.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	39	chr9:86946724-86946762	GAS1	HGNC:4165	ENSG00000180447	GGGCGGCGGCGGCGAGGCCCGCGGGGGGACAGUGCCGGG
hsa_m5C_1178	chr9	86946752	86946753	-	ENST00000298743	C754	m5C	C10	5'-GGGCGGCGGCGGCGAGGCCCGCGGGGGGACAGUGCCGGG-3'	((((..((....))..)))).(((..........))).. (-13.80)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	39	chr9:86946724-86946762	GAS1	HGNC:4165	ENSG00000180447	GGGCGGCGGCGGCGAGGCCCGCGGGGGGACAGUGCCGGG
hsa_m5C_1179	chr9	86946749	86946750	-	ENST00000298743	C757	m5C	C13	5'-GGGCGGCGGCGGCGAGGCCCGCGGGGGGACAGUGCCGGG-3'	((((..((....))..)))).(((..........))).. (-13.80)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	39	chr9:86946724-86946762	GAS1	HGNC:4165	ENSG00000180447	GGGCGGCGGCGGCGAGGCCCGCGGGGGGACAGUGCCGGG
hsa_m5C_1180	chr11	93543299	93543300	-	ENST00000298966	C92	m5C	C9	5'-GGUGGCGGCGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	11	chr11:93543298-93543308	SMCO4	HGNC:24810	ENSG00000166002	GGUGGCGGCGG
hsa_m5C_1181	chr10	125823561	125823562	+	ENST00000299130	C17	m5C	C11	5'-GGCAACAUGGCGUCCAGGUCUAAGCGG-3'	.((.....(((......)))...)).. ( -3.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr10:125823552-125823578	BCCIP	HGNC:978	ENSG00000107949	GGCAACAUGGCGUCCAGGUCUAAGCGG
hsa_m5C_1182	chr16	47461354	47461355	+	ENST00000299167	C30	m5C	C3	5'-GGCGGGGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	11	chr16:47461353-47461363	PHKB	HGNC:8927	ENSG00000102893	GGCGGGGGCGG
hsa_m5C_1183	chr16	50105203	50105204	+	ENST00000299192	C2348	m5C	C3	5'-GGCCAGGCAUGGUGG-3'	.((((....)))).. ( -3.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr16:50105202-50105216	HEATR3	HGNC:26087	ENSG00000155393	GGCCAGGCAUGGUGG
hsa_m5C_1184	chr16	50105204	50105205	+	ENST00000299192	C2349	m5C	C4	5'-GGCCAGGCAUGGUGG-3'	.((((....)))).. ( -3.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr16:50105202-50105216	HEATR3	HGNC:26087	ENSG00000155393	GGCCAGGCAUGGUGG
hsa_m5C_1185	chr16	50105208	50105209	+	ENST00000299192	C2353	m5C	C8	5'-GGCCAGGCAUGGUGG-3'	.((((....)))).. ( -3.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr16:50105202-50105216	HEATR3	HGNC:26087	ENSG00000155393	GGCCAGGCAUGGUGG
hsa_m5C_1186	chr16	50105360	50105361	+	ENST00000299192	C2505	m5C	C7	5'-GGGAGGCUGAGGGAGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	16	chr16:50105355-50105370	HEATR3	HGNC:26087	ENSG00000155393	GGGAGGCUGAGGGAGG
hsa_m5C_1187	chr15	70832738	70832739	-	ENST00000299213	C858	m5C	C7	5'-GGAGUUCGAGGAGGUGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr15:70832729-70832745	LARP6	HGNC:24012	ENSG00000166173	GGAGUUCGAGGAGGUGG
hsa_m5C_1188	chr12	101830932	101830933	-	ENST00000299314	C27	m5C	C10	5'-GGCCAGACCCGGGCGGCGCCGG-3'	........((((......)))) ( -6.10)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;HeLa,siControl;HeLa	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	22	chr12:101830921-101830942	GNPTAB	HGNC:29670	ENSG00000111670	GGCCAGACCCGGGCGGCGCCGG
hsa_m5C_1189	chr11	6612043	6612044	-	ENST00000299424	C173	m5C	C9	5'-GGGGACAGCGGGGGGACCUGGGGCUGGAGCAGCUGCUGGGG-3'	.....(((((((....)))..(((((...)))))))))... (-11.30)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	41	chr11:6612012-6612052	TAF10	HGNC:11543	ENSG00000166337	GGGGACAGCGGGGGGACCUGGGGCUGGAGCAGCUGCUGGGG
hsa_m5C_1190	chr17	16353227	16353228	-	ENST00000299736	C242	m5C	C4	5'-GGGCCCAGGAGGAGGGCCCGGGG-3'	((((((.......)))))).... (-13.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	23	chr17:16353209-16353231	CENPV	HGNC:29920	ENSG00000166582	GGGCCCAGGAGGAGGGCCCGGGG
hsa_m5C_1191	chr17	16353226	16353227	-	ENST00000299736	C243	m5C	C5	5'-GGGCCCAGGAGGAGGGCCCGGGG-3'	((((((.......)))))).... (-13.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	23	chr17:16353209-16353231	CENPV	HGNC:29920	ENSG00000166582	GGGCCCAGGAGGAGGGCCCGGGG
hsa_m5C_1192	chr17	16353225	16353226	-	ENST00000299736	C244	m5C	C6	5'-GGGCCCAGGAGGAGGGCCCGGGG-3'	((((((.......)))))).... (-13.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	23	chr17:16353209-16353231	CENPV	HGNC:29920	ENSG00000166582	GGGCCCAGGAGGAGGGCCCGGGG
hsa_m5C_1193	chr17	16353214	16353215	-	ENST00000299736	C255	m5C	C17	5'-GGGCCCAGGAGGAGGGCCCGGGG-3'	((((((.......)))))).... (-13.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	23	chr17:16353209-16353231	CENPV	HGNC:29920	ENSG00000166582	GGGCCCAGGAGGAGGGCCCGGGG
hsa_m5C_1194	chr17	16353213	16353214	-	ENST00000299736	C256	m5C	C18	5'-GGGCCCAGGAGGAGGGCCCGGGG-3'	((((((.......)))))).... (-13.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	23	chr17:16353209-16353231	CENPV	HGNC:29920	ENSG00000166582	GGGCCCAGGAGGAGGGCCCGGGG
hsa_m5C_1195	chr17	16353212	16353213	-	ENST00000299736	C257	m5C	C19	5'-GGGCCCAGGAGGAGGGCCCGGGG-3'	((((((.......)))))).... (-13.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	23	chr17:16353209-16353231	CENPV	HGNC:29920	ENSG00000166582	GGGCCCAGGAGGAGGGCCCGGGG
hsa_m5C_1196	chr16	22326238	22326239	+	ENST00000299853	C1994	m5C	C4	5'-GGACACGGUGCUGGCCGCCGG-3'	.....(((((.....))))). ( -6.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	21	chr16:22326236-22326256	POLR3E	HGNC:30347	ENSG00000058600	GGACACGGUGCUGGCCGCCGG
hsa_m5C_1197	chr16	22326011	22326012	+	ENST00000299853	C1767	m5C	C4	5'-GGGCUGCCUCUCGGGCGGGCUGCGGG-3'	((.((((((...)))))).))..... (-11.00)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr16:22326009-22326034	POLR3E	HGNC:30347	ENSG00000058600	GGGCUGCCUCUCGGGCGGGCUGCGGG
hsa_m5C_1198	chr15	44288848	44288849	+	ENST00000299957	C131	m5C	C7	5'-GGGGGGCGGGGAGGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr15:44288843-44288857	GOLM2	HGNC:24892	ENSG00000166734	GGGGGGCGGGGAGGG
hsa_m5C_1199	chr11	114312340	114312341	+	ENST00000299964	C817	m5C	C12	5'-GGGCCGGGAGGCAGUAGAGG-3'	..(((....)))........ ( -4.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	20	chr11:114312330-114312349	NNMT	HGNC:7861	ENSG00000166741	GGGCCGGGAGGCAGUAGAGG
hsa_m5C_1200	chr15	89750215	89750216	-	ENST00000300057	C753	m5C	C3	5'-GGCGACGUGCUGGCUCUGUUGGAGACCUGG-3'	(((.....)))((((((...)))).))... ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr15:89750189-89750218	MESP1	HGNC:29658	ENSG00000166823	GGCGACGUGCUGGCUCUGUUGGAGACCUGG
hsa_m5C_1201	chr15	65150177	65150178	-	ENST00000300107	C2736	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr15:65150169-65150183	CLPX	HGNC:2088	ENSG00000166855	GGAGGCUGAGGCAGG
hsa_m5C_1202	chr15	65150171	65150172	-	ENST00000300107	C2742	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr15:65150169-65150183	CLPX	HGNC:2088	ENSG00000166855	GGAGGCUGAGGCAGG
hsa_m5C_1203	chr7	100488919	100488920	+	ENST00000300179	C1358	m5C	C8	5'-GGACCAUCGGGCCGGGCCCGG-3'	.......(((((...))))). ( -8.50)	loop	mRNA	frontal_cortex	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	21	chr7:100488913-100488933	NYAP1	HGNC:22009	ENSG00000166924	GGACCAUCGGGCCGGGCCCGG
hsa_m5C_1204	chr7	100477684	100477685	-	ENST00000300181	C1044	m5C	C25	5'-GGGAAUUCGAGGGGCCUCAGGGGGCGCCGGGGG-3'	......((..((.((((....)))).))..)). (-10.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	33	chr7:100477677-100477709	TSC22D4	HGNC:21696	ENSG00000166925	GGGAAUUCGAGGGGCCUCAGGGGGCGCCGGGGG
hsa_m5C_1205	chr7	100477682	100477683	-	ENST00000300181	C1046	m5C	C27	5'-GGGAAUUCGAGGGGCCUCAGGGGGCGCCGGGGG-3'	......((..((.((((....)))).))..)). (-10.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	33	chr7:100477677-100477709	TSC22D4	HGNC:21696	ENSG00000166925	GGGAAUUCGAGGGGCCUCAGGGGGCGCCGGGGG
hsa_m5C_1206	chr7	100477681	100477682	-	ENST00000300181	C1047	m5C	C28	5'-GGGAAUUCGAGGGGCCUCAGGGGGCGCCGGGGG-3'	......((..((.((((....)))).))..)). (-10.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	33	chr7:100477677-100477709	TSC22D4	HGNC:21696	ENSG00000166925	GGGAAUUCGAGGGGCCUCAGGGGGCGCCGGGGG
hsa_m5C_1207	chr7	100477884	100477885	-	ENST00000300181	C844	m5C	C18	5'-GGGAGCCCAGCCCCGAUCCGGGGGGCAAGGG-3'	.....(((.(((((.......)))))..))) (-14.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	31	chr7:100477872-100477902	TSC22D4	HGNC:21696	ENSG00000166925	GGGAGCCCAGCCCCGAUCCGGGGGGCAAGGG
hsa_m5C_1208	chr7	100477883	100477884	-	ENST00000300181	C845	m5C	C19	5'-GGGAGCCCAGCCCCGAUCCGGGGGGCAAGGG-3'	.....(((.(((((.......)))))..))) (-14.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	31	chr7:100477872-100477902	TSC22D4	HGNC:21696	ENSG00000166925	GGGAGCCCAGCCCCGAUCCGGGGGGCAAGGG
hsa_m5C_1209	chr9	128343242	128343243	+	ENST00000300456	C429	m5C	C9	5'-GGAUCUGGCGGCUGG-3'	NA	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr9:128343235-128343249	SLC27A4	HGNC:10998	ENSG00000167114	GGAUCUGGCGGCUGG
hsa_m5C_1210	chr9	128345351	128345352	+	ENST00000300456	C677	m5C	C3	5'-GGCCCGGGGCCUGG-3'	((((...))))... ( -5.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	14	chr9:128345350-128345363	SLC27A4	HGNC:10998	ENSG00000167114	GGCCCGGGGCCUGG
hsa_m5C_1211	chr9	128345352	128345353	+	ENST00000300456	C678	m5C	C4	5'-GGCCCGGGGCCUGG-3'	((((...))))... ( -5.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr9:128345350-128345363	SLC27A4	HGNC:10998	ENSG00000167114	GGCCCGGGGCCUGG
hsa_m5C_1212	chr17	1422415	1422416	-	ENST00000300574	C2127	m5C	C7	5'-GGGAGGCCGAGGCGGGUGG-3'	.....(((......))).. ( -3.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	19	chr17:1422404-1422422	CRK	HGNC:2362	ENSG00000167193	GGGAGGCCGAGGCGGGUGG
hsa_m5C_1213	chr17	1422414	1422415	-	ENST00000300574	C2128	m5C	C8	5'-GGGAGGCCGAGGCGGGUGG-3'	.....(((......))).. ( -3.10)	loop	mRNA	HeLa,rip antibody: ALYREF;SRV-infected and -uninfected Jurkat	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	30009162;28418038	19	chr17:1422404-1422422	CRK	HGNC:2362	ENSG00000167193	GGGAGGCCGAGGCGGGUGG
hsa_m5C_1214	chr17	1422409	1422410	-	ENST00000300574	C2133	m5C	C13	5'-GGGAGGCCGAGGCGGGUGG-3'	.....(((......))).. ( -3.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	19	chr17:1422404-1422422	CRK	HGNC:2362	ENSG00000167193	GGGAGGCCGAGGCGGGUGG
hsa_m5C_1215	chr17	39671447	39671448	-	ENST00000300658	C2361	m5C	C8	5'-GGGUGGCCCCAGGGCAGGCAGGGG-3'	..((.(((....)))..))..... ( -5.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	24	chr17:39671432-39671455	PGAP3	HGNC:23719	ENSG00000161395	GGGUGGCCCCAGGGCAGGCAGGGG
hsa_m5C_1216	chr17	39671446	39671447	-	ENST00000300658	C2362	m5C	C9	5'-GGGUGGCCCCAGGGCAGGCAGGGG-3'	..((.(((....)))..))..... ( -5.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	24	chr17:39671432-39671455	PGAP3	HGNC:23719	ENSG00000161395	GGGUGGCCCCAGGGCAGGCAGGGG
hsa_m5C_1217	chr17	39671445	39671446	-	ENST00000300658	C2363	m5C	C10	5'-GGGUGGCCCCAGGGCAGGCAGGGG-3'	..((.(((....)))..))..... ( -5.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	24	chr17:39671432-39671455	PGAP3	HGNC:23719	ENSG00000161395	GGGUGGCCCCAGGGCAGGCAGGGG
hsa_m5C_1218	chr11	4605299	4605300	-	ENST00000300747	C467	m5C	C6	5'-GGAACCUGCGGCCUAAUUGGCAGCUGG-3'	....((.((.(((.....))).)).)) ( -9.40)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr11:4605279-4605305	TRIM68	HGNC:21161	ENSG00000167333	GGAACCUGCGGCCUAAUUGGCAGCUGG
hsa_m5C_1219	chr17	82750476	82750477	+	ENST00000300784	C674	m5C	C5	5'-GGAUCUCUGGUCGGGAAACGUGG-3'	...((((.....))))....... ( -2.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr17:82750473-82750495	FN3K	HGNC:24822	ENSG00000167363	GGAUCUCUGGUCGGGAAACGUGG
hsa_m5C_1220	chr19	43607738	43607739	-	ENST00000300811	C647	m5C	C21	5'-GGGAGGGCCGACCAGCUGGGCGGG-3'	.......(((.((....)).))). ( -5.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	24	chr19:43607736-43607759	ZNF428	HGNC:20804	ENSG00000131116	GGGAGGGCCGACCAGCUGGGCGGG
hsa_m5C_1221	chr19	45297812	45297813	+	ENST00000300843	C2033	m5C	C4	5'-GGGCAGGGGGUGGGGGUGGUGGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	23	chr19:45297810-45297832	MARK4	HGNC:13538	ENSG00000007047	GGGCAGGGGGUGGGGGUGGUGGG
hsa_m5C_1222	chr19	45302558	45302559	+	ENST00000300843	C2485	m5C	C8	5'-GGGGGUGCGGGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	14	chr19:45302552-45302565	MARK4	HGNC:13538	ENSG00000007047	GGGGGUGCGGGCGG
hsa_m5C_1223	chr19	45407818	45407819	-	ENST00000300853	C2894	m5C	C3	5'-GGCCUCCCAAAGGAUGGGAUUACAGG-3'	....(((((.....)))))....... ( -6.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chr19:45407796-45407821	ERCC1	HGNC:3433	ENSG00000012061	GGCCUCCCAAAGGAUGGGAUUACAGG
hsa_m5C_1224	chr19	45407817	45407818	-	ENST00000300853	C2895	m5C	C4	5'-GGCCUCCCAAAGGAUGGGAUUACAGG-3'	....(((((.....)))))....... ( -6.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chr19:45407796-45407821	ERCC1	HGNC:3433	ENSG00000012061	GGCCUCCCAAAGGAUGGGAUUACAGG
hsa_m5C_1225	chr19	45407815	45407816	-	ENST00000300853	C2897	m5C	C6	5'-GGCCUCCCAAAGGAUGGGAUUACAGG-3'	....(((((.....)))))....... ( -6.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chr19:45407796-45407821	ERCC1	HGNC:3433	ENSG00000012061	GGCCUCCCAAAGGAUGGGAUUACAGG
hsa_m5C_1226	chr19	45407814	45407815	-	ENST00000300853	C2898	m5C	C7	5'-GGCCUCCCAAAGGAUGGGAUUACAGG-3'	....(((((.....)))))....... ( -6.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chr19:45407796-45407821	ERCC1	HGNC:3433	ENSG00000012061	GGCCUCCCAAAGGAUGGGAUUACAGG
hsa_m5C_1227	chr19	45407813	45407814	-	ENST00000300853	C2899	m5C	C8	5'-GGCCUCCCAAAGGAUGGGAUUACAGG-3'	....(((((.....)))))....... ( -6.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chr19:45407796-45407821	ERCC1	HGNC:3433	ENSG00000012061	GGCCUCCCAAAGGAUGGGAUUACAGG
hsa_m5C_1228	chr16	88719717	88719718	-	ENST00000301015	C6583	m5C	C7	5'-GGG^GUUCCGGCUGG-3'	((....))...... ( -0.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr16:88719711-88719721;88719802-88719804	PIEZO1	HGNC:28993	ENSG00000103335	GGGGUUCCGGCUGG
hsa_m5C_1229	chr16	88719716	88719717	-	ENST00000301015	C6584	m5C	C8	5'-GGG^GUUCCGGCUGG-3'	((....))...... ( -0.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr16:88719711-88719721;88719802-88719804	PIEZO1	HGNC:28993	ENSG00000103335	GGGGUUCCGGCUGG
hsa_m5C_1230	chr16	88734752	88734753	-	ENST00000301015	C2150	m5C	C6	5'-GGUGGCUCGUGGUGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr16:88734744-88734758	PIEZO1	HGNC:28993	ENSG00000103335	GGUGGCUCGUGGUGG
hsa_m5C_1231	chr17	29568737	29568738	+	ENST00000301057	C38	m5C	C11	5'-GGGCGGCGGGCCGGGCCCGGG-3'	......(((((...))))).. ( -8.40)	loop	mRNA	HeLa,With in vitro transcribed m5C spike-ins	m5C-RIP-seq:(Medium)	pqsfinder&qgrs;RNAfold;rG4-seq:(High)	RMVar database	31061524	21	chr17:29568728-29568748	TP53I13	HGNC:25102	ENSG00000167543	GGGCGGCGGGCCGGGCCCGGG
hsa_m5C_1232	chr17	29568738	29568739	+	ENST00000301057	C39	m5C	C12	5'-GGGCGGCGGGCCGGGCCCGGG-3'	......(((((...))))).. ( -8.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	21	chr17:29568728-29568748	TP53I13	HGNC:25102	ENSG00000167543	GGGCGGCGGGCCGGGCCCGGG
hsa_m5C_1233	chr17	29568744	29568745	+	ENST00000301057	C45	m5C	C18	5'-GGGCGGCGGGCCGGGCCCGGG-3'	......(((((...))))).. ( -8.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	21	chr17:29568728-29568748	TP53I13	HGNC:25102	ENSG00000167543	GGGCGGCGGGCCGGGCCCGGG
hsa_m5C_1234	chr19	41219322	41219323	+	ENST00000301178	C101	m5C	C11	5'-GGGGGGAGGGCCGGG-3'	..((......))... ( -1.70)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	15	chr19:41219313-41219327	AXL	HGNC:905	ENSG00000167601	GGGGGGAGGGCCGGG
hsa_m5C_1235	chr19	41219323	41219324	+	ENST00000301178	C102	m5C	C12	5'-GGGGGGAGGGCCGGG-3'	..((......))... ( -1.70)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMBase database;m6A-Atlas database	28418038	15	chr19:41219313-41219327	AXL	HGNC:905	ENSG00000167601	GGGGGGAGGGCCGGG
hsa_m5C_1236	chr19	42227522	42227523	+	ENST00000301215	C3304	m5C	C7	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr19:42227517-42227531	ZNF526	HGNC:29415	ENSG00000167625	GGGAGGCCGAGGCGG
hsa_m5C_1237	chr19	42227523	42227524	+	ENST00000301215	C3305	m5C	C8	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr19:42227517-42227531	ZNF526	HGNC:29415	ENSG00000167625	GGGAGGCCGAGGCGG
hsa_m5C_1238	chr19	42227528	42227529	+	ENST00000301215	C3310	m5C	C13	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr19:42227517-42227531	ZNF526	HGNC:29415	ENSG00000167625	GGGAGGCCGAGGCGG
hsa_m5C_1239	chr19	4453470	4453471	-	ENST00000301281	C396	m5C	C16	5'-GGAGCCCCGAGGCCCCAGGGACCAACGUG^G-3'	((.(((....))).)).............. ( -6.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr19:4452492-4452492;4453458-4453486	UBXN6	HGNC:14928	ENSG00000167671	GGAGCCCCGAGGCCCCAGGGACCAACGUGG
hsa_m5C_1240	chr19	4446370	4446371	-	ENST00000301281	C1060	m5C	C4	5'-GGCCAUGCGGGAGAAGGAGGAGCAGCGGG-3'	..((.(((.............)))..)). ( -3.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr19:4446346-4446374	UBXN6	HGNC:14928	ENSG00000167671	GGCCAUGCGGGAGAAGGAGGAGCAGCGGG
hsa_m5C_1241	chr17	1570738	1570739	-	ENST00000301335	C6662	m5C	C7	5'-GGGAGGCCGAGGCGGG-3'	......(((...))). ( -1.70)	loop	mRNA	spleen	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	16	chr17:1570730-1570745	SLC43A2	HGNC:23087	ENSG00000167703	GGGAGGCCGAGGCGGG
hsa_m5C_1242	chr17	1570737	1570738	-	ENST00000301335	C6663	m5C	C8	5'-GGGAGGCCGAGGCGGG-3'	......(((...))). ( -1.70)	loop	mRNA	spleen	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	16	chr17:1570730-1570745	SLC43A2	HGNC:23087	ENSG00000167703	GGGAGGCCGAGGCGGG
hsa_m5C_1243	chr19	12796936	12796937	-	ENST00000301522	C811	m5C	C7	5'-GGAGGGCUAGGCCAAGG-3'	....(((...))).... ( -2.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr19:12796927-12796943	PRDX2	HGNC:9353	ENSG00000167815	GGAGGGCUAGGCCAAGG
hsa_m5C_1244	chr17	42189616	42189617	-	ENST00000301671	C2121	m5C	C19	5'-GGAUGGGGAGUCCUUGGCCAGGG-3'	((..((((...))))..)).... ( -4.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	23	chr17:42189613-42189635	GHDC	HGNC:24438	ENSG00000167925	GGAUGGGGAGUCCUUGGCCAGGG
hsa_m5C_1245	chr17	42191066	42191067	-	ENST00000301671	C1475	m5C	C14	5'-GGCCGAGGCCCAGCAGGGCAAGG-3'	..((...((((....))))..)) ( -8.40)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	23	chr17:42191058-42191080	GHDC	HGNC:24438	ENSG00000167925	GGCCGAGGCCCAGCAGGGCAAGG
hsa_m5C_1246	chr16	2289609	2289610	-	ENST00000301732	C3218	m5C	C12	5'-G^GGUCGGGAAGCUGGUGG-3'	...((((....))))... ( -1.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	18	chr16:2289604-2289620;2292140-2292140	ABCA3	HGNC:33	ENSG00000167972	GGGUCGGGAAGCUGGUGG
hsa_m5C_1247	chr11	62726809	62726810	-	ENST00000301785	C648	m5C	C15	5'-GGAGCCCCCGGAGGCGG-3'	...(((......))).. ( -3.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr11:62726808-62726824	HNRNPUL2	HGNC:25451	ENSG00000214753	GGAGCCCCCGGAGGCGG
hsa_m5C_1248	chr11	62762995	62762996	+	ENST00000301788	C321	m5C	C9	5'-GGGGAGGUCGUGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	13	chr11:62762988-62763000	POLR2G	HGNC:9194	ENSG00000168002	GGGGAGGUCGUGG
hsa_m5C_1249	chr3	41455578	41455579	-	ENST00000301831	C3546	m5C	C5	5'-GGCUCAGGAGAGGACCCUCAGG-3'	..((.(((.......))).)). ( -2.50)	loop	mRNA	liver,lung;lung	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	22	chr3:41455562-41455583	ULK4	HGNC:15784	ENSG00000168038	GGCUCAGGAGAGGACCCUCAGG
hsa_m5C_1250	chr11	70203415	70203416	+	ENST00000301838	C121	m5C	C6	5'-GGGCGCACGGAGGGCCGGG-3'	.(((.........)))... ( -4.30)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	19	chr11:70203411-70203429	FADD	HGNC:3573	ENSG00000168040	GGGCGCACGGAGGGCCGGG
hsa_m5C_1251	chr11	70203424	70203425	+	ENST00000301838	C130	m5C	C15	5'-GGGCGCACGGAGGGCCGGG-3'	.(((.........)))... ( -4.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	19	chr11:70203411-70203429	FADD	HGNC:3573	ENSG00000168040	GGGCGCACGGAGGGCCGGG
hsa_m5C_1252	chr19	45885356	45885357	-	ENST00000302165	C785	m5C	C4	5'-GGGCUGGGCCGUGAGGAGGCCGUGGCUGAGGGG-3'	.((((.((((.......))))..))))...... (-12.30)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	33	chr19:45885328-45885360	IRF2BP1	HGNC:21728	ENSG00000170604	GGGCUGGGCCGUGAGGAGGCCGUGGCUGAGGGG
hsa_m5C_1253	chr16	70373006	70373007	+	ENST00000302243	C2547	m5C	C17	5'-GGGAGGCUGAGGCGGGCGG-3'	.....(((......))).. ( -2.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	19	chr16:70372991-70373009	DDX19A	HGNC:25628	ENSG00000168872	GGGAGGCUGAGGCGGGCGG
hsa_m5C_1254	chr17	80113258	80113259	+	ENST00000302262	C2424	m5C	C13	5'-GGCCCAGCAGGCCAUGAGGAAGG-3'	((((.....)))).......... ( -7.00)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr17:80113247-80113269	GAA	HGNC:4065	ENSG00000171298	GGCCCAGCAGGCCAUGAGGAAGG
hsa_m5C_1255	chr1	23085547	23085548	-	ENST00000302291	C6894	m5C	C11	5'-GGAAUGGGGACCCAGAGGCUGGG-3'	..........(((((...))))) ( -5.90)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	23	chr1:23085536-23085558	LUZP1	HGNC:14985	ENSG00000169641	GGAAUGGGGACCCAGAGGCUGGG
hsa_m5C_1256	chr1	23085546	23085547	-	ENST00000302291	C6895	m5C	C12	5'-GGAAUGGGGACCCAGAGGCUGGG-3'	..........(((((...))))) ( -5.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr1:23085536-23085558	LUZP1	HGNC:14985	ENSG00000169641	GGAAUGGGGACCCAGAGGCUGGG
hsa_m5C_1257	chr1	23085545	23085546	-	ENST00000302291	C6896	m5C	C13	5'-GGAAUGGGGACCCAGAGGCUGGG-3'	..........(((((...))))) ( -5.90)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	23	chr1:23085536-23085558	LUZP1	HGNC:14985	ENSG00000169641	GGAAUGGGGACCCAGAGGCUGGG
hsa_m5C_1258	chr22	27797172	27797173	-	ENST00000302326	C4584	m5C	C8	5'-GGGGGCCCGGGCCAUCCGGGCACUCCGGG-3'	((((((((((.....)))))).))))... (-19.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr22:27797152-27797180	MN1	HGNC:7180	ENSG00000169184	GGGGGCCCGGGCCAUCCGGGCACUCCGGG
hsa_m5C_1259	chr17	78997323	78997324	-	ENST00000302345	C794	m5C	C7	5'-GGACACCGGCUGGGAUUCGG-3'	(((..((....))..))).. ( -3.80)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	20	chr17:78997311-78997330	CANT1	HGNC:19721	ENSG00000171302	GGACACCGGCUGGGAUUCGG
hsa_m5C_1260	chr3	44861936	44861937	+	ENST00000302392	C26	m5C	C19	5'-GGCAACAUGGCCGAGAGGCCGGG-3'	........((((....))))... ( -8.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	23	chr3:44861919-44861941	TMEM42	HGNC:28444	ENSG00000169964	GGCAACAUGGCCGAGAGGCCGGG
hsa_m5C_1261	chr3	44861937	44861938	+	ENST00000302392	C27	m5C	C20	5'-GGCAACAUGGCCGAGAGGCCGGG-3'	........((((....))))... ( -8.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	23	chr3:44861919-44861941	TMEM42	HGNC:28444	ENSG00000169964	GGCAACAUGGCCGAGAGGCCGGG
hsa_m5C_1262	chr10	102644525	102644526	+	ENST00000302424	C32	m5C	C21	5'-GGGGCCGGCUGGGGCCGGAGCUCGGGG-3'	(((.(((((....)))))..))).... (-12.00)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31061524	27	chr10:102644506-102644532	TRIM8	HGNC:15579	ENSG00000171206	GGGGCCGGCUGGGGCCGGAGCUCGGGG
hsa_m5C_1263	chr10	102644527	102644528	+	ENST00000302424	C34	m5C	C23	5'-GGGGCCGGCUGGGGCCGGAGCUCGGGG-3'	(((.(((((....)))))..))).... (-12.00)	loop	mRNA	HeLa,rip antibody: ALYREF;Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	27	chr10:102644506-102644532	TRIM8	HGNC:15579	ENSG00000171206	GGGGCCGGCUGGGGCCGGAGCUCGGGG
hsa_m5C_1264	chr3	48177883	48177884	-	ENST00000302506	C1124	m5C	C13	5'-GGAUGAUGGCUUCGUGGACCUUCUCGAUGG-3'	.((.((.((((....)).)).))))..... ( -4.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr3:48177867-48177896	CDC25A	HGNC:1725	ENSG00000164045	GGAUGAUGGCUUCGUGGACCUUCUCGAUGG
hsa_m5C_1265	chr3	48177877	48177878	-	ENST00000302506	C1130	m5C	C19	5'-GGAUGAUGGCUUCGUGGACCUUCUCGAUGG-3'	.((.((.((((....)).)).))))..... ( -4.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr3:48177867-48177896	CDC25A	HGNC:1725	ENSG00000164045	GGAUGAUGGCUUCGUGGACCUUCUCGAUGG
hsa_m5C_1266	chr3	48177873	48177874	-	ENST00000302506	C1134	m5C	C23	5'-GGAUGAUGGCUUCGUGGACCUUCUCGAUGG-3'	.((.((.((((....)).)).))))..... ( -4.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr3:48177867-48177896	CDC25A	HGNC:1725	ENSG00000164045	GGAUGAUGGCUUCGUGGACCUUCUCGAUGG
hsa_m5C_1267	chr19	12792263	12792264	+	ENST00000302754	C779	m5C	C17	5'-GGGCGCUACCGGGGGGCCCCCGGCUGGGCCCGGGGG-3'	((((.(((((((((...)))))).)))))))..... (-22.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	36	chr19:12792248-12792283	JUNB	HGNC:6205	ENSG00000171223	GGGCGCUACCGGGGGGCCCCCGGCUGGGCCCGGGGG
hsa_m5C_1268	chr19	12792264	12792265	+	ENST00000302754	C780	m5C	C18	5'-GGGCGCUACCGGGGGGCCCCCGGCUGGGCCCGGGGG-3'	((((.(((((((((...)))))).)))))))..... (-22.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	36	chr19:12792248-12792283	JUNB	HGNC:6205	ENSG00000171223	GGGCGCUACCGGGGGGCCCCCGGCUGGGCCCGGGGG
hsa_m5C_1269	chr19	12792265	12792266	+	ENST00000302754	C781	m5C	C19	5'-GGGCGCUACCGGGGGGCCCCCGGCUGGGCCCGGGGG-3'	((((.(((((((((...)))))).)))))))..... (-22.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	36	chr19:12792248-12792283	JUNB	HGNC:6205	ENSG00000171223	GGGCGCUACCGGGGGGCCCCCGGCUGGGCCCGGGGG
hsa_m5C_1270	chr19	12792266	12792267	+	ENST00000302754	C782	m5C	C20	5'-GGGCGCUACCGGGGGGCCCCCGGCUGGGCCCGGGGG-3'	((((.(((((((((...)))))).)))))))..... (-22.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	36	chr19:12792248-12792283	JUNB	HGNC:6205	ENSG00000171223	GGGCGCUACCGGGGGGCCCCCGGCUGGGCCCGGGGG
hsa_m5C_1271	chr19	12792267	12792268	+	ENST00000302754	C783	m5C	C21	5'-GGGCGCUACCGGGGGGCCCCCGGCUGGGCCCGGGGG-3'	((((.(((((((((...)))))).)))))))..... (-22.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	36	chr19:12792248-12792283	JUNB	HGNC:6205	ENSG00000171223	GGGCGCUACCGGGGGGCCCCCGGCUGGGCCCGGGGG
hsa_m5C_1272	chr19	12792275	12792276	+	ENST00000302754	C791	m5C	C29	5'-GGGCGCUACCGGGGGGCCCCCGGCUGGGCCCGGGGG-3'	((((.(((((((((...)))))).)))))))..... (-22.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	36	chr19:12792248-12792283	JUNB	HGNC:6205	ENSG00000171223	GGGCGCUACCGGGGGGCCCCCGGCUGGGCCCGGGGG
hsa_m5C_1273	chr19	12792276	12792277	+	ENST00000302754	C792	m5C	C30	5'-GGGCGCUACCGGGGGGCCCCCGGCUGGGCCCGGGGG-3'	((((.(((((((((...)))))).)))))))..... (-22.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	36	chr19:12792248-12792283	JUNB	HGNC:6205	ENSG00000171223	GGGCGCUACCGGGGGGCCCCCGGCUGGGCCCGGGGG
hsa_m5C_1274	chr19	12791998	12791999	+	ENST00000302754	C514	m5C	C18	5'-GGUCAGGGCUCGGACACCGG-3'	.(((........)))..... ( -1.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr19:12791982-12792001	JUNB	HGNC:6205	ENSG00000171223	GGUCAGGGCUCGGACACCGG
hsa_m5C_1275	chr19	9607983	9607984	-	ENST00000302851	C3874	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	frontal_cortex	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr19:9607981-9607995	ZNF561	HGNC:28684	ENSG00000171469	GGAGGCUGAGGCAGG
hsa_m5C_1276	chr19	9608113	9608114	-	ENST00000302851	C3744	m5C	C17	5'-GGGAGGCCGAGGUGGGCGGAUCACG-3'	((...(((......)))...))... ( -6.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	25	chr19:9608106-9608130	ZNF561	HGNC:28684	ENSG00000171469	GGGAGGCCGAGGUGGGCGGAUCACG
hsa_m5C_1277	chr19	9608108	9608109	-	ENST00000302851	C3749	m5C	C22	5'-GGGAGGCCGAGGUGGGCGGAUCACG-3'	((...(((......)))...))... ( -6.20)	bulge	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	25	chr19:9608106-9608130	ZNF561	HGNC:28684	ENSG00000171469	GGGAGGCCGAGGUGGGCGGAUCACG
hsa_m5C_1278	chr19	9608106	9608107	-	ENST00000302851	C3751	m5C	C24	5'-GGGAGGCCGAGGUGGGCGGAUCACG-3'	((...(((......)))...))... ( -6.20)	bulge	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	25	chr19:9608106-9608130	ZNF561	HGNC:28684	ENSG00000171469	GGGAGGCCGAGGUGGGCGGAUCACG
hsa_m5C_1279	chr16	2527779	2527780	+	ENST00000302956	C517	m5C	C24	5'-GGGGCAGGGGUCCUCG^GGCUGCACCUGGAGG-3'	....((((((((....))))...)))).... ( -8.80)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	31	chr16:2527600-2527615;2527773-2527787	AMDHD2	HGNC:24262	ENSG00000162066	GGGGCAGGGGUCCUCGGGCUGCACCUGGAGG
hsa_m5C_1280	chr16	2527780	2527781	+	ENST00000302956	C518	m5C	C25	5'-GGGGCAGGGGUCCUCG^GGCUGCACCUGGAGG-3'	....((((((((....))))...)))).... ( -8.80)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	31	chr16:2527600-2527615;2527773-2527787	AMDHD2	HGNC:24262	ENSG00000162066	GGGGCAGGGGUCCUCGGGCUGCACCUGGAGG
hsa_m5C_1281	chr2	45009194	45009195	-	ENST00000303077	C258	m5C	C5	5'-GGCCCGGACGGCCCGG-3'	((((.....))))... ( -6.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr2:45009184-45009199	SIX2	HGNC:10888	ENSG00000170577	GGCCCGGACGGCCCGG
hsa_m5C_1282	chr2	45009185	45009186	-	ENST00000303077	C267	m5C	C14	5'-GGCCCGGACGGCCCGG-3'	((((.....))))... ( -6.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr2:45009184-45009199	SIX2	HGNC:10888	ENSG00000170577	GGCCCGGACGGCCCGG
hsa_m5C_1283	chr2	45009138	45009139	-	ENST00000303077	C314	m5C	C8	5'-GGGCGCGCGCGGGCGGGCGGG-3'	..((.(((....))).))... ( -9.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	21	chr2:45009126-45009146	SIX2	HGNC:10888	ENSG00000170577	GGGCGCGCGCGGGCGGGCGGG
hsa_m5C_1284	chr2	45009136	45009137	-	ENST00000303077	C316	m5C	C10	5'-GGGCGCGCGCGGGCGGGCGGG-3'	..((.(((....))).))... ( -9.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	21	chr2:45009126-45009146	SIX2	HGNC:10888	ENSG00000170577	GGGCGCGCGCGGGCGGGCGGG
hsa_m5C_1285	chr19	5828103	5828104	+	ENST00000303212	C1308	m5C	C22	5'-GGCCUACGAGGACGAGGUGUCCUUCCUGG-3'	..((...((((((.....))))))...)) ( -8.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr19:5828083-5828111	NRTN	HGNC:8007	ENSG00000171119	GGCCUACGAGGACGAGGUGUCCUUCCUGG
hsa_m5C_1286	chr17	62691001	62691002	+	ENST00000303375	C4199	m5C	C5	5'-GGGGCCCCCGGGCUUGG-3'	.(((((....))))).. ( -5.00)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038;22344696	17	chr17:62690998-62691014	MRC2	HGNC:16875	ENSG00000011028	GGGGCCCCCGGGCUUGG
hsa_m5C_1287	chr17	62691002	62691003	+	ENST00000303375	C4200	m5C	C6	5'-GGGGCCCCCGGGCUUGG-3'	.(((((....))))).. ( -5.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	17	chr17:62690998-62691014	MRC2	HGNC:16875	ENSG00000011028	GGGGCCCCCGGGCUUGG
hsa_m5C_1288	chr17	62691003	62691004	+	ENST00000303375	C4201	m5C	C7	5'-GGGGCCCCCGGGCUUGG-3'	.(((((....))))).. ( -5.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	17	chr17:62690998-62691014	MRC2	HGNC:16875	ENSG00000011028	GGGGCCCCCGGGCUUGG
hsa_m5C_1289	chr4	1289917	1289918	+	ENST00000303400	C28	m5C	C3	5'-GGCGGUGCAGGAGUCGG-3'	(((.........))).. ( -1.60)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	17	chr4:1289916-1289932	MAEA	HGNC:13731	ENSG00000090316	GGCGGUGCAGGAGUCGG
hsa_m5C_1290	chr9	134040167	134040168	-	ENST00000303407	C1704	m5C	C4	5'-GGACAAGGAGAAGGAGAAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr9:134040152-134040171	BRD3	HGNC:1104	ENSG00000169925	GGACAAGGAGAAGGAGAAGG
hsa_m5C_1291	chr4	39977570	39977571	-	ENST00000303538	C341	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	11	chr4:39977563-39977573	PDS5A	HGNC:29088	ENSG00000121892	GGCGGCGGCGG
hsa_m5C_1292	chr4	39977567	39977568	-	ENST00000303538	C344	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;rG4-seq:(High)	RMBase database;m6A-Atlas database	28418038	11	chr4:39977563-39977573	PDS5A	HGNC:29088	ENSG00000121892	GGCGGCGGCGG
hsa_m5C_1293	chr4	39977579	39977580	-	ENST00000303538	C332	m5C	C12	5'-GGGCGGGCGGGCGGCG-3'	..((......)).... ( -2.00)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	16	chr4:39977576-39977591	PDS5A	HGNC:29088	ENSG00000121892	GGGCGGGCGGGCGGCG
hsa_m5C_1294	chr4	39977576	39977577	-	ENST00000303538	C335	m5C	C15	5'-GGGCGGGCGGGCGGCG-3'	..((......)).... ( -2.00)	bulge	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	16	chr4:39977576-39977591	PDS5A	HGNC:29088	ENSG00000121892	GGGCGGGCGGGCGGCG
hsa_m5C_1295	chr7	100088980	100088981	+	ENST00000303904	C13	m5C	C4	5'-GGGCGCGGGGAAAAUGGCGGCGGCGG-3'	...(((..........)))....... ( -3.10)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	28418038	26	chr7:100088978-100089003	COPS6	HGNC:21749	ENSG00000168090	GGGCGCGGGGAAAAUGGCGGCGGCGG
hsa_m5C_1296	chr7	100088982	100088983	+	ENST00000303904	C15	m5C	C6	5'-GGGCGCGGGGAAAAUGGCGGCGGCGG-3'	...(((..........)))....... ( -3.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	26	chr7:100088978-100089003	COPS6	HGNC:21749	ENSG00000168090	GGGCGCGGGGAAAAUGGCGGCGGCGG
hsa_m5C_1297	chr2	235494264	235494265	+	ENST00000304032	C223	m5C	C6	5'-GGGGUCGGCCCUCGGCCCCGG-3'	(((((((.....))))))).. (-13.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr2:235494260-235494280	AGAP1	HGNC:16922	ENSG00000157985	GGGGUCGGCCCUCGGCCCCGG
hsa_m5C_1298	chr14	73491267	73491268	+	ENST00000304061	C336	m5C	C6	5'-GGCGGCGGUGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	11	chr14:73491263-73491273	RIOX1	HGNC:20968	ENSG00000170468	GGCGGCGGUGG
hsa_m5C_1299	chr15	83005402	83005403	-	ENST00000304177	C688	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr15:83005394-83005408	C15orf40	HGNC:28443	ENSG00000169609	GGAGGCUGAGGCAGG
hsa_m5C_1300	chr6	26156820	26156821	+	ENST00000304218	C493	m5C	C12	5'-GGCGACGGGGGCGG-3'	.((.......)).. ( -1.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMVar database	28418038	14	chr6:26156810-26156823	H1-4	HGNC:4718	ENSG00000168298	GGCGACGGGGGCGG
hsa_m5C_1301	chr16	4696781	4696782	-	ENST00000304283	C2501	m5C	C16	5'-GGCCAGAGGAUCAGGCCCCGG-3'	((((.((...)).)))).... ( -6.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr16:4696777-4696797	ANKS3	HGNC:29422	ENSG00000168096	GGCCAGAGGAUCAGGCCCCGG
hsa_m5C_1302	chr16	4696780	4696781	-	ENST00000304283	C2502	m5C	C17	5'-GGCCAGAGGAUCAGGCCCCGG-3'	((((.((...)).)))).... ( -6.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr16:4696777-4696797	ANKS3	HGNC:29422	ENSG00000168096	GGCCAGAGGAUCAGGCCCCGG
hsa_m5C_1303	chr16	4696778	4696779	-	ENST00000304283	C2504	m5C	C19	5'-GGCCAGAGGAUCAGGCCCCGG-3'	((((.((...)).)))).... ( -6.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr16:4696777-4696797	ANKS3	HGNC:29422	ENSG00000168096	GGCCAGAGGAUCAGGCCCCGG
hsa_m5C_1304	chr15	41534766	41534767	-	ENST00000304330	C825	m5C	C3	5'-GGCCAUGGCUCCUGAGGAGAUCCUGCAGG-3'	(((....)))(((((((....))).)))) ( -8.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr15:41534741-41534769	RPAP1	HGNC:24567	ENSG00000103932	GGCCAUGGCUCCUGAGGAGAUCCUGCAGG
hsa_m5C_1305	chr15	41534765	41534766	-	ENST00000304330	C826	m5C	C4	5'-GGCCAUGGCUCCUGAGGAGAUCCUGCAGG-3'	(((....)))(((((((....))).)))) ( -8.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr15:41534741-41534769	RPAP1	HGNC:24567	ENSG00000103932	GGCCAUGGCUCCUGAGGAGAUCCUGCAGG
hsa_m5C_1306	chr2	232484094	232484095	-	ENST00000304546	C1530	m5C	C9	5'-GGAGCUGGCCCGGGUCUGCUUGG-3'	.((((.(((....))).)))).. ( -6.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	23	chr2:232484081-232484103	ECEL1	HGNC:3147	ENSG00000171551	GGAGCUGGCCCGGGUCUGCUUGG
hsa_m5C_1307	chr2	232484093	232484094	-	ENST00000304546	C1531	m5C	C10	5'-GGAGCUGGCCCGGGUCUGCUUGG-3'	.((((.(((....))).)))).. ( -6.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	23	chr2:232484081-232484103	ECEL1	HGNC:3147	ENSG00000171551	GGAGCUGGCCCGGGUCUGCUUGG
hsa_m5C_1308	chr2	232484092	232484093	-	ENST00000304546	C1532	m5C	C11	5'-GGAGCUGGCCCGGGUCUGCUUGG-3'	.((((.(((....))).)))).. ( -6.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	23	chr2:232484081-232484103	ECEL1	HGNC:3147	ENSG00000171551	GGAGCUGGCCCGGGUCUGCUUGG
hsa_m5C_1309	chr6	42978881	42978882	-	ENST00000304611	C300	m5C	C4	5'-GGGCCUGGGUGCGGGCGCGGG-3'	..(((((....)))))..... ( -8.40)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	21	chr6:42978865-42978885	PEX6	HGNC:8859	ENSG00000124587	GGGCCUGGGUGCGGGCGCGGG
hsa_m5C_1310	chr6	42978880	42978881	-	ENST00000304611	C301	m5C	C5	5'-GGGCCUGGGUGCGGGCGCGGG-3'	..(((((....)))))..... ( -8.40)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	21	chr6:42978865-42978885	PEX6	HGNC:8859	ENSG00000124587	GGGCCUGGGUGCGGGCGCGGG
hsa_m5C_1311	chr16	28211669	28211670	-	ENST00000304658	C296	m5C	C10	5'-GGGUCGGGCCCGGGCGGG-3'	((((...))))....... ( -4.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database	28418038	18	chr16:28211662-28211679	XPO6	HGNC:19733	ENSG00000169180	GGGUCGGGCCCGGGCGGG
hsa_m5C_1312	chr14	70988622	70988623	+	ENST00000304743	C2760	m5C	C3	5'-GGCGCCAGGCAGUACGGCGCCGG-3'	((((((.........)))))).. (-12.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr14:70988621-70988643	PCNX1	HGNC:19740	ENSG00000100731	GGCGCCAGGCAGUACGGCGCCGG
hsa_m5C_1313	chr14	70988624	70988625	+	ENST00000304743	C2762	m5C	C5	5'-GGCGCCAGGCAGUACGGCGCCGG-3'	((((((.........)))))).. (-12.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr14:70988621-70988643	PCNX1	HGNC:19740	ENSG00000100731	GGCGCCAGGCAGUACGGCGCCGG
hsa_m5C_1314	chr5	133105607	133105608	+	ENST00000304858	C3933	m5C	C23	5'-GGAGUGAGGCAUUUUGGAAACUCCAAGG-3'	(((((....((...))...))))).... ( -6.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr5:133105586-133105613	HSPA4	HGNC:5237	ENSG00000170606	GGAGUGAGGCAUUUUGGAAACUCCAAGG
hsa_m5C_1315	chr5	133105608	133105609	+	ENST00000304858	C3934	m5C	C24	5'-GGAGUGAGGCAUUUUGGAAACUCCAAGG-3'	(((((....((...))...))))).... ( -6.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr5:133105586-133105613	HSPA4	HGNC:5237	ENSG00000170606	GGAGUGAGGCAUUUUGGAAACUCCAAGG
hsa_m5C_1316	chr19	29213050	29213051	-	ENST00000304863	C101	m5C	C8	5'-GGGGUGGCGG-3'	NA	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038;30872485	10	chr19:29213049-29213058	UQCRFS1	HGNC:12587	ENSG00000169021	GGGGUGGCGG
hsa_m5C_1317	chr7	65979836	65979837	-	ENST00000304895	C501	m5C	C4	5'-GGUCCAGGUGGGG-3'	..(((....))). ( -1.00)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	13	chr7:65979828-65979840	GUSB	HGNC:4696	ENSG00000169919	GGUCCAGGUGGGG
hsa_m5C_1318	chr8	126554253	126554254	-	ENST00000304916	C3677	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr8:126554251-126554265	LRATD2	HGNC:24166	ENSG00000168672	GGAGGCUGAGGCAGG
hsa_m5C_1319	chr11	111728692	111728693	+	ENST00000304987	C7460	m5C	C6	5'-GGAGGCCAAGGCAGG-3'	....((....))... ( -1.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr11:111728688-111728702	SIK2	HGNC:21680	ENSG00000170145	GGAGGCCAAGGCAGG
hsa_m5C_1320	chr11	111728822	111728823	+	ENST00000304987	C7590	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Muscle;HeLa	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038;31061524	15	chr11:111728818-111728832	SIK2	HGNC:21680	ENSG00000170145	GGAGGCUGAGGCAGG
hsa_m5C_1321	chr11	111728828	111728829	+	ENST00000304987	C7596	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,With in vitro transcribed m5C spike-ins;HeLa,siControl;Muscle;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	15	chr11:111728818-111728832	SIK2	HGNC:21680	ENSG00000170145	GGAGGCUGAGGCAGG
hsa_m5C_1322	chr8	27805180	27805181	+	ENST00000305188	C3619	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr8:27805176-27805190	ESCO2	HGNC:27230	ENSG00000171320	GGAGGCUGAGGCAGG
hsa_m5C_1323	chr8	27805141	27805142	+	ENST00000305188	C3580	m5C	C3	5'-GGCGCGGUGGCGG-3'	..(((....))). ( -4.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	22344696	13	chr8:27805140-27805152	ESCO2	HGNC:27230	ENSG00000171320	GGCGCGGUGGCGG
hsa_m5C_1324	chr8	27805143	27805144	+	ENST00000305188	C3582	m5C	C5	5'-GGCGCGGUGGCGG-3'	..(((....))). ( -4.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	13	chr8:27805140-27805152	ESCO2	HGNC:27230	ENSG00000171320	GGCGCGGUGGCGG
hsa_m5C_1325	chr8	27805149	27805150	+	ENST00000305188	C3588	m5C	C11	5'-GGCGCGGUGGCGG-3'	..(((....))). ( -4.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	13	chr8:27805140-27805152	ESCO2	HGNC:27230	ENSG00000171320	GGCGCGGUGGCGG
hsa_m5C_1326	chr2	96861162	96861163	-	ENST00000305476	C2207	m5C	C16	5'-GGUGACCUUGGAGGCCCGG-3'	((...(((...))).)).. ( -2.20)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr2:96861160-96861178	SEMA4C	HGNC:10731	ENSG00000168758	GGUGACCUUGGAGGCCCGG
hsa_m5C_1327	chr17	1781005	1781006	-	ENST00000305513	C2884	m5C	C6	5'-GGAGGCGGAGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	11	chr17:1781001-1781011	SMYD4	HGNC:21067	ENSG00000186532	GGAGGCGGAGG
hsa_m5C_1328	chr17	1781216	1781217	-	ENST00000305513	C2673	m5C	C4	5'-GGCCAGGUAUGGUGG-3'	.((((....)))).. ( -3.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr17:1781206-1781220	SMYD4	HGNC:21067	ENSG00000186532	GGCCAGGUAUGGUGG
hsa_m5C_1329	chr3	49133013	49133014	-	ENST00000305544	C37	m5C	C6	5'-GGGACCGCUGGACAGACCUGGGAACUGACAGAGGGCCUGGAGGG-3'	(((.((.(((..(((.........))).))).)).)))...... (-10.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	44	chr3:49132976-49133019	LAMB2	HGNC:6487	ENSG00000172037	GGGACCGCUGGACAGACCUGGGAACUGACAGAGGGCCUGGAGGG
hsa_m5C_1330	chr3	49123038	49123039	-	ENST00000305544	C4421	m5C	C15	5'-G^GUGUGUGGGGCACCAGGGG-3'	(((((.....)))))..... ( -7.20)	loop	mRNA	HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;38168991	28418038;38168991	20	chr3:49123034-49123052;49123132-49123132	LAMB2	HGNC:6487	ENSG00000172037	GGUGUGUGGGGCACCAGGGG
hsa_m5C_1331	chr2	241686737	241686738	-	ENST00000305784	C78	m5C	C14	5'-GGAGGGCGUGGACCGCGCCGG-3'	....((((((...)))))).. ( -9.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr2:241686731-241686751	DTYMK	HGNC:3061	ENSG00000168393	GGAGGGCGUGGACCGCGCCGG
hsa_m5C_1332	chr2	241686735	241686736	-	ENST00000305784	C80	m5C	C16	5'-GGAGGGCGUGGACCGCGCCGG-3'	....((((((...)))))).. ( -9.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr2:241686731-241686751	DTYMK	HGNC:3061	ENSG00000168393	GGAGGGCGUGGACCGCGCCGG
hsa_m5C_1333	chr16	81030647	81030648	+	ENST00000305850	C3091	m5C	C3	5'-GGCUGAGGCAGGAGAACUGGUUGAACCGG-3'	((...((.(((.....))).))...)).. ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr16:81030646-81030674	CENPN	HGNC:30873	ENSG00000166451	GGCUGAGGCAGGAGAACUGGUUGAACCGG
hsa_m5C_1334	chr22	23180575	23180576	+	ENST00000305877	C68	m5C	C9	5'-GGAGGCGGCGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	11	chr22:23180568-23180578	BCR	HGNC:1014	ENSG00000186716	GGAGGCGGCGG
hsa_m5C_1335	chr22	23253937	23253938	+	ENST00000305877	C1871	m5C	C13	5'-GGGCAGGGGCAGCCGGGAUGCGCUGGUCUCGGG-3'	..((....))..(((((((......))))))). (-10.80)	loop	mRNA	SNB19;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database;RMVar database	28418038	33	chr22:23253926-23253958	BCR	HGNC:1014	ENSG00000186716	GGGCAGGGGCAGCCGGGAUGCGCUGGUCUCGGG
hsa_m5C_1336	chr2	10052427	10052428	+	ENST00000305883	C1627	m5C	C11	5'-GGCUGGCAGGCAGAGG-3'	.(((....)))..... ( -2.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr2:10052418-10052433	KLF11	HGNC:11811	ENSG00000172059	GGCUGGCAGGCAGAGG
hsa_m5C_1337	chr1	228487720	228487721	+	ENST00000305943	C340	m5C	C6	5'-GGAGGCGGCCGCGG-3'	((......)).... ( -0.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	14	chr1:228487716-228487729	RNF187	HGNC:27146	ENSG00000168159	GGAGGCGGCCGCGG
hsa_m5C_1338	chr1	228487726	228487727	+	ENST00000305943	C346	m5C	C12	5'-GGAGGCGGCCGCGG-3'	((......)).... ( -0.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr1:228487716-228487729	RNF187	HGNC:27146	ENSG00000168159	GGAGGCGGCCGCGG
hsa_m5C_1339	chr2	8877158	8877159	-	ENST00000305997	C631	m5C	C7	5'-GGGGAUCCUGGCAGG-3'	((....))....... ( -0.40)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr2:8877151-8877165	MBOAT2	HGNC:25193	ENSG00000143797	GGGGAUCCUGGCAGG
hsa_m5C_1340	chr17	9491861	9491862	-	ENST00000306357	C520	m5C	C5	5'-GGGGCAGGAAAUUGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr17:9491852-9491866	STX8	HGNC:11443	ENSG00000170310	GGGGCAGGAAAUUGG
hsa_m5C_1341	chr4	165075681	165075682	-	ENST00000306480	C4879	m5C	C12	5'-GGAGGCUAAGGCAGG-3'	....((....))... ( -1.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr4:165075679-165075693	TMEM192	HGNC:26775	ENSG00000170088	GGAGGCUAAGGCAGG
hsa_m5C_1342	chr11	124895790	124895791	-	ENST00000306534	C871	m5C	C16	5'-GGCGGUGUGGCUCAGCUGG-3'	..((((........)))). ( -2.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr11:124895788-124895806	ROBO4	HGNC:17985	ENSG00000154133	GGCGGUGUGGCUCAGCUGG
hsa_m5C_1343	chr1	248838490	248838491	+	ENST00000306562	C268	m5C	C7	5'-GGGAGGCGGGGGUCGGCAGCCGG-3'	.((..((........))..)).. ( -5.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	23	chr1:248838485-248838507	ZNF672	HGNC:26179	ENSG00000171161	GGGAGGCGGGGGUCGGCAGCCGG
hsa_m5C_1344	chr5	43556804	43556805	-	ENST00000306846	C273	m5C	C4	5'-GGGCCGGAGCCGGGGCCUGGGCCGCGGAGGGG-3'	...((....(((.(((....))).)))..)). (-13.30)	loop	mRNA	293T;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	32	chr5:43556777-43556808	PAIP1	HGNC:16945	ENSG00000172239	GGGCCGGAGCCGGGGCCUGGGCCGCGGAGGGG
hsa_m5C_1345	chr5	43556803	43556804	-	ENST00000306846	C274	m5C	C5	5'-GGGCCGGAGCCGGGGCCUGGGCCGCGGAGGGG-3'	...((....(((.(((....))).)))..)). (-13.30)	loop	mRNA	293T;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	32	chr5:43556777-43556808	PAIP1	HGNC:16945	ENSG00000172239	GGGCCGGAGCCGGGGCCUGGGCCGCGGAGGGG
hsa_m5C_1346	chr16	69328197	69328198	-	ENST00000306875	C2859	m5C	C8	5'-GGGAGGGCGGGGCGGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	16	chr16:69328190-69328205	COG8	HGNC:18623	ENSG00000213380	GGGAGGGCGGGGCGGG
hsa_m5C_1347	chr19	58417745	58417746	+	ENST00000306910	C1727	m5C	C6	5'-GGCGUCAGGAGGACAGGGCACAUGG-3'	.(((((.....)))...))...... ( -1.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr19:58417741-58417765	ZNF584	HGNC:27318	ENSG00000171574	GGCGUCAGGAGGACAGGGCACAUGG
hsa_m5C_1348	chr4	143185179	143185180	+	ENST00000307017	C264	m5C	C6	5'-GAGGGCCCGGGGCGGCGGCGGAGUACGG-3'	....(((......)))..((.....)). ( -4.60)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	28	chr4:143185175-143185202	USP38	HGNC:20067	ENSG00000170185	GAGGGCCCGGGGCGGCGGCGGAGUACGG
hsa_m5C_1349	chr4	143185180	143185181	+	ENST00000307017	C265	m5C	C7	5'-GAGGGCCCGGGGCGGCGGCGGAGUACGG-3'	....(((......)))..((.....)). ( -4.60)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	28	chr4:143185175-143185202	USP38	HGNC:20067	ENSG00000170185	GAGGGCCCGGGGCGGCGGCGGAGUACGG
hsa_m5C_1350	chr4	143185181	143185182	+	ENST00000307017	C266	m5C	C8	5'-GAGGGCCCGGGGCGGCGGCGGAGUACGG-3'	....(((......)))..((.....)). ( -4.60)	loop	mRNA	Testis;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	28	chr4:143185175-143185202	USP38	HGNC:20067	ENSG00000170185	GAGGGCCCGGGGCGGCGGCGGAGUACGG
hsa_m5C_1351	chr4	143185186	143185187	+	ENST00000307017	C271	m5C	C13	5'-GAGGGCCCGGGGCGGCGGCGGAGUACGG-3'	....(((......)))..((.....)). ( -4.60)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	28	chr4:143185175-143185202	USP38	HGNC:20067	ENSG00000170185	GAGGGCCCGGGGCGGCGGCGGAGUACGG
hsa_m5C_1352	chr4	143185137	143185138	+	ENST00000307017	C222	m5C	C7	5'-GGGGGGCCCGACAGGCCCCUCGG-3'	((((((((.....)))))))).. (-17.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr4:143185132-143185154	USP38	HGNC:20067	ENSG00000170185	GGGGGGCCCGACAGGCCCCUCGG
hsa_m5C_1353	chr4	143185146	143185147	+	ENST00000307017	C231	m5C	C16	5'-GGGGGGCCCGACAGGCCCCUCGG-3'	((((((((.....)))))))).. (-17.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr4:143185132-143185154	USP38	HGNC:20067	ENSG00000170185	GGGGGGCCCGACAGGCCCCUCGG
hsa_m5C_1354	chr4	143185147	143185148	+	ENST00000307017	C232	m5C	C17	5'-GGGGGGCCCGACAGGCCCCUCGG-3'	((((((((.....)))))))).. (-17.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr4:143185132-143185154	USP38	HGNC:20067	ENSG00000170185	GGGGGGCCCGACAGGCCCCUCGG
hsa_m5C_1355	chr4	143185148	143185149	+	ENST00000307017	C233	m5C	C18	5'-GGGGGGCCCGACAGGCCCCUCGG-3'	((((((((.....)))))))).. (-17.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	23	chr4:143185132-143185154	USP38	HGNC:20067	ENSG00000170185	GGGGGGCCCGACAGGCCCCUCGG
hsa_m5C_1356	chr4	143185149	143185150	+	ENST00000307017	C234	m5C	C19	5'-GGGGGGCCCGACAGGCCCCUCGG-3'	((((((((.....)))))))).. (-17.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	23	chr4:143185132-143185154	USP38	HGNC:20067	ENSG00000170185	GGGGGGCCCGACAGGCCCCUCGG
hsa_m5C_1357	chr15	31327302	31327303	+	ENST00000307145	C469	m5C	C16	5'-GGGCCGCGGGAGGGGCCGG-3'	.((((........)))).. ( -8.50)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	19	chr15:31327288-31327306	KLF13	HGNC:13672	ENSG00000169926	GGGCCGCGGGAGGGGCCGG
hsa_m5C_1358	chr15	31327303	31327304	+	ENST00000307145	C470	m5C	C17	5'-GGGCCGCGGGAGGGGCCGG-3'	.((((........)))).. ( -8.50)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	19	chr15:31327288-31327306	KLF13	HGNC:13672	ENSG00000169926	GGGCCGCGGGAGGGGCCGG
hsa_m5C_1359	chr4	8292339	8292340	+	ENST00000307358	C1138	m5C	C6	5'-GGGACCACUGGUGAACCUG^GAUGGCGAGG-3'	....(((((((.....)))).)))..... ( -4.10)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr4:8292335-8292353;8294087-8294096	HTRA3	HGNC:30406	ENSG00000170801	GGGACCACUGGUGAACCUGGAUGGCGAGG
hsa_m5C_1360	chr10	72274802	72274803	+	ENST00000307365	C511	m5C	C3	5'-GGCCCAGGCGCGGCUGG-3'	...((((......)))) ( -4.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr10:72274801-72274817	DDIT4	HGNC:24944	ENSG00000168209	GGCCCAGGCGCGGCUGG
hsa_m5C_1361	chr11	62791994	62791995	-	ENST00000307366	C12	m5C	C4	5'-GGCCAUGGCGGCGCCUUGGAGGCGAUGG-3'	.(((.....)))((((...))))..... ( -8.50)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	28	chr11:62791971-62791998	TMEM223	HGNC:28464	ENSG00000168569	GGCCAUGGCGGCGCCUUGGAGGCGAUGG
hsa_m5C_1362	chr8	43022970	43022971	+	ENST00000307602	C6784	m5C	C6	5'-GGAGGCCAAGGCAGG-3'	....((....))... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr8:43022966-43022980	HOOK3	HGNC:23576	ENSG00000168172	GGAGGCCAAGGCAGG
hsa_m5C_1363	chr8	43022971	43022972	+	ENST00000307602	C6785	m5C	C7	5'-GGAGGCCAAGGCAGG-3'	....((....))... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr8:43022966-43022980	HOOK3	HGNC:23576	ENSG00000168172	GGAGGCCAAGGCAGG
hsa_m5C_1364	chr8	43023104	43023105	+	ENST00000307602	C6918	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr8:43023100-43023114	HOOK3	HGNC:23576	ENSG00000168172	GGAGGCUGAGGCAGG
hsa_m5C_1365	chr8	43023110	43023111	+	ENST00000307602	C6924	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr8:43023100-43023114	HOOK3	HGNC:23576	ENSG00000168172	GGAGGCUGAGGCAGG
hsa_m5C_1366	chr10	21742744	21742745	+	ENST00000307729	C4258	m5C	C8	5'-GGGGCCACUGUGGAAAGUGCUGGUGGG-3'	....((((((((.....))).))))). ( -6.30)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	27	chr10:21742738-21742764	MLLT10	HGNC:16063	ENSG00000078403	GGGGCCACUGUGGAAAGUGCUGGUGGG
hsa_m5C_1367	chr17	76072458	76072459	-	ENST00000307877	C59	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	11	chr17:76072457-76072467	SRP68	HGNC:11302	ENSG00000167881	GGCGGCGGCGG
hsa_m5C_1368	chr15	66527296	66527297	+	ENST00000307897	C840	m5C	C3	5'-GGCUGAUGGUUUGAGGACUGG-3'	.......((((....)))).. ( -0.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr15:66527295-66527315	ZWILCH	HGNC:25468	ENSG00000174442	GGCUGAUGGUUUGAGGACUGG
hsa_m5C_1369	chr15	66504833	66504834	-	ENST00000307961	C22	m5C	C3	5'-GGCAGCAGCCGGGCUGAGAGGAGCGUGG-3'	........(((.(((......))).))) ( -7.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr15:66504809-66504836	RPL4	HGNC:10353	ENSG00000174444	GGCAGCAGCCGGGCUGAGAGGAGCGUGG
hsa_m5C_1370	chr15	66504822	66504823	-	ENST00000307961	C33	m5C	C14	5'-GGCAGCAGCCGGGCUGAGAGGAGCGUGG-3'	........(((.(((......))).))) ( -7.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr15:66504809-66504836	RPL4	HGNC:10353	ENSG00000174444	GGCAGCAGCCGGGCUGAGAGGAGCGUGG
hsa_m5C_1371	chr15	66499584	66499585	-	ENST00000307961	C1171	m5C	C3	5'-GGCGGCGGUUGCAGG-3'	.(((.....)))... ( -1.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	15	chr15:66499573-66499587	RPL4	HGNC:10353	ENSG00000174444	GGCGGCGGUUGCAGG
hsa_m5C_1372	chr6	41599059	41599060	+	ENST00000307972	C2670	m5C	C8	5'-GGGGAGGCCCGG-3'	(((....))).. ( -4.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	12	chr6:41599053-41599064	FOXP4	HGNC:20842	ENSG00000137166	GGGGAGGCCCGG
hsa_m5C_1373	chr6	41599060	41599061	+	ENST00000307972	C2671	m5C	C9	5'-GGGGAGGCCCGG-3'	(((....))).. ( -4.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	12	chr6:41599053-41599064	FOXP4	HGNC:20842	ENSG00000137166	GGGGAGGCCCGG
hsa_m5C_1374	chr12	48852129	48852130	-	ENST00000308025	C34	m5C	C21	5'-GGAAACGGGAAAGAUGGCGACGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr12:48852128-48852150	DDX23	HGNC:17347	ENSG00000174243	GGAAACGGGAAAGAUGGCGACGG
hsa_m5C_1375	chr12	48838028	48838029	-	ENST00000308025	C612	m5C	C3	5'-GGCAGCAGGAGGUGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	15	chr12:48838017-48838031	DDX23	HGNC:17347	ENSG00000174243	GGCAGCAGGAGGUGG
hsa_m5C_1376	chr12	48838025	48838026	-	ENST00000308025	C615	m5C	C6	5'-GGCAGCAGGAGGUGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	15	chr12:48838017-48838031	DDX23	HGNC:17347	ENSG00000174243	GGCAGCAGGAGGUGG
hsa_m5C_1377	chr12	48837609	48837610	-	ENST00000308025	C747	m5C	C33	5'-GGGAACGUCGGGAACGCAGGGAGAGGAUGGAACGGG-3'	.....((((................))))....... ( -2.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	36	chr12:48837607-48837642	DDX23	HGNC:17347	ENSG00000174243	GGGAACGUCGGGAACGCAGGGAGAGGAUGGAACGGG
hsa_m5C_1378	chrX	130067186	130067187	-	ENST00000308167	C1908	m5C	C18	5'-GGUCACAGGGGCUGGACCAGCAGG-3'	((((.(((...)))))))...... ( -7.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chrX:130067181-130067204	ELF4	HGNC:3319	ENSG00000102034	GGUCACAGGGGCUGGACCAGCAGG
hsa_m5C_1379	chr12	56267136	56267137	+	ENST00000308197	C196	m5C	C12	5'-GGGCGGGCUCGCGGCGGGUCCCAGCUGGG-3'	.((((((((((...)))).))).)))... (-11.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	29	chr12:56267126-56267154	COQ10A	HGNC:26515	ENSG00000135469	GGGCGGGCUCGCGGCGGGUCCCAGCUGGG
hsa_m5C_1380	chr17	58980296	58980297	+	ENST00000308249	C1678	m5C	C3	5'-GGCAAGAAGAUGGUGGGGAUGAUAAGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	27	chr17:58980295-58980321	PPM1E	HGNC:19322	ENSG00000175175	GGCAAGAAGAUGGUGGGGAUGAUAAGG
hsa_m5C_1381	chr17	42851583	42851584	+	ENST00000308423	C386	m5C	C9	5'-GGCUGGGGCCAGGGCUGGUGG-3'	(((....)))........... ( -3.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	21	chr17:42851576-42851596	AOC3	HGNC:550	ENSG00000131471	GGCUGGGGCCAGGGCUGGUGG
hsa_m5C_1382	chr17	42851589	42851590	+	ENST00000308423	C392	m5C	C15	5'-GGCUGGGGCCAGGGCUGGUGG-3'	(((....)))........... ( -3.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	21	chr17:42851576-42851596	AOC3	HGNC:550	ENSG00000131471	GGCUGGGGCCAGGGCUGGUGG
hsa_m5C_1383	chr15	75675412	75675413	-	ENST00000308508	C7199	m5C	C14	5'-GGGGUGGAGGGUCCUGGGAGAUAGUCCCAGGG-3'	............(((((((.....))))))). (-13.40)	loop	mRNA	lung,HeLa;HeLa	RNA-BisSeq:(High),m5C-RIP-seq:(Medium);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;31061524	32	chr15:75675395-75675426	CSPG4	HGNC:2466	ENSG00000173546	GGGGUGGAGGGUCCUGGGAGAUAGUCCCAGGG
hsa_m5C_1384	chr15	75675540	75675541	-	ENST00000308508	C7071	m5C	C17	5'-GGGUGUGAGGCCUGGCCUGGGCCCAGAUGCUGAUCGGGCCAGGG-3'	((((.....))))..(((((.(((.(((....))))))))))). (-19.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	44	chr15:75675514-75675557	CSPG4	HGNC:2466	ENSG00000173546	GGGUGUGAGGCCUGGCCUGGGCCCAGAUGCUGAUCGGGCCAGGG
hsa_m5C_1385	chr15	51910474	51910475	+	ENST00000308580	C2982	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF;Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	15	chr15:51910470-51910484	TMOD3	HGNC:11873	ENSG00000138594	GGAGGCUGAGGCAGG
hsa_m5C_1386	chr15	51910480	51910481	+	ENST00000308580	C2988	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr15:51910470-51910484	TMOD3	HGNC:11873	ENSG00000138594	GGAGGCUGAGGCAGG
hsa_m5C_1387	chr15	51912325	51912326	+	ENST00000308580	C4833	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr15:51912321-51912335	TMOD3	HGNC:11873	ENSG00000138594	GGAGGCUGAGGCAGG
hsa_m5C_1388	chr15	51912331	51912332	+	ENST00000308580	C4839	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr15:51912321-51912335	TMOD3	HGNC:11873	ENSG00000138594	GGAGGCUGAGGCAGG
hsa_m5C_1389	chr15	51912191	51912192	+	ENST00000308580	C4699	m5C	C7	5'-GGGAGGCCGAGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr15:51912186-51912200	TMOD3	HGNC:11873	ENSG00000138594	GGGAGGCCGAGGUGG
hsa_m5C_1390	chr15	51912192	51912193	+	ENST00000308580	C4700	m5C	C8	5'-GGGAGGCCGAGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr15:51912186-51912200	TMOD3	HGNC:11873	ENSG00000138594	GGGAGGCCGAGGUGG
hsa_m5C_1391	chr11	67284962	67284963	+	ENST00000308595	C1998	m5C	C3	5'-GGCGGGGCGAGGGCGAGG-3'	......((....)).... ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database;RMVar database	28418038;22344696	18	chr11:67284961-67284978	GRK2	HGNC:289	ENSG00000173020	GGCGGGGCGAGGGCGAGG
hsa_m5C_1392	chr11	67284967	67284968	+	ENST00000308595	C2003	m5C	C8	5'-GGCGGGGCGAGGGCGAGG-3'	......((....)).... ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database;RMVar database	28418038;22344696	18	chr11:67284961-67284978	GRK2	HGNC:289	ENSG00000173020	GGCGGGGCGAGGGCGAGG
hsa_m5C_1393	chr5	16463683	16463684	-	ENST00000308683	C819	m5C	C4	5'-GGACGAUGUGGUGGAGCAGG-3'	......(((......))).. ( -0.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr5:16463668-16463687	ZNF622	HGNC:30958	ENSG00000173545	GGACGAUGUGGUGGAGCAGG
hsa_m5C_1394	chr5	16463670	16463671	-	ENST00000308683	C832	m5C	C17	5'-GGACGAUGUGGUGGAGCAGG-3'	......(((......))).. ( -0.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr5:16463668-16463687	ZNF622	HGNC:30958	ENSG00000173545	GGACGAUGUGGUGGAGCAGG
hsa_m5C_1395	chr5	16465524	16465525	-	ENST00000308683	C276	m5C	C6	5'-GGCUUCCAGGAGCGAGUGCGGGCGCAGCGG-3'	.((((....))))...(((....))).... ( -4.70)	loop	mRNA	Testis;HeLa	UBS-seq:(High);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	31061524;38168991	30	chr5:16465501-16465530	ZNF622	HGNC:30958	ENSG00000173545	GGCUUCCAGGAGCGAGUGCGGGCGCAGCGG
hsa_m5C_1396	chr14	23563850	23563851	-	ENST00000308724	C1853	m5C	C7	5'-G^GAGAGCCCUGGAACUAAGCCUGGCUCUGG-3'	..((((((..((.......)).)))))).. (-11.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr14:23563828-23563856;23564046-23564046	AP1G2	HGNC:556	ENSG00000213983	GGAGAGCCCUGGAACUAAGCCUGGCUCUGG
hsa_m5C_1397	chr16	29901665	29901666	+	ENST00000308748	C1179	m5C	C31	5'-GGGACUUCGGGGCUGUGAGCUGGGACUUCUCAGGG-3'	((((..((..((((...))))..))..)))).... ( -7.60)	loop	mRNA	HeLa,siControl;frontal_cortex,HeLa,T24;HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;38168991;m6A-Atlas database;RMVar database	28418038;31061524;38168991	35	chr16:29901636-29901670	ASPHD1	HGNC:27380	ENSG00000174939	GGGACUUCGGGGCUGUGAGCUGGGACUUCUCAGGG
hsa_m5C_1398	chr16	29901775	29901776	+	ENST00000308748	C1289	m5C	C6	5'-GGUGCCCGGGGGCCUAUCGGGCACUGAGG-3'	(((((((((.......))))))))).... (-15.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr16:29901771-29901799	ASPHD1	HGNC:27380	ENSG00000174939	GGUGCCCGGGGGCCUAUCGGGCACUGAGG
hsa_m5C_1399	chr16	29901782	29901783	+	ENST00000308748	C1296	m5C	C13	5'-GGUGCCCGGGGGCCUAUCGGGCACUGAGG-3'	(((((((((.......))))))))).... (-15.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr16:29901771-29901799	ASPHD1	HGNC:27380	ENSG00000174939	GGUGCCCGGGGGCCUAUCGGGCACUGAGG
hsa_m5C_1400	chr11	67071618	67071619	+	ENST00000308831	C706	m5C	C9	5'-GGGCGUCCCAGCGACGCGGGAAGGGGCAGGG-3'	..(((((.....))))).............. ( -7.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	31	chr11:67071611-67071641	RHOD	HGNC:670	ENSG00000173156	GGGCGUCCCAGCGACGCGGGAAGGGGCAGGG
hsa_m5C_1401	chr2	23940580	23940581	+	ENST00000309033	C119	m5C	C5	5'-GGAGCCCGCGGCCAAACGGUGCCUGCGG-3'	.....(((((((........))).)))) (-10.00)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	28	chr2:23940577-23940604	UBXN2A	HGNC:27265	ENSG00000173960	GGAGCCCGCGGCCAAACGGUGCCUGCGG
hsa_m5C_1402	chr2	23940581	23940582	+	ENST00000309033	C120	m5C	C6	5'-GGAGCCCGCGGCCAAACGGUGCCUGCGG-3'	.....(((((((........))).)))) (-10.00)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	28	chr2:23940577-23940604	UBXN2A	HGNC:27265	ENSG00000173960	GGAGCCCGCGGCCAAACGGUGCCUGCGG
hsa_m5C_1403	chr2	23940582	23940583	+	ENST00000309033	C121	m5C	C7	5'-GGAGCCCGCGGCCAAACGGUGCCUGCGG-3'	.....(((((((........))).)))) (-10.00)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	28	chr2:23940577-23940604	UBXN2A	HGNC:27265	ENSG00000173960	GGAGCCCGCGGCCAAACGGUGCCUGCGG
hsa_m5C_1404	chr12	6766372	6766373	+	ENST00000309083	C11	m5C	C8	5'-GGCUGGUCGGCGG-3'	.(((....))).. ( -1.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	13	chr12:6766366-6766378	PTMS	HGNC:9629	ENSG00000159335	GGCUGGUCGGCGG
hsa_m5C_1405	chr12	6766375	6766376	+	ENST00000309083	C14	m5C	C11	5'-GGCUGGUCGGCGG-3'	.(((....))).. ( -1.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	13	chr12:6766366-6766378	PTMS	HGNC:9629	ENSG00000159335	GGCUGGUCGGCGG
hsa_m5C_1406	chr5	149833641	149833642	+	ENST00000309241	C1602	m5C	C11	5'-GGGAGCUGGGCAGCCCCACGGACGAGG-3'	(((.(((....)))))).......... ( -8.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr5:149833632-149833658	PPARGC1B	HGNC:30022	ENSG00000155846	GGGAGCUGGGCAGCCCCACGGACGAGG
hsa_m5C_1407	chr11	65592311	65592312	+	ENST00000309295	C4832	m5C	C10	5'-GGCCGCCGGCCCGGGUGG-3'	..(((((......))))) ( -7.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr11:65592303-65592320	EHBP1L1	HGNC:30682	ENSG00000173442	GGCCGCCGGCCCGGGUGG
hsa_m5C_1408	chr11	65592312	65592313	+	ENST00000309295	C4833	m5C	C11	5'-GGCCGCCGGCCCGGGUGG-3'	..(((((......))))) ( -7.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr11:65592303-65592320	EHBP1L1	HGNC:30682	ENSG00000173442	GGCCGCCGGCCCGGGUGG
hsa_m5C_1409	chr11	65584963	65584964	+	ENST00000309295	C3556	m5C	C7	5'-G^GCCUUCGAUGGCUUCGCGGCUCUGG-3'	((((..(((.....))).)))).... ( -6.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr11:65584534-65584534;65584959-65584983	EHBP1L1	HGNC:30682	ENSG00000173442	GGCCUUCGAUGGCUUCGCGGCUCUGG
hsa_m5C_1410	chr11	65585385	65585386	+	ENST00000309295	C3978	m5C	C18	5'-GGGGCUGGUGAACGGGGCGGGGGCACCGGG-3'	....((((((..((...))....)))))). ( -8.10)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	30	chr11:65585369-65585398	EHBP1L1	HGNC:30682	ENSG00000173442	GGGGCUGGUGAACGGGGCGGGGGCACCGGG
hsa_m5C_1411	chr11	65585391	65585392	+	ENST00000309295	C3984	m5C	C24	5'-GGGGCUGGUGAACGGGGCGGGGGCACCGGG-3'	....((((((..((...))....)))))). ( -8.10)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	28418038	30	chr11:65585369-65585398	EHBP1L1	HGNC:30682	ENSG00000173442	GGGGCUGGUGAACGGGGCGGGGGCACCGGG
hsa_m5C_1412	chr11	65585393	65585394	+	ENST00000309295	C3986	m5C	C26	5'-GGGGCUGGUGAACGGGGCGGGGGCACCGGG-3'	....((((((..((...))....)))))). ( -8.10)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	28418038	30	chr11:65585369-65585398	EHBP1L1	HGNC:30682	ENSG00000173442	GGGGCUGGUGAACGGGGCGGGGGCACCGGG
hsa_m5C_1413	chr11	65585394	65585395	+	ENST00000309295	C3987	m5C	C27	5'-GGGGCUGGUGAACGGGGCGGGGGCACCGGG-3'	....((((((..((...))....)))))). ( -8.10)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	28418038	30	chr11:65585369-65585398	EHBP1L1	HGNC:30682	ENSG00000173442	GGGGCUGGUGAACGGGGCGGGGGCACCGGG
hsa_m5C_1414	chr19	3980008	3980009	-	ENST00000309311	C1487	m5C	C5	5'-GGAACAUUGUGGGCCUCGUGGGCGUGG-3'	............((((...)))).... ( -4.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	27	chr19:3979987-3980013	EEF2	HGNC:3214	ENSG00000167658	GGAACAUUGUGGGCCUCGUGGGCGUGG
hsa_m5C_1415	chr19	3979998	3979999	-	ENST00000309311	C1497	m5C	C15	5'-GGAACAUUGUGGGCCUCGUGGGCGUGG-3'	............((((...)))).... ( -4.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	27	chr19:3979987-3980013	EEF2	HGNC:3214	ENSG00000167658	GGAACAUUGUGGGCCUCGUGGGCGUGG
hsa_m5C_1416	chr19	3979996	3979997	-	ENST00000309311	C1499	m5C	C17	5'-GGAACAUUGUGGGCCUCGUGGGCGUGG-3'	............((((...)))).... ( -4.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	27	chr19:3979987-3980013	EEF2	HGNC:3214	ENSG00000167658	GGAACAUUGUGGGCCUCGUGGGCGUGG
hsa_m5C_1417	chr19	3979990	3979991	-	ENST00000309311	C1505	m5C	C23	5'-GGAACAUUGUGGGCCUCGUGGGCGUGG-3'	............((((...)))).... ( -4.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	27	chr19:3979987-3980013	EEF2	HGNC:3214	ENSG00000167658	GGAACAUUGUGGGCCUCGUGGGCGUGG
hsa_m5C_1418	chr19	3981362	3981363	-	ENST00000309311	C1070	m5C	C19	5'-GGACAGCGAGGACAAGGACAAAGAAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	27	chr19:3981355-3981381	EEF2	HGNC:3214	ENSG00000167658	GGACAGCGAGGACAAGGACAAAGAAGG
hsa_m5C_1419	chr19	3977854	3977855	-	ENST00000309311	C2114	m5C	C4	5'-GGACAGUGUGGUGGCCGG-3'	((.((......)).)).. ( -2.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	18	chr19:3977841-3977858	EEF2	HGNC:3214	ENSG00000167658	GGACAGUGUGGUGGCCGG
hsa_m5C_1420	chr19	3977843	3977844	-	ENST00000309311	C2125	m5C	C15	5'-GGACAGUGUGGUGGCCGG-3'	((.((......)).)).. ( -2.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr19:3977841-3977858	EEF2	HGNC:3214	ENSG00000167658	GGACAGUGUGGUGGCCGG
hsa_m5C_1421	chr19	3977842	3977843	-	ENST00000309311	C2126	m5C	C16	5'-GGACAGUGUGGUGGCCGG-3'	((.((......)).)).. ( -2.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr19:3977841-3977858	EEF2	HGNC:3214	ENSG00000167658	GGACAGUGUGGUGGCCGG
hsa_m5C_1422	chr19	3979360	3979361	-	ENST00000309311	C1764	m5C	C5	5'-GGACCUGGAGGAGG-3'	...(((.....))) ( -1.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	14	chr19:3979352-3979365	EEF2	HGNC:3214	ENSG00000167658	GGACCUGGAGGAGG
hsa_m5C_1423	chr19	3982300	3982301	-	ENST00000309311	C819	m5C	C19	5'-GGGGAGGGCCAGUUGGGGCCUGCCGAGCGGG-3'	.((.(((.((.....)).))).))....... (-13.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	31	chr19:3982289-3982319	EEF2	HGNC:3214	ENSG00000167658	GGGGAGGGCCAGUUGGGGCCUGCCGAGCGGG
hsa_m5C_1424	chr19	3982299	3982300	-	ENST00000309311	C820	m5C	C20	5'-GGGGAGGGCCAGUUGGGGCCUGCCGAGCGGG-3'	.((.(((.((.....)).))).))....... (-13.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	31	chr19:3982289-3982319	EEF2	HGNC:3214	ENSG00000167658	GGGGAGGGCCAGUUGGGGCCUGCCGAGCGGG
hsa_m5C_1425	chr19	3982296	3982297	-	ENST00000309311	C823	m5C	C23	5'-GGGGAGGGCCAGUUGGGGCCUGCCGAGCGGG-3'	.((.(((.((.....)).))).))....... (-13.00)	bulge	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	31	chr19:3982289-3982319	EEF2	HGNC:3214	ENSG00000167658	GGGGAGGGCCAGUUGGGGCCUGCCGAGCGGG
hsa_m5C_1426	chr19	3982295	3982296	-	ENST00000309311	C824	m5C	C24	5'-GGGGAGGGCCAGUUGGGGCCUGCCGAGCGGG-3'	.((.(((.((.....)).))).))....... (-13.00)	bulge	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	31	chr19:3982289-3982319	EEF2	HGNC:3214	ENSG00000167658	GGGGAGGGCCAGUUGGGGCCUGCCGAGCGGG
hsa_m5C_1427	chr19	3976623	3976624	-	ENST00000309311	C2590	m5C	C9	5'-GGUGGUGGCGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	30526041	11	chr19:3976622-3976632	EEF2	HGNC:3214	ENSG00000167658	GGUGGUGGCGG
hsa_m5C_1428	chr19	3976195	3976196	-	ENST00000309311	C3018	m5C	C22	5'-GGUUUAUUUGGGUACAUGGCCCGCAGUGG-3'	....(((((((((.....))))).)))). ( -6.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr19:3976189-3976217	EEF2	HGNC:3214	ENSG00000167658	GGUUUAUUUGGGUACAUGGCCCGCAGUGG
hsa_m5C_1429	chr7	44757898	44757899	+	ENST00000309315	C811	m5C	C10	5'-GGAGGUCCCCGGGG-3'	((......)).... ( -1.10)	loop	mRNA	293T;HeLa	UBS-seq:(High);RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	30872485;38168991	14	chr7:44757890-44757903	ZMIZ2	HGNC:22229	ENSG00000122515	GGAGGUCCCCGGGG
hsa_m5C_1430	chr11	64246840	64246841	-	ENST00000309318	C103	m5C	C19	5'-GGGCGCGGCCAGGCCAAGCCCGGGG-3'	((((..(((...)))..)))).... (-12.40)	bulge	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr11:64246835-64246859	PPP1R14B	HGNC:9057	ENSG00000173457	GGGCGCGGCCAGGCCAAGCCCGGGG
hsa_m5C_1431	chr11	64246839	64246840	-	ENST00000309318	C104	m5C	C20	5'-GGGCGCGGCCAGGCCAAGCCCGGGG-3'	((((..(((...)))..)))).... (-12.40)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	25	chr11:64246835-64246859	PPP1R14B	HGNC:9057	ENSG00000173457	GGGCGCGGCCAGGCCAAGCCCGGGG
hsa_m5C_1432	chr11	64246838	64246839	-	ENST00000309318	C105	m5C	C21	5'-GGGCGCGGCCAGGCCAAGCCCGGGG-3'	((((..(((...)))..)))).... (-12.40)	bulge	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr11:64246835-64246859	PPP1R14B	HGNC:9057	ENSG00000173457	GGGCGCGGCCAGGCCAAGCCCGGGG
hsa_m5C_1433	chr11	64246566	64246567	-	ENST00000309318	C377	m5C	C5	5'-GGGGCCGCAGGAGAGGGCCCGGGCGGGG-3'	.(((((.........)))))........ (-10.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr11:64246544-64246571	PPP1R14B	HGNC:9057	ENSG00000173457	GGGGCCGCAGGAGAGGGCCCGGGCGGGG
hsa_m5C_1434	chr11	64246553	64246554	-	ENST00000309318	C390	m5C	C18	5'-GGGGCCGCAGGAGAGGGCCCGGGCGGGG-3'	.(((((.........)))))........ (-10.90)	bulge	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	28	chr11:64246544-64246571	PPP1R14B	HGNC:9057	ENSG00000173457	GGGGCCGCAGGAGAGGGCCCGGGCGGGG
hsa_m5C_1435	chr11	64246552	64246553	-	ENST00000309318	C391	m5C	C19	5'-GGGGCCGCAGGAGAGGGCCCGGGCGGGG-3'	.(((((.........)))))........ (-10.90)	bulge	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	28	chr11:64246544-64246571	PPP1R14B	HGNC:9057	ENSG00000173457	GGGGCCGCAGGAGAGGGCCCGGGCGGGG
hsa_m5C_1436	chr11	64246551	64246552	-	ENST00000309318	C392	m5C	C20	5'-GGGGCCGCAGGAGAGGGCCCGGGCGGGG-3'	.(((((.........)))))........ (-10.90)	bulge	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	28	chr11:64246544-64246571	PPP1R14B	HGNC:9057	ENSG00000173457	GGGGCCGCAGGAGAGGGCCCGGGCGGGG
hsa_m5C_1437	chr2	109502199	109502200	+	ENST00000309415	C3514	m5C	C25	5'-GGUGUUUGUGAGGCCCUGGGGGUGCCCCGG-3'	(((.((...)).)))((((((...)))))) (-11.00)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	30	chr2:109502176-109502205	SH3RF3	HGNC:24699	ENSG00000172985	GGUGUUUGUGAGGCCCUGGGGGUGCCCCGG
hsa_m5C_1438	chr2	109502200	109502201	+	ENST00000309415	C3515	m5C	C26	5'-GGUGUUUGUGAGGCCCUGGGGGUGCCCCGG-3'	(((.((...)).)))((((((...)))))) (-11.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	30	chr2:109502176-109502205	SH3RF3	HGNC:24699	ENSG00000172985	GGUGUUUGUGAGGCCCUGGGGGUGCCCCGG
hsa_m5C_1439	chr2	109502201	109502202	+	ENST00000309415	C3516	m5C	C27	5'-GGUGUUUGUGAGGCCCUGGGGGUGCCCCGG-3'	(((.((...)).)))((((((...)))))) (-11.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	30	chr2:109502176-109502205	SH3RF3	HGNC:24699	ENSG00000172985	GGUGUUUGUGAGGCCCUGGGGGUGCCCCGG
hsa_m5C_1440	chr2	109502202	109502203	+	ENST00000309415	C3517	m5C	C28	5'-GGUGUUUGUGAGGCCCUGGGGGUGCCCCGG-3'	(((.((...)).)))((((((...)))))) (-11.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	30	chr2:109502176-109502205	SH3RF3	HGNC:24699	ENSG00000172985	GGUGUUUGUGAGGCCCUGGGGGUGCCCCGG
hsa_m5C_1441	chr11	64234807	64234808	+	ENST00000309422	C225	m5C	C23	5'-GGGCUAGGGCGAUGCGGGCGCCCCCGGCGGG-3'	..(((.(((((.......)))))..)))... (-11.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	31	chr11:64234786-64234816	VEGFB	HGNC:12681	ENSG00000173511	GGGCUAGGGCGAUGCGGGCGCCCCCGGCGGG
hsa_m5C_1442	chr19	10553264	10553265	+	ENST00000309469	C1810	m5C	C6	5'-GGGGCCCUCCUGGCAGGGUAGGG-3'	....(((((((....))).)))) ( -8.20)	bulge	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	23	chr19:10553260-10553282	ATG4D	HGNC:20789	ENSG00000130734	GGGGCCCUCCUGGCAGGGUAGGG
hsa_m5C_1443	chr19	10553265	10553266	+	ENST00000309469	C1811	m5C	C7	5'-GGGGCCCUCCUGGCAGGGUAGGG-3'	....(((((((....))).)))) ( -8.20)	bulge	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	23	chr19:10553260-10553282	ATG4D	HGNC:20789	ENSG00000130734	GGGGCCCUCCUGGCAGGGUAGGG
hsa_m5C_1444	chr19	10553267	10553268	+	ENST00000309469	C1813	m5C	C9	5'-GGGGCCCUCCUGGCAGGGUAGGG-3'	....(((((((....))).)))) ( -8.20)	bulge	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	23	chr19:10553260-10553282	ATG4D	HGNC:20789	ENSG00000130734	GGGGCCCUCCUGGCAGGGUAGGG
hsa_m5C_1445	chr19	10553268	10553269	+	ENST00000309469	C1814	m5C	C10	5'-GGGGCCCUCCUGGCAGGGUAGGG-3'	....(((((((....))).)))) ( -8.20)	bulge	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	23	chr19:10553260-10553282	ATG4D	HGNC:20789	ENSG00000130734	GGGGCCCUCCUGGCAGGGUAGGG
hsa_m5C_1446	chr12	10160369	10160370	-	ENST00000309539	C712	m5C	C14	5'-GGCUCUGGGAGGACGG-3'	....(((......))) ( -0.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr12:10160368-10160383	OLR1	HGNC:8133	ENSG00000173391	GGCUCUGGGAGGACGG
hsa_m5C_1447	chr3	33174910	33174911	-	ENST00000309558	C586	m5C	C10	5'-GGAGUGGUACGGCCUGG-3'	.....(((...)))... ( -1.10)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr3:33174904-33174920	SUSD5	HGNC:29061	ENSG00000173705	GGAGUGGUACGGCCUGG
hsa_m5C_1448	chr11	66857167	66857168	+	ENST00000309602	C105	m5C	C4	5'-GGGCCCGAGGGUGGGCGGCGGG-3'	..(((((....)))))...... ( -7.70)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	22	chr11:66857165-66857186	LRFN4	HGNC:28456	ENSG00000173621	GGGCCCGAGGGUGGGCGGCGGG
hsa_m5C_1449	chr11	66857168	66857169	+	ENST00000309602	C106	m5C	C5	5'-GGGCCCGAGGGUGGGCGGCGGG-3'	..(((((....)))))...... ( -7.70)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	22	chr11:66857165-66857186	LRFN4	HGNC:28456	ENSG00000173621	GGGCCCGAGGGUGGGCGGCGGG
hsa_m5C_1450	chr11	66857169	66857170	+	ENST00000309602	C107	m5C	C6	5'-GGGCCCGAGGGUGGGCGGCGGG-3'	..(((((....)))))...... ( -7.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	22	chr11:66857165-66857186	LRFN4	HGNC:28456	ENSG00000173621	GGGCCCGAGGGUGGGCGGCGGG
hsa_m5C_1451	chr11	66843535	66843536	+	ENST00000309657	C96	m5C	C4	5'-GGGCGGCCUGGGCCCCGGGCUGUGCUGCUGGG-3'	..(((((((((...)))))))))......... (-14.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	32	chr11:66843533-66843564	RCE1	HGNC:13721	ENSG00000173653	GGGCGGCCUGGGCCCCGGGCUGUGCUGCUGGG
hsa_m5C_1452	chr16	23470082	23470083	-	ENST00000309859	C1616	m5C	C15	5'-GGAGCCCCUGGGCACCCAGAGGUACAGG-3'	...(((.((((....)))).)))..... ( -9.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr16:23470070-23470097	GGA2	HGNC:16064	ENSG00000103365	GGAGCCCCUGGGCACCCAGAGGUACAGG
hsa_m5C_1453	chr16	23491783	23491784	-	ENST00000309859	C451	m5C	C12	5'-GGGGUCCUGGGCCACAGG-3'	.....((((.....)))) ( -4.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	18	chr16:23491778-23491795	GGA2	HGNC:16064	ENSG00000103365	GGGGUCCUGGGCCACAGG
hsa_m5C_1454	chr17	39665994	39665995	+	ENST00000309889	C401	m5C	C7	5'-GGACCGCCAGGAGGUGG-3'	...(((((....))))) ( -6.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	17	chr17:39665989-39666005	TCAP	HGNC:11610	ENSG00000173991	GGACCGCCAGGAGGUGG
hsa_m5C_1455	chr3	123273706	123273707	+	ENST00000309934	C3805	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	frontal_cortex	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr3:123273702-123273716	SEC22A	HGNC:20260	ENSG00000121542	GGAGGCUGAGGCAGG
hsa_m5C_1456	chr6	18128805	18128806	-	ENST00000309983	C2689	m5C	C6	5'-GGAGGCGGAGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	11	chr6:18128801-18128811	TPMT	HGNC:12014	ENSG00000137364	GGAGGCGGAGG
hsa_m5C_1457	chr6	18128837	18128838	-	ENST00000309983	C2657	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr6:18128829-18128843	TPMT	HGNC:12014	ENSG00000137364	GGAGGCUGAGGCAGG
hsa_m5C_1458	chr6	18128831	18128832	-	ENST00000309983	C2663	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr6:18128829-18128843	TPMT	HGNC:12014	ENSG00000137364	GGAGGCUGAGGCAGG
hsa_m5C_1459	chr2	173964497	173964498	-	ENST00000310015	C265	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;RMVar database	28418038	11	chr2:173964490-173964500	SP3	HGNC:11208	ENSG00000172845	GGCGGCGGCGG
hsa_m5C_1460	chr2	173964494	173964495	-	ENST00000310015	C268	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr2:173964490-173964500	SP3	HGNC:11208	ENSG00000172845	GGCGGCGGCGG
hsa_m5C_1461	chr2	173964491	173964492	-	ENST00000310015	C271	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr2:173964490-173964500	SP3	HGNC:11208	ENSG00000172845	GGCGGCGGCGG
hsa_m5C_1462	chr2	173965207	173965208	-	ENST00000310015	C166	m5C	C3	5'-GGCGGCGGGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	10	chr2:173965201-173965210	SP3	HGNC:11208	ENSG00000172845	GGCGGCGGGG
hsa_m5C_1463	chr2	173965204	173965205	-	ENST00000310015	C169	m5C	C6	5'-GGCGGCGGGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	10	chr2:173965201-173965210	SP3	HGNC:11208	ENSG00000172845	GGCGGCGGGG
hsa_m5C_1464	chr3	149030767	149030768	-	ENST00000310053	C4679	m5C	C3	5'-GGCAGUAGCAGGUAAGGAAAGG-3'	.((....))............. ( -0.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr3:149030749-149030770	HLTF	HGNC:11099	ENSG00000071794	GGCAGUAGCAGGUAAGGAAAGG
hsa_m5C_1465	chr11	74493666	74493667	-	ENST00000310109	C58	m5C	C18	5'-GGUUGGUGCGCCUGGGUCGG-3'	(((......)))........ ( -1.70)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	20	chr11:74493665-74493684	LIPT2	HGNC:37216	ENSG00000175536	GGUUGGUGCGCCUGGGUCGG
hsa_m5C_1466	chr11	66616643	66616644	+	ENST00000310137	C15	m5C	C7	5'-GGAGGACUGCCGGUCGUUCGG-3'	(((.((((...)))).))).. ( -6.70)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	21	chr11:66616638-66616658	RBM14	HGNC:14219	ENSG00000239306	GGAGGACUGCCGGUCGUUCGG
hsa_m5C_1467	chr1	230979125	230979126	+	ENST00000310256	C33	m5C	C12	5'-GGCGGGCGGAGCGG-3'	.((.......)).. ( -1.30)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	14	chr1:230979115-230979128	ARV1	HGNC:29561	ENSG00000173409	GGCGGGCGGAGCGG
hsa_m5C_1468	chr7	38724883	38724884	-	ENST00000310301	C3944	m5C	C13	5'-GGGCCAGCCGGGCAUGGUGG-3'	..((((((...)).)))).. ( -4.50)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr7:38724877-38724896	VPS41	HGNC:12713	ENSG00000006715	GGGCCAGCCGGGCAUGGUGG
hsa_m5C_1469	chr19	55014832	55014833	-	ENST00000310373	C1140	m5C	C13	5'-GGAGCGUGGAAGCAGGAGG-3'	...((......))...... ( -1.80)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	19	chr19:55014827-55014845	GP6	HGNC:14388	ENSG00000088053	GGAGCGUGGAAGCAGGAGG
hsa_m5C_1470	chr3	195068906	195068907	-	ENST00000310380	C2091	m5C	C17	5'-GGAGAACUGUCGGGACCAGG-3'	......(((.......))). ( -0.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr3:195068904-195068923	XXYLT1	HGNC:26639	ENSG00000173950	GGAGAACUGUCGGGACCAGG
hsa_m5C_1471	chr5	176378108	176378109	+	ENST00000310389	C7026	m5C	C9	5'-GGAAGGACCAGGGG-3'	((.....))..... ( -0.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr5:176378101-176378114	ARL10	HGNC:22042	ENSG00000175414	GGAAGGACCAGGGG
hsa_m5C_1472	chrX	153954814	153954815	-	ENST00000310441	C4562	m5C	C4	5'-GGCCGAGCAUGGCACGGGAGCCCGG-3'	.(((......))).(((....))). ( -7.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chrX:153954794-153954818	HCFC1	HGNC:4839	ENSG00000172534	GGCCGAGCAUGGCACGGGAGCCCGG
hsa_m5C_1473	chrX	153954797	153954798	-	ENST00000310441	C4579	m5C	C21	5'-GGCCGAGCAUGGCACGGGAGCCCGG-3'	.(((......))).(((....))). ( -7.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chrX:153954794-153954818	HCFC1	HGNC:4839	ENSG00000172534	GGCCGAGCAUGGCACGGGAGCCCGG
hsa_m5C_1474	chrX	153954795	153954796	-	ENST00000310441	C4581	m5C	C23	5'-GGCCGAGCAUGGCACGGGAGCCCGG-3'	.(((......))).(((....))). ( -7.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chrX:153954794-153954818	HCFC1	HGNC:4839	ENSG00000172534	GGCCGAGCAUGGCACGGGAGCCCGG
hsa_m5C_1475	chr11	66539326	66539327	-	ENST00000310442	C1102	m5C	C8	5'-GGAGGGUCUGGCAGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr11:66539320-66539334	ZDHHC24	HGNC:27387	ENSG00000174165	GGAGGGUCUGGCAGG
hsa_m5C_1476	chr11	66539322	66539323	-	ENST00000310442	C1106	m5C	C12	5'-GGAGGGUCUGGCAGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr11:66539320-66539334	ZDHHC24	HGNC:27387	ENSG00000174165	GGAGGGUCUGGCAGG
hsa_m5C_1477	chr2	156496179	156496180	+	ENST00000310454	C611	m5C	C14	5'-GGAGGAGGAGCAACAGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	17	chr2:156496167-156496183	GPD2	HGNC:4456	ENSG00000115159	GGAGGAGGAGCAACAGG
hsa_m5C_1478	chr7	100430031	100430032	+	ENST00000310512	C202	m5C	C3	5'-GGCGGCGGAGAAGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	30872485	14	chr7:100430030-100430043	MEPCE	HGNC:20247	ENSG00000146834	GGCGGCGGAGAAGG
hsa_m5C_1479	chr7	100430034	100430035	+	ENST00000310512	C205	m5C	C6	5'-GGCGGCGGAGAAGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	14	chr7:100430030-100430043	MEPCE	HGNC:20247	ENSG00000146834	GGCGGCGGAGAAGG
hsa_m5C_1480	chr13	52652857	52652858	+	ENST00000310528	C23	m5C	C3	5'-GGCGGUGGUGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	11	chr13:52652856-52652866	SUGT1	HGNC:16987	ENSG00000165416	GGCGGUGGUGG
hsa_m5C_1481	chr11	65117118	65117119	-	ENST00000310597	C583	m5C	C20	5'-GGAGCCCGCGGCCGCCGAGCGGGUUCUUGG-3'	(((((((((.........)))))))))... (-15.50)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	30	chr11:65117109-65117138	ZNHIT2	HGNC:1177	ENSG00000174276	GGAGCCCGCGGCCGCCGAGCGGGUUCUUGG
hsa_m5C_1482	chr7	100359014	100359015	+	ENST00000310771	C2886	m5C	C4	5'-GGACACCCGGAGAUCAGGGAGG-3'	.....(((........)))... ( -4.50)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr7:100359012-100359033	STAG3L5P-PVRIG2P-PILRB	HGNC:48898	ENSG00000272752	GGACACCCGGAGAUCAGGGAGG
hsa_m5C_1483	chr11	128900622	128900623	-	ENST00000310799	C2566	m5C	C3	5'-GGCGGCCCUGGCUUCUGG-3'	((.(((....))).)).. ( -2.00)	loop	lncRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr11:128900608-128900625	KCNJ5-AS1	HGNC:28584	ENSG00000174370	GGCGGCCCUGGCUUCUGG
hsa_m5C_1484	chr14	31447235	31447236	-	ENST00000310850	C1513	m5C	C7	5'-GGGAGGCCGAGGUGGG-3'	((....))........ ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	16	chr14:31447227-31447242	DTD2	HGNC:20277	ENSG00000129480	GGGAGGCCGAGGUGGG
hsa_m5C_1485	chr14	31447234	31447235	-	ENST00000310850	C1514	m5C	C8	5'-GGGAGGCCGAGGUGGG-3'	((....))........ ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	16	chr14:31447227-31447242	DTD2	HGNC:20277	ENSG00000129480	GGGAGGCCGAGGUGGG
hsa_m5C_1486	chr17	80010589	80010590	-	ENST00000310924	C489	m5C	C15	5'-GGGGCCGGCGCACCCGG-3'	(((((....)).))).. ( -6.70)	loop	mRNA	293T;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;38168991	28418038;38168991	17	chr17:80010588-80010604	TBC1D16	HGNC:28356	ENSG00000167291	GGGGCCGGCGCACCCGG
hsa_m5C_1487	chr2	127701914	127701915	+	ENST00000310981	C419	m5C	C8	5'-GGGGCGGCGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	12	chr2:127701908-127701919	SFT2D3	HGNC:28767	ENSG00000173349	GGGGCGGCGCGG
hsa_m5C_1488	chr3	57627396	57627397	-	ENST00000311128	C2703	m5C	C6	5'-GGAGGCCAAGGUGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	14	chr3:57627389-57627402	DENND6A	HGNC:26635	ENSG00000174839	GGAGGCCAAGGUGG
hsa_m5C_1489	chr3	57627395	57627396	-	ENST00000311128	C2704	m5C	C7	5'-GGAGGCCAAGGUGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	14	chr3:57627389-57627402	DENND6A	HGNC:26635	ENSG00000174839	GGAGGCCAAGGUGG
hsa_m5C_1490	chr17	48621747	48621748	-	ENST00000311177	C1994	m5C	C5	5'-GGGACAAGUGGUCUGGGACAGGG-3'	.((((.....))))......... ( -2.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	23	chr17:48621730-48621752	HOXB9	HGNC:5120	ENSG00000170689	GGGACAAGUGGUCUGGGACAGGG
hsa_m5C_1491	chr11	119335231	119335232	+	ENST00000311413	C706	m5C	C12	5'-GGCUUCCCUGGCCUGGCUCCUGG-3'	((((.....)))).......... ( -5.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr11:119335221-119335243	RNF26	HGNC:14646	ENSG00000173456	GGCUUCCCUGGCCUGGCUCCUGG
hsa_m5C_1492	chr11	119335236	119335237	+	ENST00000311413	C711	m5C	C17	5'-GGCUUCCCUGGCCUGGCUCCUGG-3'	((((.....)))).......... ( -5.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr11:119335221-119335243	RNF26	HGNC:14646	ENSG00000173456	GGCUUCCCUGGCCUGGCUCCUGG
hsa_m5C_1493	chr11	119335239	119335240	+	ENST00000311413	C714	m5C	C20	5'-GGCUUCCCUGGCCUGGCUCCUGG-3'	((((.....)))).......... ( -5.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr11:119335221-119335243	RNF26	HGNC:14646	ENSG00000173456	GGCUUCCCUGGCCUGGCUCCUGG
hsa_m5C_1494	chr11	66276686	66276687	+	ENST00000311481	C1096	m5C	C6	5'-GGGAUCCAGGACCUGGGAUCCAGGGCCCUGGG-3'	.....(((((.(((((...)))))..))))). (-16.60)	loop	mRNA	Testis,HeLa,T24;293T;HeLa,siControl;HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	28418038;38168991;31061524;22344696	32	chr11:66276682-66276713	RAB1B	HGNC:18370	ENSG00000174903	GGGAUCCAGGACCUGGGAUCCAGGGCCCUGGG
hsa_m5C_1495	chr9	136808109	136808110	+	ENST00000311502	C163	m5C	C14	5'-GGGGGGGCCGGGGCCGCCGGG-3'	..((.(((....))).))... ( -9.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	21	chr9:136808097-136808117	RABL6	HGNC:24703	ENSG00000196642	GGGGGGGCCGGGGCCGCCGGG
hsa_m5C_1496	chr9	136835813	136835814	+	ENST00000311502	C1027	m5C	C5	5'-GGUGCAGCAGGAGACGGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr9:136835810-136835829	RABL6	HGNC:24703	ENSG00000196642	GGUGCAGCAGGAGACGGAGG
hsa_m5C_1497	chr9	136835816	136835817	+	ENST00000311502	C1030	m5C	C8	5'-GGUGCAGCAGGAGACGGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr9:136835810-136835829	RABL6	HGNC:24703	ENSG00000196642	GGUGCAGCAGGAGACGGAGG
hsa_m5C_1498	chr3	196577624	196577625	+	ENST00000311630	C816	m5C	C22	5'-GGGAAGUGUGGUGGGAGGGCCCUCUGGG-3'	.........((.(((....))).))... ( -4.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr3:196577604-196577631	FBXO45	HGNC:29148	ENSG00000174013	GGGAAGUGUGGUGGGAGGGCCCUCUGGG
hsa_m5C_1499	chr1	46316709	46316710	+	ENST00000311672	C471	m5C	C8	5'-GGUUUGGCUUAGGCUGG-3'	.....(((....))).. ( -2.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	17	chr1:46316703-46316719	UQCRH	HGNC:12590	ENSG00000173660	GGUUUGGCUUAGGCUGG
hsa_m5C_1500	chr1	46316715	46316716	+	ENST00000311672	C477	m5C	C14	5'-GGUUUGGCUUAGGCUGG-3'	.....(((....))).. ( -2.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	17	chr1:46316703-46316719	UQCRH	HGNC:12590	ENSG00000173660	GGUUUGGCUUAGGCUGG
hsa_m5C_1501	chr16	66884650	66884651	+	ENST00000311765	C547	m5C	C8	5'-GGAGGACCGGCGAGG-3'	((....))....... ( -0.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr16:66884644-66884658	PDP2	HGNC:30263	ENSG00000172840	GGAGGACCGGCGAGG
hsa_m5C_1502	chr16	66887850	66887851	+	ENST00000311765	C3747	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr16:66887846-66887860	PDP2	HGNC:30263	ENSG00000172840	GGAGGCUGAGGCAGG
hsa_m5C_1503	chr16	66887856	66887857	+	ENST00000311765	C3753	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr16:66887846-66887860	PDP2	HGNC:30263	ENSG00000172840	GGAGGCUGAGGCAGG
hsa_m5C_1504	chr7	130051369	130051370	-	ENST00000311873	C82	m5C	C23	5'-GGGAAGCAACUCGGCAGCGGACCAAGAUGG-3'	((...((.........))...))....... ( -3.50)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	30	chr7:130051363-130051392	ZC3HC1	HGNC:29913	ENSG00000091732	GGGAAGCAACUCGGCAGCGGACCAAGAUGG
hsa_m5C_1505	chr8	125431134	125431135	+	ENST00000311922	C778	m5C	C5	5'-GGGGCCGGCGGAGGCUCCGG-3'	((((((......)))))).. (-12.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr8:125431131-125431150	TRIB1	HGNC:16891	ENSG00000173334	GGGGCCGGCGGAGGCUCCGG
hsa_m5C_1506	chr8	125431146	125431147	+	ENST00000311922	C790	m5C	C17	5'-GGGGCCGGCGGAGGCUCCGG-3'	((((((......)))))).. (-12.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr8:125431131-125431150	TRIB1	HGNC:16891	ENSG00000173334	GGGGCCGGCGGAGGCUCCGG
hsa_m5C_1507	chr1	11840286	11840287	+	ENST00000312413	C2775	m5C	C5	5'-GGCACAGCUGGCUGGGGCUGUUCCGG-3'	((.((((((......)))))).)).. (-11.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr1:11840283-11840308	CLCN6	HGNC:2024	ENSG00000011021	GGCACAGCUGGCUGGGGCUGUUCCGG
hsa_m5C_1508	chr1	11834488	11834489	+	ENST00000312413	C1793	m5C	C4	5'-GGCCAAAUGGACAGGGG-3'	..((....))....... ( -0.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	17	chr1:11834486-11834502	CLCN6	HGNC:2024	ENSG00000011021	GGCCAAAUGGACAGGGG
hsa_m5C_1509	chr1	11842702	11842703	+	ENST00000312413	C5191	m5C	C20	5'-GGGAGUGGGGCCAAUGGGCCCCCGGCCCUGGCUUUGGG-3'	(((...((((((....))))))...))).......... (-19.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	38	chr1:11842684-11842721	CLCN6	HGNC:2024	ENSG00000011021	GGGAGUGGGGCCAAUGGGCCCCCGGCCCUGGCUUUGGG
hsa_m5C_1510	chr1	11842703	11842704	+	ENST00000312413	C5192	m5C	C21	5'-GGGAGUGGGGCCAAUGGGCCCCCGGCCCUGGCUUUGGG-3'	(((...((((((....))))))...))).......... (-19.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	38	chr1:11842684-11842721	CLCN6	HGNC:2024	ENSG00000011021	GGGAGUGGGGCCAAUGGGCCCCCGGCCCUGGCUUUGGG
hsa_m5C_1511	chr11	67350890	67350891	-	ENST00000312419	C1575	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Muscle	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	NA	15	chr11:67350888-67350902	POLD4	HGNC:14106	ENSG00000175482	GGAGGCUGAGGCAGG
hsa_m5C_1512	chr11	67367542	67367543	-	ENST00000312438	C159	m5C	C7	5'-GGGGACCCAGGGCCUGG-3'	.(((.((...))))).. ( -3.20)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr11:67367533-67367549	CLCF1	HGNC:17412	ENSG00000175505	GGGGACCCAGGGCCUGG
hsa_m5C_1513	chr11	65919447	65919448	+	ENST00000312515	C23	m5C	C6	5'-GGGAGCCGGGAGGCUGCGGG-3'	...((((....))))..... ( -6.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	20	chr11:65919443-65919462	DRAP1	HGNC:3019	ENSG00000175550	GGGAGCCGGGAGGCUGCGGG
hsa_m5C_1514	chr3	23965148	23965149	+	ENST00000312521	C1612	m5C	C3	5'-GGCUGGGACUUUUGAG^G-3'	NA	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	17	chr3:23965147-23965162;23967813-23967813	NR1D2	HGNC:7963	ENSG00000174738	GGCUGGGACUUUUGAGG
hsa_m5C_1515	chr3	150762894	150762895	-	ENST00000312960	C275	m5C	C9	5'-GGGCGGCCCCGCGGCAGGCAGG-3'	..((.(((....)))..))... ( -5.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr3:150762882-150762903	SIAH2	HGNC:10858	ENSG00000181788	GGGCGGCCCCGCGGCAGGCAGG
hsa_m5C_1516	chr3	150762893	150762894	-	ENST00000312960	C276	m5C	C10	5'-GGGCGGCCCCGCGGCAGGCAGG-3'	..((.(((....)))..))... ( -5.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr3:150762882-150762903	SIAH2	HGNC:10858	ENSG00000181788	GGGCGGCCCCGCGGCAGGCAGG
hsa_m5C_1517	chr3	150762891	150762892	-	ENST00000312960	C278	m5C	C12	5'-GGGCGGCCCCGCGGCAGGCAGG-3'	..((.(((....)))..))... ( -5.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr3:150762882-150762903	SIAH2	HGNC:10858	ENSG00000181788	GGGCGGCCCCGCGGCAGGCAGG
hsa_m5C_1518	chr3	150763093	150763094	-	ENST00000312960	C76	m5C	C22	5'-GGGGUUCGGGGCCCGGGACGCCGCCGGG-3'	((.((((........)))).))...... ( -9.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr3:150763088-150763115	SIAH2	HGNC:10858	ENSG00000181788	GGGGUUCGGGGCCCGGGACGCCGCCGGG
hsa_m5C_1519	chr17	82409391	82409392	-	ENST00000313056	C500	m5C	C5	5'-GGCUCUCCCUGGGAGGAUCUGACGG-3'	((.(((((...))))).))...... ( -4.70)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr17:82409372-82409396	OGFOD3	HGNC:26174	ENSG00000181396	GGCUCUCCCUGGGAGGAUCUGACGG
hsa_m5C_1520	chr17	82390586	82390587	-	ENST00000313056	C2872	m5C	C17	5'-GGGAACCCUCCUUGGUCAGGGCUGCAGGCUCUGGGCAGAUGGGG-3'	.....((((..(((.((((((((...)))))))).)))..)))) (-19.10)	loop	mRNA	HeLa,With in vitro transcribed m5C spike-ins;frontal_cortex,heart,293T,lung,spleen,Testis;293T;HeLa,siControl;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	28418038;31061524;38168991	44	chr17:82390560-82390603	OGFOD3	HGNC:26174	ENSG00000181396	GGGAACCCUCCUUGGUCAGGGCUGCAGGCUCUGGGCAGAUGGGG
hsa_m5C_1521	chr1	156722858	156722859	-	ENST00000313146	C2335	m5C	C8	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr1:156722852-156722866	ISG20L2	HGNC:25745	ENSG00000143319	GGGAGGCCGAGGCGG
hsa_m5C_1522	chr1	156722853	156722854	-	ENST00000313146	C2340	m5C	C13	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr1:156722852-156722866	ISG20L2	HGNC:25745	ENSG00000143319	GGGAGGCCGAGGCGG
hsa_m5C_1523	chr12	52170892	52170893	-	ENST00000313234	C1997	m5C	C17	5'-GGAAUUCCUGGGAAGGCUGG-3'	......(((....))).... ( -1.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr12:52170890-52170909	KRT80	HGNC:27056	ENSG00000167767	GGAAUUCCUGGGAAGGCUGG
hsa_m5C_1524	chr12	52191912	52191913	-	ENST00000313234	C88	m5C	C3	5'-GGCCGGGGGCACCAUGG-3'	..(((((....)).))) ( -3.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr12:52191899-52191915	KRT80	HGNC:27056	ENSG00000167767	GGCCGGGGGCACCAUGG
hsa_m5C_1525	chr12	52191911	52191912	-	ENST00000313234	C89	m5C	C4	5'-GGCCGGGGGCACCAUGG-3'	..(((((....)).))) ( -3.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr12:52191899-52191915	KRT80	HGNC:27056	ENSG00000167767	GGCCGGGGGCACCAUGG
hsa_m5C_1526	chr5	141320752	141320753	-	ENST00000313368	C32	m5C	C4	5'-GGACGGAGGGCCGG-3'	...(((....))). ( -3.00)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	30872485	14	chr5:141320743-141320756	TAF7	HGNC:11541	ENSG00000178913	GGACGGAGGGCCGG
hsa_m5C_1527	chr7	73593732	73593733	-	ENST00000313375	C2721	m5C	C12	5'-GGGGGGUGGAGCAGGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr7:73593729-73593744	MLXIPL	HGNC:12744	ENSG00000009950	GGGGGGUGGAGCAGGG
hsa_m5C_1528	chr10	14904203	14904204	+	ENST00000313519	C2976	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr10:14904199-14904213	SUV39H2	HGNC:17287	ENSG00000152455	GGAGGCUGAGGCAGG
hsa_m5C_1529	chr18	23749459	23749460	+	ENST00000313654	C829	m5C	C4	5'-GGGCGGGAGGCAAAUAUGGCUGUCACCCGG-3'	(((.((.((.((....)).)).)).))).. (-12.10)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	30	chr18:23749457-23749486	LAMA3	HGNC:6483	ENSG00000053747	GGGCGGGAGGCAAAUAUGGCUGUCACCCGG
hsa_m5C_1530	chrX	1601264	1601265	+	ENST00000313871	C1944	m5C	C18	5'-GGGAGCCCAGCAAGGGCCGGGGCCGGG-3'	....((((.((....))..)))).... ( -9.10)	loop	mRNA	liver	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	27	chrX:1601248-1601274	AKAP17A	HGNC:18783	ENSG00000197976	GGGAGCCCAGCAAGGGCCGGGGCCGGG
hsa_m5C_1531	chrX	1591719	1591720	+	ENST00000313871	C117	m5C	C25	5'-GGGAUCGUCGAGGGACGGCGGGAGCUUGGG-3'	.....((((....))))((....))..... ( -6.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	30	chrX:1591696-1591725	AKAP17A	HGNC:18783	ENSG00000197976	GGGAUCGUCGAGGGACGGCGGGAGCUUGGG
hsa_m5C_1532	chrX	1593453	1593454	+	ENST00000313871	C177	m5C	C5	5'-GGUCCCGGAGGCUAUGG-3'	((((.....)))).... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chrX:1593450-1593466	AKAP17A	HGNC:18783	ENSG00000197976	GGUCCCGGAGGCUAUGG
hsa_m5C_1533	chr11	45811362	45811363	+	ENST00000314134	C1776	m5C	C20	5'-GGCACCCUGGAUGGCCCGGCCCCGGGG-3'	....((((((..(((...))))))))) (-12.40)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038;22344696	27	chr11:45811344-45811370	SLC35C1	HGNC:20197	ENSG00000181830	GGCACCCUGGAUGGCCCGGCCCCGGGG
hsa_m5C_1534	chr11	45811363	45811364	+	ENST00000314134	C1777	m5C	C21	5'-GGCACCCUGGAUGGCCCGGCCCCGGGG-3'	....((((((..(((...))))))))) (-12.40)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038;22344696	27	chr11:45811344-45811370	SLC35C1	HGNC:20197	ENSG00000181830	GGCACCCUGGAUGGCCCGGCCCCGGGG
hsa_m5C_1535	chr11	45811364	45811365	+	ENST00000314134	C1778	m5C	C22	5'-GGCACCCUGGAUGGCCCGGCCCCGGGG-3'	....((((((..(((...))))))))) (-12.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	27	chr11:45811344-45811370	SLC35C1	HGNC:20197	ENSG00000181830	GGCACCCUGGAUGGCCCGGCCCCGGGG
hsa_m5C_1536	chr11	45811365	45811366	+	ENST00000314134	C1779	m5C	C23	5'-GGCACCCUGGAUGGCCCGGCCCCGGGG-3'	....((((((..(((...))))))))) (-12.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	27	chr11:45811344-45811370	SLC35C1	HGNC:20197	ENSG00000181830	GGCACCCUGGAUGGCCCGGCCCCGGGG
hsa_m5C_1537	chr11	45811265	45811266	+	ENST00000314134	C1679	m5C	C34	5'-GGGCGGCUCCUCCGCCUACACCUGGGUCAGGGGCUGGG-3'	...((((((((..(((((....))))).)))))))).. (-17.10)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	38	chr11:45811233-45811270	SLC35C1	HGNC:20197	ENSG00000181830	GGGCGGCUCCUCCGCCUACACCUGGGUCAGGGGCUGGG
hsa_m5C_1538	chr11	8687322	8687323	+	ENST00000314138	C1986	m5C	C6	5'-GGAGGCGGAGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	11	chr11:8687318-8687328	RPL27A	HGNC:10329	ENSG00000166441	GGAGGCGGAGG
hsa_m5C_1539	chr12	118061123	118061124	-	ENST00000315436	C56	m5C	C13	5'-GGGCGGGCGGCGCGGGGGCGGCAUGAGGGCCCGCGGCCCGGG-3'	...(((((..((((((.............))))))))))).. (-21.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	42	chr12:118061095-118061136	WSB2	HGNC:19222	ENSG00000176871	GGGCGGGCGGCGCGGGGGCGGCAUGAGGGCCCGCGGCCCGGG
hsa_m5C_1540	chr12	118061104	118061105	-	ENST00000315436	C75	m5C	C32	5'-GGGCGGGCGGCGCGGGGGCGGCAUGAGGGCCCGCGGCCCGGG-3'	...(((((..((((((.............))))))))))).. (-21.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	42	chr12:118061095-118061136	WSB2	HGNC:19222	ENSG00000176871	GGGCGGGCGGCGCGGGGGCGGCAUGAGGGCCCGCGGCCCGGG
hsa_m5C_1541	chr12	118061102	118061103	-	ENST00000315436	C77	m5C	C34	5'-GGGCGGGCGGCGCGGGGGCGGCAUGAGGGCCCGCGGCCCGGG-3'	...(((((..((((((.............))))))))))).. (-21.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	42	chr12:118061095-118061136	WSB2	HGNC:19222	ENSG00000176871	GGGCGGGCGGCGCGGGGGCGGCAUGAGGGCCCGCGGCCCGGG
hsa_m5C_1542	chr19	464028	464029	-	ENST00000315489	C921	m5C	C11	5'-GGGGCGGCCCCGG-3'	((((...)))).. ( -6.20)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	13	chr19:464027-464039	CIMAP1D	HGNC:26841	ENSG00000181781	GGGGCGGCCCCGG
hsa_m5C_1543	chr17	8220934	8220935	-	ENST00000315707	C1789	m5C	C11	5'-GGACAGGCCUCGUGGCGCAACGG-3'	......(((....)))....... ( -4.80)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr17:8220923-8220945	LINC00324	HGNC:26628	ENSG00000178977	GGACAGGCCUCGUGGCGCAACGG
hsa_m5C_1544	chr17	8220927	8220928	-	ENST00000315707	C1796	m5C	C18	5'-GGACAGGCCUCGUGGCGCAACGG-3'	......(((....)))....... ( -4.80)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr17:8220923-8220945	LINC00324	HGNC:26628	ENSG00000178977	GGACAGGCCUCGUGGCGCAACGG
hsa_m5C_1545	chr1	36176719	36176720	+	ENST00000316156	C1599	m5C	C13	5'-GGAGAAGAAGGACAAGGAGCGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr1:36176708-36176729	MAP7D1	HGNC:25514	ENSG00000116871	GGAGAAGAAGGACAAGGAGCGG
hsa_m5C_1546	chr1	36176726	36176727	+	ENST00000316156	C1606	m5C	C20	5'-GGAGAAGAAGGACAAGGAGCGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr1:36176708-36176729	MAP7D1	HGNC:25514	ENSG00000116871	GGAGAAGAAGGACAAGGAGCGG
hsa_m5C_1547	chr1	36156320	36156321	+	ENST00000316156	C357	m5C	C10	5'-GGGCCGGGCCGGGCCGGG-3'	.((((......))))... ( -8.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	18	chr1:36156312-36156329	MAP7D1	HGNC:25514	ENSG00000116871	GGGCCGGGCCGGGCCGGG
hsa_m5C_1548	chr5	178626991	178626992	-	ENST00000316308	C59	m5C	C20	5'-GGCCGAGGAGGGAAGACGGCAGUUUGG-3'	.((((...........))))....... ( -5.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr5:178626985-178627011	CLK4	HGNC:13659	ENSG00000113240	GGCCGAGGAGGGAAGACGGCAGUUUGG
hsa_m5C_1549	chr12	125118642	125118643	+	ENST00000316519	C1149	m5C	C4	5'-G^GUCGGCUGGAUGAUGUGG-3'	.((((......)))).... ( -1.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr12:125114557-125114557;125118641-125118658	AACS	HGNC:21298	ENSG00000081760	GGUCGGCUGGAUGAUGUGG
hsa_m5C_1550	chr20	3926703	3926704	+	ENST00000316562	C5301	m5C	C7	5'-GGAAGGCCAAGGCGG-3'	.....((....)).. ( -1.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr20:3926698-3926712	PANK2	HGNC:15894	ENSG00000125779	GGAAGGCCAAGGCGG
hsa_m5C_1551	chr20	3926704	3926705	+	ENST00000316562	C5302	m5C	C8	5'-GGAAGGCCAAGGCGG-3'	.....((....)).. ( -1.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr20:3926698-3926712	PANK2	HGNC:15894	ENSG00000125779	GGAAGGCCAAGGCGG
hsa_m5C_1552	chr20	3926709	3926710	+	ENST00000316562	C5307	m5C	C13	5'-GGAAGGCCAAGGCGG-3'	.....((....)).. ( -1.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr20:3926698-3926712	PANK2	HGNC:15894	ENSG00000125779	GGAAGGCCAAGGCGG
hsa_m5C_1553	chr20	3907950	3907951	+	ENST00000316562	C832	m5C	C12	5'-GGACUGGAUAUCGGUGG-3'	..((((.....)))).. ( -2.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr20:3907940-3907956	PANK2	HGNC:15894	ENSG00000125779	GGACUGGAUAUCGGUGG
hsa_m5C_1554	chr6	35321455	35321456	+	ENST00000316637	C1981	m5C	C5	5'-GGACCUGGCCACAGCUGGCCUGUGG-3'	...((.(((((....)))))...)) ( -8.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr6:35321452-35321476	DEF6	HGNC:2760	ENSG00000023892	GGACCUGGCCACAGCUGGCCUGUGG
hsa_m5C_1555	chr18	59903124	59903125	+	ENST00000316660	C719	m5C	C3	5'-GGCGGCUGGGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	11	chr18:59903123-59903133	PMAIP1	HGNC:9108	ENSG00000141682	GGCGGCUGGGG
hsa_m5C_1556	chr18	59903127	59903128	+	ENST00000316660	C722	m5C	C6	5'-GGCGGCUGGGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	11	chr18:59903123-59903133	PMAIP1	HGNC:9108	ENSG00000141682	GGCGGCUGGGG
hsa_m5C_1557	chr7	100158639	100158640	-	ENST00000316937	C84	m5C	C19	5'-GGGUUCGUUGCCCCGGUGCCGGGACCGGG-3'	...........((((((......)))))) (-10.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr7:100158630-100158658	TRAPPC14	HGNC:25604	ENSG00000146826	GGGUUCGUUGCCCCGGUGCCGGGACCGGG
hsa_m5C_1558	chr7	100158638	100158639	-	ENST00000316937	C85	m5C	C20	5'-GGGUUCGUUGCCCCGGUGCCGGGACCGGG-3'	...........((((((......)))))) (-10.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr7:100158630-100158658	TRAPPC14	HGNC:25604	ENSG00000146826	GGGUUCGUUGCCCCGGUGCCGGGACCGGG
hsa_m5C_1559	chr8	38382251	38382252	-	ENST00000317025	C20	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	11	chr8:38382247-38382257	NSD3	HGNC:12767	ENSG00000147548	GGCGGCGGCGG
hsa_m5C_1560	chr8	38382248	38382249	-	ENST00000317025	C23	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	11	chr8:38382247-38382257	NSD3	HGNC:12767	ENSG00000147548	GGCGGCGGCGG
hsa_m5C_1561	chr16	58582885	58582886	-	ENST00000317147	C1224	m5C	C4	5'-GGGCAGUGGGAUCUGGAGUGAUGG-3'	...(((......)))......... ( -1.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	24	chr16:58582866-58582889	CNOT1	HGNC:7877	ENSG00000125107	GGGCAGUGGGAUCUGGAGUGAUGG
hsa_m5C_1562	chr16	58582876	58582877	-	ENST00000317147	C1233	m5C	C13	5'-GGGCAGUGGGAUCUGGAGUGAUGG-3'	...(((......)))......... ( -1.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	24	chr16:58582866-58582889	CNOT1	HGNC:7877	ENSG00000125107	GGGCAGUGGGAUCUGGAGUGAUGG
hsa_m5C_1563	chr10	72067693	72067694	-	ENST00000317376	C956	m5C	C7	5'-GGAGAUCGGCUGCGGGACUGG-3'	..((.(((....)))..)).. ( -1.40)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	21	chr10:72067680-72067700	SPOCK2	HGNC:13564	ENSG00000107742	GGAGAUCGGCUGCGGGACUGG
hsa_m5C_1564	chr11	62686827	62686828	-	ENST00000317449	C1790	m5C	C3	5'-GGCAUGGUGGUGG-3'	..(((....))). ( -0.40)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31061524	13	chr11:62686818-62686830	LRRN4CL	HGNC:33724	ENSG00000177363	GGCAUGGUGGUGG
hsa_m5C_1565	chr11	65412133	65412134	+	ENST00000317568	C2294	m5C	C9	5'-GGAGGUGGCUAUCCUGUGG-3'	(((........)))..... ( -2.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr11:65412126-65412144	FRMD8	HGNC:25462	ENSG00000126391	GGAGGUGGCUAUCCUGUGG
hsa_m5C_1566	chr11	65413043	65413044	+	ENST00000317568	C3204	m5C	C3	5'-GGCAGGAGUGCAGUGGCGCAUCUCGG-3'	...(((.((((....)))).)))... ( -6.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chr11:65413042-65413067	FRMD8	HGNC:25462	ENSG00000126391	GGCAGGAGUGCAGUGGCGCAUCUCGG
hsa_m5C_1567	chr11	65413051	65413052	+	ENST00000317568	C3212	m5C	C11	5'-GGCAGGAGUGCAGUGGCGCAUCUCGG-3'	...(((.((((....)))).)))... ( -6.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chr11:65413042-65413067	FRMD8	HGNC:25462	ENSG00000126391	GGCAGGAGUGCAGUGGCGCAUCUCGG
hsa_m5C_1568	chr11	65413057	65413058	+	ENST00000317568	C3218	m5C	C17	5'-GGCAGGAGUGCAGUGGCGCAUCUCGG-3'	...(((.((((....)))).)))... ( -6.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chr11:65413042-65413067	FRMD8	HGNC:25462	ENSG00000126391	GGCAGGAGUGCAGUGGCGCAUCUCGG
hsa_m5C_1569	chr11	65411526	65411527	+	ENST00000317568	C1687	m5C	C16	5'-GGGCCCGGGGCCAUGCCCGGGCUGUGCAAAGCUGGCCAGGG-3'	.((((((((......)))))))).................. (-18.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	41	chr11:65411512-65411552	FRMD8	HGNC:25462	ENSG00000126391	GGGCCCGGGGCCAUGCCCGGGCUGUGCAAAGCUGGCCAGGG
hsa_m5C_1570	chr11	65411527	65411528	+	ENST00000317568	C1688	m5C	C17	5'-GGGCCCGGGGCCAUGCCCGGGCUGUGCAAAGCUGGCCAGGG-3'	.((((((((......)))))))).................. (-18.20)	loop	mRNA	HeLa	RBS-Seq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30872485	41	chr11:65411512-65411552	FRMD8	HGNC:25462	ENSG00000126391	GGGCCCGGGGCCAUGCCCGGGCUGUGCAAAGCUGGCCAGGG
hsa_m5C_1571	chr18	24014785	24014786	+	ENST00000317571	C33	m5C	C4	5'-GGGCAGGUAGAGCCGGGCUCCGGGCGCGCGCGGG-3'	...........((((.(((...))).)).))... ( -8.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	34	chr18:24014783-24014816	TTC39C	HGNC:26595	ENSG00000168234	GGGCAGGUAGAGCCGGGCUCCGGGCGCGCGCGGG
hsa_m5C_1572	chr19	13913476	13913477	+	ENST00000318003	C828	m5C	C3	5'-GGCCAUAGGAAAAGGCCCGG-3'	((((.........))))... ( -5.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr19:13913475-13913494	CC2D1A	HGNC:30237	ENSG00000132024	GGCCAUAGGAAAAGGCCCGG
hsa_m5C_1573	chr9	129095448	129095449	-	ENST00000318080	C2113	m5C	C21	5'-GGCGCAUUACCUGGAGAAGGCGCUCCUGG-3'	.........((.((((......)))).)) ( -7.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr9:129095441-129095469	CRAT	HGNC:2342	ENSG00000095321	GGCGCAUUACCUGGAGAAGGCGCUCCUGG
hsa_m5C_1574	chr18	49487182	49487183	-	ENST00000318240	C52	m5C	C12	5'-GGGCUAGCGGCCUGGGUUGGG-3'	(((((...)))))........ ( -5.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	21	chr18:49487174-49487194	C18orf32	HGNC:31690	ENSG00000177576	GGGCUAGCGGCCUGGGUUGGG
hsa_m5C_1575	chr2	241558877	241558878	+	ENST00000318407	C134	m5C	C12	5'-GGGGCGGGCGCCGGGGCGGG-3'	..(((....)))........ ( -4.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	20	chr2:241558867-241558886	BOK	HGNC:1087	ENSG00000176720	GGGGCGGGCGCCGGGGCGGG
hsa_m5C_1576	chr15	91916124	91916125	+	ENST00000318445	C514	m5C	C16	5'-GGGGCACGCGGGCACCGG-3'	((.((......)).)).. ( -3.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr15:91916110-91916127	SLCO3A1	HGNC:10952	ENSG00000176463	GGGGCACGCGGGCACCGG
hsa_m5C_1577	chr19	7925242	7925243	-	ENST00000318978	C485	m5C	C15	5'-GGGGUCUCAGAGGGCCGGCCCGGCGGGGGGCGCCGCGGG-3'	..(((((....)))))..(((((((.....))))).)). (-17.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	39	chr19:7925219-7925257	CTXN1	HGNC:31108	ENSG00000178531	GGGGUCUCAGAGGGCCGGCCCGGCGGGGGGCGCCGCGGG
hsa_m5C_1578	chr19	7925241	7925242	-	ENST00000318978	C486	m5C	C16	5'-GGGGUCUCAGAGGGCCGGCCCGGCGGGGGGCGCCGCGGG-3'	..(((((....)))))..(((((((.....))))).)). (-17.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	39	chr19:7925219-7925257	CTXN1	HGNC:31108	ENSG00000178531	GGGGUCUCAGAGGGCCGGCCCGGCGGGGGGCGCCGCGGG
hsa_m5C_1579	chr19	7925226	7925227	-	ENST00000318978	C501	m5C	C31	5'-GGGGUCUCAGAGGGCCGGCCCGGCGGGGGGCGCCGCGGG-3'	..(((((....)))))..(((((((.....))))).)). (-17.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	39	chr19:7925219-7925257	CTXN1	HGNC:31108	ENSG00000178531	GGGGUCUCAGAGGGCCGGCCCGGCGGGGGGCGCCGCGGG
hsa_m5C_1580	chr19	7925282	7925283	-	ENST00000318978	C445	m5C	C14	5'-GGUGUGAGGGGCGCGG-3'	.((((.....)))).. ( -3.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr19:7925281-7925296	CTXN1	HGNC:31108	ENSG00000178531	GGUGUGAGGGGCGCGG
hsa_m5C_1581	chr12	122078996	122078997	+	ENST00000319080	C242	m5C	C12	5'-GGCGCGGCCACCCCGGCCCGG-3'	..((.((((.....)))))). ( -9.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr12:122078986-122079006	MLXIP	HGNC:17055	ENSG00000175727	GGCGCGGCCACCCCGGCCCGG
hsa_m5C_1582	chr12	122079002	122079003	+	ENST00000319080	C248	m5C	C18	5'-GGCGCGGCCACCCCGGCCCGG-3'	..((.((((.....)))))). ( -9.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr12:122078986-122079006	MLXIP	HGNC:17055	ENSG00000175727	GGCGCGGCCACCCCGGCCCGG
hsa_m5C_1583	chr12	122135499	122135500	+	ENST00000319080	C1964	m5C	C13	5'-G^GCUCCUGGGGUCCCGG-3'	(((((...))))).... ( -3.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr12:122135345-122135345;122135489-122135504	MLXIP	HGNC:17055	ENSG00000175727	GGCUCCUGGGGUCCCGG
hsa_m5C_1584	chr12	122079045	122079046	+	ENST00000319080	C291	m5C	C9	5'-GGGCCGGGCCGGGCCGCGAGG-3'	.((((......))))...... ( -8.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr12:122079038-122079058	MLXIP	HGNC:17055	ENSG00000175727	GGGCCGGGCCGGGCCGCGAGG
hsa_m5C_1585	chr22	36266764	36266765	+	ENST00000319136	C2244	m5C	C3	5'-GGCAUGGUGGCGG-3'	.((......)).. ( -1.00)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31061524	13	chr22:36266763-36266775	APOL1	HGNC:618	ENSG00000100342	GGCAUGGUGGCGG
hsa_m5C_1586	chr22	36266669	36266670	+	ENST00000319136	C2149	m5C	C7	5'-GGGAGGCCAAGGCGG-3'	.....((....)).. ( -1.70)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	15	chr22:36266664-36266678	APOL1	HGNC:618	ENSG00000100342	GGGAGGCCAAGGCGG
hsa_m5C_1587	chr22	36266670	36266671	+	ENST00000319136	C2150	m5C	C8	5'-GGGAGGCCAAGGCGG-3'	.....((....)).. ( -1.70)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	15	chr22:36266664-36266678	APOL1	HGNC:618	ENSG00000100342	GGGAGGCCAAGGCGG
hsa_m5C_1588	chr22	36266675	36266676	+	ENST00000319136	C2155	m5C	C13	5'-GGGAGGCCAAGGCGG-3'	.....((....)).. ( -1.70)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	15	chr22:36266664-36266678	APOL1	HGNC:618	ENSG00000100342	GGGAGGCCAAGGCGG
hsa_m5C_1589	chr3	119430359	119430360	-	ENST00000319172	C3442	m5C	C12	5'-GGAAAUCAGGACAAGGAAAUAGUGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr3:119430347-119430371	TMEM39A	HGNC:25600	ENSG00000176142	GGAAAUCAGGACAAGGAAAUAGUGG
hsa_m5C_1590	chr3	126543067	126543068	+	ENST00000319340	C1694	m5C	C10	5'-GGGCCGUCCCGGGAGCCAGGUGGG-3'	...(((.((.((...)).))))). ( -5.50)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	24	chr3:126543059-126543082	CHST13	HGNC:21755	ENSG00000180767	GGGCCGUCCCGGGAGCCAGGUGGG
hsa_m5C_1591	chr17	43532881	43532882	-	ENST00000319349	C810	m5C	C9	5'-GGAGGGGGCCGG-3'	((......)).. ( -0.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	12	chr17:43532879-43532890	ETV4	HGNC:3493	ENSG00000175832	GGAGGGGGCCGG
hsa_m5C_1592	chr17	43532880	43532881	-	ENST00000319349	C811	m5C	C10	5'-GGAGGGGGCCGG-3'	((......)).. ( -0.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	12	chr17:43532879-43532890	ETV4	HGNC:3493	ENSG00000175832	GGAGGGGGCCGG
hsa_m5C_1593	chr17	43545632	43545633	-	ENST00000319349	C192	m5C	C20	5'-GGGGCCCCGGCCGUGCGGCCGGAGGG-3'	....((((((((....)))))).)). (-15.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr17:43545627-43545652	ETV4	HGNC:3493	ENSG00000175832	GGGGCCCCGGCCGUGCGGCCGGAGGG
hsa_m5C_1594	chr17	43546290	43546291	-	ENST00000319349	C50	m5C	C15	5'-GGUGCGCUGGGGACCCGGGGCCGGGG-3'	...((.((((....)))).))..... ( -9.10)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4hunter score>=1.2:(Medium)	RMBase database	28418038	26	chr17:43546280-43546305	ETV4	HGNC:3493	ENSG00000175832	GGUGCGCUGGGGACCCGGGGCCGGGG
hsa_m5C_1595	chr17	76390618	76390619	-	ENST00000319380	C4214	m5C	C9	5'-GGGUGUUCCAGGGCCUGCCGCGGGGCUCUCUGGG-3'	.......((((((...(((....))).)))))). (-13.80)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	34	chr17:76390594-76390627	UBE2O	HGNC:29554	ENSG00000175931	GGGUGUUCCAGGGCCUGCCGCGGGGCUCUCUGGG
hsa_m5C_1596	chr13	26050892	26050893	-	ENST00000319420	C1124	m5C	C3	5'-GGCGGCGGGGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	30526041	11	chr13:26050885-26050895	SHISA2	HGNC:20366	ENSG00000180730	GGCGGCGGGGG
hsa_m5C_1597	chr17	44187232	44187233	+	ENST00000319511	C28	m5C	C11	5'-GGGGUGUGGACGG-3'	NA	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	13	chr17:44187223-44187235	TMUB2	HGNC:28459	ENSG00000168591	GGGGUGUGGACGG
hsa_m5C_1598	chr7	149726011	149726012	+	ENST00000319551	C1825	m5C	C5	5'-GGACCUGGAUUUUGGGAGUCCUGUGGGGAACCAGGGG-3'	...((........))....(((.(((....))).))) (-10.00)	bulge	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	37	chr7:149726008-149726044	KRBA1	HGNC:22228	ENSG00000133619	GGACCUGGAUUUUGGGAGUCCUGUGGGGAACCAGGGG
hsa_m5C_1599	chr7	149723751	149723752	+	ENST00000319551	C1190	m5C	C9	5'-GGCGGUUUCAGGGG-3'	NA	loop	mRNA	HeLa	UBS-seq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;38168991	31061524;38168991	14	chr7:149723744-149723757	KRBA1	HGNC:22228	ENSG00000133619	GGCGGUUUCAGGGG
hsa_m5C_1600	chr16	88534714	88534715	+	ENST00000319555	C3116	m5C	C4	5'-GGACGGCCUCGGCCCGG-3'	....(((....)))... ( -5.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr16:88534712-88534728	ZFPM1	HGNC:19762	ENSG00000179588	GGACGGCCUCGGCCCGG
hsa_m5C_1601	chr16	88535254	88535255	+	ENST00000319555	C3656	m5C	C3	5'-GGCCCGGAGUGGCUGG-3'	((((......)))).. ( -4.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr16:88535253-88535268	ZFPM1	HGNC:19762	ENSG00000179588	GGCCCGGAGUGGCUGG
hsa_m5C_1602	chr16	88535255	88535256	+	ENST00000319555	C3657	m5C	C4	5'-GGCCCGGAGUGGCUGG-3'	((((......)))).. ( -4.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr16:88535253-88535268	ZFPM1	HGNC:19762	ENSG00000179588	GGCCCGGAGUGGCUGG
hsa_m5C_1603	chr16	88535264	88535265	+	ENST00000319555	C3666	m5C	C13	5'-GGCCCGGAGUGGCUGG-3'	((((......)))).. ( -4.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr16:88535253-88535268	ZFPM1	HGNC:19762	ENSG00000179588	GGCCCGGAGUGGCUGG
hsa_m5C_1604	chr16	88534618	88534619	+	ENST00000319555	C3020	m5C	C7	5'-GGCCGGCCCGGGGGUCGAGG-3'	...(((((....)))))... ( -6.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr16:88534613-88534632	ZFPM1	HGNC:19762	ENSG00000179588	GGCCGGCCCGGGGGUCGAGG
hsa_m5C_1605	chr15	72199400	72199401	-	ENST00000319622	C2345	m5C	C4	5'-GGACUGGAGGCCCCUGG-3'	...((((......)))) ( -0.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr15:72199388-72199404	PKM	HGNC:9021	ENSG00000067225	GGACUGGAGGCCCCUGG
hsa_m5C_1606	chr15	72199392	72199393	-	ENST00000319622	C2353	m5C	C12	5'-GGACUGGAGGCCCCUGG-3'	...((((......)))) ( -0.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr15:72199388-72199404	PKM	HGNC:9021	ENSG00000067225	GGACUGGAGGCCCCUGG
hsa_m5C_1607	chr15	72199391	72199392	-	ENST00000319622	C2354	m5C	C13	5'-GGACUGGAGGCCCCUGG-3'	...((((......)))) ( -0.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr15:72199388-72199404	PKM	HGNC:9021	ENSG00000067225	GGACUGGAGGCCCCUGG
hsa_m5C_1608	chr15	72199390	72199391	-	ENST00000319622	C2355	m5C	C14	5'-GGACUGGAGGCCCCUGG-3'	...((((......)))) ( -0.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr15:72199388-72199404	PKM	HGNC:9021	ENSG00000067225	GGACUGGAGGCCCCUGG
hsa_m5C_1609	chr15	72230999	72231000	-	ENST00000319622	C387	m5C	C16	5'-GGGCGGCGCAGGAUCCAGGGCGUCUGGG-3'	....(((((..........))))).... ( -6.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr15:72230988-72231015	PKM	HGNC:9021	ENSG00000067225	GGGCGGCGCAGGAUCCAGGGCGUCUGGG
hsa_m5C_1610	chr16	31093414	31093415	-	ENST00000319788	C391	m5C	C5	5'-GGGGCAGGGGUUUCGGGCUGGUGG-3'	(((((....))))).......... ( -2.50)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	24	chr16:31093396-31093419	VKORC1	HGNC:23663	ENSG00000167397	GGGGCAGGGGUUUCGGGCUGGUGG
hsa_m5C_1611	chr11	767936	767937	-	ENST00000319863	C3648	m5C	C6	5'-GGAGGCGGAGG-3'	NA	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;RMVar database	28418038	11	chr11:767932-767942	GATD1	HGNC:26616	ENSG00000177225	GGAGGCGGAGG
hsa_m5C_1612	chr11	768103	768104	-	ENST00000319863	C3481	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr11:768095-768109	GATD1	HGNC:26616	ENSG00000177225	GGAGGCUGAGGCAGG
hsa_m5C_1613	chr11	768097	768098	-	ENST00000319863	C3487	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr11:768095-768109	GATD1	HGNC:26616	ENSG00000177225	GGAGGCUGAGGCAGG
hsa_m5C_1614	chr11	767968	767969	-	ENST00000319863	C3616	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr11:767960-767974	GATD1	HGNC:26616	ENSG00000177225	GGAGGCUGAGGCAGG
hsa_m5C_1615	chr11	767962	767963	-	ENST00000319863	C3622	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa;HeLa,siControl;Muscle,T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	15	chr11:767960-767974	GATD1	HGNC:26616	ENSG00000177225	GGAGGCUGAGGCAGG
hsa_m5C_1616	chr11	769600	769601	-	ENST00000319863	C1984	m5C	C8	5'-GGCUGGGCGCGGUGG-3'	.((((....)))).. ( -2.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr11:769594-769608	GATD1	HGNC:26616	ENSG00000177225	GGCUGGGCGCGGUGG
hsa_m5C_1617	chr11	769598	769599	-	ENST00000319863	C1986	m5C	C10	5'-GGCUGGGCGCGGUGG-3'	.((((....)))).. ( -2.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr11:769594-769608	GATD1	HGNC:26616	ENSG00000177225	GGCUGGGCGCGGUGG
hsa_m5C_1618	chr11	769868	769869	-	ENST00000319863	C1716	m5C	C7	5'-GGGAGGCCGAGGCGGG-3'	......(((...))). ( -1.70)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr11:769860-769875	GATD1	HGNC:26616	ENSG00000177225	GGGAGGCCGAGGCGGG
hsa_m5C_1619	chr11	769867	769868	-	ENST00000319863	C1717	m5C	C8	5'-GGGAGGCCGAGGCGGG-3'	......(((...))). ( -1.70)	loop	mRNA	MRC-5;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	16	chr11:769860-769875	GATD1	HGNC:26616	ENSG00000177225	GGGAGGCCGAGGCGGG
hsa_m5C_1620	chr11	769862	769863	-	ENST00000319863	C1722	m5C	C13	5'-GGGAGGCCGAGGCGGG-3'	......(((...))). ( -1.70)	loop	mRNA	MRC-5;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	16	chr11:769860-769875	GATD1	HGNC:26616	ENSG00000177225	GGGAGGCCGAGGCGGG
hsa_m5C_1621	chr2	199926540	199926541	+	ENST00000319974	C1959	m5C	C6	5'-GGAGGCUAAGGCAGG-3'	....((....))... ( -1.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr2:199926536-199926550	C2orf69	HGNC:26799	ENSG00000178074	GGAGGCUAAGGCAGG
hsa_m5C_1622	chr17	50077043	50077044	+	ENST00000320031	C2323	m5C	C5	5'-GGAGCGCUCCGGGGAGG-3'	(((....)))....... ( -2.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	17	chr17:50077040-50077056	ITGA3	HGNC:6139	ENSG00000005884	GGAGCGCUCCGGGGAGG
hsa_m5C_1623	chr17	50077045	50077046	+	ENST00000320031	C2325	m5C	C7	5'-GGAGCGCUCCGGGGAGG-3'	(((....)))....... ( -2.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	17	chr17:50077040-50077056	ITGA3	HGNC:6139	ENSG00000005884	GGAGCGCUCCGGGGAGG
hsa_m5C_1624	chr17	50071425	50071426	+	ENST00000320031	C1197	m5C	C10	5'-GGAGGCAGGCGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	22344696	12	chr17:50071417-50071428	ITGA3	HGNC:6139	ENSG00000005884	GGAGGCAGGCGG
hsa_m5C_1625	chr10	24952563	24952564	-	ENST00000320152	C43	m5C	C21	5'-GGGAGAAACAUGGCCGGGAGCAGCGAGG-3'	((...........))............. ( -0.60)	bulge	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr10:24952557-24952584	PRTFDC1	HGNC:23333	ENSG00000099256	GGGAGAAACAUGGCCGGGAGCAGCGAGG
hsa_m5C_1626	chr3	48446945	48446946	+	ENST00000320211	C210	m5C	C30	5'-GGGCACCGGGCACCCCCCGAGCAAGCGGGCCCGGG-3'	.....((((((.....(((......))))))))). (-14.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038;22344696	35	chr3:48446917-48446951	ATRIP	HGNC:33499	ENSG00000164053	GGGCACCGGGCACCCCCCGAGCAAGCGGGCCCGGG
hsa_m5C_1627	chr3	48446946	48446947	+	ENST00000320211	C211	m5C	C31	5'-GGGCACCGGGCACCCCCCGAGCAAGCGGGCCCGGG-3'	.....((((((.....(((......))))))))). (-14.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	35	chr3:48446917-48446951	ATRIP	HGNC:33499	ENSG00000164053	GGGCACCGGGCACCCCCCGAGCAAGCGGGCCCGGG
hsa_m5C_1628	chr3	48446947	48446948	+	ENST00000320211	C212	m5C	C32	5'-GGGCACCGGGCACCCCCCGAGCAAGCGGGCCCGGG-3'	.....((((((.....(((......))))))))). (-14.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	35	chr3:48446917-48446951	ATRIP	HGNC:33499	ENSG00000164053	GGGCACCGGGCACCCCCCGAGCAAGCGGGCCCGGG
hsa_m5C_1629	chr11	791184	791185	-	ENST00000320230	C2086	m5C	C7	5'-GGGGAUCUGGCCUGGCCCUUGGGGAUGGGGCUGCUGGGG-3'	.....((((((..((((((.......)))))))))))). (-14.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	39	chr11:791153-791191	SLC25A22	HGNC:19954	ENSG00000177542	GGGGAUCUGGCCUGGCCCUUGGGGAUGGGGCUGCUGGGG
hsa_m5C_1630	chr8	2001774	2001775	+	ENST00000320248	C1750	m5C	C3	5'-GGCGCAUGGCGGGCGUGCGG-3'	..((((((.....)))))). ( -8.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	20	chr8:2001773-2001792	KBTBD11	HGNC:29104	ENSG00000176595	GGCGCAUGGCGGGCGUGCGG
hsa_m5C_1631	chr6	161134242	161134243	-	ENST00000320285	C3647	m5C	C6	5'-GGUUCCAGGCUGGAGG-3'	..(((((...))))). ( -2.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr6:161134233-161134248	AGPAT4	HGNC:20885	ENSG00000026652	GGUUCCAGGCUGGAGG
hsa_m5C_1632	chr17	7239306	7239307	-	ENST00000320316	C151	m5C	C12	5'-GGGGAGGGGGGCGCCGGACCGGGAGGAGGGGAGGGGG-3'	((...((......))...))................. ( -5.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	37	chr17:7239282-7239318	PHF23	HGNC:28428	ENSG00000040633	GGGGAGGGGGGCGCCGGACCGGGAGGAGGGGAGGGGG
hsa_m5C_1633	chrX	119538725	119538726	-	ENST00000320339	C1795	m5C	C13	5'-GGUGGCCGGGUACGG-3'	.....(((....))) ( -2.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chrX:119538724-119538738	STEEP1	HGNC:26239	ENSG00000018610	GGUGGCCGGGUACGG
hsa_m5C_1634	chr18	76919972	76919973	+	ENST00000320610	C3523	m5C	C8	5'-GGACAAGCAGGCGGAGCUGCAGG-3'	......((((......))))... ( -5.90)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	23	chr18:76919966-76919988	ZNF236	HGNC:13028	ENSG00000130856	GGACAAGCAGGCGGAGCUGCAGG
hsa_m5C_1635	chr11	64853107	64853108	-	ENST00000320631	C2987	m5C	C18	5'-GGCCCAGUGGCCCGGGCCAGUUCAGG-3'	(((((........)))))........ (-11.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr11:64853100-64853125	EHD1	HGNC:3242	ENSG00000110047	GGCCCAGUGGCCCGGGCCAGUUCAGG
hsa_m5C_1636	chr2	190881266	190881267	+	ENST00000320717	C447	m5C	C10	5'-GGGCGGGGGCGGCUGGCCGGCGG-3'	.(((.((.....)).)))..... ( -8.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	23	chr2:190881258-190881280	GLS	HGNC:4331	ENSG00000115419	GGGCGGGGGCGGCUGGCCGGCGG
hsa_m5C_1637	chr2	190881277	190881278	+	ENST00000320717	C458	m5C	C21	5'-GGGCGGGGGCGGCUGGCCGGCGG-3'	.(((.((.....)).)))..... ( -8.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	23	chr2:190881258-190881280	GLS	HGNC:4331	ENSG00000115419	GGGCGGGGGCGGCUGGCCGGCGG
hsa_m5C_1638	chr17	4998049	4998050	+	ENST00000320785	C101	m5C	C17	5'-GGCACCCGGCGAGGGGCGGGGG-3'	....(((.((.....)).))). ( -9.70)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	22	chr17:4998034-4998055	KIF1C	HGNC:6317	ENSG00000129250	GGCACCCGGCGAGGGGCGGGGG
hsa_m5C_1639	chr17	4998035	4998036	+	ENST00000320785	C87	m5C	C3	5'-GGCACCCGGCGAGGGGCGGGGG-3'	....(((.((.....)).))). ( -9.70)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	22	chr17:4998034-4998055	KIF1C	HGNC:6317	ENSG00000129250	GGCACCCGGCGAGGGGCGGGGG
hsa_m5C_1640	chr17	4997966	4997967	+	ENST00000320785	C18	m5C	C4	5'-GGGCGGGCGCCGGCCGCUGG-3'	.((((.((....)))))).. ( -7.90)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	20	chr17:4997964-4997983	KIF1C	HGNC:6317	ENSG00000129250	GGGCGGGCGCCGGCCGCUGG
hsa_m5C_1641	chr17	5023700	5023701	+	ENST00000320785	C3217	m5C	C4	5'-GGGCUCUGGGGGCCGGGGCGGGGG-3'	..(((((((...)))))))..... (-10.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	24	chr17:5023698-5023721	KIF1C	HGNC:6317	ENSG00000129250	GGGCUCUGGGGGCCGGGGCGGGGG
hsa_m5C_1642	chr17	5023709	5023710	+	ENST00000320785	C3226	m5C	C13	5'-GGGCUCUGGGGGCCGGGGCGGGGG-3'	..(((((((...)))))))..... (-10.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	24	chr17:5023698-5023721	KIF1C	HGNC:6317	ENSG00000129250	GGGCUCUGGGGGCCGGGGCGGGGG
hsa_m5C_1643	chr17	5002537	5002538	+	ENST00000320785	C859	m5C	C16	5'-GGGUUCUCUGCGGGUCCGGGAGCACCCCAUCCUGGG-3'	((((.((((.((....)))))).))))......... (-11.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	36	chr17:5002523-5002558	KIF1C	HGNC:6317	ENSG00000129250	GGGUUCUCUGCGGGUCCGGGAGCACCCCAUCCUGGG
hsa_m5C_1644	chr17	5002538	5002539	+	ENST00000320785	C860	m5C	C17	5'-GGGUUCUCUGCGGGUCCGGGAGCACCCCAUCCUGGG-3'	((((.((((.((....)))))).))))......... (-11.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	36	chr17:5002523-5002558	KIF1C	HGNC:6317	ENSG00000129250	GGGUUCUCUGCGGGUCCGGGAGCACCCCAUCCUGGG
hsa_m5C_1645	chr16	28965597	28965598	+	ENST00000320805	C3070	m5C	C9	5'-GGCUGAGGCAGGGG-3'	.((....))..... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	14	chr16:28965590-28965603	NFATC2IP	HGNC:25906	ENSG00000176953	GGCUGAGGCAGGGG
hsa_m5C_1646	chr4	6641160	6641161	+	ENST00000320912	C952	m5C	C3	5'-GGCCGAGGAGAAGGCCAAGG-3'	((((........)))).... ( -8.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr4:6641159-6641178	MRFAP1	HGNC:24549	ENSG00000179010	GGCCGAGGAGAAGGCCAAGG
hsa_m5C_1647	chr4	6641161	6641162	+	ENST00000320912	C953	m5C	C4	5'-GGCCGAGGAGAAGGCCAAGG-3'	((((........)))).... ( -8.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr4:6641159-6641178	MRFAP1	HGNC:24549	ENSG00000179010	GGCCGAGGAGAAGGCCAAGG
hsa_m5C_1648	chr11	117209028	117209029	-	ENST00000320934	C1738	m5C	C19	5'-GGAUGGACCUGGAGAUGUCAGG-3'	.......(((((.....))))) ( -4.10)	loop	mRNA	HeLa	m5C-RIP-seq:(Medium),RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	22	chr11:117209026-117209047	PCSK7	HGNC:8748	ENSG00000160613	GGAUGGACCUGGAGAUGUCAGG
hsa_m5C_1649	chr17	18278017	18278018	-	ENST00000321105	C2700	m5C	C7	5'-GGAGGGCCCCAACCGGGG-3'	......((((....)))) ( -6.00)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	18	chr17:18278007-18278024	TOP3A	HGNC:11992	ENSG00000177302	GGAGGGCCCCAACCGGGG
hsa_m5C_1650	chr17	18278016	18278017	-	ENST00000321105	C2701	m5C	C8	5'-GGAGGGCCCCAACCGGGG-3'	......((((....)))) ( -6.00)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	18	chr17:18278007-18278024	TOP3A	HGNC:11992	ENSG00000177302	GGAGGGCCCCAACCGGGG
hsa_m5C_1651	chr17	18278015	18278016	-	ENST00000321105	C2702	m5C	C9	5'-GGAGGGCCCCAACCGGGG-3'	......((((....)))) ( -6.00)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	18	chr17:18278007-18278024	TOP3A	HGNC:11992	ENSG00000177302	GGAGGGCCCCAACCGGGG
hsa_m5C_1652	chr17	18278014	18278015	-	ENST00000321105	C2703	m5C	C10	5'-GGAGGGCCCCAACCGGGG-3'	......((((....)))) ( -6.00)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	18	chr17:18278007-18278024	TOP3A	HGNC:11992	ENSG00000177302	GGAGGGCCCCAACCGGGG
hsa_m5C_1653	chr1	26946750	26946751	+	ENST00000321265	C1672	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr1:26946746-26946760	NUDC	HGNC:8045	ENSG00000090273	GGAGGCUGAGGCAGG
hsa_m5C_1654	chr1	26946756	26946757	+	ENST00000321265	C1678	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr1:26946746-26946760	NUDC	HGNC:8045	ENSG00000090273	GGAGGCUGAGGCAGG
hsa_m5C_1655	chr5	175529100	175529101	+	ENST00000321442	C3425	m5C	C7	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr5:175529095-175529109	SFXN1	HGNC:16085	ENSG00000164466	GGGAGGCCGAGGCGG
hsa_m5C_1656	chr5	175529101	175529102	+	ENST00000321442	C3426	m5C	C8	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr5:175529095-175529109	SFXN1	HGNC:16085	ENSG00000164466	GGGAGGCCGAGGCGG
hsa_m5C_1657	chr5	175529106	175529107	+	ENST00000321442	C3431	m5C	C13	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	15	chr5:175529095-175529109	SFXN1	HGNC:16085	ENSG00000164466	GGGAGGCCGAGGCGG
hsa_m5C_1658	chr17	17203093	17203094	-	ENST00000321560	C479	m5C	C10	5'-GGCAG^GGAUCCAGGUCCGG-3'	.....((((....)))).. ( -3.30)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr17:17203085-17203098;17205860-17205864	PLD6	HGNC:30447	ENSG00000179598	GGCAGGGAUCCAGGUCCGG
hsa_m5C_1659	chr17	17206113	17206114	-	ENST00000321560	C220	m5C	C6	5'-GGCUCCGGGCGCGGAGCUGG-3'	(((((((....))))))).. (-12.50)	loop	mRNA	Testis,HeLa;293T;Testis	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;31061524;38168991	20	chr17:17206100-17206119	PLD6	HGNC:30447	ENSG00000179598	GGCUCCGGGCGCGGAGCUGG
hsa_m5C_1660	chr17	41818438	41818439	+	ENST00000321562	C670	m5C	C4	5'-GGGCAUGGACCAGGGGCUGCUGGG-3'	.........((((......)))). ( -5.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	24	chr17:41818436-41818459	FKBP10	HGNC:18169	ENSG00000141756	GGGCAUGGACCAGGGGCUGCUGGG
hsa_m5C_1661	chr17	41818445	41818446	+	ENST00000321562	C677	m5C	C11	5'-GGGCAUGGACCAGGGGCUGCUGGG-3'	.........((((......)))). ( -5.90)	bulge	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	24	chr17:41818436-41818459	FKBP10	HGNC:18169	ENSG00000141756	GGGCAUGGACCAGGGGCUGCUGGG
hsa_m5C_1662	chr17	41818451	41818452	+	ENST00000321562	C683	m5C	C17	5'-GGGCAUGGACCAGGGGCUGCUGGG-3'	.........((((......)))). ( -5.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	24	chr17:41818436-41818459	FKBP10	HGNC:18169	ENSG00000141756	GGGCAUGGACCAGGGGCUGCUGGG
hsa_m5C_1663	chr17	75504456	75504457	-	ENST00000321617	C1879	m5C	C9	5'-GGAGAGGACCAGGUGCUGCCAGG-3'	((..((.((...)).)).))... ( -3.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr17:75504443-75504465	CASKIN2	HGNC:18200	ENSG00000177303	GGAGAGGACCAGGUGCUGCCAGG
hsa_m5C_1664	chr17	75502377	75502378	-	ENST00000321617	C3237	m5C	C16	5'-GGCCCAAGGAAGGGGCCACAGG-3'	(((((.......)))))..... (-10.40)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	22	chr17:75502372-75502393	CASKIN2	HGNC:18200	ENSG00000177303	GGCCCAAGGAAGGGGCCACAGG
hsa_m5C_1665	chr17	75502376	75502377	-	ENST00000321617	C3238	m5C	C17	5'-GGCCCAAGGAAGGGGCCACAGG-3'	(((((.......)))))..... (-10.40)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	22	chr17:75502372-75502393	CASKIN2	HGNC:18200	ENSG00000177303	GGCCCAAGGAAGGGGCCACAGG
hsa_m5C_1666	chr6	147204635	147204636	+	ENST00000321680	C220	m5C	C14	5'-GGGAACCGGGAGCCGGAGAUCCAGG-3'	.(((.((((...))))...)))... ( -7.70)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr6:147204623-147204647	STXBP5	HGNC:19665	ENSG00000164506	GGGAACCGGGAGCCGGAGAUCCAGG
hsa_m5C_1667	chr19	10114531	10114532	+	ENST00000321826	C948	m5C	C27	5'-GGCCCUACGUGGGCUACCAGGUGAUGCGGG-3'	..((((((.(((....))).)))....))) ( -9.60)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa,siControl;HeLa	m5C-RIP-seq:(Medium),RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038;31061524	30	chr19:10114506-10114535	P2RY11	HGNC:8540	ENSG00000244165	GGCCCUACGUGGGCUACCAGGUGAUGCGGG
hsa_m5C_1668	chr2	5695385	5695386	+	ENST00000322002	C3003	m5C	C10	5'-GGAUGGGGCCCCAGAUGG-3'	...(((....)))..... ( -1.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	18	chr2:5695377-5695394	SOX11	HGNC:11191	ENSG00000176887	GGAUGGGGCCCCAGAUGG
hsa_m5C_1669	chr2	5695386	5695387	+	ENST00000322002	C3004	m5C	C11	5'-GGAUGGGGCCCCAGAUGG-3'	...(((....)))..... ( -1.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	18	chr2:5695377-5695394	SOX11	HGNC:11191	ENSG00000176887	GGAUGGGGCCCCAGAUGG
hsa_m5C_1670	chr2	5695387	5695388	+	ENST00000322002	C3005	m5C	C12	5'-GGAUGGGGCCCCAGAUGG-3'	...(((....)))..... ( -1.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	18	chr2:5695377-5695394	SOX11	HGNC:11191	ENSG00000176887	GGAUGGGGCCCCAGAUGG
hsa_m5C_1671	chr16	4797165	4797166	-	ENST00000322048	C1220	m5C	C16	5'-GGACAGGGCCAGGCGCAGG-3'	((......))......... ( -0.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	19	chr16:4797163-4797181	ROGDI	HGNC:29478	ENSG00000067836	GGACAGGGCCAGGCGCAGG
hsa_m5C_1672	chr19	45901776	45901777	-	ENST00000322217	C93	m5C	C13	5'-GGCGUCGGGGGGCGCCAUGGCCUCGGCGG-3'	((((((....))))))...((....)).. (-14.10)	loop	mRNA	HeLa,T24;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa,siControl;HeLa	m5C-RIP-seq:(Medium),RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	29	chr19:45901761-45901789	MYPOP	HGNC:20178	ENSG00000176182	GGCGUCGGGGGGCGCCAUGGCCUCGGCGG
hsa_m5C_1673	chr19	45901774	45901775	-	ENST00000322217	C95	m5C	C15	5'-GGCGUCGGGGGGCGCCAUGGCCUCGGCGG-3'	((((((....))))))...((....)).. (-14.10)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	29	chr19:45901761-45901789	MYPOP	HGNC:20178	ENSG00000176182	GGCGUCGGGGGGCGCCAUGGCCUCGGCGG
hsa_m5C_1674	chr19	45901773	45901774	-	ENST00000322217	C96	m5C	C16	5'-GGCGUCGGGGGGCGCCAUGGCCUCGGCGG-3'	((((((....))))))...((....)).. (-14.10)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	29	chr19:45901761-45901789	MYPOP	HGNC:20178	ENSG00000176182	GGCGUCGGGGGGCGCCAUGGCCUCGGCGG
hsa_m5C_1675	chrX	154515928	154515929	-	ENST00000322269	C314	m5C	C3	5'-GGCCGGGCGGCUGG-3'	((((....)))).. ( -4.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	14	chrX:154515918-154515931	FAM3A	HGNC:13749	ENSG00000071889	GGCCGGGCGGCUGG
hsa_m5C_1676	chrX	154515927	154515928	-	ENST00000322269	C315	m5C	C4	5'-GGCCGGGCGGCUGG-3'	((((....)))).. ( -4.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	14	chrX:154515918-154515931	FAM3A	HGNC:13749	ENSG00000071889	GGCCGGGCGGCUGG
hsa_m5C_1677	chrX	154516172	154516173	-	ENST00000322269	C70	m5C	C9	5'-GGGCGGAGCGGGUCGGCGGGCCUGACAGGG-3'	........((((((....))))))...... ( -8.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	30	chrX:154516152-154516181	FAM3A	HGNC:13749	ENSG00000071889	GGGCGGAGCGGGUCGGCGGGCCUGACAGGG
hsa_m5C_1678	chrX	154516167	154516168	-	ENST00000322269	C75	m5C	C14	5'-GGGCGGAGCGGGUCGGCGGGCCUGACAGGG-3'	........((((((....))))))...... ( -8.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	30	chrX:154516152-154516181	FAM3A	HGNC:13749	ENSG00000071889	GGGCGGAGCGGGUCGGCGGGCCUGACAGGG
hsa_m5C_1679	chrX	154515971	154515972	-	ENST00000322269	C271	m5C	C22	5'-GGUUCCUGAGGCCCCUCCUGGCCAGGCAGG-3'	....((((.((((......))))...)))) (-10.70)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	30	chrX:154515964-154515993	FAM3A	HGNC:13749	ENSG00000071889	GGUUCCUGAGGCCCCUCCUGGCCAGGCAGG
hsa_m5C_1680	chrX	154515970	154515971	-	ENST00000322269	C272	m5C	C23	5'-GGUUCCUGAGGCCCCUCCUGGCCAGGCAGG-3'	....((((.((((......))))...)))) (-10.70)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	30	chrX:154515964-154515993	FAM3A	HGNC:13749	ENSG00000071889	GGUUCCUGAGGCCCCUCCUGGCCAGGCAGG
hsa_m5C_1681	chrX	154515966	154515967	-	ENST00000322269	C276	m5C	C27	5'-GGUUCCUGAGGCCCCUCCUGGCCAGGCAGG-3'	....((((.((((......))))...)))) (-10.70)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	30	chrX:154515964-154515993	FAM3A	HGNC:13749	ENSG00000071889	GGUUCCUGAGGCCCCUCCUGGCCAGGCAGG
hsa_m5C_1682	chr19	4054248	4054249	-	ENST00000322357	C1217	m5C	C4	5'-GGGCCGGGCGGGGGCCGCGGCGGG-3'	..(((((((....))).))))... (-13.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMVar database	28418038	24	chr19:4054229-4054252	ZBTB7A	HGNC:18078	ENSG00000178951	GGGCCGGGCGGGGGCCGCGGCGGG
hsa_m5C_1683	chr19	4054247	4054248	-	ENST00000322357	C1218	m5C	C5	5'-GGGCCGGGCGGGGGCCGCGGCGGG-3'	..(((((((....))).))))... (-13.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMVar database	28418038	24	chr19:4054229-4054252	ZBTB7A	HGNC:18078	ENSG00000178951	GGGCCGGGCGGGGGCCGCGGCGGG
hsa_m5C_1684	chr11	66058900	66058901	+	ENST00000322535	C1059	m5C	C26	5'-GGGUGCGAGGGGUGUCCUCUGAGAGCUCUGGGGACCGGG-3'	.............((((((.((....)).)))))).... ( -9.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	39	chr11:66058876-66058914	SF3B2	HGNC:10769	ENSG00000087365	GGGUGCGAGGGGUGUCCUCUGAGAGCUCUGGGGACCGGG
hsa_m5C_1685	chr11	66058909	66058910	+	ENST00000322535	C1068	m5C	C35	5'-GGGUGCGAGGGGUGUCCUCUGAGAGCUCUGGGGACCGGG-3'	.............((((((.((....)).)))))).... ( -9.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	39	chr11:66058876-66058914	SF3B2	HGNC:10769	ENSG00000087365	GGGUGCGAGGGGUGUCCUCUGAGAGCUCUGGGGACCGGG
hsa_m5C_1686	chr11	66058910	66058911	+	ENST00000322535	C1069	m5C	C36	5'-GGGUGCGAGGGGUGUCCUCUGAGAGCUCUGGGGACCGGG-3'	.............((((((.((....)).)))))).... ( -9.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	39	chr11:66058876-66058914	SF3B2	HGNC:10769	ENSG00000087365	GGGUGCGAGGGGUGUCCUCUGAGAGCUCUGGGGACCGGG
hsa_m5C_1687	chr12	55842871	55842872	-	ENST00000322569	C65	m5C	C4	5'-GGUCAGAGGCACGGACAGCCUCUGG-3'	...(((((((.......))))))). (-12.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr12:55842851-55842875	MMP19	HGNC:7165	ENSG00000123342	GGUCAGAGGCACGGACAGCCUCUGG
hsa_m5C_1688	chr2	231455570	231455571	-	ENST00000322723	C2017	m5C	C6	5'-GGAGGCCAUGGAAGACGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	18	chr2:231455559-231455576	NCL	HGNC:7667	ENSG00000115053	GGAGGCCAUGGAAGACGG
hsa_m5C_1689	chr2	231455569	231455570	-	ENST00000322723	C2018	m5C	C7	5'-GGAGGCCAUGGAAGACGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	18	chr2:231455559-231455576	NCL	HGNC:7667	ENSG00000115053	GGAGGCCAUGGAAGACGG
hsa_m5C_1690	chr2	231455560	231455561	-	ENST00000322723	C2027	m5C	C16	5'-GGAGGCCAUGGAAGACGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	18	chr2:231455559-231455576	NCL	HGNC:7667	ENSG00000115053	GGAGGCCAUGGAAGACGG
hsa_m5C_1691	chr8	143925354	143925355	-	ENST00000322810	C5155	m5C	C9	5'-GGCCGAGGCCGAGGCGG-3'	.(((........))).. ( -5.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	17	chr8:143925347-143925363	PLEC	HGNC:9069	ENSG00000178209	GGCCGAGGCCGAGGCGG
hsa_m5C_1692	chr17	76136472	76136473	-	ENST00000322957	C2447	m5C	C6	5'-GGGGGCGUGGGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	12	chr17:76136467-76136478	FOXJ1	HGNC:3816	ENSG00000129654	GGGGGCGUGGGG
hsa_m5C_1693	chr17	18266412	18266413	+	ENST00000323019	C3097	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Muscle	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr17:18266408-18266422	MIEF2	HGNC:17920	ENSG00000177427	GGAGGCUGAGGCAGG
hsa_m5C_1694	chr22	37817088	37817089	+	ENST00000323205	C1569	m5C	C6	5'-GGAGGCCAAGGUAGG-3'	NA	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr22:37817084-37817098	GCAT	HGNC:4188	ENSG00000100116	GGAGGCCAAGGUAGG
hsa_m5C_1695	chr22	37817089	37817090	+	ENST00000323205	C1570	m5C	C7	5'-GGAGGCCAAGGUAGG-3'	NA	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr22:37817084-37817098	GCAT	HGNC:4188	ENSG00000100116	GGAGGCCAAGGUAGG
hsa_m5C_1696	chr22	37817045	37817046	+	ENST00000323205	C1526	m5C	C4	5'-GGCCGGGCACGGUGG-3'	.((((....)))).. ( -5.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr22:37817043-37817057	GCAT	HGNC:4188	ENSG00000100116	GGCCGGGCACGGUGG
hsa_m5C_1697	chr5	177456126	177456127	+	ENST00000323249	C1302	m5C	C5	5'-GGGGCGCCCGGCGCCCCGGGCCCCACCGG-3'	.(((.((((((....)))))))))..... (-18.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr5:177456123-177456151	PRR7	HGNC:28130	ENSG00000131188	GGGGCGCCCGGCGCCCCGGGCCCCACCGG
hsa_m5C_1698	chr5	177456135	177456136	+	ENST00000323249	C1311	m5C	C14	5'-GGGGCGCCCGGCGCCCCGGGCCCCACCGG-3'	.(((.((((((....)))))))))..... (-18.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr5:177456123-177456151	PRR7	HGNC:28130	ENSG00000131188	GGGGCGCCCGGCGCCCCGGGCCCCACCGG
hsa_m5C_1699	chr5	177456137	177456138	+	ENST00000323249	C1313	m5C	C16	5'-GGGGCGCCCGGCGCCCCGGGCCCCACCGG-3'	.(((.((((((....)))))))))..... (-18.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr5:177456123-177456151	PRR7	HGNC:28130	ENSG00000131188	GGGGCGCCCGGCGCCCCGGGCCCCACCGG
hsa_m5C_1700	chr3	153162512	153162513	+	ENST00000323534	C288	m5C	C3	5'-GGCCGGCCCGGCGCCCGG-3'	.((((...))))...... ( -5.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr3:153162511-153162528	RAP2B	HGNC:9862	ENSG00000181467	GGCCGGCCCGGCGCCCGG
hsa_m5C_1701	chr6	53078869	53078870	+	ENST00000323557	C765	m5C	C6	5'-GGUCUCCAGAUGGUGAUGGCGUUGG-3'	.(((.((....)).)))........ ( -3.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr6:53078865-53078889	FBXO9	HGNC:13588	ENSG00000112146	GGUCUCCAGAUGGUGAUGGCGUUGG
hsa_m5C_1702	chr8	144111778	144111779	+	ENST00000323662	C2647	m5C	C13	5'-GGCUCUGGCCUGCUG^GGCAUGCAGUCUGG-3'	((((.((.((....)).))...))))... ( -7.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	29	chr8:144111767-144111781;144111887-144111900	WDR97	HGNC:26959	ENSG00000179698	GGCUCUGGCCUGCUGGGCAUGCAGUCUGG
hsa_m5C_1703	chr8	144111478	144111479	+	ENST00000323662	C2492	m5C	C6	5'-GGUGCCGAAGGAG^GACUUGG-3'	(((.((......)))))... ( -2.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr8:144111474-144111486;144111632-144111638	WDR97	HGNC:26959	ENSG00000179698	GGUGCCGAAGGAGGACUUGG
hsa_m5C_1704	chr19	29715209	29715210	-	ENST00000323670	C52	m5C	C13	5'-GGGGCUGGGGAGCUGGGCGGGGAGCCCGGGG-3'	..((((....))))((((.....)))).... (-11.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;RNAfold:(High)	m6A-Atlas database	28418038	31	chr19:29715192-29715222	C19orf12	HGNC:25443	ENSG00000131943	GGGGCUGGGGAGCUGGGCGGGGAGCCCGGGG
hsa_m5C_1705	chr15	74195330	74195331	-	ENST00000323940	C814	m5C	C14	5'-GGUCCAGGUCUGGCAGAGG-3'	...(((....)))...... ( -0.80)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	m5C-RIP-seq:(Medium)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	31061524	19	chr15:74195326-74195344	STRA6	HGNC:30650	ENSG00000137868	GGUCCAGGUCUGGCAGAGG
hsa_m5C_1706	chr17	4956596	4956597	+	ENST00000323997	C1224	m5C	C3	5'-GGCUGGGGGGUGAUGG-3'	.(((....)))..... ( -0.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	16	chr17:4956595-4956610	ENO3	HGNC:3354	ENSG00000108515	GGCUGGGGGGUGAUGG
hsa_m5C_1707	chr8	492555	492556	-	ENST00000324079	C478	m5C	C4	5'-GGUCAGGCUGGGAGG-3'	NA	loop	mRNA	MRC-5;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	15	chr8:492545-492559	TDRP	HGNC:26951	ENSG00000180190	GGUCAGGCUGGGAGG
hsa_m5C_1708	chr8	492551	492552	-	ENST00000324079	C482	m5C	C8	5'-GGUCAGGCUGGGAGG-3'	NA	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr8:492545-492559	TDRP	HGNC:26951	ENSG00000180190	GGUCAGGCUGGGAGG
hsa_m5C_1709	chr3	129606034	129606035	-	ENST00000324093	C642	m5C	C6	5'-GGGCGCGGGGGGCAGCCGCCUGCUCGUGGG-3'	(((((.((.((....)).)))))))..... (-13.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	30	chr3:129606011-129606040	PLXND1	HGNC:9107	ENSG00000004399	GGGCGCGGGGGGCAGCCGCCUGCUCGUGGG
hsa_m5C_1710	chr3	129606027	129606028	-	ENST00000324093	C649	m5C	C13	5'-GGGCGCGGGGGGCAGCCGCCUGCUCGUGGG-3'	(((((.((.((....)).)))))))..... (-13.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	30	chr3:129606011-129606040	PLXND1	HGNC:9107	ENSG00000004399	GGGCGCGGGGGGCAGCCGCCUGCUCGUGGG
hsa_m5C_1711	chr3	129556183	129556184	-	ENST00000324093	C5943	m5C	C11	5'-GGGGCGGGGGCAGGAGGAGGGG-3'	...((....))........... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	22	chr3:129556173-129556194	PLXND1	HGNC:9107	ENSG00000004399	GGGGCGGGGGCAGGAGGAGGGG
hsa_m5C_1712	chr2	101697794	101697795	+	ENST00000324219	C89	m5C	C24	5'-GGCGCGGGCGCCGGGGCCUGAGGCGGCGGGCGACGCCCGGGGG-3'	((((....))))....((((.((((........)))))))).. (-20.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	43	chr2:101697772-101697814	MAP4K4	HGNC:6866	ENSG00000071054	GGCGCGGGCGCCGGGGCCUGAGGCGGCGGGCGACGCCCGGGGG
hsa_m5C_1713	chr2	101697797	101697798	+	ENST00000324219	C92	m5C	C27	5'-GGCGCGGGCGCCGGGGCCUGAGGCGGCGGGCGACGCCCGGGGG-3'	((((....))))....((((.((((........)))))))).. (-20.10)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	43	chr2:101697772-101697814	MAP4K4	HGNC:6866	ENSG00000071054	GGCGCGGGCGCCGGGGCCUGAGGCGGCGGGCGACGCCCGGGGG
hsa_m5C_1714	chr2	101856054	101856055	+	ENST00000324219	C1686	m5C	C6	5'-GGCGUCUAGAGGAGUUGGAGAGAAGG-3'	....(((((.....)))))....... ( -1.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr2:101856050-101856075	MAP4K4	HGNC:6866	ENSG00000071054	GGCGUCUAGAGGAGUUGGAGAGAAGG
hsa_m5C_1715	chr2	101825332	101825333	+	ENST00000324219	C695	m5C	C17	5'-GG^CUUGUUAUGGAGUUCUGUGGGGCUGGG-3'	(((((..(((((....))))))))))... ( -4.60)	bulge	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	29	chr2:101824052-101824053;101825319-101825345	MAP4K4	HGNC:6866	ENSG00000071054	GGCUUGUUAUGGAGUUCUGUGGGGCUGGG
hsa_m5C_1716	chr11	117179095	117179096	+	ENST00000324225	C354	m5C	C21	5'-GGGGACCCUGGGAGCCUCUUCGGGGCUCUUGGG-3'	......((((((((((((...)))))))))))) (-17.40)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;HeLa,siControl;HeLa	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	33	chr11:117179076-117179108	SIDT2	HGNC:24272	ENSG00000149577	GGGGACCCUGGGAGCCUCUUCGGGGCUCUUGGG
hsa_m5C_1717	chr6	5368670	5368671	+	ENST00000324331	C437	m5C	C12	5'-GGCCUGGGGAUCGAGG-3'	..(((........))) ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr6:5368660-5368675	FARS2	HGNC:21062	ENSG00000145982	GGCCUGGGGAUCGAGG
hsa_m5C_1718	chr7	76482559	76482560	+	ENST00000324432	C831	m5C	C3	5'-GGCCGAGGUGUCGUCUGGGAGUGG-3'	..((.(((.....))).))..... ( -4.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr7:76482558-76482581	DTX2	HGNC:15973	ENSG00000091073	GGCCGAGGUGUCGUCUGGGAGUGG
hsa_m5C_1719	chr7	76480682	76480683	+	ENST00000324432	C684	m5C	C25	5'-GGGCCAACGUUUUGGGCUUGGGAGCCUGG-3'	.............(((((....))))).. ( -5.80)	bulge	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	29	chr7:76480659-76480687	DTX2	HGNC:15973	ENSG00000091073	GGGCCAACGUUUUGGGCUUGGGAGCCUGG
hsa_m5C_1720	chr7	76480683	76480684	+	ENST00000324432	C685	m5C	C26	5'-GGGCCAACGUUUUGGGCUUGGGAGCCUGG-3'	.............(((((....))))).. ( -5.80)	bulge	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	29	chr7:76480659-76480687	DTX2	HGNC:15973	ENSG00000091073	GGGCCAACGUUUUGGGCUUGGGAGCCUGG
hsa_m5C_1721	chr7	76482648	76482649	+	ENST00000324432	C920	m5C	C6	5'-GGUGGCCAGGGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	12	chr7:76482644-76482655	DTX2	HGNC:15973	ENSG00000091073	GGUGGCCAGGGG
hsa_m5C_1722	chr7	76482649	76482650	+	ENST00000324432	C921	m5C	C7	5'-GGUGGCCAGGGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	12	chr7:76482644-76482655	DTX2	HGNC:15973	ENSG00000091073	GGUGGCCAGGGG
hsa_m5C_1723	chr16	28937799	28937800	+	ENST00000324662	C1494	m5C	C15	5'-GGGUCAGCCUGGGACCCCAGCCGGGAAGCAACCUCCCUGG^CAGGG-3'	(((((.......)))))..((((((.((....)).)))))).... (-18.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	45	chr16:28937786-28937825;28938673-28938677	CD19	HGNC:1633	ENSG00000177455	GGGUCAGCCUGGGACCCCAGCCGGGAAGCAACCUCCCUGGCAGGG
hsa_m5C_1724	chr16	28937800	28937801	+	ENST00000324662	C1495	m5C	C16	5'-GGGUCAGCCUGGGACCCCAGCCGGGAAGCAACCUCCCUGG^CAGGG-3'	(((((.......)))))..((((((.((....)).)))))).... (-18.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	45	chr16:28937786-28937825;28938673-28938677	CD19	HGNC:1633	ENSG00000177455	GGGUCAGCCUGGGACCCCAGCCGGGAAGCAACCUCCCUGGCAGGG
hsa_m5C_1725	chr16	28937801	28937802	+	ENST00000324662	C1496	m5C	C17	5'-GGGUCAGCCUGGGACCCCAGCCGGGAAGCAACCUCCCUGG^CAGGG-3'	(((((.......)))))..((((((.((....)).)))))).... (-18.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	45	chr16:28937786-28937825;28938673-28938677	CD19	HGNC:1633	ENSG00000177455	GGGUCAGCCUGGGACCCCAGCCGGGAAGCAACCUCCCUGGCAGGG
hsa_m5C_1726	chr16	28937802	28937803	+	ENST00000324662	C1497	m5C	C18	5'-GGGUCAGCCUGGGACCCCAGCCGGGAAGCAACCUCCCUGG^CAGGG-3'	(((((.......)))))..((((((.((....)).)))))).... (-18.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	45	chr16:28937786-28937825;28938673-28938677	CD19	HGNC:1633	ENSG00000177455	GGGUCAGCCUGGGACCCCAGCCGGGAAGCAACCUCCCUGGCAGGG
hsa_m5C_1727	chr14	50634466	50634467	-	ENST00000324679	C2207	m5C	C6	5'-GGAGGCUGAGGUCAGAGG-3'	.....(((....)))... ( -1.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr14:50634455-50634472	SAV1	HGNC:17795	ENSG00000151748	GGAGGCUGAGGUCAGAGG
hsa_m5C_1728	chr2	101387191	101387192	-	ENST00000324768	C312	m5C	C4	5'-GGGCGGGCGCCGCCCGGGCCAGGCCG-3'	((((((...)))))).(((...))). (-14.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr2:101387170-101387195	CREG2	HGNC:14272	ENSG00000175874	GGGCGGGCGCCGCCCGGGCCAGGCCG
hsa_m5C_1729	chr2	101387182	101387183	-	ENST00000324768	C321	m5C	C13	5'-GGGCGGGCGCCGCCCGGGCCAGGCCG-3'	((((((...)))))).(((...))). (-14.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr2:101387170-101387195	CREG2	HGNC:14272	ENSG00000175874	GGGCGGGCGCCGCCCGGGCCAGGCCG
hsa_m5C_1730	chr2	101387181	101387182	-	ENST00000324768	C322	m5C	C14	5'-GGGCGGGCGCCGCCCGGGCCAGGCCG-3'	((((((...)))))).(((...))). (-14.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr2:101387170-101387195	CREG2	HGNC:14272	ENSG00000175874	GGGCGGGCGCCGCCCGGGCCAGGCCG
hsa_m5C_1731	chr2	101387180	101387181	-	ENST00000324768	C323	m5C	C15	5'-GGGCGGGCGCCGCCCGGGCCAGGCCG-3'	((((((...)))))).(((...))). (-14.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr2:101387170-101387195	CREG2	HGNC:14272	ENSG00000175874	GGGCGGGCGCCGCCCGGGCCAGGCCG
hsa_m5C_1732	chr2	101387175	101387176	-	ENST00000324768	C328	m5C	C20	5'-GGGCGGGCGCCGCCCGGGCCAGGCCG-3'	((((((...)))))).(((...))). (-14.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr2:101387170-101387195	CREG2	HGNC:14272	ENSG00000175874	GGGCGGGCGCCGCCCGGGCCAGGCCG
hsa_m5C_1733	chr6	30889227	30889228	+	ENST00000324771	C763	m5C	C10	5'-GGGAUGGGGCCUGG-3'	(((......))).. ( -1.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	14	chr6:30889219-30889232	DDR1	HGNC:2730	ENSG00000204580	GGGAUGGGGCCUGG
hsa_m5C_1734	chr12	121274482	121274483	-	ENST00000324774	C873	m5C	C7	5'-GGGCCGCCCCCCAGGAUGAGCUGGGGGGCAGGGG-3'	...(((((((((((......))))))))).)).. (-24.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	34	chr12:121274456-121274489	CAMKK2	HGNC:1470	ENSG00000110931	GGGCCGCCCCCCAGGAUGAGCUGGGGGGCAGGGG
hsa_m5C_1735	chr12	121274481	121274482	-	ENST00000324774	C874	m5C	C8	5'-GGGCCGCCCCCCAGGAUGAGCUGGGGGGCAGGGG-3'	...(((((((((((......))))))))).)).. (-24.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	34	chr12:121274456-121274489	CAMKK2	HGNC:1470	ENSG00000110931	GGGCCGCCCCCCAGGAUGAGCUGGGGGGCAGGGG
hsa_m5C_1736	chr12	121274480	121274481	-	ENST00000324774	C875	m5C	C9	5'-GGGCCGCCCCCCAGGAUGAGCUGGGGGGCAGGGG-3'	...(((((((((((......))))))))).)).. (-24.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	34	chr12:121274456-121274489	CAMKK2	HGNC:1470	ENSG00000110931	GGGCCGCCCCCCAGGAUGAGCUGGGGGGCAGGGG
hsa_m5C_1737	chr12	121274479	121274480	-	ENST00000324774	C876	m5C	C10	5'-GGGCCGCCCCCCAGGAUGAGCUGGGGGGCAGGGG-3'	...(((((((((((......))))))))).)).. (-24.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	34	chr12:121274456-121274489	CAMKK2	HGNC:1470	ENSG00000110931	GGGCCGCCCCCCAGGAUGAGCUGGGGGGCAGGGG
hsa_m5C_1738	chr12	121274478	121274479	-	ENST00000324774	C877	m5C	C11	5'-GGGCCGCCCCCCAGGAUGAGCUGGGGGGCAGGGG-3'	...(((((((((((......))))))))).)).. (-24.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	34	chr12:121274456-121274489	CAMKK2	HGNC:1470	ENSG00000110931	GGGCCGCCCCCCAGGAUGAGCUGGGGGGCAGGGG
hsa_m5C_1739	chr12	121274477	121274478	-	ENST00000324774	C878	m5C	C12	5'-GGGCCGCCCCCCAGGAUGAGCUGGGGGGCAGGGG-3'	...(((((((((((......))))))))).)).. (-24.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	34	chr12:121274456-121274489	CAMKK2	HGNC:1470	ENSG00000110931	GGGCCGCCCCCCAGGAUGAGCUGGGGGGCAGGGG
hsa_m5C_1740	chr12	121274460	121274461	-	ENST00000324774	C895	m5C	C29	5'-GGGCCGCCCCCCAGGAUGAGCUGGGGGGCAGGGG-3'	...(((((((((((......))))))))).)).. (-24.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	34	chr12:121274456-121274489	CAMKK2	HGNC:1470	ENSG00000110931	GGGCCGCCCCCCAGGAUGAGCUGGGGGGCAGGGG
hsa_m5C_1741	chr12	32755837	32755838	-	ENST00000324868	C60	m5C	C6	5'-GGGGCCGGUGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	11	chr12:32755833-32755843	YARS2	HGNC:24249	ENSG00000139131	GGGGCCGGUGG
hsa_m5C_1742	chr8	17923007	17923008	+	ENST00000325083	C21	m5C	C3	5'-GGCGGUGGCUGCGG-3'	.((((...)))).. ( -3.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr8:17923006-17923019	PCM1	HGNC:8727	ENSG00000078674	GGCGGUGGCUGCGG
hsa_m5C_1743	chr8	17923013	17923014	+	ENST00000325083	C27	m5C	C9	5'-GGCGGUGGCUGCGG-3'	.((((...)))).. ( -3.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr8:17923006-17923019	PCM1	HGNC:8727	ENSG00000078674	GGCGGUGGCUGCGG
hsa_m5C_1744	chr5	43298700	43298701	-	ENST00000325110	C391	m5C	C3	5'-GGCGGCUGGAAGUUGG-3'	..(((((...))))). ( -2.00)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr5:43298688-43298703	HMGCS1	HGNC:5007	ENSG00000112972	GGCGGCUGGAAGUUGG
hsa_m5C_1745	chr22	39512265	39512266	+	ENST00000325301	C844	m5C	C4	5'-GGCCAGGAAGGGCCAGG-3'	((((......))))... ( -7.70)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr22:39512263-39512279	MIEF1	HGNC:25979	ENSG00000100335	GGCCAGGAAGGGCCAGG
hsa_m5C_1746	chr19	2444496	2444497	-	ENST00000325327	C334	m5C	C15	5'-GGAGCUGGCCGAUGCCCGGAGAGUCCUGG-3'	(((.((..(((.....)))..)))))... ( -8.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr19:2444483-2444511	LMNB2	HGNC:6638	ENSG00000176619	GGAGCUGGCCGAUGCCCGGAGAGUCCUGG
hsa_m5C_1747	chr19	2444494	2444495	-	ENST00000325327	C336	m5C	C17	5'-GGAGCUGGCCGAUGCCCGGAGAGUCCUGG-3'	(((.((..(((.....)))..)))))... ( -8.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr19:2444483-2444511	LMNB2	HGNC:6638	ENSG00000176619	GGAGCUGGCCGAUGCCCGGAGAGUCCUGG
hsa_m5C_1748	chr19	2444485	2444486	-	ENST00000325327	C345	m5C	C26	5'-GGAGCUGGCCGAUGCCCGGAGAGUCCUGG-3'	(((.((..(((.....)))..)))))... ( -8.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr19:2444483-2444511	LMNB2	HGNC:6638	ENSG00000176619	GGAGCUGGCCGAUGCCCGGAGAGUCCUGG
hsa_m5C_1749	chr19	2444417	2444418	-	ENST00000325327	C413	m5C	C24	5'-GGGAAGCUGAGGGCAGAGUUGGACGAGG-3'	....((((........))))........ ( -1.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	28	chr19:2444414-2444441	LMNB2	HGNC:6638	ENSG00000176619	GGGAAGCUGAGGGCAGAGUUGGACGAGG
hsa_m5C_1750	chr17	3726591	3726592	+	ENST00000325418	C2690	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr17:3726587-3726601	HASPIN	HGNC:19682	ENSG00000177602	GGAGGCUGAGGCAGG
hsa_m5C_1751	chr11	67455664	67455665	+	ENST00000325656	C312	m5C	C14	5'-GGAGAGGGGCCGGCGGG-3'	((.......))...... ( -0.30)	loop	mRNA	HeLa,With in vitro transcribed m5C spike-ins;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	m5C-RIP-seq:(Medium);UBS-seq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	38168991;m6A-Atlas database;RMVar database	31061524;38168991	17	chr11:67455652-67455668	CABP4	HGNC:1386	ENSG00000175544	GGAGAGGGGCCGGCGGG
hsa_m5C_1752	chr1	35434196	35434197	-	ENST00000325722	C4072	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	lung	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr1:35434194-35434208	KIAA0319L	HGNC:30071	ENSG00000142687	GGAGGCUGAGGCAGG
hsa_m5C_1753	chr17	59860133	59860134	-	ENST00000325752	C1836	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr17:59860125-59860139	TUBD1	HGNC:16811	ENSG00000108423	GGAGGCUGAGGCAGG
hsa_m5C_1754	chr3	101849690	101849691	+	ENST00000326172	C178	m5C	C21	5'-GGGCUGCGGGACGCGGCGGGCGG-3'	..((((((...))))))...... ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	23	chr3:101849671-101849693	NFKBIZ	HGNC:29805	ENSG00000144802	GGGCUGCGGGACGCGGCGGGCGG
hsa_m5C_1755	chr19	39532681	39532682	-	ENST00000326282	C171	m5C	C23	5'-GGGGGCAGUCGGCGGCGGGGUUCGGGUGCAGGAGGCUCGGG-3'	..((((..((.(((.((.....))..))).))..))))... ( -9.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	41	chr19:39532664-39532704	EID2B	HGNC:26796	ENSG00000176401	GGGGGCAGUCGGCGGCGGGGUUCGGGUGCAGGAGGCUCGGG
hsa_m5C_1756	chr19	39532621	39532622	-	ENST00000326282	C231	m5C	C18	5'-GGUCCAUGGCGCGGAUGCCGG-3'	.......(((......))).. ( -4.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr19:39532619-39532639	EID2B	HGNC:26796	ENSG00000176401	GGUCCAUGGCGCGGAUGCCGG
hsa_m5C_1757	chr3	160226415	160226416	+	ENST00000326474	C995	m5C	C30	5'-GGGAUCGGCGGCUGGUGCAGGGCUGGGGGCUGCGGG-3'	....((.((((((...((...))....)))))).)) (-11.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	36	chr3:160226387-160226422	C3orf80	HGNC:40048	ENSG00000180044	GGGAUCGGCGGCUGGUGCAGGGCUGGGGGCUGCGGG
hsa_m5C_1758	chr12	108783573	108783574	-	ENST00000326495	C7651	m5C	C14	5'-GGUGCUGGGGCCCCGG-3'	((.((....)).)).. ( -3.20)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	16	chr12:108783572-108783587	SSH1	HGNC:30579	ENSG00000084112	GGUGCUGGGGCCCCGG
hsa_m5C_1759	chr15	64678229	64678230	+	ENST00000326648	C3905	m5C	C14	5'-GGAGGAAAGGAGUCGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	16	chr15:64678217-64678232	ZNF609	HGNC:29003	ENSG00000180357	GGAGGAAAGGAGUCGG
hsa_m5C_1760	chr1	16992393	16992394	-	ENST00000326735	C2044	m5C	C16	5'-GGCAAUG^GAGGAGCCCCCGG-3'	(((.........)))..... ( -2.60)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr1:16992390-16992402;16992486-16992492	ATP13A2	HGNC:30213	ENSG00000159363	GGCAAUGGAGGAGCCCCCGG
hsa_m5C_1761	chr1	16992391	16992392	-	ENST00000326735	C2046	m5C	C18	5'-GGCAAUG^GAGGAGCCCCCGG-3'	(((.........)))..... ( -2.60)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	20	chr1:16992390-16992402;16992486-16992492	ATP13A2	HGNC:30213	ENSG00000159363	GGCAAUGGAGGAGCCCCCGG
hsa_m5C_1762	chr1	17011787	17011788	-	ENST00000326735	C141	m5C	C7	5'-GGGGCCCAGGCCGAGG-3'	..(((....))).... ( -4.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr1:17011779-17011794	ATP13A2	HGNC:30213	ENSG00000159363	GGGGCCCAGGCCGAGG
hsa_m5C_1763	chr3	98901669	98901670	-	ENST00000326840	C26	m5C	C5	5'-GGAGCCGCGGGUGAGCGCGGCGAGCGG-3'	...((((((......))))))...... (-13.10)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr3:98901648-98901674	DCBLD2	HGNC:24627	ENSG00000057019	GGAGCCGCGGGUGAGCGCGGCGAGCGG
hsa_m5C_1764	chr1	944400	944401	-	ENST00000327044	C2559	m5C	C9	5'-GGGGAGGCCUGCAGG-3'	(((....)))..... ( -2.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr1:944395-944409	NOC2L	HGNC:24517	ENSG00000188976	GGGGAGGCCUGCAGG
hsa_m5C_1765	chr3	196810648	196810649	+	ENST00000327134	C1091	m5C	C4	5'-GGACAAGG^GGCUUCUGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	17	chr3:196810646-196810653;196812219-196812227	PAK2	HGNC:8591	ENSG00000180370	GGACAAGGGGCUUCUGG
hsa_m5C_1766	chr2	74147879	74147880	-	ENST00000327428	C33	m5C	C20	5'-GGGCGGCGGGUCACGUCGGCCGGG-3'	((.(((((.....))))).))... (-12.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	24	chr2:74147876-74147899	BOLA3	HGNC:24415	ENSG00000163170	GGGCGGCGGGUCACGUCGGCCGGG
hsa_m5C_1767	chr2	74147878	74147879	-	ENST00000327428	C34	m5C	C21	5'-GGGCGGCGGGUCACGUCGGCCGGG-3'	((.(((((.....))))).))... (-12.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	24	chr2:74147876-74147899	BOLA3	HGNC:24415	ENSG00000163170	GGGCGGCGGGUCACGUCGGCCGGG
hsa_m5C_1768	chr17	76265563	76265564	+	ENST00000327490	C217	m5C	C3	5'-GGCCGCGGGCUGCGCGGCCGACCAGG-3'	(((((((.....)))))))....... (-16.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	26	chr17:76265562-76265587	UBALD2	HGNC:28438	ENSG00000185262	GGCCGCGGGCUGCGCGGCCGACCAGG
hsa_m5C_1769	chr17	76265564	76265565	+	ENST00000327490	C218	m5C	C4	5'-GGCCGCGGGCUGCGCGGCCGACCAGG-3'	(((((((.....)))))))....... (-16.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	26	chr17:76265562-76265587	UBALD2	HGNC:28438	ENSG00000185262	GGCCGCGGGCUGCGCGGCCGACCAGG
hsa_m5C_1770	chr17	76265566	76265567	+	ENST00000327490	C220	m5C	C6	5'-GGCCGCGGGCUGCGCGGCCGACCAGG-3'	(((((((.....)))))))....... (-16.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	26	chr17:76265562-76265587	UBALD2	HGNC:28438	ENSG00000185262	GGCCGCGGGCUGCGCGGCCGACCAGG
hsa_m5C_1771	chr17	76265575	76265576	+	ENST00000327490	C229	m5C	C15	5'-GGCCGCGGGCUGCGCGGCCGACCAGG-3'	(((((((.....)))))))....... (-16.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	26	chr17:76265562-76265587	UBALD2	HGNC:28438	ENSG00000185262	GGCCGCGGGCUGCGCGGCCGACCAGG
hsa_m5C_1772	chr17	76265578	76265579	+	ENST00000327490	C232	m5C	C18	5'-GGCCGCGGGCUGCGCGGCCGACCAGG-3'	(((((((.....)))))))....... (-16.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	26	chr17:76265562-76265587	UBALD2	HGNC:28438	ENSG00000185262	GGCCGCGGGCUGCGCGGCCGACCAGG
hsa_m5C_1773	chr17	76265579	76265580	+	ENST00000327490	C233	m5C	C19	5'-GGCCGCGGGCUGCGCGGCCGACCAGG-3'	(((((((.....)))))))....... (-16.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	26	chr17:76265562-76265587	UBALD2	HGNC:28438	ENSG00000185262	GGCCGCGGGCUGCGCGGCCGACCAGG
hsa_m5C_1774	chr17	76270956	76270957	+	ENST00000327490	C1105	m5C	C6	5'-GGUCCCAGGAGGGCCUGAGG-3'	(((((.....)))))..... ( -7.10)	loop	mRNA	293T;Muscle;Muscle,spleen	UBS-seq:(High);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	31061524;38168991	20	chr17:76270952-76270971	UBALD2	HGNC:28438	ENSG00000185262	GGUCCCAGGAGGGCCUGAGG
hsa_m5C_1775	chr8	33461445	33461446	-	ENST00000327671	C363	m5C	C19	5'-GGGCAGGGCAGCAUGGUGCGG-3'	.......(((......))).. ( -2.80)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	21	chr8:33461444-33461464	FUT10	HGNC:19234	ENSG00000172728	GGGCAGGGCAGCAUGGUGCGG
hsa_m5C_1776	chr3	49699482	49699483	+	ENST00000327697	C866	m5C	C7	5'-GGCAGGCUACCGGCCCCUGCAGG-3'	.(((((.........)))))... ( -6.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr3:49699477-49699499	RNF123	HGNC:21148	ENSG00000164068	GGCAGGCUACCGGCCCCUGCAGG
hsa_m5C_1777	chr3	49699485	49699486	+	ENST00000327697	C869	m5C	C10	5'-GGCAGGCUACCGGCCCCUGCAGG-3'	.(((((.........)))))... ( -6.60)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr3:49699477-49699499	RNF123	HGNC:21148	ENSG00000164068	GGCAGGCUACCGGCCCCUGCAGG
hsa_m5C_1778	chr3	49699025	49699026	+	ENST00000327697	C771	m5C	C6	5'-GGGGCCUGGGUAUGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr3:49699021-49699035	RNF123	HGNC:21148	ENSG00000164068	GGGGCCUGGGUAUGG
hsa_m5C_1779	chr19	8390408	8390409	+	ENST00000328024	C50	m5C	C8	5'-GGAAGCGCCAGGACAAUGGGGACCCGG-3'	((.....(((......)))....)).. ( -4.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr19:8390402-8390428	RAB11B	HGNC:9761	ENSG00000185236	GGAAGCGCCAGGACAAUGGGGACCCGG
hsa_m5C_1780	chr16	25257573	25257574	-	ENST00000328086	C272	m5C	C10	5'-GGAACCUGGCGCCGGGCGGGG-3'	....(((.((.....)).))) ( -7.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr16:25257563-25257583	ZKSCAN2	HGNC:25677	ENSG00000155592	GGAACCUGGCGCCGGGCGGGG
hsa_m5C_1781	chr16	25257571	25257572	-	ENST00000328086	C274	m5C	C12	5'-GGAACCUGGCGCCGGGCGGGG-3'	....(((.((.....)).))) ( -7.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	21	chr16:25257563-25257583	ZKSCAN2	HGNC:25677	ENSG00000155592	GGAACCUGGCGCCGGGCGGGG
hsa_m5C_1782	chr16	25257570	25257571	-	ENST00000328086	C275	m5C	C13	5'-GGAACCUGGCGCCGGGCGGGG-3'	....(((.((.....)).))) ( -7.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr16:25257563-25257583	ZKSCAN2	HGNC:25677	ENSG00000155592	GGAACCUGGCGCCGGGCGGGG
hsa_m5C_1783	chr16	25257566	25257567	-	ENST00000328086	C279	m5C	C17	5'-GGAACCUGGCGCCGGGCGGGG-3'	....(((.((.....)).))) ( -7.40)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	21	chr16:25257563-25257583	ZKSCAN2	HGNC:25677	ENSG00000155592	GGAACCUGGCGCCGGGCGGGG
hsa_m5C_1784	chr20	32784774	32784775	+	ENST00000328111	C543	m5C	C9	5'-GGCGAUGGCGACGGGGAAGAUGGGG-3'	.((....))................ ( -1.80)	bulge	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;RMVar database	28418038	25	chr20:32784767-32784791	DNMT3B	HGNC:2979	ENSG00000088305	GGCGAUGGCGACGGGGAAGAUGGGG
hsa_m5C_1785	chr20	32762517	32762518	+	ENST00000328111	C134	m5C	C23	5'-GGCUCCCUGGCGGUCGGGCGAGCGGG-3'	.((((((((.....)))).))))... (-11.60)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	26	chr20:32762496-32762521	DNMT3B	HGNC:2979	ENSG00000088305	GGCUCCCUGGCGGUCGGGCGAGCGGG
hsa_m5C_1786	chr9	116400957	116400958	+	ENST00000328252	C9608	m5C	C8	5'-GGGAGGGCAGGAGAUUUUGAGGCCCUG-3'	...(((((.............))))). ( -7.40)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	27	chr9:116400951-116400977	PAPPA	HGNC:8602	ENSG00000182752	GGGAGGGCAGGAGAUUUUGAGGCCCUG
hsa_m5C_1787	chr3	48588879	48588880	-	ENST00000328333	C2538	m5C	C10	5'-GGCCUGGGGCCGG-3'	((((...)))).. ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	13	chr3:48588877-48588889	COL7A1	HGNC:2214	ENSG00000114270	GGCCUGGGGCCGG
hsa_m5C_1788	chr3	48588878	48588879	-	ENST00000328333	C2539	m5C	C11	5'-GGCCUGGGGCCGG-3'	((((...)))).. ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	13	chr3:48588877-48588889	COL7A1	HGNC:2214	ENSG00000114270	GGCCUGGGGCCGG
hsa_m5C_1789	chr15	90230391	90230392	-	ENST00000328649	C724	m5C	C3	5'-GGCCAAGCUGGCCCAGCCUGGAGCUGG-3'	(((((...)))))((((.....)))). (-11.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr15:90230368-90230394	CIB1	HGNC:16920	ENSG00000185043	GGCCAAGCUGGCCCAGCCUGGAGCUGG
hsa_m5C_1790	chr15	90230390	90230391	-	ENST00000328649	C725	m5C	C4	5'-GGCCAAGCUGGCCCAGCCUGGAGCUGG-3'	(((((...)))))((((.....)))). (-11.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr15:90230368-90230394	CIB1	HGNC:16920	ENSG00000185043	GGCCAAGCUGGCCCAGCCUGGAGCUGG
hsa_m5C_1791	chr15	90230382	90230383	-	ENST00000328649	C733	m5C	C12	5'-GGCCAAGCUGGCCCAGCCUGGAGCUGG-3'	(((((...)))))((((.....)))). (-11.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr15:90230368-90230394	CIB1	HGNC:16920	ENSG00000185043	GGCCAAGCUGGCCCAGCCUGGAGCUGG
hsa_m5C_1792	chr15	90230380	90230381	-	ENST00000328649	C735	m5C	C14	5'-GGCCAAGCUGGCCCAGCCUGGAGCUGG-3'	(((((...)))))((((.....)))). (-11.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr15:90230368-90230394	CIB1	HGNC:16920	ENSG00000185043	GGCCAAGCUGGCCCAGCCUGGAGCUGG
hsa_m5C_1793	chr17	81912466	81912467	-	ENST00000328666	C1197	m5C	C4	5'-GGGCUGGUUUGGCAGGG-3'	...(((......))).. ( -2.40)	loop	mRNA	HeLa	RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30872485	17	chr17:81912454-81912470	SIRT7	HGNC:14935	ENSG00000187531	GGGCUGGUUUGGCAGGG
hsa_m5C_1794	chr12	79590319	79590320	-	ENST00000328827	C3550	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr12:79590311-79590325	PAWR	HGNC:8614	ENSG00000177425	GGAGGCUGAGGCAGG
hsa_m5C_1795	chr7	4755370	4755371	+	ENST00000328914	C1052	m5C	C11	5'-GGACGGCCGACAAAGGCUGG-3'	...(((((......))))). ( -8.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr7:4755361-4755380	FOXK1	HGNC:23480	ENSG00000164916	GGACGGCCGACAAAGGCUGG
hsa_m5C_1796	chr7	4770298	4770299	+	ENST00000328914	C10051	m5C	C6	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	15	chr7:4770294-4770308	FOXK1	HGNC:23480	ENSG00000164916	GGAGGCCGAGGCAGG
hsa_m5C_1797	chr7	4770299	4770300	+	ENST00000328914	C10052	m5C	C7	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	15	chr7:4770294-4770308	FOXK1	HGNC:23480	ENSG00000164916	GGAGGCCGAGGCAGG
hsa_m5C_1798	chr12	57233214	57233215	+	ENST00000328923	C961	m5C	C16	5'-GGAAAGGGGUGAAGGCUGUGG-3'	.......(((....))).... ( -0.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	21	chr12:57233200-57233220	SHMT2	HGNC:10852	ENSG00000182199	GGAAAGGGGUGAAGGCUGUGG
hsa_m5C_1799	chr12	57230894	57230895	+	ENST00000328923	C194	m5C	C4	5'-GGGCUGGACAGGCCAGG-3'	.((((.....))))... ( -5.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr12:57230892-57230908	SHMT2	HGNC:10852	ENSG00000182199	GGGCUGGACAGGCCAGG
hsa_m5C_1800	chr12	57230904	57230905	+	ENST00000328923	C204	m5C	C14	5'-GGGCUGGACAGGCCAGG-3'	.((((.....))))... ( -5.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr12:57230892-57230908	SHMT2	HGNC:10852	ENSG00000182199	GGGCUGGACAGGCCAGG
hsa_m5C_1801	chr17	76076934	76076935	+	ENST00000329003	C771	m5C	C6	5'-GGCCGCGGGCUCGGGUGCCCGG-3'	.....(((((......))))). (-10.50)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	m5C-RIP-seq:(Medium);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	31061524	22	chr17:76076930-76076951	GALR2	HGNC:4133	ENSG00000182687	GGCCGCGGGCUCGGGUGCCCGG
hsa_m5C_1802	chr17	77498621	77498622	+	ENST00000329047	C2480	m5C	C3	5'-GGCAUGGAGGAGAAGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	16	chr17:77498620-77498635	SEPTIN9	HGNC:7323	ENSG00000184640	GGCAUGGAGGAGAAGG
hsa_m5C_1803	chr15	93045340	93045341	-	ENST00000329082	C1289	m5C	C5	5'-GGCACCGGUGCCCGCAGGCUGG-3'	....(((((........))))) ( -5.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr15:93045324-93045345	RGMA	HGNC:30308	ENSG00000182175	GGCACCGGUGCCCGCAGGCUGG
hsa_m5C_1804	chr15	93045339	93045340	-	ENST00000329082	C1290	m5C	C6	5'-GGCACCGGUGCCCGCAGGCUGG-3'	....(((((........))))) ( -5.40)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr15:93045324-93045345	RGMA	HGNC:30308	ENSG00000182175	GGCACCGGUGCCCGCAGGCUGG
hsa_m5C_1805	chr17	442274	442275	-	ENST00000329099	C1324	m5C	C17	5'-GGCAAAACGGAGUGGACGG-3'	.......((.......)). ( -0.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr17:442273-442291	RFLNB	HGNC:28705	ENSG00000183688	GGCAAAACGGAGUGGACGG
hsa_m5C_1806	chr20	3164966	3164967	-	ENST00000329152	C2907	m5C	C4	5'-GGCCAGCCUGGAGCUGGGCGAAGG-3'	..(((((.....)))))....... ( -7.60)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr20:3164947-3164970	LZTS3	HGNC:30139	ENSG00000088899	GGCCAGCCUGGAGCUGGGCGAAGG
hsa_m5C_1807	chr20	3166992	3166993	-	ENST00000329152	C1569	m5C	C7	5'-GGGUACCCGCACAGGGGGUGGGGGCAGCCAGGG-3'	.(((.(((.(((.....))).)))..))).... (-13.00)	bulge	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	33	chr20:3166967-3166999	LZTS3	HGNC:30139	ENSG00000088899	GGGUACCCGCACAGGGGGUGGGGGCAGCCAGGG
hsa_m5C_1808	chr5	173235175	173235176	-	ENST00000329198	C31	m5C	C12	5'-GGGUGCGCGGGCGGGCGGCGGCACCAUGCAGGG-3'	.(((((((.........)).)))))........ (-10.40)	loop	mRNA	heart	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	33	chr5:173235155-173235187	NKX2-5	HGNC:2488	ENSG00000183072	GGGUGCGCGGGCGGGCGGCGGCACCAUGCAGGG
hsa_m5C_1809	chr5	173235171	173235172	-	ENST00000329198	C35	m5C	C16	5'-GGGUGCGCGGGCGGGCGGCGGCACCAUGCAGGG-3'	.(((((((.........)).)))))........ (-10.40)	loop	mRNA	heart	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	33	chr5:173235155-173235187	NKX2-5	HGNC:2488	ENSG00000183072	GGGUGCGCGGGCGGGCGGCGGCACCAUGCAGGG
hsa_m5C_1810	chr5	173235168	173235169	-	ENST00000329198	C38	m5C	C19	5'-GGGUGCGCGGGCGGGCGGCGGCACCAUGCAGGG-3'	.(((((((.........)).)))))........ (-10.40)	loop	mRNA	heart	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	33	chr5:173235155-173235187	NKX2-5	HGNC:2488	ENSG00000183072	GGGUGCGCGGGCGGGCGGCGGCACCAUGCAGGG
hsa_m5C_1811	chr5	173235165	173235166	-	ENST00000329198	C41	m5C	C22	5'-GGGUGCGCGGGCGGGCGGCGGCACCAUGCAGGG-3'	.(((((((.........)).)))))........ (-10.40)	loop	mRNA	heart	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	33	chr5:173235155-173235187	NKX2-5	HGNC:2488	ENSG00000183072	GGGUGCGCGGGCGGGCGGCGGCACCAUGCAGGG
hsa_m5C_1812	chr19	1912389	1912390	+	ENST00000329478	C542	m5C	C8	5'-GGCUGGGCCGGCCUCGG-3'	(((((...))))).... ( -6.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr19:1912383-1912399	ADAT3	HGNC:25151	ENSG00000213638	GGCUGGGCCGGCCUCGG
hsa_m5C_1813	chr22	19802166	19802167	-	ENST00000329517	C738	m5C	C9	5'-GGAUGGAUCGGUGG-3'	NA	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	14	chr22:19802162-19802175	GNB1L	HGNC:4397	ENSG00000185838	GGAUGGAUCGGUGG
hsa_m5C_1814	chr4	2934101	2934102	-	ENST00000329687	C357	m5C	C11	5'-GGGUUCGGGGCGGGGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr4:2934097-2934112	MFSD10	HGNC:16894	ENSG00000109736	GGGUUCGGGGCGGGGG
hsa_m5C_1815	chr6	110958779	110958780	+	ENST00000329970	C75	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	30526041	11	chr6:110958772-110958782	GTF3C6	HGNC:20872	ENSG00000155115	GGCGGCGGCGG
hsa_m5C_1816	chr15	90102330	90102331	-	ENST00000330062	C138	m5C	C4	5'-GGCCUGGGCGCCGGCGG-3'	.(((.((...))))).. ( -4.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr15:90102318-90102334	IDH2	HGNC:5383	ENSG00000182054	GGCCUGGGCGCCGGCGG
hsa_m5C_1817	chr15	90102323	90102324	-	ENST00000330062	C145	m5C	C11	5'-GGCCUGGGCGCCGGCGG-3'	.(((.((...))))).. ( -4.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr15:90102318-90102334	IDH2	HGNC:5383	ENSG00000182054	GGCCUGGGCGCCGGCGG
hsa_m5C_1818	chr15	90102322	90102323	-	ENST00000330062	C146	m5C	C12	5'-GGCCUGGGCGCCGGCGG-3'	.(((.((...))))).. ( -4.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr15:90102318-90102334	IDH2	HGNC:5383	ENSG00000182054	GGCCUGGGCGCCGGCGG
hsa_m5C_1819	chr15	90102319	90102320	-	ENST00000330062	C149	m5C	C15	5'-GGCCUGGGCGCCGGCGG-3'	.(((.((...))))).. ( -4.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr15:90102318-90102334	IDH2	HGNC:5383	ENSG00000182054	GGCCUGGGCGCCGGCGG
hsa_m5C_1820	chr8	143297413	143297414	+	ENST00000330143	C2120	m5C	C7	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	frontal_cortex	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr8:143297408-143297422	ZNF696	HGNC:25872	ENSG00000185730	GGGAGGCCGAGGCGG
hsa_m5C_1821	chr8	143298144	143298145	+	ENST00000330143	C2851	m5C	C13	5'-GGGGUGCGGUUGCAGG-3'	....(((....))).. ( -1.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	16	chr8:143298133-143298148	ZNF696	HGNC:25872	ENSG00000185730	GGGGUGCGGUUGCAGG
hsa_m5C_1822	chr1	19259751	19259752	+	ENST00000330263	C1673	m5C	C3	5'-GGCUGCGGAUCUGAUGGAUGCCAGG-3'	(((.....((((...)))))))... ( -3.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr1:19259750-19259774	MRTO4	HGNC:18477	ENSG00000053372	GGCUGCGGAUCUGAUGGAUGCCAGG
hsa_m5C_1823	chr18	35249415	35249416	+	ENST00000330501	C4867	m5C	C7	5'-GGGAGGCUGAGGCGGGUGG-3'	.....(((......))).. ( -0.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	19	chr18:35249410-35249428	ZNF397	HGNC:18818	ENSG00000186812	GGGAGGCUGAGGCGGGUGG
hsa_m5C_1824	chr18	35249421	35249422	+	ENST00000330501	C4873	m5C	C13	5'-GGGAGGCUGAGGCGGGUGG-3'	.....(((......))).. ( -0.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	19	chr18:35249410-35249428	ZNF397	HGNC:18818	ENSG00000186812	GGGAGGCUGAGGCGGGUGG
hsa_m5C_1825	chr11	62653219	62653220	-	ENST00000330574	C83	m5C	C5	5'-GGGCCCCAGGGCCACCUGGGCCUGCCCCGG-3'	((((((((((....))))))...))))... (-18.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr11:62653195-62653224	INTS5	HGNC:29352	ENSG00000185085	GGGCCCCAGGGCCACCUGGGCCUGCCCCGG
hsa_m5C_1826	chr11	62653218	62653219	-	ENST00000330574	C84	m5C	C6	5'-GGGCCCCAGGGCCACCUGGGCCUGCCCCGG-3'	((((((((((....))))))...))))... (-18.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr11:62653195-62653224	INTS5	HGNC:29352	ENSG00000185085	GGGCCCCAGGGCCACCUGGGCCUGCCCCGG
hsa_m5C_1827	chr11	62653255	62653256	-	ENST00000330574	C47	m5C	C15	5'-GGGCUCGGCUCGGGCUCCGG-3'	(((((((...))))).)).. ( -8.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr11:62653251-62653270	INTS5	HGNC:29352	ENSG00000185085	GGGCUCGGCUCGGGCUCCGG
hsa_m5C_1828	chr11	62653253	62653254	-	ENST00000330574	C49	m5C	C17	5'-GGGCUCGGCUCGGGCUCCGG-3'	(((((((...))))).)).. ( -8.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr11:62653251-62653270	INTS5	HGNC:29352	ENSG00000185085	GGGCUCGGCUCGGGCUCCGG
hsa_m5C_1829	chr11	62653252	62653253	-	ENST00000330574	C50	m5C	C18	5'-GGGCUCGGCUCGGGCUCCGG-3'	(((((((...))))).)).. ( -8.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr11:62653251-62653270	INTS5	HGNC:29352	ENSG00000185085	GGGCUCGGCUCGGGCUCCGG
hsa_m5C_1830	chr8	37899402	37899403	-	ENST00000330843	C95	m5C	C22	5'-GGCUGGCCGGGGCCUGGGGGCCGUGUGG-3'	((((..((((...)))).))))...... (-10.00)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	28	chr8:37899397-37899424	RAB11FIP1	HGNC:30265	ENSG00000156675	GGCUGGCCGGGGCCUGGGGGCCGUGUGG
hsa_m5C_1831	chr17	78359919	78359920	-	ENST00000330871	C158	m5C	C20	5'-GGGUGCGCAGGGGGCAGGGCGGGCGCCCAGGGG-3'	((((((((..........))..))))))..... (-11.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	33	chr17:78359907-78359939	SOCS3	HGNC:19391	ENSG00000184557	GGGUGCGCAGGGGGCAGGGCGGGCGCCCAGGGG
hsa_m5C_1832	chr17	78357642	78357643	-	ENST00000330871	C1869	m5C	C13	5'-GGGUGGAUGGAGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF;HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database;RMVar database	28418038	15	chr17:78357641-78357655	SOCS3	HGNC:19391	ENSG00000184557	GGGUGGAUGGAGCGG
hsa_m5C_1833	chr16	89693414	89693415	+	ENST00000331006	C2156	m5C	C17	5'-GGAUUUCGGCCUGGCCCGG-3'	......(((......))). ( -2.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	19	chr16:89693399-89693417	CDK10	HGNC:1770	ENSG00000185324	GGAUUUCGGCCUGGCCCGG
hsa_m5C_1834	chr19	39110510	39110511	+	ENST00000331256	C1921	m5C	C3	5'-GGCAAGGGCAUCGCCAGGUGGG-3'	(((.........)))....... ( -3.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	22	chr19:39110509-39110530	ACP7	HGNC:33781	ENSG00000183760	GGCAAGGGCAUCGCCAGGUGGG
hsa_m5C_1835	chr19	39110521	39110522	+	ENST00000331256	C1932	m5C	C14	5'-GGCAAGGGCAUCGCCAGGUGGG-3'	(((.........)))....... ( -3.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	22	chr19:39110509-39110530	ACP7	HGNC:33781	ENSG00000183760	GGCAAGGGCAUCGCCAGGUGGG
hsa_m5C_1836	chr19	39110522	39110523	+	ENST00000331256	C1933	m5C	C15	5'-GGCAAGGGCAUCGCCAGGUGGG-3'	(((.........)))....... ( -3.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	22	chr19:39110509-39110530	ACP7	HGNC:33781	ENSG00000183760	GGCAAGGGCAUCGCCAGGUGGG
hsa_m5C_1837	chr21	45287877	45287878	-	ENST00000331343	C21	m5C	C8	5'-GGCCGCCCGGGGCCAUGG-3'	((((......)))).... ( -8.70)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	18	chr21:45287868-45287885	POFUT2	HGNC:14683	ENSG00000186866	GGCCGCCCGGGGCCAUGG
hsa_m5C_1838	chr2	151249635	151249636	-	ENST00000331426	C2480	m5C	C7	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr2:151249628-151249642	RBM43	HGNC:24790	ENSG00000184898	GGGAGGCCGAGGCGG
hsa_m5C_1839	chr2	151249634	151249635	-	ENST00000331426	C2481	m5C	C8	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr2:151249628-151249642	RBM43	HGNC:24790	ENSG00000184898	GGGAGGCCGAGGCGG
hsa_m5C_1840	chr2	151249629	151249630	-	ENST00000331426	C2486	m5C	C13	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr2:151249628-151249642	RBM43	HGNC:24790	ENSG00000184898	GGGAGGCCGAGGCGG
hsa_m5C_1841	chr17	45240607	45240608	+	ENST00000331495	C1453	m5C	C20	5'-GGAGCACAUGGAGGAACUGCAGG-3'	...(((...........)))... ( -0.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr17:45240589-45240611	FMNL1	HGNC:1212	ENSG00000184922	GGAGCACAUGGAGGAACUGCAGG
hsa_m5C_1842	chr11	397185	397186	+	ENST00000331563	C769	m5C	C11	5'-GGCAGGGGGGCUGG-3'	..(((.....))). ( -2.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	14	chr11:397176-397189	PKP3	HGNC:9025	ENSG00000184363	GGCAGGGGGGCUGG
hsa_m5C_1843	chr8	37695817	37695818	+	ENST00000331569	C37	m5C	C18	5'-GGGGCCAGCGGCGGUGGCGGCGG-3'	....((.((.((....)).)))) ( -7.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	23	chr8:37695801-37695823	ZNF703	HGNC:25883	ENSG00000183779	GGGGCCAGCGGCGGUGGCGGCGG
hsa_m5C_1844	chr22	31278701	31278702	+	ENST00000331728	C2289	m5C	C3	5'-GGCCUUUGGGCCAGGAGG-3'	((((....))))...... ( -8.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr22:31278700-31278717	LIMK2	HGNC:6614	ENSG00000182541	GGCCUUUGGGCCAGGAGG
hsa_m5C_1845	chr22	31278709	31278710	+	ENST00000331728	C2297	m5C	C11	5'-GGCCUUUGGGCCAGGAGG-3'	((((....))))...... ( -8.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr22:31278700-31278717	LIMK2	HGNC:6614	ENSG00000182541	GGCCUUUGGGCCAGGAGG
hsa_m5C_1846	chr14	105145848	105145849	-	ENST00000331782	C3190	m5C	C3	5'-GGCCUGGGGGGAGUGCGG-3'	.((((......)).)).. ( -2.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	18	chr14:105145834-105145851	JAG2	HGNC:6189	ENSG00000184916	GGCCUGGGGGGAGUGCGG
hsa_m5C_1847	chr14	105145847	105145848	-	ENST00000331782	C3191	m5C	C4	5'-GGCCUGGGGGGAGUGCGG-3'	.((((......)).)).. ( -2.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	18	chr14:105145834-105145851	JAG2	HGNC:6189	ENSG00000184916	GGCCUGGGGGGAGUGCGG
hsa_m5C_1848	chr12	52233429	52233430	+	ENST00000331817	C188	m5C	C14	5'-GGCCUCGGCGCCUCACGGCCGCGCGUGG-3'	..((.(((((((....)).))).)).)) (-10.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr12:52233417-52233444	KRT7	HGNC:6445	ENSG00000135480	GGCCUCGGCGCCUCACGGCCGCGCGUGG
hsa_m5C_1849	chr12	52233431	52233432	+	ENST00000331817	C190	m5C	C16	5'-GGCCUCGGCGCCUCACGGCCGCGCGUGG-3'	..((.(((((((....)).))).)).)) (-10.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr12:52233417-52233444	KRT7	HGNC:6445	ENSG00000135480	GGCCUCGGCGCCUCACGGCCGCGCGUGG
hsa_m5C_1850	chr14	29927426	29927427	-	ENST00000331968	C421	m5C	C6	5'-GGUCCCAGGGUCCGGGCCCGG-3'	(((((........)))))... ( -7.00)	loop	mRNA	T24;293T;293T,lung,Testis,T24	m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;31061524	21	chr14:29927412-29927432	PRKD1	HGNC:9407	ENSG00000184304	GGUCCCAGGGUCCGGGCCCGG
hsa_m5C_1851	chr1	201008821	201008822	-	ENST00000332129	C711	m5C	C5	5'-GGCACAGGAGCAGGGCGUGG-3'	.((......))......... ( -0.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	20	chr1:201008807-201008826	KIF21B	HGNC:29442	ENSG00000116852	GGCACAGGAGCAGGGCGUGG
hsa_m5C_1852	chr1	201023561	201023562	-	ENST00000332129	C139	m5C	C20	5'-GGGCCCAGCCCCGGGGGGCCGGCCGCGGG-3'	.((((..((((....)))).))))..... (-14.70)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	29	chr1:201023553-201023581	KIF21B	HGNC:29442	ENSG00000116852	GGGCCCAGCCCCGGGGGGCCGGCCGCGGG
hsa_m5C_1853	chr18	7955215	7955216	+	ENST00000332175	C1971	m5C	C10	5'-GGGGAUGGGCCCAUUGUGGCCCGAGAGG-3'	......(((((......)))))...... (-10.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr18:7955207-7955234	PTPRM	HGNC:9675	ENSG00000173482	GGGGAUGGGCCCAUUGUGGCCCGAGAGG
hsa_m5C_1854	chr18	7955216	7955217	+	ENST00000332175	C1972	m5C	C11	5'-GGGGAUGGGCCCAUUGUGGCCCGAGAGG-3'	......(((((......)))))...... (-10.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr18:7955207-7955234	PTPRM	HGNC:9675	ENSG00000173482	GGGGAUGGGCCCAUUGUGGCCCGAGAGG
hsa_m5C_1855	chr18	7955217	7955218	+	ENST00000332175	C1973	m5C	C12	5'-GGGGAUGGGCCCAUUGUGGCCCGAGAGG-3'	......(((((......)))))...... (-10.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr18:7955207-7955234	PTPRM	HGNC:9675	ENSG00000173482	GGGGAUGGGCCCAUUGUGGCCCGAGAGG
hsa_m5C_1856	chr18	7955225	7955226	+	ENST00000332175	C1981	m5C	C20	5'-GGGGAUGGGCCCAUUGUGGCCCGAGAGG-3'	......(((((......)))))...... (-10.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr18:7955207-7955234	PTPRM	HGNC:9675	ENSG00000173482	GGGGAUGGGCCCAUUGUGGCCCGAGAGG
hsa_m5C_1857	chr18	7955226	7955227	+	ENST00000332175	C1982	m5C	C21	5'-GGGGAUGGGCCCAUUGUGGCCCGAGAGG-3'	......(((((......)))))...... (-10.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr18:7955207-7955234	PTPRM	HGNC:9675	ENSG00000173482	GGGGAUGGGCCCAUUGUGGCCCGAGAGG
hsa_m5C_1858	chr18	7955227	7955228	+	ENST00000332175	C1983	m5C	C22	5'-GGGGAUGGGCCCAUUGUGGCCCGAGAGG-3'	......(((((......)))))...... (-10.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr18:7955207-7955234	PTPRM	HGNC:9675	ENSG00000173482	GGGGAUGGGCCCAUUGUGGCCCGAGAGG
hsa_m5C_1859	chr6	169702806	169702807	+	ENST00000332290	C682	m5C	C17	5'-GGCGCCCAGUGGGCAUCGGCGUCUAUGG-3'	((((((...........))))))..... ( -8.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr6:169702791-169702818	C6orf120	HGNC:21247	ENSG00000185127	GGCGCCCAGUGGGCAUCGGCGUCUAUGG
hsa_m5C_1860	chr6	169702481	169702482	+	ENST00000332290	C357	m5C	C8	5'-GGGAGGGCCGCGCCCUGGACGACGG-3'	...(((((...)))))......... ( -7.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr6:169702475-169702499	C6orf120	HGNC:21247	ENSG00000185127	GGGAGGGCCGCGCCCUGGACGACGG
hsa_m5C_1861	chr20	41366573	41366574	-	ENST00000332312	C245	m5C	C8	5'-GGGGGCGCAGGCCAGG-3'	...(((....)))... ( -4.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr20:41366566-41366581	EMILIN3	HGNC:16123	ENSG00000183798	GGGGGCGCAGGCCAGG
hsa_m5C_1862	chr22	19766551	19766552	+	ENST00000332710	C1302	m5C	C15	5'-GGCGCGCCCGGAGGCCGG-3'	..((.(((....))))). ( -5.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr22:19766538-19766555	TBX1	HGNC:11592	ENSG00000184058	GGCGCGCCCGGAGGCCGG
hsa_m5C_1863	chr22	19760950	19760951	+	ENST00000332710	C210	m5C	C17	5'-GGGCCGCGGGGGGCUUCCCGGG-3'	...((.(((((....))))))) ( -8.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	22	chr22:19760935-19760956	TBX1	HGNC:11592	ENSG00000184058	GGGCCGCGGGGGGCUUCCCGGG
hsa_m5C_1864	chr22	19760952	19760953	+	ENST00000332710	C212	m5C	C19	5'-GGGCCGCGGGGGGCUUCCCGGG-3'	...((.(((((....))))))) ( -8.40)	loop	mRNA	293T;HeLa	m5C-RIP-seq:(Medium),RNA-BisSeq:(High);UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;38168991	28418038;38168991	22	chr22:19760935-19760956	TBX1	HGNC:11592	ENSG00000184058	GGGCCGCGGGGGGCUUCCCGGG
hsa_m5C_1865	chr22	19766505	19766506	+	ENST00000332710	C1256	m5C	C5	5'-GGGGCCGGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	11	chr22:19766502-19766512	TBX1	HGNC:11592	ENSG00000184058	GGGGCCGGCGG
hsa_m5C_1866	chr3	49174745	49174746	+	ENST00000332780	C768	m5C	C27	5'-GGGAACAAGAUCUAUGUCCUGG^GGGGCCGCCAGGG-3'	.................(((((.......))))). ( -8.50)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	35	chr3:49174382-49174403;49174742-49174754	KLHDC8B	HGNC:28557	ENSG00000185909	GGGAACAAGAUCUAUGUCCUGGGGGGCCGCCAGGG
hsa_m5C_1867	chr3	49174746	49174747	+	ENST00000332780	C769	m5C	C28	5'-GGGAACAAGAUCUAUGUCCUGG^GGGGCCGCCAGGG-3'	.................(((((.......))))). ( -8.50)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	35	chr3:49174382-49174403;49174742-49174754	KLHDC8B	HGNC:28557	ENSG00000185909	GGGAACAAGAUCUAUGUCCUGGGGGGCCGCCAGGG
hsa_m5C_1868	chr15	88629374	88629375	+	ENST00000332810	C797	m5C	C4	5'-GGCCCGGGUCUCUCUAAAGGACCUGG-3'	...((((((((.......)))))))) (-11.30)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr15:88629372-88629397	AEN	HGNC:25722	ENSG00000181026	GGCCCGGGUCUCUCUAAAGGACCUGG
hsa_m5C_1869	chr10	49115494	49115495	-	ENST00000332853	C28	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	11	chr10:49115490-49115500	VSTM4	HGNC:26470	ENSG00000165633	GGCGGCGGCGG
hsa_m5C_1870	chr14	103136049	103136050	+	ENST00000333007	C3342	m5C	C12	5'-GGGUGGUCCCCCGAGGGCUUGG-3'	....(((((.....)))))... ( -4.70)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr14:103136039-103136060	TNFAIP2	HGNC:11895	ENSG00000185215	GGGUGGUCCCCCGAGGGCUUGG
hsa_m5C_1871	chr22	38843533	38843534	-	ENST00000333039	C495	m5C	C11	5'-GGGGGCCCAGCAGGGGGACGCGGCGGGCGCUGCGCCGGG-3'	.....(((....)))((.((((((....))))))))... (-17.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	39	chr22:38843506-38843544	NPTXR	HGNC:7954	ENSG00000221890	GGGGGCCCAGCAGGGGGACGCGGCGGGCGCUGCGCCGGG
hsa_m5C_1872	chr16	2214528	2214529	-	ENST00000333503	C312	m5C	C5	5'-GGCGCCUGGGCUUCGGCGGCCCCGCGGG-3'	..(((..(((((.....))))).))).. (-11.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	28	chr16:2214506-2214533	PGP	HGNC:8909	ENSG00000184207	GGCGCCUGGGCUUCGGCGGCCCCGCGGG
hsa_m5C_1873	chr3	129316034	129316035	-	ENST00000333762	C252	m5C	C12	5'-GGCCCCAGGCCCGGCCGCGG-3'	((((........)))).... ( -7.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr3:129316027-129316046	H1-10	HGNC:4722	ENSG00000184897	GGCCCCAGGCCCGGCCGCGG
hsa_m5C_1874	chr3	129316028	129316029	-	ENST00000333762	C258	m5C	C18	5'-GGCCCCAGGCCCGGCCGCGG-3'	((((........)))).... ( -7.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr3:129316027-129316046	H1-10	HGNC:4722	ENSG00000184897	GGCCCCAGGCCCGGCCGCGG
hsa_m5C_1875	chr17	7857267	7857268	-	ENST00000333775	C587	m5C	C7	5'-GGGCUGCCGGGAGCUGUGGUUCCGCGGGCGGG-3'	...(((((((((((....))))).)).)))). (-13.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	32	chr17:7857243-7857274	NAA38	HGNC:28212	ENSG00000183011	GGGCUGCCGGGAGCUGUGGUUCCGCGGGCGGG
hsa_m5C_1876	chr18	11882451	11882452	+	ENST00000334049	C2994	m5C	C6	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	15	chr18:11882447-11882461	GNAL	HGNC:4388	ENSG00000141404	GGAGGCCGAGGCAGG
hsa_m5C_1877	chr19	32676349	32676350	+	ENST00000334176	C503	m5C	C6	5'-GGUGGCUCGGCGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	30526041	13	chr19:32676345-32676357	RGS9BP	HGNC:30304	ENSG00000186326	GGUGGCUCGGCGG
hsa_m5C_1878	chr19	32676354	32676355	+	ENST00000334176	C508	m5C	C11	5'-GGUGGCUCGGCGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	13	chr19:32676345-32676357	RGS9BP	HGNC:30304	ENSG00000186326	GGUGGCUCGGCGG
hsa_m5C_1879	chr19	49149673	49149674	+	ENST00000334186	C3676	m5C	C15	5'-GGCUGCAGCGGGAGCCCUGGGCUCUCCGG-3'	........((((((((...))))).))). (-12.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	29	chr19:49149660-49149688	PPFIA3	HGNC:9247	ENSG00000177380	GGCUGCAGCGGGAGCCCUGGGCUCUCCGG
hsa_m5C_1880	chr19	49149674	49149675	+	ENST00000334186	C3677	m5C	C16	5'-GGCUGCAGCGGGAGCCCUGGGCUCUCCGG-3'	........((((((((...))))).))). (-12.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	29	chr19:49149660-49149688	PPFIA3	HGNC:9247	ENSG00000177380	GGCUGCAGCGGGAGCCCUGGGCUCUCCGG
hsa_m5C_1881	chr19	49149675	49149676	+	ENST00000334186	C3678	m5C	C17	5'-GGCUGCAGCGGGAGCCCUGGGCUCUCCGG-3'	........((((((((...))))).))). (-12.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	29	chr19:49149660-49149688	PPFIA3	HGNC:9247	ENSG00000177380	GGCUGCAGCGGGAGCCCUGGGCUCUCCGG
hsa_m5C_1882	chr14	74903173	74903174	+	ENST00000334220	C2244	m5C	C11	5'-GGCAGUGGGACCAAGCGUGGUCCCGAGG-3'	.....((((((((....))))))))... (-13.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr14:74903164-74903191	DLST	HGNC:2911	ENSG00000119689	GGCAGUGGGACCAAGCGUGGUCCCGAGG
hsa_m5C_1883	chr14	74903174	74903175	+	ENST00000334220	C2245	m5C	C12	5'-GGCAGUGGGACCAAGCGUGGUCCCGAGG-3'	.....((((((((....))))))))... (-13.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr14:74903164-74903191	DLST	HGNC:2911	ENSG00000119689	GGCAGUGGGACCAAGCGUGGUCCCGAGG
hsa_m5C_1884	chr14	74903184	74903185	+	ENST00000334220	C2255	m5C	C22	5'-GGCAGUGGGACCAAGCGUGGUCCCGAGG-3'	.....((((((((....))))))))... (-13.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr14:74903164-74903191	DLST	HGNC:2911	ENSG00000119689	GGCAGUGGGACCAAGCGUGGUCCCGAGG
hsa_m5C_1885	chr14	74903185	74903186	+	ENST00000334220	C2256	m5C	C23	5'-GGCAGUGGGACCAAGCGUGGUCCCGAGG-3'	.....((((((((....))))))))... (-13.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr14:74903164-74903191	DLST	HGNC:2911	ENSG00000119689	GGCAGUGGGACCAAGCGUGGUCCCGAGG
hsa_m5C_1886	chr14	74903186	74903187	+	ENST00000334220	C2257	m5C	C24	5'-GGCAGUGGGACCAAGCGUGGUCCCGAGG-3'	.....((((((((....))))))))... (-13.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr14:74903164-74903191	DLST	HGNC:2911	ENSG00000119689	GGCAGUGGGACCAAGCGUGGUCCCGAGG
hsa_m5C_1887	chr11	72576351	72576352	-	ENST00000334456	C4073	m5C	C23	5'-GGGCUUGGGAGACCCCAUAGGGCCGGG-3'	.((((((((....))))...))))... (-10.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr11:72576348-72576374	PDE2A	HGNC:8777	ENSG00000186642	GGGCUUGGGAGACCCCAUAGGGCCGGG
hsa_m5C_1888	chr11	72576350	72576351	-	ENST00000334456	C4074	m5C	C24	5'-GGGCUUGGGAGACCCCAUAGGGCCGGG-3'	.((((((((....))))...))))... (-10.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr11:72576348-72576374	PDE2A	HGNC:8777	ENSG00000186642	GGGCUUGGGAGACCCCAUAGGGCCGGG
hsa_m5C_1889	chr10	117375421	117375422	-	ENST00000334464	C19	m5C	C6	5'-GGGAGCGUCUGAGGAGGCGCGGGCCGCUGCGGGCUCGGG-3'	....((((((....))))))(((((......)))))... (-18.00)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	39	chr10:117375389-117375427	PDZD8	HGNC:26974	ENSG00000165650	GGGAGCGUCUGAGGAGGCGCGGGCCGCUGCGGGCUCGGG
hsa_m5C_1890	chr10	117375407	117375408	-	ENST00000334464	C33	m5C	C20	5'-GGGAGCGUCUGAGGAGGCGCGGGCCGCUGCGGGCUCGGG-3'	....((((((....))))))(((((......)))))... (-18.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	39	chr10:117375389-117375427	PDZD8	HGNC:26974	ENSG00000165650	GGGAGCGUCUGAGGAGGCGCGGGCCGCUGCGGGCUCGGG
hsa_m5C_1891	chr10	117375403	117375404	-	ENST00000334464	C37	m5C	C24	5'-GGGAGCGUCUGAGGAGGCGCGGGCCGCUGCGGGCUCGGG-3'	....((((((....))))))(((((......)))))... (-18.00)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	39	chr10:117375389-117375427	PDZD8	HGNC:26974	ENSG00000165650	GGGAGCGUCUGAGGAGGCGCGGGCCGCUGCGGGCUCGGG
hsa_m5C_1892	chr10	117375393	117375394	-	ENST00000334464	C47	m5C	C34	5'-GGGAGCGUCUGAGGAGGCGCGGGCCGCUGCGGGCUCGGG-3'	....((((((....))))))(((((......)))))... (-18.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	39	chr10:117375389-117375427	PDZD8	HGNC:26974	ENSG00000165650	GGGAGCGUCUGAGGAGGCGCGGGCCGCUGCGGGCUCGGG
hsa_m5C_1893	chr10	117375391	117375392	-	ENST00000334464	C49	m5C	C36	5'-GGGAGCGUCUGAGGAGGCGCGGGCCGCUGCGGGCUCGGG-3'	....((((((....))))))(((((......)))))... (-18.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	39	chr10:117375389-117375427	PDZD8	HGNC:26974	ENSG00000165650	GGGAGCGUCUGAGGAGGCGCGGGCCGCUGCGGGCUCGGG
hsa_m5C_1894	chr10	79208377	79208378	+	ENST00000334512	C744	m5C	C5	5'-GGAGCUGCUGGACUGGUGCGG-3'	....((((.........)))) ( -2.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr10:79208374-79208394	ZMIZ1	HGNC:16493	ENSG00000108175	GGAGCUGCUGGACUGGUGCGG
hsa_m5C_1895	chr11	118898594	118898595	-	ENST00000334801	C5285	m5C	C3	5'-GGCGUGGGGGGCGAGG-3'	..(((.....)))... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr11:118898582-118898597	BCL9L	HGNC:23688	ENSG00000186174	GGCGUGGGGGGCGAGG
hsa_m5C_1896	chr11	118899325	118899326	-	ENST00000334801	C4554	m5C	C13	5'-GGGACAGGGGGGCCCCCUCAAAACUCCAUGAUGAUGGCCCCAGGG-3'	........((((((...(((........)))....)))))).... (-13.90)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	45	chr11:118899294-118899338	BCL9L	HGNC:23688	ENSG00000186174	GGGACAGGGGGGCCCCCUCAAAACUCCAUGAUGAUGGCCCCAGGG
hsa_m5C_1897	chr11	118899324	118899325	-	ENST00000334801	C4555	m5C	C14	5'-GGGACAGGGGGGCCCCCUCAAAACUCCAUGAUGAUGGCCCCAGGG-3'	........((((((...(((........)))....)))))).... (-13.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	45	chr11:118899294-118899338	BCL9L	HGNC:23688	ENSG00000186174	GGGACAGGGGGGCCCCCUCAAAACUCCAUGAUGAUGGCCCCAGGG
hsa_m5C_1898	chr11	118899323	118899324	-	ENST00000334801	C4556	m5C	C15	5'-GGGACAGGGGGGCCCCCUCAAAACUCCAUGAUGAUGGCCCCAGGG-3'	........((((((...(((........)))....)))))).... (-13.90)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	45	chr11:118899294-118899338	BCL9L	HGNC:23688	ENSG00000186174	GGGACAGGGGGGCCCCCUCAAAACUCCAUGAUGAUGGCCCCAGGG
hsa_m5C_1899	chr11	118899322	118899323	-	ENST00000334801	C4557	m5C	C16	5'-GGGACAGGGGGGCCCCCUCAAAACUCCAUGAUGAUGGCCCCAGGG-3'	........((((((...(((........)))....)))))).... (-13.90)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	45	chr11:118899294-118899338	BCL9L	HGNC:23688	ENSG00000186174	GGGACAGGGGGGCCCCCUCAAAACUCCAUGAUGAUGGCCCCAGGG
hsa_m5C_1900	chr11	118899321	118899322	-	ENST00000334801	C4558	m5C	C17	5'-GGGACAGGGGGGCCCCCUCAAAACUCCAUGAUGAUGGCCCCAGGG-3'	........((((((...(((........)))....)))))).... (-13.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	45	chr11:118899294-118899338	BCL9L	HGNC:23688	ENSG00000186174	GGGACAGGGGGGCCCCCUCAAAACUCCAUGAUGAUGGCCCCAGGG
hsa_m5C_1901	chr11	118901336	118901337	-	ENST00000334801	C3371	m5C	C5	5'-GGGGCCCUGGGGACUUGAUGGGGCCCCAGGG-3'	....((((((((.(((....))))))))))) (-18.60)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	31	chr11:118901311-118901341	BCL9L	HGNC:23688	ENSG00000186174	GGGGCCCUGGGGACUUGAUGGGGCCCCAGGG
hsa_m5C_1902	chr11	118901335	118901336	-	ENST00000334801	C3372	m5C	C6	5'-GGGGCCCUGGGGACUUGAUGGGGCCCCAGGG-3'	....((((((((.(((....))))))))))) (-18.60)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	31	chr11:118901311-118901341	BCL9L	HGNC:23688	ENSG00000186174	GGGGCCCUGGGGACUUGAUGGGGCCCCAGGG
hsa_m5C_1903	chr11	118901334	118901335	-	ENST00000334801	C3373	m5C	C7	5'-GGGGCCCUGGGGACUUGAUGGGGCCCCAGGG-3'	....((((((((.(((....))))))))))) (-18.60)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	31	chr11:118901311-118901341	BCL9L	HGNC:23688	ENSG00000186174	GGGGCCCUGGGGACUUGAUGGGGCCCCAGGG
hsa_m5C_1904	chr11	118901317	118901318	-	ENST00000334801	C3390	m5C	C24	5'-GGGGCCCUGGGGACUUGAUGGGGCCCCAGGG-3'	....((((((((.(((....))))))))))) (-18.60)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	31	chr11:118901311-118901341	BCL9L	HGNC:23688	ENSG00000186174	GGGGCCCUGGGGACUUGAUGGGGCCCCAGGG
hsa_m5C_1905	chr11	118901316	118901317	-	ENST00000334801	C3391	m5C	C25	5'-GGGGCCCUGGGGACUUGAUGGGGCCCCAGGG-3'	....((((((((.(((....))))))))))) (-18.60)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	31	chr11:118901311-118901341	BCL9L	HGNC:23688	ENSG00000186174	GGGGCCCUGGGGACUUGAUGGGGCCCCAGGG
hsa_m5C_1906	chr11	118901315	118901316	-	ENST00000334801	C3392	m5C	C26	5'-GGGGCCCUGGGGACUUGAUGGGGCCCCAGGG-3'	....((((((((.(((....))))))))))) (-18.60)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	31	chr11:118901311-118901341	BCL9L	HGNC:23688	ENSG00000186174	GGGGCCCUGGGGACUUGAUGGGGCCCCAGGG
hsa_m5C_1907	chr11	118901314	118901315	-	ENST00000334801	C3393	m5C	C27	5'-GGGGCCCUGGGGACUUGAUGGGGCCCCAGGG-3'	....((((((((.(((....))))))))))) (-18.60)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	31	chr11:118901311-118901341	BCL9L	HGNC:23688	ENSG00000186174	GGGGCCCUGGGGACUUGAUGGGGCCCCAGGG
hsa_m5C_1908	chr19	50482814	50482815	+	ENST00000334976	C1383	m5C	C11	5'-GGCUGGAUGGCCGG-3'	((((....)))).. ( -5.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	14	chr19:50482805-50482818	EMC10	HGNC:27609	ENSG00000161671	GGCUGGAUGGCCGG
hsa_m5C_1909	chr19	50482815	50482816	+	ENST00000334976	C1384	m5C	C12	5'-GGCUGGAUGGCCGG-3'	((((....)))).. ( -5.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	14	chr19:50482805-50482818	EMC10	HGNC:27609	ENSG00000161671	GGCUGGAUGGCCGG
hsa_m5C_1910	chr3	32454367	32454368	+	ENST00000334983	C696	m5C	C13	5'-GGCUGGUGGGCACCAGG-3'	..(((((....))))). ( -5.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr3:32454356-32454372	CMTM7	HGNC:19178	ENSG00000153551	GGCUGGUGGGCACCAGG
hsa_m5C_1911	chr22	21697176	21697177	+	ENST00000335025	C2091	m5C	C8	5'-GGGCCUGCAGAGGAGGGGCACAGUAGG-3'	..((((.........))))........ ( -4.90)	bulge	mRNA	lung	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	27	chr22:21697170-21697196	PPIL2	HGNC:9261	ENSG00000100023	GGGCCUGCAGAGGAGGGGCACAGUAGG
hsa_m5C_1912	chr14	100468030	100468031	+	ENST00000335290	C1059	m5C	C12	5'-G^GUAUGGAACGCCGUGGACUCCGG-3'	(((((((....)))))....)).. ( -3.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr14:100381746-100381746;100468021-100468043	WDR25	HGNC:21064	ENSG00000176473	GGUAUGGAACGCCGUGGACUCCGG
hsa_m5C_1913	chr19	3644090	3644091	-	ENST00000335312	C1584	m5C	C7	5'-GGAGGACGAAG^GCCGG-3'	NA	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr19:3643377-3643381;3644087-3644097	PIP5K1C	HGNC:8996	ENSG00000186111	GGAGGACGAAGGCCGG
hsa_m5C_1914	chr19	3644219	3644220	-	ENST00000335312	C1455	m5C	C7	5'-GGGGCGCGGCGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	12	chr19:3644215-3644226	PIP5K1C	HGNC:8996	ENSG00000186111	GGGGCGCGGCGG
hsa_m5C_1915	chr13	26557764	26557765	+	ENST00000335327	C83	m5C	C26	5'-GGUGCGCCGGGCGGCCGCGGCGCGGCGGG-3'	....(((((.((.......)).))))).. (-14.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr13:26557740-26557768	WASF3	HGNC:12734	ENSG00000132970	GGUGCGCCGGGCGGCCGCGGCGCGGCGGG
hsa_m5C_1916	chr20	62861779	62861780	-	ENST00000335351	C43	m5C	C18	5'-GGCGCGCCGGCUGUGGCCGG-3'	......(((((....))))) ( -8.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr20:62861778-62861797	TCFL5	HGNC:11646	ENSG00000101190	GGCGCGCCGGCUGUGGCCGG
hsa_m5C_1917	chr20	62861592	62861593	-	ENST00000335351	C230	m5C	C3	5'-GGCGGCGGGGACGCGGCGCUGGGCGAGCCGGGG-3'	.((.(((....))).)).((((.....)))).. (-13.80)	bulge	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	33	chr20:62861563-62861595	TCFL5	HGNC:11646	ENSG00000101190	GGCGGCGGGGACGCGGCGCUGGGCGAGCCGGGG
hsa_m5C_1918	chr20	62861589	62861590	-	ENST00000335351	C233	m5C	C6	5'-GGCGGCGGGGACGCGGCGCUGGGCGAGCCGGGG-3'	.((.(((....))).)).((((.....)))).. (-13.80)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	33	chr20:62861563-62861595	TCFL5	HGNC:11646	ENSG00000101190	GGCGGCGGGGACGCGGCGCUGGGCGAGCCGGGG
hsa_m5C_1919	chr20	62861215	62861216	-	ENST00000335351	C607	m5C	C24	5'-GGGCGGCGGGGACGGAGCGAGGGCCCGGG-3'	((((..((.........))...))))... ( -8.00)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	29	chr20:62861211-62861239	TCFL5	HGNC:11646	ENSG00000101190	GGGCGGCGGGGACGGAGCGAGGGCCCGGG
hsa_m5C_1920	chr20	62861214	62861215	-	ENST00000335351	C608	m5C	C25	5'-GGGCGGCGGGGACGGAGCGAGGGCCCGGG-3'	((((..((.........))...))))... ( -8.00)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	29	chr20:62861211-62861239	TCFL5	HGNC:11646	ENSG00000101190	GGGCGGCGGGGACGGAGCGAGGGCCCGGG
hsa_m5C_1921	chr20	62861213	62861214	-	ENST00000335351	C609	m5C	C26	5'-GGGCGGCGGGGACGGAGCGAGGGCCCGGG-3'	((((..((.........))...))))... ( -8.00)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	29	chr20:62861211-62861239	TCFL5	HGNC:11646	ENSG00000101190	GGGCGGCGGGGACGGAGCGAGGGCCCGGG
hsa_m5C_1922	chr17	74837548	74837549	+	ENST00000335464	C2499	m5C	C3	5'-GGCAGUGGGAGGGCUCUGAGG-3'	..(((.((.....)))))... ( -1.80)	bulge	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	21	chr17:74837547-74837567	TMEM104	HGNC:25984	ENSG00000109066	GGCAGUGGGAGGGCUCUGAGG
hsa_m5C_1923	chr19	51339064	51339065	-	ENST00000335624	C1567	m5C	C3	5'-GGCCCGGCGGGG-3'	..(((....))) ( -3.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	12	chr19:51339056-51339067	VSIG10L	HGNC:27111	ENSG00000186806	GGCCCGGCGGGG
hsa_m5C_1924	chr19	51339059	51339060	-	ENST00000335624	C1572	m5C	C8	5'-GGCCCGGCGGGG-3'	..(((....))) ( -3.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	12	chr19:51339056-51339067	VSIG10L	HGNC:27111	ENSG00000186806	GGCCCGGCGGGG
hsa_m5C_1925	chr2	100820345	100820346	+	ENST00000335681	C208	m5C	C3	5'-GGCGGCGGGAGG-3'	NA	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	28418038	12	chr2:100820344-100820355	NPAS2	HGNC:7895	ENSG00000170485	GGCGGCGGGAGG
hsa_m5C_1926	chr2	100820348	100820349	+	ENST00000335681	C211	m5C	C6	5'-GGCGGCGGGAGG-3'	NA	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	12	chr2:100820344-100820355	NPAS2	HGNC:7895	ENSG00000170485	GGCGGCGGGAGG
hsa_m5C_1927	chr17	73285517	73285518	-	ENST00000335793	C1204	m5C	C6	5'-GGGGCCGGACAGGGCCCGGG-3'	.(((((......)))))... (-11.90)	bulge	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	20	chr17:73285504-73285523	CDC42EP4	HGNC:17147	ENSG00000179604	GGGGCCGGACAGGGCCCGGG
hsa_m5C_1928	chrX	47658980	47658981	-	ENST00000335890	C200	m5C	C4	5'-GGCCAAACUGGAUCGGUCAACAUGG-3'	((((..........))))....... ( -4.00)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	25	chrX:47658960-47658984	UXT	HGNC:12641	ENSG00000126756	GGCCAAACUGGAUCGGUCAACAUGG
hsa_m5C_1929	chr12	49797203	49797204	-	ENST00000335999	C846	m5C	C11	5'-GGCCAGGGGCCUGG-3'	((((...))))... ( -5.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr12:49797201-49797214	NCKAP5L	HGNC:29321	ENSG00000167566	GGCCAGGGGCCUGG
hsa_m5C_1930	chr12	49828372	49828373	-	ENST00000335999	C41	m5C	C4	5'-GGCCAUGGACCUGGCGG-3'	.((((......)))).. ( -5.30)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	17	chr12:49828360-49828376	NCKAP5L	HGNC:29321	ENSG00000167566	GGCCAUGGACCUGGCGG
hsa_m5C_1931	chr12	49791403	49791404	-	ENST00000335999	C4630	m5C	C6	5'-GGGGGCCAGGGG-3'	NA	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	12	chr12:49791398-49791409	NCKAP5L	HGNC:29321	ENSG00000167566	GGGGGCCAGGGG
hsa_m5C_1932	chr12	49791402	49791403	-	ENST00000335999	C4631	m5C	C7	5'-GGGGGCCAGGGG-3'	NA	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	12	chr12:49791398-49791409	NCKAP5L	HGNC:29321	ENSG00000167566	GGGGGCCAGGGG
hsa_m5C_1933	chr6	89081271	89081272	+	ENST00000336032	C522	m5C	C7	5'-GGAGGGCGGCCGG-3'	...((....)).. ( -1.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	13	chr6:89081266-89081278	PNRC1	HGNC:17278	ENSG00000146278	GGAGGGCGGCCGG
hsa_m5C_1934	chr17	46553588	46553589	-	ENST00000336125	C4409	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	31358969	15	chr17:46553580-46553594	ARL17A	HGNC:24096	ENSG00000185829	GGAGGCUGAGGCAGG
hsa_m5C_1935	chr15	99134289	99134290	+	ENST00000336292	C6050	m5C	C13	5'-GGGCCUGGGGGGCGAGAAAGG-3'	..((((...))))........ ( -4.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	21	chr15:99134278-99134298	SYNM	HGNC:24466	ENSG00000182253	GGGCCUGGGGGGCGAGAAAGG
hsa_m5C_1936	chr14	68789986	68789987	-	ENST00000336440	C3874	m5C	C9	5'-GGCCGGGGCCCGG-3'	..((((...)))) ( -3.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	13	chr14:68789983-68789995	ZFP36L1	HGNC:1107	ENSG00000185650	GGCCGGGGCCCGG
hsa_m5C_1937	chr14	68789985	68789986	-	ENST00000336440	C3875	m5C	C10	5'-GGCCGGGGCCCGG-3'	..((((...)))) ( -3.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	13	chr14:68789983-68789995	ZFP36L1	HGNC:1107	ENSG00000185650	GGCCGGGGCCCGG
hsa_m5C_1938	chr14	68789984	68789985	-	ENST00000336440	C3876	m5C	C11	5'-GGCCGGGGCCCGG-3'	..((((...)))) ( -3.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	13	chr14:68789983-68789995	ZFP36L1	HGNC:1107	ENSG00000185650	GGCCGGGGCCCGG
hsa_m5C_1939	chr2	219286198	219286199	+	ENST00000336576	C2376	m5C	C19	5'-GGUGUUUGGUGCUGGCUCCUGG-3'	((.(((.......))).))... ( -2.50)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr2:219286181-219286202	DNAJB2	HGNC:5228	ENSG00000135924	GGUGUUUGGUGCUGGCUCCUGG
hsa_m5C_1940	chr1	23428670	23428671	-	ENST00000336689	C3943	m5C	C4	5'-GGUCUGUGGUUCCCACAGGAACAGG-3'	..(((((((...)))))))...... ( -8.20)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr1:23428650-23428674	ASAP3	HGNC:14987	ENSG00000088280	GGUCUGUGGUUCCCACAGGAACAGG
hsa_m5C_1941	chr19	1434815	1434816	+	ENST00000336761	C1422	m5C	C7	5'-GGGUCCCUCCGUGCCAGGGUCGGGGGG-3'	....(((((((.((....))))))))) (-11.60)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr19:1434810-1434836	DAZAP1	HGNC:2683	ENSG00000071626	GGGUCCCUCCGUGCCAGGGUCGGGGGG
hsa_m5C_1942	chr1	30871399	30871400	-	ENST00000336798	C4459	m5C	C8	5'-GGGGUCACAGAUCUUUUGGGGAGGGUGUGCUUGGCAGGG-3'	...((((((.((((((....)))))).))..)))).... ( -8.50)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	39	chr1:30871369-30871407	SDC3	HGNC:10660	ENSG00000162512	GGGGUCACAGAUCUUUUGGGGAGGGUGUGCUUGGCAGGG
hsa_m5C_1943	chrX	38805944	38805945	+	ENST00000336949	C4222	m5C	C3	5'-GGCCGGUGGAGG-3'	..((......)) ( -0.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	30872485	12	chrX:38805943-38805954	MID1IP1	HGNC:20715	ENSG00000165175	GGCCGGUGGAGG
hsa_m5C_1944	chrX	38805945	38805946	+	ENST00000336949	C4223	m5C	C4	5'-GGCCGGUGGAGG-3'	..((......)) ( -0.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	12	chrX:38805943-38805954	MID1IP1	HGNC:20715	ENSG00000165175	GGCCGGUGGAGG
hsa_m5C_1945	chr17	82418517	82418518	+	ENST00000337014	C201	m5C	C6	5'-GGACGCGGGCGCCAGGCCCGGGG-3'	.....(((((.....)))))... (-10.50)	loop	mRNA	HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991	30872485;38168991	23	chr17:82418513-82418535	HEXD	HGNC:26307	ENSG00000169660	GGACGCGGGCGCCAGGCCCGGGG
hsa_m5C_1946	chr10	124744071	124744072	-	ENST00000337318	C307	m5C	C16	5'-GGGCACCCCGGACGACUUGGCGAGCGCUGG-3'	.......((((.((.(((...))))))))) ( -6.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	30	chr10:124744058-124744087	FAM53B	HGNC:28968	ENSG00000189319	GGGCACCCCGGACGACUUGGCGAGCGCUGG
hsa_m5C_1947	chr2	55050209	55050210	-	ENST00000337526	C242	m5C	C5	5'-GGAGCCCGAGGACGAGGAGG-3'	....((((....)).))... ( -2.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr2:55050195-55050214	RTN4	HGNC:14085	ENSG00000115310	GGAGCCCGAGGACGAGGAGG
hsa_m5C_1948	chr2	55050208	55050209	-	ENST00000337526	C243	m5C	C6	5'-GGAGCCCGAGGACGAGGAGG-3'	....((((....)).))... ( -2.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr2:55050195-55050214	RTN4	HGNC:14085	ENSG00000115310	GGAGCCCGAGGACGAGGAGG
hsa_m5C_1949	chr2	55050207	55050208	-	ENST00000337526	C244	m5C	C7	5'-GGAGCCCGAGGACGAGGAGG-3'	....((((....)).))... ( -2.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr2:55050195-55050214	RTN4	HGNC:14085	ENSG00000115310	GGAGCCCGAGGACGAGGAGG
hsa_m5C_1950	chr2	55050201	55050202	-	ENST00000337526	C250	m5C	C13	5'-GGAGCCCGAGGACGAGGAGG-3'	....((((....)).))... ( -2.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr2:55050195-55050214	RTN4	HGNC:14085	ENSG00000115310	GGAGCCCGAGGACGAGGAGG
hsa_m5C_1951	chr22	37182183	37182184	-	ENST00000337843	C875	m5C	C20	5'-GGCCGAGGACGACUGAGGGCCUCUGGG-3'	((((..((....))...))))...... ( -7.30)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr22:37182177-37182203	C1QTNF6	HGNC:14343	ENSG00000133466	GGCCGAGGACGACUGAGGGCCUCUGGG
hsa_m5C_1952	chr22	37180348	37180349	-	ENST00000337843	C2710	m5C	C15	5'-GGGGCUGAGGUGCCCCGGGGGG-3'	(((((......)))))...... (-11.70)	loop	mRNA	HeLa	RBS-Seq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30872485	22	chr22:37180342-37180363	C1QTNF6	HGNC:14343	ENSG00000133466	GGGGCUGAGGUGCCCCGGGGGG
hsa_m5C_1953	chr1	8360321	8360322	-	ENST00000337907	C3820	m5C	C9	5'-GGCGGGACCUGGCACCUCGG-3'	..((((.........)))). ( -2.50)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	20	chr1:8360311-8360330	RERE	HGNC:9965	ENSG00000142599	GGCGGGACCUGGCACCUCGG
hsa_m5C_1954	chr16	27449873	27449874	+	ENST00000337929	C2669	m5C	C3	5'-GGCGGCCCCUGGACGAAGG-3'	.......(((......))) ( -1.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr16:27449872-27449890	IL21R	HGNC:6006	ENSG00000103522	GGCGGCCCCUGGACGAAGG
hsa_m5C_1955	chr15	85769188	85769189	-	ENST00000337975	C792	m5C	C17	5'-GGAGACCGAGGACGAGCGGGUGG-3'	.....(((........))).... ( -3.10)	loop	mRNA	HeLa,rip antibody: ALYREF;Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	23	chr15:85769183-85769205	KLHL25	HGNC:25732	ENSG00000183655	GGAGACCGAGGACGAGCGGGUGG
hsa_m5C_1956	chr17	12996606	12996607	-	ENST00000338034	C1679	m5C	C15	5'-GGAGACCAGGUGGACAGGGUCCUGGG-3'	.....(((((..........))))). ( -7.50)	loop	mRNA	HeLa,rescue;293T,Testis,HeLa,T24;293T;HeLa,siControl;HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	30872485;28418038;31061524;38168991	26	chr17:12996596-12996621	ELAC2	HGNC:14198	ENSG00000006744	GGAGACCAGGUGGACAGGGUCCUGGG
hsa_m5C_1957	chrX	54044133	54044134	-	ENST00000338154	C340	m5C	C3	5'-GGCCCGAACGGCCGGGCCGAGG-3'	((((((......)))))).... (-13.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	22	chrX:54044115-54044136	PHF8	HGNC:20672	ENSG00000172943	GGCCCGAACGGCCGGGCCGAGG
hsa_m5C_1958	chrX	54044132	54044133	-	ENST00000338154	C341	m5C	C4	5'-GGCCCGAACGGCCGGGCCGAGG-3'	((((((......)))))).... (-13.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	22	chrX:54044115-54044136	PHF8	HGNC:20672	ENSG00000172943	GGCCCGAACGGCCGGGCCGAGG
hsa_m5C_1959	chrX	54044131	54044132	-	ENST00000338154	C342	m5C	C5	5'-GGCCCGAACGGCCGGGCCGAGG-3'	((((((......)))))).... (-13.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	22	chrX:54044115-54044136	PHF8	HGNC:20672	ENSG00000172943	GGCCCGAACGGCCGGGCCGAGG
hsa_m5C_1960	chrX	54044119	54044120	-	ENST00000338154	C354	m5C	C17	5'-GGCCCGAACGGCCGGGCCGAGG-3'	((((((......)))))).... (-13.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	22	chrX:54044115-54044136	PHF8	HGNC:20672	ENSG00000172943	GGCCCGAACGGCCGGGCCGAGG
hsa_m5C_1961	chrX	54044118	54044119	-	ENST00000338154	C355	m5C	C18	5'-GGCCCGAACGGCCGGGCCGAGG-3'	((((((......)))))).... (-13.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	22	chrX:54044115-54044136	PHF8	HGNC:20672	ENSG00000172943	GGCCCGAACGGCCGGGCCGAGG
hsa_m5C_1962	chr16	30947920	30947921	+	ENST00000338343	C3628	m5C	C11	5'-GGAGUGGGGGCCGCGG-3'	...((((...)))).. ( -3.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	16	chr16:30947911-30947926	FBXL19	HGNC:25300	ENSG00000099364	GGAGUGGGGGCCGCGG
hsa_m5C_1963	chr12	68855984	68855985	-	ENST00000338356	C1831	m5C	C7	5'-GGGAGGCCAAGGUGGG-3'	((....))........ ( -1.60)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	16	chr12:68855976-68855991	CPM	HGNC:2311	ENSG00000135678	GGGAGGCCAAGGUGGG
hsa_m5C_1964	chr12	68855983	68855984	-	ENST00000338356	C1832	m5C	C8	5'-GGGAGGCCAAGGUGGG-3'	((....))........ ( -1.60)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	16	chr12:68855976-68855991	CPM	HGNC:2311	ENSG00000135678	GGGAGGCCAAGGUGGG
hsa_m5C_1965	chr1	1374328	1374329	-	ENST00000338370	C570	m5C	C5	5'-GGCCCAGCUGGAGCUGGAGGAGAUGCUGG-3'	...(((((....)))))............ ( -7.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr1:1374305-1374333	AURKAIP1	HGNC:24114	ENSG00000175756	GGCCCAGCUGGAGCUGGAGGAGAUGCUGG
hsa_m5C_1966	chr12	109166978	109166979	+	ENST00000338432	C899	m5C	C9	5'-GGGGGGAUCGGGUCAUCGAGAAG^G-3'	.......((((....))))..... ( -2.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	24	chr12:109166971-109166993;109167896-109167896	ACACB	HGNC:85	ENSG00000076555	GGGGGGAUCGGGUCAUCGAGAAGG
hsa_m5C_1967	chr1	960756	960757	+	ENST00000338591	C174	m5C	C20	5'-GGAGCACGGCAGCCCGGGGCCCGG-3'	((.((.(((....)))..)))).. ( -7.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr1:960738-960761	KLHL17	HGNC:24023	ENSG00000187961	GGAGCACGGCAGCCCGGGGCCCGG
hsa_m5C_1968	chr11	61484690	61484691	+	ENST00000338608	C510	m5C	C8	5'-GGAG^GUCCGGAAGG-3'	((....))...... ( -0.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	14	chr11:61482805-61482808;61484688-61484697	SAXO4	HGNC:28869	ENSG00000162148	GGAGGUCCGGAAGG
hsa_m5C_1969	chr1	7970923	7970924	+	ENST00000338639	C389	m5C	C5	5'-GGAGCAGGAAAACCGGAAGG-3'	............((....)) ( -0.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr1:7970920-7970939	PARK7	HGNC:16369	ENSG00000116288	GGAGCAGGAAAACCGGAAGG
hsa_m5C_1970	chr6	117482817	117482818	+	ENST00000338728	C145	m5C	C5	5'-GGCGCGGGCUGCCGGGCGGGG-3'	.((.(((....))).)).... ( -9.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038;22344696	21	chr6:117482814-117482834	DCBLD1	HGNC:21479	ENSG00000164465	GGCGCGGGCUGCCGGGCGGGG
hsa_m5C_1971	chr6	117482821	117482822	+	ENST00000338728	C149	m5C	C9	5'-GGCGCGGGCUGCCGGGCGGGG-3'	.((.(((....))).)).... ( -9.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038;22344696	21	chr6:117482814-117482834	DCBLD1	HGNC:21479	ENSG00000164465	GGCGCGGGCUGCCGGGCGGGG
hsa_m5C_1972	chr6	117482824	117482825	+	ENST00000338728	C152	m5C	C12	5'-GGCGCGGGCUGCCGGGCGGGG-3'	.((.(((....))).)).... ( -9.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038;22344696	21	chr6:117482814-117482834	DCBLD1	HGNC:21479	ENSG00000164465	GGCGCGGGCUGCCGGGCGGGG
hsa_m5C_1973	chr6	117482825	117482826	+	ENST00000338728	C153	m5C	C13	5'-GGCGCGGGCUGCCGGGCGGGG-3'	.((.(((....))).)).... ( -9.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038;22344696	21	chr6:117482814-117482834	DCBLD1	HGNC:21479	ENSG00000164465	GGCGCGGGCUGCCGGGCGGGG
hsa_m5C_1974	chr6	117482829	117482830	+	ENST00000338728	C157	m5C	C17	5'-GGCGCGGGCUGCCGGGCGGGG-3'	.((.(((....))).)).... ( -9.50)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	21	chr6:117482814-117482834	DCBLD1	HGNC:21479	ENSG00000164465	GGCGCGGGCUGCCGGGCGGGG
hsa_m5C_1975	chr16	70663962	70663963	-	ENST00000338779	C2220	m5C	C24	5'-GGGCAGCCCAUCCCCAGAGGCAGCCGGGUACCCCGGGGCAGGGG-3'	(((...)))..((((....((..(((((...))))).)).)))) (-18.30)	loop	mRNA	293T;HeLa,siControl;HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	m5C-RIP-seq:(Medium),RNA-BisSeq:(High);UBS-seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	28418038;31061524;38168991	44	chr16:70663943-70663986	MTSS2	HGNC:25094	ENSG00000132613	GGGCAGCCCAUCCCCAGAGGCAGCCGGGUACCCCGGGGCAGGGG
hsa_m5C_1976	chr16	70661817	70661818	-	ENST00000338779	C4365	m5C	C4	5'-GGGCAGUGGGUGGGCAGACCUGGG-3'	.......((((......))))... ( -4.00)	loop	mRNA	spleen	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database	NA	24	chr16:70661798-70661821	MTSS2	HGNC:25094	ENSG00000132613	GGGCAGUGGGUGGGCAGACCUGGG
hsa_m5C_1977	chr19	18781856	18781857	+	ENST00000338797	C6453	m5C	C25	5'-GGGACAGGUGGCAUGUGUUGGGGUCGGGGG-3'	..(((...((((....))))..)))..... ( -2.70)	loop	mRNA	spleen	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31061524	30	chr19:18781833-18781862	CRTC1	HGNC:16062	ENSG00000105662	GGGACAGGUGGCAUGUGUUGGGGUCGGGGG
hsa_m5C_1978	chr6	35496932	35496933	-	ENST00000338863	C147	m5C	C13	5'-GGCCCGGCGGAGCGG-3'	...(((......))) ( -2.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr6:35496931-35496945	TEAD3	HGNC:11716	ENSG00000007866	GGCCCGGCGGAGCGG
hsa_m5C_1979	chr2	173225498	173225499	+	ENST00000338983	C5532	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr2:173225488-173225502	MAP3K20	HGNC:17797	ENSG00000091436	GGAGGCUGAGGCAGG
hsa_m5C_1980	chr12	1593505	1593506	-	ENST00000339235	C1076	m5C	C13	5'-GGAUGUGGGCAUCGGGCACCUGG-3'	......((((.....)).))... ( -3.10)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	23	chr12:1593496-1593518	FBXL14	HGNC:28624	ENSG00000171823	GGAUGUGGGCAUCGGGCACCUGG
hsa_m5C_1981	chr22	45922012	45922013	-	ENST00000339464	C2301	m5C	C7	5'-GGAGACCGAGGCAGGUGG-3'	....(((......))).. ( -3.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr22:45922002-45922019	WNT7B	HGNC:12787	ENSG00000188064	GGAGACCGAGGCAGGUGG
hsa_m5C_1982	chr22	45921602	45921603	-	ENST00000339464	C2711	m5C	C6	5'-GGGGUCAGGCAGGUGGUGAGUGG-3'	.....((..((.....))..)). ( -0.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	23	chr22:45921586-45921608	WNT7B	HGNC:12787	ENSG00000188064	GGGGUCAGGCAGGUGGUGAGUGG
hsa_m5C_1983	chr22	45921598	45921599	-	ENST00000339464	C2715	m5C	C10	5'-GGGGUCAGGCAGGUGGUGAGUGG-3'	.....((..((.....))..)). ( -0.80)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	23	chr22:45921586-45921608	WNT7B	HGNC:12787	ENSG00000188064	GGGGUCAGGCAGGUGGUGAGUGG
hsa_m5C_1984	chr1	62437153	62437154	+	ENST00000339950	C106	m5C	C4	5'-GGGCGGGCGCAGAUGGGCGCCGCUCCCGGG-3'	((((((.(((......)))))))))..... (-14.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	30	chr1:62437151-62437180	USP1	HGNC:12607	ENSG00000162607	GGGCGGGCGCAGAUGGGCGCCGCUCCCGGG
hsa_m5C_1985	chr1	62437176	62437177	+	ENST00000339950	C129	m5C	C27	5'-GGGCGGGCGCAGAUGGGCGCCGCUCCCGGG-3'	((((((.(((......)))))))))..... (-14.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	30	chr1:62437151-62437180	USP1	HGNC:12607	ENSG00000162607	GGGCGGGCGCAGAUGGGCGCCGCUCCCGGG
hsa_m5C_1986	chr8	143275959	143275960	+	ENST00000340042	C364	m5C	C6	5'-GGGGGCGGGCGGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	13	chr8:143275955-143275967	GLI4	HGNC:4320	ENSG00000250571	GGGGGCGGGCGGG
hsa_m5C_1987	chr8	143275963	143275964	+	ENST00000340042	C368	m5C	C10	5'-GGGGGCGGGCGGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	13	chr8:143275955-143275967	GLI4	HGNC:4320	ENSG00000250571	GGGGGCGGGCGGG
hsa_m5C_1988	chr1	9603048	9603049	+	ENST00000340305	C1946	m5C	C7	5'-GGGAAUCUGAGCUUUUCCAAGGGUAAGGGGCCCAGGG-3'	(((((........)))))..((((.....)))).... ( -9.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	37	chr1:9603043-9603079	TMEM201	HGNC:33719	ENSG00000188807	GGGAAUCUGAGCUUUUCCAAGGGUAAGGGGCCCAGGG
hsa_m5C_1989	chr6	149724701	149724702	-	ENST00000340413	C3444	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr6:149724693-149724707	NUP43	HGNC:21182	ENSG00000120253	GGAGGCUGAGGCAGG
hsa_m5C_1990	chr6	149724695	149724696	-	ENST00000340413	C3450	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr6:149724693-149724707	NUP43	HGNC:21182	ENSG00000120253	GGAGGCUGAGGCAGG
hsa_m5C_1991	chr4	83010615	83010616	-	ENST00000340417	C208	m5C	C8	5'-GGACAAACUGGGAAAGGAAGCUGCUGG-3'	.......((((...((....)).)))) ( -0.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr4:83010597-83010623	LIN54	HGNC:25397	ENSG00000189308	GGACAAACUGGGAAAGGAAGCUGCUGG
hsa_m5C_1992	chr20	31798438	31798439	+	ENST00000340513	C2656	m5C	C9	5'-GGCAGGAGCUGGAGAAGAGAAUGG-3'	(((....))).............. ( -1.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	24	chr20:31798431-31798454	TPX2	HGNC:1249	ENSG00000088325	GGCAGGAGCUGGAGAAGAGAAUGG
hsa_m5C_1993	chr19	5917142	5917143	-	ENST00000340578	C2229	m5C	C29	5'-GGGCUCCCCAACUAUAGGCCUGGGACCCCCGCCCAGCUUGGGGGG-3'	...((((((((((...(((..(((...)))))).)).)))))))) (-19.30)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	45	chr19:5917127-5917171	RANBP3	HGNC:9850	ENSG00000031823	GGGCUCCCCAACUAUAGGCCUGGGACCCCCGCCCAGCUUGGGGGG
hsa_m5C_1994	chr22	36762932	36762933	-	ENST00000340630	C876	m5C	C18	5'-GGGCAUGGGCGCUGGGCCAGGG-3'	.......(((.....))).... ( -4.80)	loop	mRNA	293T	m5C-RIP-seq:(Medium);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database;RMVar database	31061524	22	chr22:36762929-36762950	IFT27	HGNC:18626	ENSG00000100360	GGGCAUGGGCGCUGGGCCAGGG
hsa_m5C_1995	chr19	14152142	14152143	-	ENST00000340736	C3970	m5C	C9	5'-G^GGAGCUACCGGGAACCCA^AGCACCCCUUGGGAGGCCGGG-3'	........((((...((((((.....))))))...)))). (-16.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	40	chr19:14151595-14151615;14152133-14152150;14152309-14152309	ADGRL1	HGNC:20973	ENSG00000072071	GGGAGCUACCGGGAACCCAAGCACCCCUUGGGAGGCCGGG
hsa_m5C_1996	chr19	14152141	14152142	-	ENST00000340736	C3971	m5C	C10	5'-G^GGAGCUACCGGGAACCCA^AGCACCCCUUGGGAGGCCGGG-3'	........((((...((((((.....))))))...)))). (-16.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	40	chr19:14151595-14151615;14152133-14152150;14152309-14152309	ADGRL1	HGNC:20973	ENSG00000072071	GGGAGCUACCGGGAACCCAAGCACCCCUUGGGAGGCCGGG
hsa_m5C_1997	chr5	163437759	163437760	+	ENST00000340828	C166	m5C	C18	5'-GGGGUGAGGUGAGCAGGCCCGGGG-3'	.((((...........)))).... ( -5.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	24	chr5:163437743-163437766	CCNG1	HGNC:1592	ENSG00000113328	GGGGUGAGGUGAGCAGGCCCGGGG
hsa_m5C_1998	chr5	163437760	163437761	+	ENST00000340828	C167	m5C	C19	5'-GGGGUGAGGUGAGCAGGCCCGGGG-3'	.((((...........)))).... ( -5.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	24	chr5:163437743-163437766	CCNG1	HGNC:1592	ENSG00000113328	GGGGUGAGGUGAGCAGGCCCGGGG
hsa_m5C_1999	chr5	163437761	163437762	+	ENST00000340828	C168	m5C	C20	5'-GGGGUGAGGUGAGCAGGCCCGGGG-3'	.((((...........)))).... ( -5.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	24	chr5:163437743-163437766	CCNG1	HGNC:1592	ENSG00000113328	GGGGUGAGGUGAGCAGGCCCGGGG
hsa_m5C_2000	chr7	139454167	139454168	-	ENST00000340940	C1083	m5C	C10	5'-GGGUGGGGGCCUGGCGAGG-3'	((((....))))....... ( -3.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr7:139454159-139454177	KLRG2	HGNC:24778	ENSG00000188883	GGGUGGGGGCCUGGCGAGG
hsa_m5C_2001	chr7	139454166	139454167	-	ENST00000340940	C1084	m5C	C11	5'-GGGUGGGGGCCUGGCGAGG-3'	((((....))))....... ( -3.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr7:139454159-139454177	KLRG2	HGNC:24778	ENSG00000188883	GGGUGGGGGCCUGGCGAGG
hsa_m5C_2002	chr12	57632832	57632833	-	ENST00000341156	C369	m5C	C13	5'-GGACCCUCAGGCCGGGG-3'	...((((......)))) ( -3.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	17	chr12:57632829-57632845	B4GALNT1	HGNC:4117	ENSG00000135454	GGACCCUCAGGCCGGGG
hsa_m5C_2003	chr12	57630479	57630480	-	ENST00000341156	C960	m5C	C16	5'-GGUCAGGAGGUAUACCAG^G-3'	(((..........)))... ( -0.70)	loop	mRNA	HeLa	BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	31061524	19	chr12:57630332-57630332;57630478-57630495	B4GALNT1	HGNC:4117	ENSG00000135454	GGUCAGGAGGUAUACCAGG
hsa_m5C_2004	chr14	74735614	74735615	+	ENST00000341162	C1336	m5C	C3	5'-GGCUGGAGUGCAGUGGCGUGAUCUGG-3'	..(((((..((......))..))))) ( -3.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chr14:74735613-74735638	FCF1	HGNC:20220	ENSG00000119616	GGCUGGAGUGCAGUGGCGUGAUCUGG
hsa_m5C_2005	chr14	74735622	74735623	+	ENST00000341162	C1344	m5C	C11	5'-GGCUGGAGUGCAGUGGCGUGAUCUGG-3'	..(((((..((......))..))))) ( -3.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chr14:74735613-74735638	FCF1	HGNC:20220	ENSG00000119616	GGCUGGAGUGCAGUGGCGUGAUCUGG
hsa_m5C_2006	chr14	74735628	74735629	+	ENST00000341162	C1350	m5C	C17	5'-GGCUGGAGUGCAGUGGCGUGAUCUGG-3'	..(((((..((......))..))))) ( -3.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chr14:74735613-74735638	FCF1	HGNC:20220	ENSG00000119616	GGCUGGAGUGCAGUGGCGUGAUCUGG
hsa_m5C_2007	chr14	74736310	74736311	+	ENST00000341162	C2032	m5C	C8	5'-GGGGAGGCUGAGG-3'	NA	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;22344696	13	chr14:74736304-74736316	FCF1	HGNC:20220	ENSG00000119616	GGGGAGGCUGAGG
hsa_m5C_2008	chr22	44495991	44495992	-	ENST00000341255	C2010	m5C	C4	5'-GGUCAUAGCAGGCUAAGGGUGG-3'	((((......))))........ ( -2.40)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr22:44495974-44495995	RTL6	HGNC:13343	ENSG00000188636	GGUCAUAGCAGGCUAAGGGUGG
hsa_m5C_2009	chr11	34052502	34052503	+	ENST00000341394	C224	m5C	C21	5'-GGGUUCCUCCGGGAGUGAGGCGGCCGCGGGAGCCGGGG-3'	.(((((((.(((..((...))..))).))))))).... (-17.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	38	chr11:34052483-34052520	CAPRIN1	HGNC:6743	ENSG00000135387	GGGUUCCUCCGGGAGUGAGGCGGCCGCGGGAGCCGGGG
hsa_m5C_2010	chr11	34052505	34052506	+	ENST00000341394	C227	m5C	C24	5'-GGGUUCCUCCGGGAGUGAGGCGGCCGCGGGAGCCGGGG-3'	.(((((((.(((..((...))..))).))))))).... (-17.20)	bulge	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	38	chr11:34052483-34052520	CAPRIN1	HGNC:6743	ENSG00000135387	GGGUUCCUCCGGGAGUGAGGCGGCCGCGGGAGCCGGGG
hsa_m5C_2011	chr11	34052506	34052507	+	ENST00000341394	C228	m5C	C25	5'-GGGUUCCUCCGGGAGUGAGGCGGCCGCGGGAGCCGGGG-3'	.(((((((.(((..((...))..))).))))))).... (-17.20)	bulge	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	38	chr11:34052483-34052520	CAPRIN1	HGNC:6743	ENSG00000135387	GGGUUCCUCCGGGAGUGAGGCGGCCGCGGGAGCCGGGG
hsa_m5C_2012	chr12	125027434	125027435	+	ENST00000341446	C2907	m5C	C7	5'-GGAGGCCAAGGCAGG-3'	....((....))... ( -1.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr12:125027429-125027443	BRI3BP	HGNC:14251	ENSG00000184992	GGAGGCCAAGGCAGG
hsa_m5C_2013	chr12	124993893	124993894	+	ENST00000341446	C250	m5C	C29	5'-GGGCUGCUGGCCCCGGGCGCGCAGGGGGCGCGGG-3'	(((((...)))))....(((((.....))))).. (-15.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	34	chr12:124993866-124993899	BRI3BP	HGNC:14251	ENSG00000184992	GGGCUGCUGGCCCCGGGCGCGCAGGGGGCGCGGG
hsa_m5C_2014	chr12	124993895	124993896	+	ENST00000341446	C252	m5C	C31	5'-GGGCUGCUGGCCCCGGGCGCGCAGGGGGCGCGGG-3'	(((((...)))))....(((((.....))))).. (-15.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	34	chr12:124993866-124993899	BRI3BP	HGNC:14251	ENSG00000184992	GGGCUGCUGGCCCCGGGCGCGCAGGGGGCGCGGG
hsa_m5C_2015	chr9	98087464	98087465	-	ENST00000341469	C1368	m5C	C6	5'-GGGGCCAGGACCGG-3'	((........)).. ( -2.00)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr9:98087457-98087470	TRIM14	HGNC:16283	ENSG00000106785	GGGGCCAGGACCGG
hsa_m5C_2016	chr7	66921437	66921438	+	ENST00000341567	C214	m5C	C11	5'-GGGCCCGGGGCGCGCAGCUGCCCGCCGGGGCGGG^G-3'	..((((..((((.((....)).)))).)))).... (-18.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	35	chr7:66921428-66921461;66941848-66941848	TMEM248	HGNC:25476	ENSG00000106609	GGGCCCGGGGCGCGCAGCUGCCCGCCGGGGCGGGG
hsa_m5C_2017	chr6	42102660	42102661	-	ENST00000341865	C4843	m5C	C6	5'-GGAGGCCGAGGCCGG-3'	...(((....))).. ( -4.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr6:42102652-42102666	C6orf132	HGNC:21288	ENSG00000188112	GGAGGCCGAGGCCGG
hsa_m5C_2018	chr3	101724644	101724645	+	ENST00000341893	C32	m5C	C7	5'-GGAGGACGGUUGCCUGG-3'	..(((.......))).. ( -1.40)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr3:101724639-101724655	CEP97	HGNC:26244	ENSG00000182504	GGAGGACGGUUGCCUGG
hsa_m5C_2019	chr16	28320845	28320846	+	ENST00000341901	C1983	m5C	C8	5'-GGCCCCCCGGCCGGACCGACGGCCGCGCGG-3'	..((...((((((......))))))...)) (-13.40)	loop	mRNA	Muscle	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	30	chr16:28320839-28320868	SBK1	HGNC:17699	ENSG00000188322	GGCCCCCCGGCCGGACCGACGGCCGCGCGG
hsa_m5C_2020	chr16	2599557	2599558	+	ENST00000342085	C3554	m5C	C31	5'-GGGGUGAGCUGGGCCGCACCUACCCUGGGGCCCCAGGG-3'	((((((.((...))))).))).((((((....)))))) (-17.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	38	chr16:2599528-2599565	PDPK1	HGNC:8816	ENSG00000140992	GGGGUGAGCUGGGCCGCACCUACCCUGGGGCCCCAGGG
hsa_m5C_2021	chr16	2599558	2599559	+	ENST00000342085	C3555	m5C	C32	5'-GGGGUGAGCUGGGCCGCACCUACCCUGGGGCCCCAGGG-3'	((((((.((...))))).))).((((((....)))))) (-17.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	38	chr16:2599528-2599565	PDPK1	HGNC:8816	ENSG00000140992	GGGGUGAGCUGGGCCGCACCUACCCUGGGGCCCCAGGG
hsa_m5C_2022	chr16	2599559	2599560	+	ENST00000342085	C3556	m5C	C33	5'-GGGGUGAGCUGGGCCGCACCUACCCUGGGGCCCCAGGG-3'	((((((.((...))))).))).((((((....)))))) (-17.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	38	chr16:2599528-2599565	PDPK1	HGNC:8816	ENSG00000140992	GGGGUGAGCUGGGCCGCACCUACCCUGGGGCCCCAGGG
hsa_m5C_2023	chr16	2599560	2599561	+	ENST00000342085	C3557	m5C	C34	5'-GGGGUGAGCUGGGCCGCACCUACCCUGGGGCCCCAGGG-3'	((((((.((...))))).))).((((((....)))))) (-17.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	38	chr16:2599528-2599565	PDPK1	HGNC:8816	ENSG00000140992	GGGGUGAGCUGGGCCGCACCUACCCUGGGGCCCCAGGG
hsa_m5C_2024	chrX	53546506	53546507	-	ENST00000342160	C11302	m5C	C16	5'-GGGGGGACUCUGGGACCCGGG-3'	..(((..........)))... ( -4.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	21	chrX:53546502-53546522	HUWE1	HGNC:30892	ENSG00000086758	GGGGGGACUCUGGGACCCGGG
hsa_m5C_2025	chrX	53546505	53546506	-	ENST00000342160	C11303	m5C	C17	5'-GGGGGGACUCUGGGACCCGGG-3'	..(((..........)))... ( -4.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	21	chrX:53546502-53546522	HUWE1	HGNC:30892	ENSG00000086758	GGGGGGACUCUGGGACCCGGG
hsa_m5C_2026	chrX	53546504	53546505	-	ENST00000342160	C11304	m5C	C18	5'-GGGGGGACUCUGGGACCCGGG-3'	..(((..........)))... ( -4.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	21	chrX:53546502-53546522	HUWE1	HGNC:30892	ENSG00000086758	GGGGGGACUCUGGGACCCGGG
hsa_m5C_2027	chr21	39274456	39274457	-	ENST00000342449	C1302	m5C	C6	5'-GGUAGCAGAGAUGGAACAGCACGGAUUUGG-3'	.....((((..((........))..)))). ( -2.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr21:39274433-39274462	BRWD1	HGNC:12760	ENSG00000185658	GGUAGCAGAGAUGGAACAGCACGGAUUUGG
hsa_m5C_2028	chr21	39274445	39274446	-	ENST00000342449	C1313	m5C	C17	5'-GGUAGCAGAGAUGGAACAGCACGGAUUUGG-3'	.....((((..((........))..)))). ( -2.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr21:39274433-39274462	BRWD1	HGNC:12760	ENSG00000185658	GGUAGCAGAGAUGGAACAGCACGGAUUUGG
hsa_m5C_2029	chr21	39274442	39274443	-	ENST00000342449	C1316	m5C	C20	5'-GGUAGCAGAGAUGGAACAGCACGGAUUUGG-3'	.....((((..((........))..)))). ( -2.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr21:39274433-39274462	BRWD1	HGNC:12760	ENSG00000185658	GGUAGCAGAGAUGGAACAGCACGGAUUUGG
hsa_m5C_2030	chr11	68019741	68019742	+	ENST00000342456	C575	m5C	C8	5'-GGGCGGGCCCCAGGAGACGGGG-3'	.......((((.......)))) ( -5.60)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	22	chr11:68019735-68019756	ALDH3B1	HGNC:410	ENSG00000006534	GGGCGGGCCCCAGGAGACGGGG
hsa_m5C_2031	chr11	68019742	68019743	+	ENST00000342456	C576	m5C	C9	5'-GGGCGGGCCCCAGGAGACGGGG-3'	.......((((.......)))) ( -5.60)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	22	chr11:68019735-68019756	ALDH3B1	HGNC:410	ENSG00000006534	GGGCGGGCCCCAGGAGACGGGG
hsa_m5C_2032	chr11	68018597	68018598	+	ENST00000342456	C301	m5C	C25	5'-GGUCACCCUGGCCCUCAGGAACCUCCGG-3'	(((...((((.....)))).)))..... ( -7.00)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr11:68018574-68018601	ALDH3B1	HGNC:410	ENSG00000006534	GGUCACCCUGGCCCUCAGGAACCUCCGG
hsa_m5C_2033	chr3	127672741	127672742	+	ENST00000342480	C2115	m5C	C11	5'-GGGCGGCGGGCGG-3'	..((.....)).. ( -1.70)	loop	mRNA	SNB19;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database;38168991	28418038;38168991	13	chr3:127672732-127672744	PODXL2	HGNC:17936	ENSG00000114631	GGGCGGCGGGCGG
hsa_m5C_2034	chr14	104804017	104804018	+	ENST00000342537	C2918	m5C	C41	5'-GGGUGCCAGCCUGGGAGCCCAGCGCUUCUGGGUGAUGCCCCAGGG-3'	(((.((..((((((((((.....))))))))))...))))).... (-22.40)	loop	mRNA	293T;HeLa	UBS-seq:(High);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;31061524;38168991	45	chr14:104803978-104804022	ZBTB42	HGNC:32550	ENSG00000179627	GGGUGCCAGCCUGGGAGCCCAGCGCUUCUGGGUGAUGCCCCAGGG
hsa_m5C_2035	chr20	326394	326395	+	ENST00000342665	C844	m5C	C19	5'-GGGAGGGCCUUUGGGGGGCGGG-3'	......(((((...)))))... ( -5.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	22	chr20:326377-326398	SOX12	HGNC:11198	ENSG00000177732	GGGAGGGCCUUUGGGGGGCGGG
hsa_m5C_2036	chr20	327342	327343	+	ENST00000342665	C1792	m5C	C10	5'-GGGGAGGGGCGCACCCCUUUUAUCCCCGGAGCGCUAGGG-3'	(((((((((....)))).....)))))............ (-14.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	39	chr20:327334-327372	SOX12	HGNC:11198	ENSG00000177732	GGGGAGGGGCGCACCCCUUUUAUCCCCGGAGCGCUAGGG
hsa_m5C_2037	chr7	70118199	70118200	+	ENST00000342771	C1770	m5C	C6	5'-GGCUUCCACCGGAGCAGCUCUCGGGAAAGG-3'	..(((...((((((...))).)))..))). ( -6.60)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr7:70118195-70118224	AUTS2	HGNC:14262	ENSG00000158321	GGCUUCCACCGGAGCAGCUCUCGGGAAAGG
hsa_m5C_2038	chrX	153651016	153651017	+	ENST00000342782	C2125	m5C	C7	5'-GGGGCCCACACAGCCGCUGCUACUUUGGGGGGUGGGGAAGGGG-3'	....(((......(((((.((......)).))))).....))) (-13.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	43	chrX:153651011-153651053	DUSP9	HGNC:3076	ENSG00000130829	GGGGCCCACACAGCCGCUGCUACUUUGGGGGGUGGGGAAGGGG
hsa_m5C_2039	chr3	184321986	184321987	+	ENST00000342981	C1817	m5C	C15	5'-GGAAGAAGGAGAAGCAGGAGAAGCAGG-3'	.............((.......))... ( -0.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	27	chr3:184321973-184321999	EIF4G1	HGNC:3296	ENSG00000114867	GGAAGAAGGAGAAGCAGGAGAAGCAGG
hsa_m5C_2040	chr3	184315252	184315253	+	ENST00000342981	C88	m5C	C3	5'-GGCGGCGGCAGG-3'	.((....))... ( -1.60)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	12	chr3:184315251-184315262	EIF4G1	HGNC:3296	ENSG00000114867	GGCGGCGGCAGG
hsa_m5C_2041	chr3	184315255	184315256	+	ENST00000342981	C91	m5C	C6	5'-GGCGGCGGCAGG-3'	.((....))... ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	12	chr3:184315251-184315262	EIF4G1	HGNC:3296	ENSG00000114867	GGCGGCGGCAGG
hsa_m5C_2042	chr3	184315258	184315259	+	ENST00000342981	C94	m5C	C9	5'-GGCGGCGGCAGG-3'	.((....))... ( -1.60)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	12	chr3:184315251-184315262	EIF4G1	HGNC:3296	ENSG00000114867	GGCGGCGGCAGG
hsa_m5C_2043	chr18	51078339	51078340	+	ENST00000342988	C2070	m5C	C11	5'-GGCUGGGGACCGG-3'	..((((...)))) ( -1.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	13	chr18:51078330-51078342	SMAD4	HGNC:6770	ENSG00000141646	GGCUGGGGACCGG
hsa_m5C_2044	chr2	238128803	238128804	+	ENST00000343063	C1393	m5C	C14	5'-GGGCUGGUGCCCACGCGGGAUGAGCGCGG-3'	((((....)))).((((.......)))). (-14.20)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr2:238128791-238128819	ESPNL	HGNC:27937	ENSG00000144488	GGGCUGGUGCCCACGCGGGAUGAGCGCGG
hsa_m5C_2045	chr1	203489818	203489819	+	ENST00000343110	C4236	m5C	C10	5'-GGCUGGGUGCGGUGG-3'	.((((....)))).. ( -2.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr1:203489810-203489824	PRELP	HGNC:9357	ENSG00000188783	GGCUGGGUGCGGUGG
hsa_m5C_2046	chr5	147391404	147391405	-	ENST00000343218	C4895	m5C	C4	5'-GGGCCACGGGCUUGGGUAGUGGAAAGGG-3'	...((((..((....)).))))...... ( -4.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	28	chr5:147391381-147391408	DPYSL3	HGNC:3015	ENSG00000113657	GGGCCACGGGCUUGGGUAGUGGAAAGGG
hsa_m5C_2047	chr1	93256411	93256412	+	ENST00000343253	C3919	m5C	C8	5'-GGCUGACCCGGGAGCAGG-3'	.(((........)))... ( -2.90)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	18	chr1:93256405-93256422	CCDC18	HGNC:30370	ENSG00000122483	GGCUGACCCGGGAGCAGG
hsa_m5C_2048	chr1	93256412	93256413	+	ENST00000343253	C3920	m5C	C9	5'-GGCUGACCCGGGAGCAGG-3'	.(((........)))... ( -2.90)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	18	chr1:93256405-93256422	CCDC18	HGNC:30370	ENSG00000122483	GGCUGACCCGGGAGCAGG
hsa_m5C_2049	chr1	247100102	247100103	-	ENST00000343381	C1839	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr1:247100094-247100108	ZNF669	HGNC:25736	ENSG00000188295	GGAGGCUGAGGCAGG
hsa_m5C_2050	chr1	247100096	247100097	-	ENST00000343381	C1845	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr1:247100094-247100108	ZNF669	HGNC:25736	ENSG00000188295	GGAGGCUGAGGCAGG
hsa_m5C_2051	chr16	84067803	84067804	-	ENST00000343411	C2623	m5C	C7	5'-GGUGGACAGUGAGGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	17	chr16:84067794-84067810	MBTPS1	HGNC:15456	ENSG00000140943	GGUGGACAGUGAGGAGG
hsa_m5C_2052	chr6	26055999	26056000	-	ENST00000343677	C471	m5C	C10	5'-GGCGGCUGGCGG-3'	.((.....)).. ( -1.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	30526041	12	chr6:26055998-26056009	H1-2	HGNC:4716	ENSG00000187837	GGCGGCUGGCGG
hsa_m5C_2053	chr12	95790560	95790561	-	ENST00000343702	C204	m5C	C16	5'-GGCCGGCUAUGGUCCCGG-3'	(((((....))))).... ( -4.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;31061524	18	chr12:95790559-95790576	NTN4	HGNC:13658	ENSG00000074527	GGCCGGCUAUGGUCCCGG
hsa_m5C_2054	chr10	100482271	100482272	+	ENST00000343737	C672	m5C	C15	5'-GGCUGGCCGCAAG^GCGG-3'	.....(((....))).. ( -5.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr10:100482042-100482054;100482271-100482274	WNT8B	HGNC:12789	ENSG00000075290	GGCUGGCCGCAAGGCGG
hsa_m5C_2055	chr20	37147845	37147846	-	ENST00000343811	C1206	m5C	C5	5'-GGACCCACAGGAAAAGGUGGCUGAGGAGG-3'	....((((........))))......... ( -4.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	29	chr20:37147822-37147850	MROH8	HGNC:16125	ENSG00000101353	GGACCCACAGGAAAAGGUGGCUGAGGAGG
hsa_m5C_2056	chr1	6223359	6223360	-	ENST00000343813	C2628	m5C	C7	5'-GGGAGGCCAAGGCGG-3'	.....((....)).. ( -1.70)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	15	chr1:6223352-6223366	ICMT	HGNC:5350	ENSG00000116237	GGGAGGCCAAGGCGG
hsa_m5C_2057	chr1	6235894	6235895	-	ENST00000343813	C70	m5C	C12	5'-GGGCUGCGCGGCGCGGGCUCCGCCGG-3'	.(((.((.((...)).))...))).. ( -8.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr1:6235881-6235906	ICMT	HGNC:5350	ENSG00000116237	GGGCUGCGCGGCGCGGGCUCCGCCGG
hsa_m5C_2058	chr6	108561523	108561524	+	ENST00000343882	C620	m5C	C14	5'-GGCACCCGGAGGGCAAG-3'	.((.((....))))... ( -3.00)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr6:108561511-108561527	FOXO3	HGNC:3821	ENSG00000118689	GGCACCCGGAGGGCAAG
hsa_m5C_2059	chr2	27384697	27384698	-	ENST00000344034	C969	m5C	C3	5'-GGCGGAGGAAGAAGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr2:27384684-27384700	PPM1G	HGNC:9278	ENSG00000115241	GGCGGAGGAAGAAGAGG
hsa_m5C_2060	chr19	55386637	55386638	+	ENST00000344063	C192	m5C	C4	5'-GGGCGUGGAGCCGG-3'	.(((.....))).. ( -4.90)	bulge	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	14	chr19:55386635-55386648	RPL28	HGNC:10330	ENSG00000108107	GGGCGUGGAGCCGG
hsa_m5C_2061	chr19	55386645	55386646	+	ENST00000344063	C200	m5C	C12	5'-GGGCGUGGAGCCGG-3'	.(((.....))).. ( -4.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	14	chr19:55386635-55386648	RPL28	HGNC:10330	ENSG00000108107	GGGCGUGGAGCCGG
hsa_m5C_2062	chr5	14487775	14487776	+	ENST00000344204	C7532	m5C	C11	5'-GGCGCGGCCCCCGAGGCCGG-3'	....(((((.....))))). ( -9.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr5:14487766-14487785	TRIO	HGNC:12303	ENSG00000038382	GGCGCGGCCCCCGAGGCCGG
hsa_m5C_2063	chr5	14487776	14487777	+	ENST00000344204	C7533	m5C	C12	5'-GGCGCGGCCCCCGAGGCCGG-3'	....(((((.....))))). ( -9.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr5:14487766-14487785	TRIO	HGNC:12303	ENSG00000038382	GGCGCGGCCCCCGAGGCCGG
hsa_m5C_2064	chr7	6590217	6590218	+	ENST00000344417	C198	m5C	C7	5'-GGGUAGCGGCGCAGUCCCGGGCCCCGG-3'	((((..(((.......))).))))... ( -8.40)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	27	chr7:6590212-6590238	INTS15	HGNC:21702	ENSG00000146576	GGGUAGCGGCGCAGUCCCGGGCCCCGG
hsa_m5C_2065	chr7	6590232	6590233	+	ENST00000344417	C213	m5C	C22	5'-GGGUAGCGGCGCAGUCCCGGGCCCCGG-3'	((((..(((.......))).))))... ( -8.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr7:6590212-6590238	INTS15	HGNC:21702	ENSG00000146576	GGGUAGCGGCGCAGUCCCGGGCCCCGG
hsa_m5C_2066	chr2	26780316	26780317	+	ENST00000344420	C2988	m5C	C4	5'-GGACCUGGGGGACCCCCAGG-3'	...(((((((...))))))) (-12.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr2:26780314-26780333	SLC35F6	HGNC:26055	ENSG00000213699	GGACCUGGGGGACCCCCAGG
hsa_m5C_2067	chr2	26780317	26780318	+	ENST00000344420	C2989	m5C	C5	5'-GGACCUGGGGGACCCCCAGG-3'	...(((((((...))))))) (-12.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr2:26780314-26780333	SLC35F6	HGNC:26055	ENSG00000213699	GGACCUGGGGGACCCCCAGG
hsa_m5C_2068	chr2	26780326	26780327	+	ENST00000344420	C2998	m5C	C14	5'-GGACCUGGGGGACCCCCAGG-3'	...(((((((...))))))) (-12.50)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr2:26780314-26780333	SLC35F6	HGNC:26055	ENSG00000213699	GGACCUGGGGGACCCCCAGG
hsa_m5C_2069	chr2	26780327	26780328	+	ENST00000344420	C2999	m5C	C15	5'-GGACCUGGGGGACCCCCAGG-3'	...(((((((...))))))) (-12.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr2:26780314-26780333	SLC35F6	HGNC:26055	ENSG00000213699	GGACCUGGGGGACCCCCAGG
hsa_m5C_2070	chr2	26780328	26780329	+	ENST00000344420	C3000	m5C	C16	5'-GGACCUGGGGGACCCCCAGG-3'	...(((((((...))))))) (-12.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr2:26780314-26780333	SLC35F6	HGNC:26055	ENSG00000213699	GGACCUGGGGGACCCCCAGG
hsa_m5C_2071	chr2	26780329	26780330	+	ENST00000344420	C3001	m5C	C17	5'-GGACCUGGGGGACCCCCAGG-3'	...(((((((...))))))) (-12.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr2:26780314-26780333	SLC35F6	HGNC:26055	ENSG00000213699	GGACCUGGGGGACCCCCAGG
hsa_m5C_2072	chr7	73433943	73433944	+	ENST00000344575	C167	m5C	C16	5'-GGGCAGGCACCGGGGCGCGGG-3'	.........(((.....))). ( -3.80)	loop	mRNA	293T;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	21	chr7:73433929-73433949	FZD9	HGNC:4047	ENSG00000188763	GGGCAGGCACCGGGGCGCGGG
hsa_m5C_2073	chr7	73433945	73433946	+	ENST00000344575	C169	m5C	C18	5'-GGGCAGGCACCGGGGCGCGGG-3'	.........(((.....))). ( -3.80)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	21	chr7:73433929-73433949	FZD9	HGNC:4047	ENSG00000188763	GGGCAGGCACCGGGGCGCGGG
hsa_m5C_2074	chr14	23645291	23645292	+	ENST00000344777	C1331	m5C	C12	5'-GGUCCCAGGCCCAGGAGCCUGAGG-3'	...(((((((......))))).)) ( -9.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	24	chr14:23645281-23645304	DHRS2	HGNC:18349	ENSG00000100867	GGUCCCAGGCCCAGGAGCCUGAGG
hsa_m5C_2075	chr1	222664010	222664011	+	ENST00000344922	C5290	m5C	C20	5'-GGCAAG^GUUAAUAUGGCUCCAAAAGG-3'	((...(((((...)))))))...... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chr1:222662327-222662332;222663998-222664017	MIA3	HGNC:24008	ENSG00000154305	GGCAAGGUUAAUAUGGCUCCAAAAGG
hsa_m5C_2076	chr1	222618128	222618129	+	ENST00000344922	C33	m5C	C17	5'-GGCUGCGGCGCCUGGGCUGCUCGUCUGG-3'	(((.(((((......)))))..)))... (-11.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr1:222618113-222618140	MIA3	HGNC:24008	ENSG00000154305	GGCUGCGGCGCCUGGGCUGCUCGUCUGG
hsa_m5C_2077	chr14	32077344	32077345	+	ENST00000345122	C42	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969	11	chr14:32077340-32077350	ARHGAP5	HGNC:675	ENSG00000100852	GGCGGCGGCGG
hsa_m5C_2078	chr14	32077347	32077348	+	ENST00000345122	C45	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	11	chr14:32077340-32077350	ARHGAP5	HGNC:675	ENSG00000100852	GGCGGCGGCGG
hsa_m5C_2079	chr21	44769537	44769538	-	ENST00000345496	C2409	m5C	C3	5'-GGCGUGGUGGCGG-3'	.((......)).. ( -2.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	13	chr21:44769528-44769540	UBE2G2	HGNC:12483	ENSG00000184787	GGCGUGGUGGCGG
hsa_m5C_2080	chr6	156779124	156779125	+	ENST00000346085	C2371	m5C	C6	5'-GGCGGCGGGGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	11	chr6:156779120-156779130	ARID1B	HGNC:18040	ENSG00000049618	GGCGGCGGGGG
hsa_m5C_2081	chr11	62646594	62646595	-	ENST00000346178	C21	m5C	C3	5'-GGCGGCGGUAGCGG-3'	....((....)).. ( -1.70)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	14	chr11:62646584-62646597	GANAB	HGNC:4138	ENSG00000089597	GGCGGCGGUAGCGG
hsa_m5C_2082	chr11	70436305	70436306	+	ENST00000346329	C2994	m5C	C5	5'-GGAGCCGGGAGGCUGG-3'	..((((....)))).. ( -6.20)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	16	chr11:70436302-70436317	CTTN	HGNC:3338	ENSG00000085733	GGAGCCGGGAGGCUGG
hsa_m5C_2083	chr6	20491452	20491453	+	ENST00000346618	C2775	m5C	C11	5'-GGAGGGGGAGCUUGG-3'	.(((......))).. ( -0.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr6:20491443-20491457	E2F3	HGNC:3115	ENSG00000112242	GGAGGGGGAGCUUGG
hsa_m5C_2084	chr6	20402606	20402607	+	ENST00000346618	C729	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr6:20402605-20402615	E2F3	HGNC:3115	ENSG00000112242	GGCGGCGGCGG
hsa_m5C_2085	chr6	20402609	20402610	+	ENST00000346618	C732	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr6:20402605-20402615	E2F3	HGNC:3115	ENSG00000112242	GGCGGCGGCGG
hsa_m5C_2086	chr6	20402612	20402613	+	ENST00000346618	C735	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	11	chr6:20402605-20402615	E2F3	HGNC:3115	ENSG00000112242	GGCGGCGGCGG
hsa_m5C_2087	chr21	26022000	26022001	-	ENST00000346798	C854	m5C	C15	5'-GGAGGAAGAAGUGGCUGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr21:26021996-26022015	APP	HGNC:620	ENSG00000142192	GGAGGAAGAAGUGGCUGAGG
hsa_m5C_2088	chr21	26051028	26051029	-	ENST00000346798	C783	m5C	C8	5'-GGUGGGGCGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	10	chr21:26051027-26051036	APP	HGNC:620	ENSG00000142192	GGUGGGGCGG
hsa_m5C_2089	chr15	40662679	40662680	+	ENST00000346991	C7911	m5C	C3	5'-GGCUGGGUGCGGUGG-3'	.((((....)))).. ( -2.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr15:40662678-40662692	KNL1	HGNC:24054	ENSG00000137812	GGCUGGGUGCGGUGG
hsa_m5C_2090	chr15	40662686	40662687	+	ENST00000346991	C7918	m5C	C10	5'-GGCUGGGUGCGGUGG-3'	.((((....)))).. ( -2.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr15:40662678-40662692	KNL1	HGNC:24054	ENSG00000137812	GGCUGGGUGCGGUGG
hsa_m5C_2091	chr21	41279495	41279496	+	ENST00000347667	C5742	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr21:41279491-41279505	BACE2	HGNC:934	ENSG00000182240	GGAGGCUGAGGCAGG
hsa_m5C_2092	chr21	41279501	41279502	+	ENST00000347667	C5748	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr21:41279491-41279505	BACE2	HGNC:934	ENSG00000182240	GGAGGCUGAGGCAGG
hsa_m5C_2093	chr8	144138010	144138011	+	ENST00000347708	C238	m5C	C3	5'-GGCGGGGCAGG-3'	NA	loop	mRNA	HeLa	m5C-RIP-seq:(Medium)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	NA	11	chr8:144138009-144138019	HGH1	HGNC:24161	ENSG00000235173	GGCGGGGCAGG
hsa_m5C_2094	chr11	803576	803577	-	ENST00000347755	C434	m5C	C9	5'-GGGCAACGCCGGGACACACUGGGUGCCUGUCUCCGGG-3'	((((.((.((((......))))))))))......... (-12.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;31061524	37	chr11:803549-803585	PIDD1	HGNC:16491	ENSG00000177595	GGGCAACGCCGGGACACACUGGGUGCCUGUCUCCGGG
hsa_m5C_2095	chr7	157139172	157139173	+	ENST00000348165	C248	m5C	C4	5'-GGGCCGGGCGGGCGGG-3'	..(((.....)))... ( -5.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969;28418038	16	chr7:157139170-157139185	UBE3C	HGNC:16803	ENSG00000009335	GGGCCGGGCGGGCGGG
hsa_m5C_2096	chr7	157139173	157139174	+	ENST00000348165	C249	m5C	C5	5'-GGGCCGGGCGGGCGGG-3'	..(((.....)))... ( -5.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	16	chr7:157139170-157139185	UBE3C	HGNC:16803	ENSG00000009335	GGGCCGGGCGGGCGGG
hsa_m5C_2097	chr7	157139177	157139178	+	ENST00000348165	C253	m5C	C9	5'-GGGCCGGGCGGGCGGG-3'	..(((.....)))... ( -5.00)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	16	chr7:157139170-157139185	UBE3C	HGNC:16803	ENSG00000009335	GGGCCGGGCGGGCGGG
hsa_m5C_2098	chr7	157139181	157139182	+	ENST00000348165	C257	m5C	C13	5'-GGGCCGGGCGGGCGGG-3'	..(((.....)))... ( -5.00)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	16	chr7:157139170-157139185	UBE3C	HGNC:16803	ENSG00000009335	GGGCCGGGCGGGCGGG
hsa_m5C_2099	chr2	160493667	160493668	-	ENST00000348849	C140	m5C	C4	5'-GGGCUCCGGGAGGAAACUCCUUGGGAGCGCCCUGUCCGGG-3'	..((((((((((....)))))..))))).(((.....))) (-18.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	40	chr2:160493632-160493671	RBMS1	HGNC:9907	ENSG00000153250	GGGCUCCGGGAGGAAACUCCUUGGGAGCGCCCUGUCCGGG
hsa_m5C_2100	chr2	160493664	160493665	-	ENST00000348849	C143	m5C	C7	5'-GGGCUCCGGGAGGAAACUCCUUGGGAGCGCCCUGUCCGGG-3'	..((((((((((....)))))..))))).(((.....))) (-18.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	40	chr2:160493632-160493671	RBMS1	HGNC:9907	ENSG00000153250	GGGCUCCGGGAGGAAACUCCUUGGGAGCGCCCUGUCCGGG
hsa_m5C_2101	chr19	8486218	8486219	+	ENST00000348943	C1906	m5C	C4	5'-GGGCCCGGCCCUGGGCGCUGG-3'	(((((((....))))).)).. ( -8.10)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	21	chr19:8486216-8486236	HNRNPM	HGNC:5046	ENSG00000099783	GGGCCCGGCCCUGGGCGCUGG
hsa_m5C_2102	chr19	8486219	8486220	+	ENST00000348943	C1907	m5C	C5	5'-GGGCCCGGCCCUGGGCGCUGG-3'	(((((((....))))).)).. ( -8.10)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	21	chr19:8486216-8486236	HNRNPM	HGNC:5046	ENSG00000099783	GGGCCCGGCCCUGGGCGCUGG
hsa_m5C_2103	chr19	8486220	8486221	+	ENST00000348943	C1908	m5C	C6	5'-GGGCCCGGCCCUGGGCGCUGG-3'	(((((((....))))).)).. ( -8.10)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	21	chr19:8486216-8486236	HNRNPM	HGNC:5046	ENSG00000099783	GGGCCCGGCCCUGGGCGCUGG
hsa_m5C_2104	chr12	114674655	114674656	-	ENST00000349155	C2194	m5C	C11	5'-GGACAGCGGGCGGCUGG-3'	...((((.....)))). ( -5.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	17	chr12:114674650-114674666	TBX3	HGNC:11602	ENSG00000135111	GGACAGCGGGCGGCUGG
hsa_m5C_2105	chr11	66476108	66476109	+	ENST00000349459	C1564	m5C	C5	5'-GGGGCCUGGCUUACCGG-3'	.....((((....)))) ( -2.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr11:66476105-66476121	PELI3	HGNC:30010	ENSG00000174516	GGGGCCUGGCUUACCGG
hsa_m5C_2106	chr1	45607697	45607698	+	ENST00000350030	C893	m5C	C16	5'-GGAGGUCAGGAGAAGCAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	19	chr1:45607683-45607701	NASP	HGNC:7644	ENSG00000132780	GGAGGUCAGGAGAAGCAGG
hsa_m5C_2107	chr7	99396211	99396212	-	ENST00000350498	C1065	m5C	C36	5'-GGGCUAUCAUCUGGGAGCCUGUGCCCCUGGGUCCUCGAGGG-3'	(((((.((....)).)))))....((((.((...)).)))) (-12.60)	loop	mRNA	heart,Muscle,Testis,HeLa;HeLa,siControl;HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	30872485;28418038;31061524	41	chr7:99396207-99396247	PDAP1	HGNC:14634	ENSG00000106244	GGGCUAUCAUCUGGGAGCCUGUGCCCCUGGGUCCUCGAGGG
hsa_m5C_2108	chr5	80076870	80076871	+	ENST00000350881	C2099	m5C	C23	5'-GGACAG^UGAUGGAGAUGGGCACCAGG-3'	.........(((.........))).. ( -0.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr5:80073322-80073327;80076855-80076874	THBS4	HGNC:11788	ENSG00000113296	GGACAGUGAUGGAGAUGGGCACCAGG
hsa_m5C_2109	chr19	37633602	37633603	-	ENST00000351218	C3496	m5C	C6	5'-GGAGGCCGGUGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969	12	chr19:37633597-37633608	ZFP30	HGNC:29555	ENSG00000120784	GGAGGCCGGUGG
hsa_m5C_2110	chr19	37633601	37633602	-	ENST00000351218	C3497	m5C	C7	5'-GGAGGCCGGUGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	12	chr19:37633597-37633608	ZFP30	HGNC:29555	ENSG00000120784	GGAGGCCGGUGG
hsa_m5C_2111	chr19	37632934	37632935	-	ENST00000351218	C4164	m5C	C3	5'-GGCCUCCCAAGGUGCUGGGAUUACAGG-3'	....(((((......)))))....... ( -6.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr19:37632911-37632937	ZFP30	HGNC:29555	ENSG00000120784	GGCCUCCCAAGGUGCUGGGAUUACAGG
hsa_m5C_2112	chr19	37632933	37632934	-	ENST00000351218	C4165	m5C	C4	5'-GGCCUCCCAAGGUGCUGGGAUUACAGG-3'	....(((((......)))))....... ( -6.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr19:37632911-37632937	ZFP30	HGNC:29555	ENSG00000120784	GGCCUCCCAAGGUGCUGGGAUUACAGG
hsa_m5C_2113	chr19	37632931	37632932	-	ENST00000351218	C4167	m5C	C6	5'-GGCCUCCCAAGGUGCUGGGAUUACAGG-3'	....(((((......)))))....... ( -6.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr19:37632911-37632937	ZFP30	HGNC:29555	ENSG00000120784	GGCCUCCCAAGGUGCUGGGAUUACAGG
hsa_m5C_2114	chr19	37632930	37632931	-	ENST00000351218	C4168	m5C	C7	5'-GGCCUCCCAAGGUGCUGGGAUUACAGG-3'	....(((((......)))))....... ( -6.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr19:37632911-37632937	ZFP30	HGNC:29555	ENSG00000120784	GGCCUCCCAAGGUGCUGGGAUUACAGG
hsa_m5C_2115	chr19	37632929	37632930	-	ENST00000351218	C4169	m5C	C8	5'-GGCCUCCCAAGGUGCUGGGAUUACAGG-3'	....(((((......)))))....... ( -6.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr19:37632911-37632937	ZFP30	HGNC:29555	ENSG00000120784	GGCCUCCCAAGGUGCUGGGAUUACAGG
hsa_m5C_2116	chr19	37632922	37632923	-	ENST00000351218	C4176	m5C	C15	5'-GGCCUCCCAAGGUGCUGGGAUUACAGG-3'	....(((((......)))))....... ( -6.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr19:37632911-37632937	ZFP30	HGNC:29555	ENSG00000120784	GGCCUCCCAAGGUGCUGGGAUUACAGG
hsa_m5C_2117	chr19	37632913	37632914	-	ENST00000351218	C4185	m5C	C24	5'-GGCCUCCCAAGGUGCUGGGAUUACAGG-3'	....(((((......)))))....... ( -6.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr19:37632911-37632937	ZFP30	HGNC:29555	ENSG00000120784	GGCCUCCCAAGGUGCUGGGAUUACAGG
hsa_m5C_2118	chr15	65422840	65422841	-	ENST00000352385	C107	m5C	C11	5'-GGACGCCGGCCGCGGCCGCGG-3'	...(((.(((....)))))). ( -9.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr15:65422831-65422851	IGDCC4	HGNC:13770	ENSG00000103742	GGACGCCGGCCGCGGCCGCGG
hsa_m5C_2119	chr20	35655274	35655275	-	ENST00000352393	C250	m5C	C10	5'-GGCGGGGACCAUGG-3'	((......)).... ( -0.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	14	chr20:35655271-35655284	CPNE1	HGNC:2314	ENSG00000214078	GGCGGGGACCAUGG
hsa_m5C_2120	chr3	38483243	38483244	+	ENST00000352511	C1884	m5C	C7	5'-GGAGGUCGGUCAACGG-3'	......((.....)). ( -0.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr3:38483238-38483253	ACVR2B	HGNC:174	ENSG00000114739	GGAGGUCGGUCAACGG
hsa_m5C_2121	chr3	38486973	38486974	+	ENST00000352511	C5614	m5C	C25	5'-GGCCUGGCAUAAGCUGGGUUUUCUCCUGG-3'	.(((((((....))))))).......... ( -9.20)	loop	mRNA	293T;HeLa	UBS-seq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;38168991	31061524;38168991	29	chr3:38486950-38486978	ACVR2B	HGNC:174	ENSG00000114739	GGCCUGGCAUAAGCUGGGUUUUCUCCUGG
hsa_m5C_2122	chr16	19503373	19503374	-	ENST00000353258	C1226	m5C	C14	5'-GGCCCUGGGGAAUCAGG-3'	...(((((....))))) ( -4.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	17	chr16:19503371-19503387	GDE1	HGNC:29644	ENSG00000006007	GGCCCUGGGGAAUCAGG
hsa_m5C_2123	chr18	80159106	80159107	-	ENST00000353265	C1961	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr18:80159098-80159112	PARD6G	HGNC:16076	ENSG00000178184	GGAGGCUGAGGCAGG
hsa_m5C_2124	chr18	80159100	80159101	-	ENST00000353265	C1967	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr18:80159098-80159112	PARD6G	HGNC:16076	ENSG00000178184	GGAGGCUGAGGCAGG
hsa_m5C_2125	chr17	17797462	17797463	+	ENST00000353383	C4999	m5C	C13	5'-GGAGGAGCUGGGCCUGG-3'	..(((.......))).. ( -1.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr17:17797451-17797467	RAI1	HGNC:9834	ENSG00000108557	GGAGGAGCUGGGCCUGG
hsa_m5C_2126	chr17	17681692	17681693	+	ENST00000353383	C236	m5C	C11	5'-GGCCGCGGGCCGGCCGG-3'	(((((.....))))).. ( -9.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr17:17681683-17681699	RAI1	HGNC:9834	ENSG00000108557	GGCCGCGGGCCGGCCGG
hsa_m5C_2127	chr5	134152659	134152660	-	ENST00000353411	C5661	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Muscle	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr5:134152651-134152665	SKP1	HGNC:10899	ENSG00000113558	GGAGGCUGAGGCAGG
hsa_m5C_2128	chr5	134152653	134152654	-	ENST00000353411	C5667	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Muscle	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr5:134152651-134152665	SKP1	HGNC:10899	ENSG00000113558	GGAGGCUGAGGCAGG
hsa_m5C_2129	chr12	120762844	120762845	-	ENST00000353487	C3800	m5C	C6	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr12:120762836-120762850	SPPL3	HGNC:30424	ENSG00000157837	GGAGGCCGAGGCAGG
hsa_m5C_2130	chr12	120762838	120762839	-	ENST00000353487	C3806	m5C	C12	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr12:120762836-120762850	SPPL3	HGNC:30424	ENSG00000157837	GGAGGCCGAGGCAGG
hsa_m5C_2131	chr12	120904043	120904044	-	ENST00000353487	C315	m5C	C25	5'-GGGGCCCAGGGAGCGGGGCCGCUUCGG-3'	..(((((........)))))....... (-10.80)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;293T;HeLa,siControl;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	28418038;31061524;38168991	27	chr12:120904042-120904068	SPPL3	HGNC:30424	ENSG00000157837	GGGGCCCAGGGAGCGGGGCCGCUUCGG
hsa_m5C_2132	chr9	35733279	35733280	+	ENST00000353704	C450	m5C	C17	5'-GGAGGAGCUGGCAGAGCAG^G-3'	......(((.....)))... ( -2.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr9:35733264-35733282;35733396-35733396	CREB3	HGNC:2347	ENSG00000107175	GGAGGAGCUGGCAGAGCAGG
hsa_m5C_2133	chr7	100857065	100857066	+	ENST00000354161	C812	m5C	C12	5'-GGCUGUGGGGCCGAGG-3'	((((....)))).... ( -6.00)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr7:100857055-100857070	SLC12A9	HGNC:17435	ENSG00000146828	GGCUGUGGGGCCGAGG
hsa_m5C_2134	chr7	100856961	100856962	+	ENST00000354161	C708	m5C	C19	5'-GGGCCUUGUGGGUGGGGUCUGCACCCUGGG-3'	...(((...(((((.......))))).))) ( -9.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr7:100856944-100856973	SLC12A9	HGNC:17435	ENSG00000146828	GGGCCUUGUGGGUGGGGUCUGCACCCUGGG
hsa_m5C_2135	chr15	34231842	34231843	-	ENST00000354181	C6013	m5C	C6	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	15	chr15:34231834-34231848	SLC12A6	HGNC:10914	ENSG00000140199	GGAGGCCGAGGCAGG
hsa_m5C_2136	chr15	34231841	34231842	-	ENST00000354181	C6014	m5C	C7	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	15	chr15:34231834-34231848	SLC12A6	HGNC:10914	ENSG00000140199	GGAGGCCGAGGCAGG
hsa_m5C_2137	chr15	34231836	34231837	-	ENST00000354181	C6019	m5C	C12	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	15	chr15:34231834-34231848	SLC12A6	HGNC:10914	ENSG00000140199	GGAGGCCGAGGCAGG
hsa_m5C_2138	chr15	99566000	99566001	+	ENST00000354410	C302	m5C	C27	5'-GGUGUGGGGAUCCGUGCGCGGAUGUCCCGG-3'	....((((((((((....))))).))))). (-12.00)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr15:99565975-99566004	MEF2A	HGNC:6993	ENSG00000068305	GGUGUGGGGAUCCGUGCGCGGAUGUCCCGG
hsa_m5C_2139	chr5	151101274	151101275	-	ENST00000354546	C2320	m5C	C3	5'-GGCCAUCGAGGGCCCAGCACGGCUGAGCGG-3'	((((......))))((((...))))..... (-10.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	30	chr5:151101248-151101277	ANXA6	HGNC:544	ENSG00000197043	GGCCAUCGAGGGCCCAGCACGGCUGAGCGG
hsa_m5C_2140	chr5	151101273	151101274	-	ENST00000354546	C2321	m5C	C4	5'-GGCCAUCGAGGGCCCAGCACGGCUGAGCGG-3'	((((......))))((((...))))..... (-10.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	30	chr5:151101248-151101277	ANXA6	HGNC:544	ENSG00000197043	GGCCAUCGAGGGCCCAGCACGGCUGAGCGG
hsa_m5C_2141	chr6	111873126	111873127	-	ENST00000354650	C326	m5C	C14	5'-GGGAGGGAUUCGGCCGCCGGGCCGGG-3'	.........((((((....)))))). (-11.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	26	chr6:111873115-111873140	FYN	HGNC:4037	ENSG00000010810	GGGAGGGAUUCGGCCGCCGGGCCGGG
hsa_m5C_2142	chr6	111873125	111873126	-	ENST00000354650	C327	m5C	C15	5'-GGGAGGGAUUCGGCCGCCGGGCCGGG-3'	.........((((((....)))))). (-11.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	26	chr6:111873115-111873140	FYN	HGNC:4037	ENSG00000010810	GGGAGGGAUUCGGCCGCCGGGCCGGG
hsa_m5C_2143	chr6	111873123	111873124	-	ENST00000354650	C329	m5C	C17	5'-GGGAGGGAUUCGGCCGCCGGGCCGGG-3'	.........((((((....)))))). (-11.20)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	26	chr6:111873115-111873140	FYN	HGNC:4037	ENSG00000010810	GGGAGGGAUUCGGCCGCCGGGCCGGG
hsa_m5C_2144	chr6	111873122	111873123	-	ENST00000354650	C330	m5C	C18	5'-GGGAGGGAUUCGGCCGCCGGGCCGGG-3'	.........((((((....)))))). (-11.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	26	chr6:111873115-111873140	FYN	HGNC:4037	ENSG00000010810	GGGAGGGAUUCGGCCGCCGGGCCGGG
hsa_m5C_2145	chr1	1293560	1293561	-	ENST00000354700	C2623	m5C	C4	5'-GGGCCGGGCAGGCCGGG-3'	.((((.....))))... ( -8.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	17	chr1:1293548-1293564	ACAP3	HGNC:16754	ENSG00000131584	GGGCCGGGCAGGCCGGG
hsa_m5C_2146	chr1	1293559	1293560	-	ENST00000354700	C2624	m5C	C5	5'-GGGCCGGGCAGGCCGGG-3'	.((((.....))))... ( -8.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	17	chr1:1293548-1293564	ACAP3	HGNC:16754	ENSG00000131584	GGGCCGGGCAGGCCGGG
hsa_m5C_2147	chr1	1293555	1293556	-	ENST00000354700	C2628	m5C	C9	5'-GGGCCGGGCAGGCCGGG-3'	.((((.....))))... ( -8.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	17	chr1:1293548-1293564	ACAP3	HGNC:16754	ENSG00000131584	GGGCCGGGCAGGCCGGG
hsa_m5C_2148	chr1	51878706	51878707	-	ENST00000354831	C99	m5C	C6	5'-GGCUGCGGCAGCACCAGGGCCGG-3'	((((..((.....))..)))).. ( -8.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr1:51878690-51878712	NRDC	HGNC:7995	ENSG00000078618	GGCUGCGGCAGCACCAGGGCCGG
hsa_m5C_2149	chr15	75352350	75352351	+	ENST00000355059	C1039	m5C	C4	5'-GGCCCGCUCGGUCCUGGAGG-3'	((((.....))))....... ( -3.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr15:75352348-75352367	NEIL1	HGNC:18448	ENSG00000140398	GGCCCGCUCGGUCCUGGAGG
hsa_m5C_2150	chr2	24360493	24360494	-	ENST00000355123	C43	m5C	C15	5'-GGCUGAGGCGGCGCCGG-3'	(((.........))).. ( -3.40)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr2:24360492-24360508	ITSN2	HGNC:6184	ENSG00000198399	GGCUGAGGCGGCGCCGG
hsa_m5C_2151	chr14	22834598	22834599	+	ENST00000355151	C680	m5C	C6	5'-GGAGGCUGAGGCGG-3'	....((....)).. ( -0.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	22344696	14	chr14:22834594-22834607	MRPL52	HGNC:16655	ENSG00000172590	GGAGGCUGAGGCGG
hsa_m5C_2152	chr22	41544174	41544175	-	ENST00000355209	C296	m5C	C20	5'-GGGACGGGACCAAGGGGCUCGGG-3'	....((((.((....)))))).. ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	23	chr22:41544172-41544194	POLR3H	HGNC:30349	ENSG00000100413	GGGACGGGACCAAGGGGCUCGGG
hsa_m5C_2153	chr17	4894071	4894072	+	ENST00000355280	C2893	m5C	C5	5'-GGGGCGGCACCAUGG-3'	.((......)).... ( -1.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	15	chr17:4894068-4894082	MINK1	HGNC:17565	ENSG00000141503	GGGGCGGCACCAUGG
hsa_m5C_2154	chr19	3557111	3557112	-	ENST00000355415	C475	m5C	C11	5'-GGCCUGGCACCUGGUCG^G-3'	((((........)))).. ( -5.60)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr19:3551194-3551194;3557106-3557122	MFSD12	HGNC:28299	ENSG00000161091	GGCCUGGCACCUGGUCGG
hsa_m5C_2155	chr19	3557420	3557421	-	ENST00000355415	C166	m5C	C13	5'-GGGGGUGGGGGGCGCGGG-3'	....(((.....)))... ( -2.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	18	chr19:3557416-3557433	MFSD12	HGNC:28299	ENSG00000161091	GGGGGUGGGGGGCGCGGG
hsa_m5C_2156	chr17	41802803	41802804	-	ENST00000355468	C1934	m5C	C8	5'-GGGAGGCCAAGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr17:41802797-41802811	P3H4	HGNC:16946	ENSG00000141696	GGGAGGCCAAGGUGG
hsa_m5C_2157	chr5	177426822	177426823	+	ENST00000355472	C148	m5C	C3	5'-GGCGGGCCAGGCGG-3'	.((.......)).. ( -1.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	14	chr5:177426821-177426834	GRK6	HGNC:4545	ENSG00000198055	GGCGGGCCAGGCGG
hsa_m5C_2158	chrX	107000134	107000135	-	ENST00000355610	C78	m5C	C4	5'-GGACAGGUGGCUGG-3'	...(((....))). ( -2.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chrX:107000125-107000138	MORC4	HGNC:23485	ENSG00000133131	GGACAGGUGGCUGG
hsa_m5C_2159	chrX	123913198	123913199	+	ENST00000355640	C7818	m5C	C12	5'-GGCGCCGGGCACGGUGG-3'	..(((((....))))). ( -7.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	17	chrX:123913188-123913204	XIAP	HGNC:592	ENSG00000101966	GGCGCCGGGCACGGUGG
hsa_m5C_2160	chr19	10831184	10831185	+	ENST00000355667	C2915	m5C	C4	5'-GGCCCCGGUCCAGGGCCGG-3'	(((((.......))))).. (-10.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	19	chr19:10831182-10831200	DNM2	HGNC:2974	ENSG00000079805	GGCCCCGGUCCAGGGCCGG
hsa_m5C_2161	chr19	10831633	10831634	+	ENST00000355667	C3364	m5C	C5	5'-GGCCCGGAGCCGUUGGCCCGG-3'	...((((.(((...))))))) (-10.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	21	chr19:10831630-10831650	DNM2	HGNC:2974	ENSG00000079805	GGCCCGGAGCCGUUGGCCCGG
hsa_m5C_2162	chr19	10831646	10831647	+	ENST00000355667	C3377	m5C	C18	5'-GGCCCGGAGCCGUUGGCCCGG-3'	...((((.(((...))))))) (-10.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	21	chr19:10831630-10831650	DNM2	HGNC:2974	ENSG00000079805	GGCCCGGAGCCGUUGGCCCGG
hsa_m5C_2163	chr19	10831647	10831648	+	ENST00000355667	C3378	m5C	C19	5'-GGCCCGGAGCCGUUGGCCCGG-3'	...((((.(((...))))))) (-10.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	21	chr19:10831630-10831650	DNM2	HGNC:2974	ENSG00000079805	GGCCCGGAGCCGUUGGCCCGG
hsa_m5C_2164	chr10	70300339	70300340	-	ENST00000355790	C2047	m5C	C16	5'-GGUAUGGUCAGGCAACAGG-3'	NA	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr10:70300337-70300355	LRRC20	HGNC:23421	ENSG00000172731	GGUAUGGUCAGGCAACAGG
hsa_m5C_2165	chr5	110739161	110739162	+	ENST00000355943	C156	m5C	C8	5'-GGGCUACCGGGGUGGUGCCCGGGACGAGCAGGG-3'	..(((.((.((((...)))).))...))).... (-11.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	33	chr5:110739155-110739187	SLC25A46	HGNC:25198	ENSG00000164209	GGGCUACCGGGGUGGUGCCCGGGACGAGCAGGG
hsa_m5C_2166	chr2	168075177	168075178	-	ENST00000355999	C1303	m5C	C6	5'-GGGGACUGGGAGUGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	15	chr2:168075169-168075183	STK39	HGNC:17717	ENSG00000198648	GGGGACUGGGAGUGG
hsa_m5C_2167	chr2	203297883	203297884	+	ENST00000356079	C2410	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr2:203297879-203297893	CYP20A1	HGNC:20576	ENSG00000119004	GGAGGCUGAGGCAGG
hsa_m5C_2168	chr20	58715289	58715290	+	ENST00000356091	C1637	m5C	C30	5'-GGCUGUGAGGUGGAUGUCGAGGAGGGGGACCUGGGG-3'	(((............)))....(((....))).... ( -4.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	36	chr20:58715261-58715296	NPEPL1	HGNC:16244	ENSG00000215440	GGCUGUGAGGUGGAUGUCGAGGAGGGGGACCUGGGG
hsa_m5C_2169	chr17	67339362	67339363	-	ENST00000356126	C2909	m5C	C7	5'-GGAGGCCAAGGCGG-3'	....((....)).. ( -1.70)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	14	chr17:67339356-67339369	PSMD12	HGNC:9557	ENSG00000197170	GGAGGCCAAGGCGG
hsa_m5C_2170	chr17	67339357	67339358	-	ENST00000356126	C2914	m5C	C12	5'-GGAGGCCAAGGCGG-3'	....((....)).. ( -1.70)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	14	chr17:67339356-67339369	PSMD12	HGNC:9557	ENSG00000197170	GGAGGCCAAGGCGG
hsa_m5C_2171	chr16	30659637	30659638	+	ENST00000356166	C1208	m5C	C20	5'-GGCGCCGCCGAGGUCCAGGCGG-3'	....(((((........))))) ( -9.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr16:30659619-30659640	FBRS	HGNC:20442	ENSG00000156860	GGCGCCGCCGAGGUCCAGGCGG
hsa_m5C_2172	chr16	27488271	27488272	-	ENST00000356183	C3678	m5C	C6	5'-GGAAGCGGCUGAAGAAGGACCCUGG-3'	...((.((((......)).)))).. ( -2.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chr16:27488253-27488277	GTF3C1	HGNC:4664	ENSG00000077235	GGAAGCGGCUGAAGAAGGACCCUGG
hsa_m5C_2173	chr16	27488268	27488269	-	ENST00000356183	C3681	m5C	C9	5'-GGAAGCGGCUGAAGAAGGACCCUGG-3'	...((.((((......)).)))).. ( -2.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chr16:27488253-27488277	GTF3C1	HGNC:4664	ENSG00000077235	GGAAGCGGCUGAAGAAGGACCCUGG
hsa_m5C_2174	chr16	27488257	27488258	-	ENST00000356183	C3692	m5C	C20	5'-GGAAGCGGCUGAAGAAGGACCCUGG-3'	...((.((((......)).)))).. ( -2.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chr16:27488253-27488277	GTF3C1	HGNC:4664	ENSG00000077235	GGAAGCGGCUGAAGAAGGACCCUGG
hsa_m5C_2175	chr16	27488256	27488257	-	ENST00000356183	C3693	m5C	C21	5'-GGAAGCGGCUGAAGAAGGACCCUGG-3'	...((.((((......)).)))).. ( -2.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chr16:27488253-27488277	GTF3C1	HGNC:4664	ENSG00000077235	GGAAGCGGCUGAAGAAGGACCCUGG
hsa_m5C_2176	chr16	27488255	27488256	-	ENST00000356183	C3694	m5C	C22	5'-GGAAGCGGCUGAAGAAGGACCCUGG-3'	...((.((((......)).)))).. ( -2.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chr16:27488253-27488277	GTF3C1	HGNC:4664	ENSG00000077235	GGAAGCGGCUGAAGAAGGACCCUGG
hsa_m5C_2177	chr20	57391565	57391566	+	ENST00000356208	C171	m5C	C3	5'-GGCGGCGGGG-3'	NA	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	10	chr20:57391564-57391573	RBM38	HGNC:15818	ENSG00000132819	GGCGGCGGGG
hsa_m5C_2178	chr11	77473676	77473677	-	ENST00000356341	C418	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31061524	11	chr11:77473669-77473679	PAK1	HGNC:8590	ENSG00000149269	GGCGGCGGCGG
hsa_m5C_2179	chr11	77473673	77473674	-	ENST00000356341	C421	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	11	chr11:77473669-77473679	PAK1	HGNC:8590	ENSG00000149269	GGCGGCGGCGG
hsa_m5C_2180	chr11	77473670	77473671	-	ENST00000356341	C424	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	11	chr11:77473669-77473679	PAK1	HGNC:8590	ENSG00000149269	GGCGGCGGCGG
hsa_m5C_2181	chr7	102447426	102447427	+	ENST00000356387	C1417	m5C	C8	5'-GGGAGAGCCAGGGCAGGG-3'	((.....))......... ( -1.50)	loop	mRNA	spleen	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	18	chr7:102447420-102447437	ORAI2	HGNC:21667	ENSG00000160991	GGGAGAGCCAGGGCAGGG
hsa_m5C_2182	chr3	48918978	48918979	+	ENST00000356401	C138	m5C	C12	5'-GGGCUCAGCGGCCGCGAGG-3'	.((((....))))...... ( -4.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr3:48918968-48918986	ARIH2	HGNC:690	ENSG00000177479	GGGCUCAGCGGCCGCGAGG
hsa_m5C_2183	chr4	8396976	8396977	-	ENST00000356406	C1106	m5C	C8	5'-GGACCCACAGAGGAGGAGG-3'	....((........))... ( -0.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr4:8396966-8396984	ACOX3	HGNC:121	ENSG00000087008	GGACCCACAGAGGAGGAGG
hsa_m5C_2184	chr2	54964016	54964017	+	ENST00000356458	C5818	m5C	C18	5'-GGUGAGCUUGGGCCAUGCGGCCAGG-3'	..........((((....))))... ( -7.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr2:54964000-54964024	EML6	HGNC:35412	ENSG00000214595	GGUGAGCUUGGGCCAUGCGGCCAGG
hsa_m5C_2185	chr1	3514616	3514617	-	ENST00000356575	C1026	m5C	C7	5'-GGUGGUCCGGGG-3'	((....)).... ( -1.00)	loop	mRNA	HeLa,T24;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa,siControl;HeLa	m5C-RIP-seq:(Medium),RNA-BisSeq:(High);UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;38168991;m6A-Atlas database;RMVar database	28418038;31061524;38168991	12	chr1:3514612-3514623	MEGF6	HGNC:3232	ENSG00000162591	GGUGGUCCGGGG
hsa_m5C_2186	chr9	137301431	137301432	-	ENST00000356628	C840	m5C	C13	5'-GGCCCCAGGGUCCGGCAGCCCCGCCGG-3'	((((....))))((((......)))). (-11.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr9:137301418-137301444	NRARP	HGNC:33843	ENSG00000198435	GGCCCCAGGGUCCGGCAGCCCCGCCGG
hsa_m5C_2187	chr9	137301386	137301387	-	ENST00000356628	C885	m5C	C5	5'-GGCCCGGCCGGGCCGG-3'	(((((....))))).. (-10.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr9:137301376-137301391	NRARP	HGNC:33843	ENSG00000198435	GGCCCGGCCGGGCCGG
hsa_m5C_2188	chr9	137301377	137301378	-	ENST00000356628	C894	m5C	C14	5'-GGCCCGGCCGGGCCGG-3'	(((((....))))).. (-10.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr9:137301376-137301391	NRARP	HGNC:33843	ENSG00000198435	GGCCCGGCCGGGCCGG
hsa_m5C_2189	chr9	137302044	137302045	-	ENST00000356628	C227	m5C	C17	5'-GGCGGCGUGCGGGGCCCGG-3'	..(((.((.....))))). ( -4.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr9:137302043-137302061	NRARP	HGNC:33843	ENSG00000198435	GGCGGCGUGCGGGGCCCGG
hsa_m5C_2190	chr9	137301319	137301320	-	ENST00000356628	C952	m5C	C10	5'-GGGUGGGGGCGGGGCGCGGG-3'	........(((...)))... ( -2.00)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	20	chr9:137301310-137301329	NRARP	HGNC:33843	ENSG00000198435	GGGUGGGGGCGGGGCGCGGG
hsa_m5C_2191	chr19	1010703	1010704	-	ENST00000356663	C1636	m5C	C4	5'-GGGCCCCGUCUCGCCUGGGGCCAGCGGGAGUCCCGGG-3'	.(((((((.......)))))))..((((...)))).. (-18.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	37	chr19:1010671-1010707	TMEM259	HGNC:17039	ENSG00000182087	GGGCCCCGUCUCGCCUGGGGCCAGCGGGAGUCCCGGG
hsa_m5C_2192	chr19	1010702	1010703	-	ENST00000356663	C1637	m5C	C5	5'-GGGCCCCGUCUCGCCUGGGGCCAGCGGGAGUCCCGGG-3'	.(((((((.......)))))))..((((...)))).. (-18.70)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	37	chr19:1010671-1010707	TMEM259	HGNC:17039	ENSG00000182087	GGGCCCCGUCUCGCCUGGGGCCAGCGGGAGUCCCGGG
hsa_m5C_2193	chr19	1010701	1010702	-	ENST00000356663	C1638	m5C	C6	5'-GGGCCCCGUCUCGCCUGGGGCCAGCGGGAGUCCCGGG-3'	.(((((((.......)))))))..((((...)))).. (-18.70)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	37	chr19:1010671-1010707	TMEM259	HGNC:17039	ENSG00000182087	GGGCCCCGUCUCGCCUGGGGCCAGCGGGAGUCCCGGG
hsa_m5C_2194	chr19	1010700	1010701	-	ENST00000356663	C1639	m5C	C7	5'-GGGCCCCGUCUCGCCUGGGGCCAGCGGGAGUCCCGGG-3'	.(((((((.......)))))))..((((...)))).. (-18.70)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	37	chr19:1010671-1010707	TMEM259	HGNC:17039	ENSG00000182087	GGGCCCCGUCUCGCCUGGGGCCAGCGGGAGUCCCGGG
hsa_m5C_2195	chr19	1010686	1010687	-	ENST00000356663	C1653	m5C	C21	5'-GGGCCCCGUCUCGCCUGGGGCCAGCGGGAGUCCCGGG-3'	.(((((((.......)))))))..((((...)))).. (-18.70)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	37	chr19:1010671-1010707	TMEM259	HGNC:17039	ENSG00000182087	GGGCCCCGUCUCGCCUGGGGCCAGCGGGAGUCCCGGG
hsa_m5C_2196	chr19	1010685	1010686	-	ENST00000356663	C1654	m5C	C22	5'-GGGCCCCGUCUCGCCUGGGGCCAGCGGGAGUCCCGGG-3'	.(((((((.......)))))))..((((...)))).. (-18.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	37	chr19:1010671-1010707	TMEM259	HGNC:17039	ENSG00000182087	GGGCCCCGUCUCGCCUGGGGCCAGCGGGAGUCCCGGG
hsa_m5C_2197	chr5	179618019	179618020	-	ENST00000356731	C2292	m5C	C15	5'-GGCUAUAAUGAUGGCUAUGGAUUUGG-3'	((((((....)))))).......... ( -4.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr5:179618009-179618034	HNRNPH1	HGNC:5041	ENSG00000169045	GGCUAUAAUGAUGGCUAUGGAUUUGG
hsa_m5C_2198	chr11	64351170	64351171	+	ENST00000356786	C2937	m5C	C3	5'-GGCCCCGCGGGGCUGG-3'	(((((....))))).. ( -8.70)	loop	mRNA	HCT116;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	16	chr11:64351169-64351184	CCDC88B	HGNC:26757	ENSG00000168071	GGCCCCGCGGGGCUGG
hsa_m5C_2199	chr11	64351171	64351172	+	ENST00000356786	C2938	m5C	C4	5'-GGCCCCGCGGGGCUGG-3'	(((((....))))).. ( -8.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr11:64351169-64351184	CCDC88B	HGNC:26757	ENSG00000168071	GGCCCCGCGGGGCUGG
hsa_m5C_2200	chr11	64351172	64351173	+	ENST00000356786	C2939	m5C	C5	5'-GGCCCCGCGGGGCUGG-3'	(((((....))))).. ( -8.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr11:64351169-64351184	CCDC88B	HGNC:26757	ENSG00000168071	GGCCCCGCGGGGCUGG
hsa_m5C_2201	chr11	64351173	64351174	+	ENST00000356786	C2940	m5C	C6	5'-GGCCCCGCGGGGCUGG-3'	(((((....))))).. ( -8.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr11:64351169-64351184	CCDC88B	HGNC:26757	ENSG00000168071	GGCCCCGCGGGGCUGG
hsa_m5C_2202	chr6	127286806	127286807	+	ENST00000356799	C507	m5C	C8	5'-GGAGCUUCAUGGCUUGGAAAGCGG-3'	.(((((....)))))......... ( -4.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	24	chr6:127286800-127286823	RNF146	HGNC:21336	ENSG00000118518	GGAGCUUCAUGGCUUGGAAAGCGG
hsa_m5C_2203	chr9	135486891	135486892	+	ENST00000356818	C2951	m5C	C19	5'-GGACGCGGCCCUGGCCUUCCGG-3'	(((...(((....))).))).. ( -6.50)	loop	mRNA	293T;HeLa;frontal_cortex,lung,HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;38168991	22	chr9:135486874-135486895	PPP1R26	HGNC:29089	ENSG00000196422	GGACGCGGCCCUGGCCUUCCGG
hsa_m5C_2204	chr9	135486717	135486718	+	ENST00000356818	C2777	m5C	C3	5'-GGCGGGCUCCGGAGAGACUGGAAAGACAGG-3'	.......(((((.....)))))........ ( -5.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr9:135486716-135486745	PPP1R26	HGNC:29089	ENSG00000196422	GGCGGGCUCCGGAGAGACUGGAAAGACAGG
hsa_m5C_2205	chr9	135487119	135487120	+	ENST00000356818	C3179	m5C	C12	5'-GGGACAGGGGGCCCAGCCAGGCCAGAGG-3'	.........((((......))))..... ( -7.00)	loop	mRNA	SNB19;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	28	chr9:135487109-135487136	PPP1R26	HGNC:29089	ENSG00000196422	GGGACAGGGGGCCCAGCCAGGCCAGAGG
hsa_m5C_2206	chr9	135487120	135487121	+	ENST00000356818	C3180	m5C	C13	5'-GGGACAGGGGGCCCAGCCAGGCCAGAGG-3'	.........((((......))))..... ( -7.00)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr9:135487109-135487136	PPP1R26	HGNC:29089	ENSG00000196422	GGGACAGGGGGCCCAGCCAGGCCAGAGG
hsa_m5C_2207	chr9	135487121	135487122	+	ENST00000356818	C3181	m5C	C14	5'-GGGACAGGGGGCCCAGCCAGGCCAGAGG-3'	.........((((......))))..... ( -7.00)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr9:135487109-135487136	PPP1R26	HGNC:29089	ENSG00000196422	GGGACAGGGGGCCCAGCCAGGCCAGAGG
hsa_m5C_2208	chr6	16129293	16129294	+	ENST00000356840	C209	m5C	C3	5'-GGCGGCUGUGGCGG-3'	.((.......)).. ( -1.40)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr6:16129292-16129305	MYLIP	HGNC:21155	ENSG00000007944	GGCGGCUGUGGCGG
hsa_m5C_2209	chr15	25862978	25862979	-	ENST00000356865	C317	m5C	C5	5'-GGACCCUGCGGCUGGCGCGG-3'	.....(((((.....))))) ( -6.10)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr15:25862964-25862983	ATP10A	HGNC:13542	ENSG00000206190	GGACCCUGCGGCUGGCGCGG
hsa_m5C_2210	chr6	159969237	159969238	+	ENST00000356956	C157	m5C	C4	5'-GGGCCCGGCGCGAUGGGGG-3'	...((((......)))).. ( -5.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr6:159969235-159969253	IGF2R	HGNC:5467	ENSG00000197081	GGGCCCGGCGCGAUGGGGG
hsa_m5C_2211	chr6	159969238	159969239	+	ENST00000356956	C158	m5C	C5	5'-GGGCCCGGCGCGAUGGGGG-3'	...((((......)))).. ( -5.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr6:159969235-159969253	IGF2R	HGNC:5467	ENSG00000197081	GGGCCCGGCGCGAUGGGGG
hsa_m5C_2212	chr6	159969242	159969243	+	ENST00000356956	C162	m5C	C9	5'-GGGCCCGGCGCGAUGGGGG-3'	...((((......)))).. ( -5.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr6:159969235-159969253	IGF2R	HGNC:5467	ENSG00000197081	GGGCCCGGCGCGAUGGGGG
hsa_m5C_2213	chr16	11742712	11742713	-	ENST00000356957	C126	m5C	C6	5'-GGAGGCCGCGGCGG-3'	....((....)).. ( -1.40)	loop	mRNA	HeLa	RBS-Seq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30872485	14	chr16:11742705-11742718	TXNDC11	HGNC:28030	ENSG00000153066	GGAGGCCGCGGCGG
hsa_m5C_2214	chr8	143815535	143815536	-	ENST00000356994	C238	m5C	C4	5'-GGGCCGGGCCCAGCGCCGGCCGCGG-3'	.((((((((...)).)))))).... (-14.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr8:143815515-143815539	SCRIB	HGNC:30377	ENSG00000180900	GGGCCGGGCCCAGCGCCGGCCGCGG
hsa_m5C_2215	chr8	143815534	143815535	-	ENST00000356994	C239	m5C	C5	5'-GGGCCGGGCCCAGCGCCGGCCGCGG-3'	.((((((((...)).)))))).... (-14.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr8:143815515-143815539	SCRIB	HGNC:30377	ENSG00000180900	GGGCCGGGCCCAGCGCCGGCCGCGG
hsa_m5C_2216	chr8	143803712	143803713	-	ENST00000356994	C3749	m5C	C27	5'-GGGGAGAGGCUGGGCAUCAGCAUCCGCGGGGGUGCCAGGG-3'	.........((.((((((.((....))...)))))).)). (-11.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	40	chr8:143803700-143803739	SCRIB	HGNC:30377	ENSG00000180900	GGGGAGAGGCUGGGCAUCAGCAUCCGCGGGGGUGCCAGGG
hsa_m5C_2217	chr8	143803704	143803705	-	ENST00000356994	C3757	m5C	C35	5'-GGGGAGAGGCUGGGCAUCAGCAUCCGCGGGGGUGCCAGGG-3'	.........((.((((((.((....))...)))))).)). (-11.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	40	chr8:143803700-143803739	SCRIB	HGNC:30377	ENSG00000180900	GGGGAGAGGCUGGGCAUCAGCAUCCGCGGGGGUGCCAGGG
hsa_m5C_2218	chr8	143803703	143803704	-	ENST00000356994	C3758	m5C	C36	5'-GGGGAGAGGCUGGGCAUCAGCAUCCGCGGGGGUGCCAGGG-3'	.........((.((((((.((....))...)))))).)). (-11.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	40	chr8:143803700-143803739	SCRIB	HGNC:30377	ENSG00000180900	GGGGAGAGGCUGGGCAUCAGCAUCCGCGGGGGUGCCAGGG
hsa_m5C_2219	chr17	42403892	42403893	-	ENST00000357037	C2126	m5C	C8	5'-GGGAGGCCGAGGUGGGCGG-3'	.....(((......))).. ( -5.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	19	chr17:42403882-42403900	CAVIN1	HGNC:9688	ENSG00000177469	GGGAGGCCGAGGUGGGCGG
hsa_m5C_2220	chr17	42403883	42403884	-	ENST00000357037	C2135	m5C	C17	5'-GGGAGGCCGAGGUGGGCGG-3'	.....(((......))).. ( -5.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	19	chr17:42403882-42403900	CAVIN1	HGNC:9688	ENSG00000177469	GGGAGGCCGAGGUGGGCGG
hsa_m5C_2221	chr17	42423005	42423006	-	ENST00000357037	C251	m5C	C11	5'-GGGGCUCAGGCAGCGGAGGAGCCGUCGG-3'	..(((((...........)))))..... ( -7.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr17:42422989-42423016	CAVIN1	HGNC:9688	ENSG00000177469	GGGGCUCAGGCAGCGGAGGAGCCGUCGG
hsa_m5C_2222	chr17	42423002	42423003	-	ENST00000357037	C254	m5C	C14	5'-GGGGCUCAGGCAGCGGAGGAGCCGUCGG-3'	..(((((...........)))))..... ( -7.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr17:42422989-42423016	CAVIN1	HGNC:9688	ENSG00000177469	GGGGCUCAGGCAGCGGAGGAGCCGUCGG
hsa_m5C_2223	chr19	2073059	2073060	-	ENST00000357066	C1363	m5C	C6	5'-GGUGGCUCCCAGGCUCCUGG-3'	((.((((....))))))... ( -4.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr19:2073046-2073065	MOB3A	HGNC:29802	ENSG00000172081	GGUGGCUCCCAGGCUCCUGG
hsa_m5C_2224	chr19	2073057	2073058	-	ENST00000357066	C1365	m5C	C8	5'-GGUGGCUCCCAGGCUCCUGG-3'	((.((((....))))))... ( -4.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr19:2073046-2073065	MOB3A	HGNC:29802	ENSG00000172081	GGUGGCUCCCAGGCUCCUGG
hsa_m5C_2225	chr19	2073056	2073057	-	ENST00000357066	C1366	m5C	C9	5'-GGUGGCUCCCAGGCUCCUGG-3'	((.((((....))))))... ( -4.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr19:2073046-2073065	MOB3A	HGNC:29802	ENSG00000172081	GGUGGCUCCCAGGCUCCUGG
hsa_m5C_2226	chr19	2073055	2073056	-	ENST00000357066	C1367	m5C	C10	5'-GGUGGCUCCCAGGCUCCUGG-3'	((.((((....))))))... ( -4.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr19:2073046-2073065	MOB3A	HGNC:29802	ENSG00000172081	GGUGGCUCCCAGGCUCCUGG
hsa_m5C_2227	chr22	40931612	40931613	+	ENST00000357137	C6736	m5C	C6	5'-GGAGGCUGAGGUGG-3'	NA	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr22:40931608-40931621	XPNPEP3	HGNC:28052	ENSG00000196236	GGAGGCUGAGGUGG
hsa_m5C_2228	chr22	40927372	40927373	+	ENST00000357137	C2496	m5C	C15	5'-GGCUACUUGGGAGGCUGAGG-3'	.....(((((....))))). ( -3.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	20	chr22:40927359-40927378	XPNPEP3	HGNC:28052	ENSG00000196236	GGCUACUUGGGAGGCUGAGG
hsa_m5C_2229	chr22	40927638	40927639	+	ENST00000357137	C2762	m5C	C7	5'-GGGAGGCCGAGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr22:40927633-40927647	XPNPEP3	HGNC:28052	ENSG00000196236	GGGAGGCCGAGGUGG
hsa_m5C_2230	chr22	40927639	40927640	+	ENST00000357137	C2763	m5C	C8	5'-GGGAGGCCGAGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr22:40927633-40927647	XPNPEP3	HGNC:28052	ENSG00000196236	GGGAGGCCGAGGUGG
hsa_m5C_2231	chrX	16947016	16947017	+	ENST00000357277	C360	m5C	C10	5'-GGGCGGGGGCCCCGGGUCUGGG-3'	((((....)))).......... ( -7.60)	loop	mRNA	293T;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	22	chrX:16947008-16947029	REPS2	HGNC:9963	ENSG00000169891	GGGCGGGGGCCCCGGGUCUGGG
hsa_m5C_2232	chrX	16947017	16947018	+	ENST00000357277	C361	m5C	C11	5'-GGGCGGGGGCCCCGGGUCUGGG-3'	((((....)))).......... ( -7.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	22	chrX:16947008-16947029	REPS2	HGNC:9963	ENSG00000169891	GGGCGGGGGCCCCGGGUCUGGG
hsa_m5C_2233	chrX	16947018	16947019	+	ENST00000357277	C362	m5C	C12	5'-GGGCGGGGGCCCCGGGUCUGGG-3'	((((....)))).......... ( -7.60)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	22	chrX:16947008-16947029	REPS2	HGNC:9963	ENSG00000169891	GGGCGGGGGCCCCGGGUCUGGG
hsa_m5C_2234	chr6	43450690	43450691	-	ENST00000357338	C1701	m5C	C11	5'-GGCCUGGCGCCGGGG-3'	..((((....)))). ( -4.10)	loop	mRNA	frontal_cortex	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	15	chr6:43450687-43450701	DLK2	HGNC:21113	ENSG00000171462	GGCCUGGCGCCGGGG
hsa_m5C_2235	chr15	89900241	89900242	-	ENST00000357484	C2351	m5C	C4	5'-GGUCUUGGAAACAGGGGCCAGAGG-3'	(((((((....)).)))))..... ( -6.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr15:89900222-89900245	ARPIN	HGNC:28782	ENSG00000242498	GGUCUUGGAAACAGGGGCCAGAGG
hsa_m5C_2236	chr12	120581381	120581382	-	ENST00000357500	C21	m5C	C5	5'-GGACCGGAGAGCGCGGAGG-3'	...(((.......)))... ( -3.00)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	19	chr12:120581368-120581386	POP5	HGNC:17689	ENSG00000167272	GGACCGGAGAGCGCGGAGG
hsa_m5C_2237	chr9	137277788	137277789	+	ENST00000357503	C64	m5C	C5	5'-GGCCCAGGAGGCCCCUGG-3'	...(((((.....))))) ( -6.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr9:137277785-137277802	TOR4A	HGNC:25981	ENSG00000198113	GGCCCAGGAGGCCCCUGG
hsa_m5C_2238	chr9	137280939	137280940	+	ENST00000357503	C2470	m5C	C5	5'-GGGGCCGGCGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	11	chr9:137280936-137280946	TOR4A	HGNC:25981	ENSG00000198113	GGGGCCGGCGG
hsa_m5C_2239	chr9	137280940	137280941	+	ENST00000357503	C2471	m5C	C6	5'-GGGGCCGGCGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	11	chr9:137280936-137280946	TOR4A	HGNC:25981	ENSG00000198113	GGGGCCGGCGG
hsa_m5C_2240	chr9	137280943	137280944	+	ENST00000357503	C2474	m5C	C9	5'-GGGGCCGGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database;RMVar database	28418038;22344696	11	chr9:137280936-137280946	TOR4A	HGNC:25981	ENSG00000198113	GGGGCCGGCGG
hsa_m5C_2241	chr11	65888439	65888440	-	ENST00000357519	C32	m5C	C5	5'-GGGGCGCUGCGGCCCCGG-3'	(((((......))))).. (-12.00)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	18	chr11:65888427-65888444	FIBP	HGNC:3705	ENSG00000172500	GGGGCGCUGCGGCCCCGG
hsa_m5C_2242	chr11	65888431	65888432	-	ENST00000357519	C40	m5C	C13	5'-GGGGCGCUGCGGCCCCGG-3'	(((((......))))).. (-12.00)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	18	chr11:65888427-65888444	FIBP	HGNC:3705	ENSG00000172500	GGGGCGCUGCGGCCCCGG
hsa_m5C_2243	chr11	65888430	65888431	-	ENST00000357519	C41	m5C	C14	5'-GGGGCGCUGCGGCCCCGG-3'	(((((......))))).. (-12.00)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	18	chr11:65888427-65888444	FIBP	HGNC:3705	ENSG00000172500	GGGGCGCUGCGGCCCCGG
hsa_m5C_2244	chr11	65888429	65888430	-	ENST00000357519	C42	m5C	C15	5'-GGGGCGCUGCGGCCCCGG-3'	(((((......))))).. (-12.00)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	18	chr11:65888427-65888444	FIBP	HGNC:3705	ENSG00000172500	GGGGCGCUGCGGCCCCGG
hsa_m5C_2245	chr11	65888428	65888429	-	ENST00000357519	C43	m5C	C16	5'-GGGGCGCUGCGGCCCCGG-3'	(((((......))))).. (-12.00)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	18	chr11:65888427-65888444	FIBP	HGNC:3705	ENSG00000172500	GGGGCGCUGCGGCCCCGG
hsa_m5C_2246	chr5	140561095	140561096	-	ENST00000357560	C1191	m5C	C12	5'-GGCAAG^UGGAGCUGCUGGAUGCGG-3'	...........((((.....)))) ( -3.50)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr5:140561084-140561101;140561365-140561370	APBB3	HGNC:20708	ENSG00000113108	GGCAAGUGGAGCUGCUGGAUGCGG
hsa_m5C_2247	chr5	140560703	140560704	-	ENST00000357560	C1320	m5C	C9	5'-GGGGGGACCGGAAUGCCUGG-3'	.......((((.....)))) ( -3.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	20	chr5:140560693-140560712	APBB3	HGNC:20708	ENSG00000113108	GGGGGGACCGGAAUGCCUGG
hsa_m5C_2248	chr22	29350075	29350076	-	ENST00000357586	C1404	m5C	C13	5'-GGUCCAGGAGGCCAUCGUGG-3'	...(((.((.....)).))) ( -4.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr22:29350069-29350088	AP1B1	HGNC:554	ENSG00000100280	GGUCCAGGAGGCCAUCGUGG
hsa_m5C_2249	chr6	26091499	26091500	+	ENST00000357618	C539	m5C	C4	5'-GGGCCAGGCAGAACAGGGCCUACCUGG-3'	...(((((.((........)).))))) ( -7.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr6:26091497-26091523	HFE	HGNC:4886	ENSG00000010704	GGGCCAGGCAGAACAGGGCCUACCUGG
hsa_m5C_2250	chr6	26091500	26091501	+	ENST00000357618	C540	m5C	C5	5'-GGGCCAGGCAGAACAGGGCCUACCUGG-3'	...(((((.((........)).))))) ( -7.90)	loop	mRNA	HeLa	RBS-Seq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30872485	27	chr6:26091497-26091523	HFE	HGNC:4886	ENSG00000010704	GGGCCAGGCAGAACAGGGCCUACCUGG
hsa_m5C_2251	chr15	94298443	94298444	+	ENST00000357742	C348	m5C	C12	5'-GGAGGCUGAGGCCUUGG-3'	.(((((....))))).. ( -5.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	17	chr15:94298433-94298449	MCTP2	HGNC:25636	ENSG00000140563	GGAGGCUGAGGCCUUGG
hsa_m5C_2252	chr15	94298444	94298445	+	ENST00000357742	C349	m5C	C13	5'-GGAGGCUGAGGCCUUGG-3'	.(((((....))))).. ( -5.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	17	chr15:94298433-94298449	MCTP2	HGNC:25636	ENSG00000140563	GGAGGCUGAGGCCUUGG
hsa_m5C_2253	chr10	96395914	96395915	-	ENST00000357947	C1731	m5C	C13	5'-GGAUUACGGUUUCAGAGGGG-3'	NA	loop	mRNA	Muscle	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	20	chr10:96395908-96395927	TLL2	HGNC:11844	ENSG00000095587	GGAUUACGGUUUCAGAGGGG
hsa_m5C_2254	chr1	205269037	205269038	+	ENST00000358024	C1455	m5C	C5	5'-GGGGCACCGGACCCCCAGCGG-3'	((((........))))..... ( -6.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr1:205269034-205269054	TMCC2	HGNC:24239	ENSG00000133069	GGGGCACCGGACCCCCAGCGG
hsa_m5C_2255	chr14	64130145	64130146	+	ENST00000358025	C14450	m5C	C3	5'-GGCAUGGUGGAACUGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	16	chr14:64130144-64130159	SYNE2	HGNC:17084	ENSG00000054654	GGCAUGGUGGAACUGG
hsa_m5C_2256	chr14	64130155	64130156	+	ENST00000358025	C14460	m5C	C13	5'-GGCAUGGUGGAACUGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	16	chr14:64130144-64130159	SYNE2	HGNC:17084	ENSG00000054654	GGCAUGGUGGAACUGG
hsa_m5C_2257	chr14	64210013	64210014	+	ENST00000358025	C18825	m5C	C12	5'-GGCGGCUGGCCCGG-3'	(((.....)))... ( -4.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr14:64210003-64210016	SYNE2	HGNC:17084	ENSG00000054654	GGCGGCUGGCCCGG
hsa_m5C_2258	chr7	100827078	100827079	-	ENST00000358173	C445	m5C	C23	5'-GGGAGAGUCAGACCUGGGGGGGCGAGGG-3'	............(((.........))). ( -2.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	30872485	28	chr7:100827074-100827101	EPHB4	HGNC:3395	ENSG00000196411	GGGAGAGUCAGACCUGGGGGGGCGAGGG
hsa_m5C_2259	chr20	59947434	59947435	+	ENST00000358293	C3907	m5C	C6	5'-GGAGGCGGAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	11	chr20:59947430-59947440	FAM217B	HGNC:16170	ENSG00000196227	GGAGGCGGAGG
hsa_m5C_2260	chr20	59944554	59944555	+	ENST00000358293	C1027	m5C	C7	5'-GGGGGGCAAAGCAAGGCCCCCCACUGCCCCUGGGACCUCAGGG-3'	(((((((........))))))).....((((((....)))))) (-25.00)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	43	chr20:59944549-59944591	FAM217B	HGNC:16170	ENSG00000196227	GGGGGGCAAAGCAAGGCCCCCCACUGCCCCUGGGACCUCAGGG
hsa_m5C_2261	chr20	59944564	59944565	+	ENST00000358293	C1037	m5C	C17	5'-GGGGGGCAAAGCAAGGCCCCCCACUGCCCCUGGGACCUCAGGG-3'	(((((((........))))))).....((((((....)))))) (-25.00)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	43	chr20:59944549-59944591	FAM217B	HGNC:16170	ENSG00000196227	GGGGGGCAAAGCAAGGCCCCCCACUGCCCCUGGGACCUCAGGG
hsa_m5C_2262	chr20	59944565	59944566	+	ENST00000358293	C1038	m5C	C18	5'-GGGGGGCAAAGCAAGGCCCCCCACUGCCCCUGGGACCUCAGGG-3'	(((((((........))))))).....((((((....)))))) (-25.00)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	43	chr20:59944549-59944591	FAM217B	HGNC:16170	ENSG00000196227	GGGGGGCAAAGCAAGGCCCCCCACUGCCCCUGGGACCUCAGGG
hsa_m5C_2263	chr20	59944566	59944567	+	ENST00000358293	C1039	m5C	C19	5'-GGGGGGCAAAGCAAGGCCCCCCACUGCCCCUGGGACCUCAGGG-3'	(((((((........))))))).....((((((....)))))) (-25.00)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	43	chr20:59944549-59944591	FAM217B	HGNC:16170	ENSG00000196227	GGGGGGCAAAGCAAGGCCCCCCACUGCCCCUGGGACCUCAGGG
hsa_m5C_2264	chr20	59944567	59944568	+	ENST00000358293	C1040	m5C	C20	5'-GGGGGGCAAAGCAAGGCCCCCCACUGCCCCUGGGACCUCAGGG-3'	(((((((........))))))).....((((((....)))))) (-25.00)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	43	chr20:59944549-59944591	FAM217B	HGNC:16170	ENSG00000196227	GGGGGGCAAAGCAAGGCCCCCCACUGCCCCUGGGACCUCAGGG
hsa_m5C_2265	chr20	59944568	59944569	+	ENST00000358293	C1041	m5C	C21	5'-GGGGGGCAAAGCAAGGCCCCCCACUGCCCCUGGGACCUCAGGG-3'	(((((((........))))))).....((((((....)))))) (-25.00)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	43	chr20:59944549-59944591	FAM217B	HGNC:16170	ENSG00000196227	GGGGGGCAAAGCAAGGCCCCCCACUGCCCCUGGGACCUCAGGG
hsa_m5C_2266	chr20	59944569	59944570	+	ENST00000358293	C1042	m5C	C22	5'-GGGGGGCAAAGCAAGGCCCCCCACUGCCCCUGGGACCUCAGGG-3'	(((((((........))))))).....((((((....)))))) (-25.00)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	43	chr20:59944549-59944591	FAM217B	HGNC:16170	ENSG00000196227	GGGGGGCAAAGCAAGGCCCCCCACUGCCCCUGGGACCUCAGGG
hsa_m5C_2267	chr22	25028786	25028787	+	ENST00000358431	C1052	m5C	C20	5'-GGCCCCGGCGCAGCGGCCACAGUGG-3'	((((...((...))))))....... ( -6.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr22:25028768-25028792	KIAA1671	HGNC:29345	ENSG00000197077	GGCCCCGGCGCAGCGGCCACAGUGG
hsa_m5C_2268	chr1	114408687	114408688	-	ENST00000358465	C2374	m5C	C3	5'-GGCAGUCGAGGCAG^CUGUGGGUCAUCAGG-3'	.(((((.......)))))........... ( -3.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr1:114407086-114407100;114408677-114408690	TRIM33	HGNC:16290	ENSG00000197323	GGCAGUCGAGGCAGCUGUGGGUCAUCAGG
hsa_m5C_2269	chr4	73258377	73258378	-	ENST00000358602	C421	m5C	C6	5'-GGCGGCGGUGG-3'	NA	loop	mRNA	T24;HeLa,siControl,HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	11	chr4:73258373-73258383	ANKRD17	HGNC:23575	ENSG00000132466	GGCGGCGGUGG
hsa_m5C_2270	chr4	73258368	73258369	-	ENST00000358602	C430	m5C	C3	5'-GGCGGCGGUGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	11	chr4:73258361-73258371	ANKRD17	HGNC:23575	ENSG00000132466	GGCGGCGGUGG
hsa_m5C_2271	chr4	73258365	73258366	-	ENST00000358602	C433	m5C	C6	5'-GGCGGCGGUGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	11	chr4:73258361-73258371	ANKRD17	HGNC:23575	ENSG00000132466	GGCGGCGGUGG
hsa_m5C_2272	chr9	134158866	134158867	+	ENST00000358625	C2056	m5C	C12	5'-GGGGCGGGGAACGGGGGUGGGG-3'	....((.....))......... ( -0.60)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold;rG4-seq:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	22	chr9:134158856-134158877	WDR5	HGNC:12757	ENSG00000196363	GGGGCGGGGAACGGGGGUGGGG
hsa_m5C_2273	chr9	134159829	134159830	+	ENST00000358625	C3019	m5C	C8	5'-GGGGGGACGGCCCACUCCGGGGAGGGG-3'	.(((......))).((((.....)))) ( -8.80)	bulge	mRNA	MRC-5;HeLa,siControl,HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;rG4-seq:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	27	chr9:134159823-134159849	WDR5	HGNC:12757	ENSG00000196363	GGGGGGACGGCCCACUCCGGGGAGGGG
hsa_m5C_2274	chr8	23432616	23432617	-	ENST00000358689	C2348	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	SRV-infected and -uninfected Jurkat	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	30009162	15	chr8:23432608-23432622	ENTPD4	HGNC:14573	ENSG00000197217	GGAGGCUGAGGCAGG
hsa_m5C_2275	chr8	23447818	23447819	-	ENST00000358689	C461	m5C	C6	5'-GGGAUCGUGGUGGACUGUGGUAGCAGUGGG-3'	.............(((((....)))))... ( -4.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	30	chr8:23447795-23447824	ENTPD4	HGNC:14573	ENSG00000197217	GGGAUCGUGGUGGACUGUGGUAGCAGUGGG
hsa_m5C_2276	chr9	136209069	136209070	-	ENST00000358701	C1764	m5C	C4	5'-GGCCAGGGGUGAGGAAGAGG-3'	.(((...))).......... ( -0.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	20	chr9:136209054-136209073	QSOX2	HGNC:30249	ENSG00000165661	GGCCAGGGGUGAGGAAGAGG
hsa_m5C_2277	chr11	64203453	64203454	+	ENST00000358794	C2085	m5C	C6	5'-G^GAGGCGGCAGACGG-3'	.....((.....)). ( -0.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr11:64203228-64203228;64203450-64203463	STIP1	HGNC:11387	ENSG00000168439	GGAGGCGGCAGACGG
hsa_m5C_2278	chr1	200848986	200848987	+	ENST00000358823	C3153	m5C	C39	5'-GGGCACAAAUUCCAGAAGAAACAGGGCUUCCACAGGGACGGG-3'	.(((.....(((.....))).....)))(((....))).... ( -3.60)	loop	mRNA	Muscle	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	42	chr1:200848949-200848990	CAMSAP2	HGNC:29188	ENSG00000118200	GGGCACAAAUUCCAGAAGAAACAGGGCUUCCACAGGGACGGG
hsa_m5C_2279	chr7	151044104	151044105	+	ENST00000358849	C1966	m5C	C8	5'-GGUUGUACAGGAGGCCCUGGACCGGG-3'	((((...((((....))))))))... ( -8.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	26	chr7:151044098-151044123	ABCB8	HGNC:49	ENSG00000197150	GGUUGUACAGGAGGCCCUGGACCGGG
hsa_m5C_2280	chr10	92351359	92351360	+	ENST00000358935	C1318	m5C	C13	5'-GGCAGGGGAAAUCAUCUCGG-3'	.....((((.....)))).. ( -2.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	20	chr10:92351348-92351367	MARCHF5	HGNC:26025	ENSG00000198060	GGCAGGGGAAAUCAUCUCGG
hsa_m5C_2281	chr11	72003126	72003127	-	ENST00000358965	C6964	m5C	C11	5'-GGUGGCUGGGCCCAGCAGG-3'	....((((....))))... ( -4.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	30872485	19	chr11:72003119-72003137	NUMA1	HGNC:8059	ENSG00000137497	GGUGGCUGGGCCCAGCAGG
hsa_m5C_2282	chr11	72003125	72003126	-	ENST00000358965	C6965	m5C	C12	5'-GGUGGCUGGGCCCAGCAGG-3'	....((((....))))... ( -4.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	30872485	19	chr11:72003119-72003137	NUMA1	HGNC:8059	ENSG00000137497	GGUGGCUGGGCCCAGCAGG
hsa_m5C_2283	chr1	1561202	1561203	-	ENST00000359060	C3821	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr1:1561194-1561208	SSU72	HGNC:25016	ENSG00000160075	GGAGGCUGAGGCAGG
hsa_m5C_2284	chr1	1561196	1561197	-	ENST00000359060	C3827	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr1:1561194-1561208	SSU72	HGNC:25016	ENSG00000160075	GGAGGCUGAGGCAGG
hsa_m5C_2285	chr12	20369639	20369640	+	ENST00000359062	C1104	m5C	C32	5'-GGGGGCGUCUUCCCGGGGCCUCGGGGAGGUGCUCCCGGGG-3'	((((((((((((((((....)))))))))))))))).... (-27.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	40	chr12:20369609-20369648	PDE3A	HGNC:8778	ENSG00000172572	GGGGGCGUCUUCCCGGGGCCUCGGGGAGGUGCUCCCGGGG
hsa_m5C_2286	chr12	20369641	20369642	+	ENST00000359062	C1106	m5C	C34	5'-GGGGGCGUCUUCCCGGGGCCUCGGGGAGGUGCUCCCGGGG-3'	((((((((((((((((....)))))))))))))))).... (-27.20)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	40	chr12:20369609-20369648	PDE3A	HGNC:8778	ENSG00000172572	GGGGGCGUCUUCCCGGGGCCUCGGGGAGGUGCUCCCGGGG
hsa_m5C_2287	chr12	20369642	20369643	+	ENST00000359062	C1107	m5C	C35	5'-GGGGGCGUCUUCCCGGGGCCUCGGGGAGGUGCUCCCGGGG-3'	((((((((((((((((....)))))))))))))))).... (-27.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	40	chr12:20369609-20369648	PDE3A	HGNC:8778	ENSG00000172572	GGGGGCGUCUUCCCGGGGCCUCGGGGAGGUGCUCCCGGGG
hsa_m5C_2288	chr12	20369643	20369644	+	ENST00000359062	C1108	m5C	C36	5'-GGGGGCGUCUUCCCGGGGCCUCGGGGAGGUGCUCCCGGGG-3'	((((((((((((((((....)))))))))))))))).... (-27.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	40	chr12:20369609-20369648	PDE3A	HGNC:8778	ENSG00000172572	GGGGGCGUCUUCCCGGGGCCUCGGGGAGGUGCUCCCGGGG
hsa_m5C_2289	chr22	37688987	37688988	+	ENST00000359114	C427	m5C	C30	5'-GGGGGCCCGGCUGCUCGGGCUGACCCCACCUGAG^GGAGGGG-3'	((((((((((....))))))...)))).(((.....))).. (-19.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	41	chr22:37688959-37688992;37690697-37690703	NOL12	HGNC:28585	ENSG00000273899	GGGGGCCCGGCUGCUCGGGCUGACCCCACCUGAGGGAGGGG
hsa_m5C_2290	chr16	69762336	69762337	+	ENST00000359154	C6	m5C	C3	5'-GGCGGUGGAAGG-3'	NA	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	12	chr16:69762335-69762346	WWP2	HGNC:16804	ENSG00000198373	GGCGGUGGAAGG
hsa_m5C_2291	chr6	27133270	27133271	+	ENST00000359193	C229	m5C	C9	5'-GGAACUGGCGGGCAACGCGG-3'	.......(((.....))).. ( -4.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	20	chr6:27133263-27133282	H2AC11	HGNC:4737	ENSG00000196787	GGAACUGGCGGGCAACGCGG
hsa_m5C_2292	chr6	27133274	27133275	+	ENST00000359193	C233	m5C	C13	5'-GGAACUGGCGGGCAACGCGG-3'	.......(((.....))).. ( -4.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	20	chr6:27133263-27133282	H2AC11	HGNC:4737	ENSG00000196787	GGAACUGGCGGGCAACGCGG
hsa_m5C_2293	chr1	36342146	36342147	-	ENST00000359297	C2314	m5C	C28	5'-GGGGAGUUGAGGUUGGCUGGAGGGGGUCAGGG-3'	............((((((......)))))).. ( -4.80)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	32	chr1:36342143-36342174	STK40	HGNC:21373	ENSG00000196182	GGGGAGUUGAGGUUGGCUGGAGGGGGUCAGGG
hsa_m5C_2294	chr19	507513	507514	+	ENST00000359315	C18	m5C	C6	5'-GGCGGCAGUGGAGAAGCGG-3'	.((............)).. ( -0.60)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr19:507509-507527	TPGS1	HGNC:25058	ENSG00000141933	GGCGGCAGUGGAGAAGCGG
hsa_m5C_2295	chr7	152648790	152648791	-	ENST00000359321	C756	m5C	C8	5'-GGCAUGGCAGCAACUGGUGAAGCACAGG-3'	.((......))..(((........))). ( -3.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	28	chr7:152648771-152648798	XRCC2	HGNC:12829	ENSG00000196584	GGCAUGGCAGCAACUGGUGAAGCACAGG
hsa_m5C_2296	chr7	152648787	152648788	-	ENST00000359321	C759	m5C	C11	5'-GGCAUGGCAGCAACUGGUGAAGCACAGG-3'	.((......))..(((........))). ( -3.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	28	chr7:152648771-152648798	XRCC2	HGNC:12829	ENSG00000196584	GGCAUGGCAGCAACUGGUGAAGCACAGG
hsa_m5C_2297	chr7	152648773	152648774	-	ENST00000359321	C773	m5C	C25	5'-GGCAUGGCAGCAACUGGUGAAGCACAGG-3'	.((......))..(((........))). ( -3.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	28	chr7:152648771-152648798	XRCC2	HGNC:12829	ENSG00000196584	GGCAUGGCAGCAACUGGUGAAGCACAGG
hsa_m5C_2298	chr1	167722176	167722177	+	ENST00000359523	C196	m5C	C11	5'-GGAGCCGGGGCGG-3'	....(((...))) ( -0.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	13	chr1:167722167-167722179	MPZL1	HGNC:7226	ENSG00000197965	GGAGCCGGGGCGG
hsa_m5C_2299	chr6	39190766	39190767	-	ENST00000359534	C1987	m5C	C13	5'-GGGAGUGGGGGGCCAGGG-3'	.....(((....)))... ( -2.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	18	chr6:39190762-39190779	KCNK5	HGNC:6280	ENSG00000164626	GGGAGUGGGGGGCCAGGG
hsa_m5C_2300	chr16	10531057	10531058	-	ENST00000359543	C2461	m5C	C6	5'-GGAGGCGGAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	11	chr16:10531053-10531063	EMP2	HGNC:3334	ENSG00000213853	GGAGGCGGAGG
hsa_m5C_2301	chr16	10531089	10531090	-	ENST00000359543	C2429	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr16:10531081-10531095	EMP2	HGNC:3334	ENSG00000213853	GGAGGCUGAGGCAGG
hsa_m5C_2302	chr14	22872205	22872206	+	ENST00000359591	C467	m5C	C7	5'-GGGAGGCGGCACCAGGGAGCCUGGGCGCCCGGG-3'	....(((.((.(((((...)))))))))).... (-14.60)	loop	mRNA	HeLa,With in vitro transcribed m5C spike-ins;HeLa,siControl;HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	33	chr14:22872200-22872232	LRP10	HGNC:14553	ENSG00000197324	GGGAGGCGGCACCAGGGAGCCUGGGCGCCCGGG
hsa_m5C_2303	chr14	22872208	22872209	+	ENST00000359591	C470	m5C	C10	5'-GGGAGGCGGCACCAGGGAGCCUGGGCGCCCGGG-3'	....(((.((.(((((...)))))))))).... (-14.60)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	33	chr14:22872200-22872232	LRP10	HGNC:14553	ENSG00000197324	GGGAGGCGGCACCAGGGAGCCUGGGCGCCCGGG
hsa_m5C_2304	chr1	45206480	45206481	-	ENST00000359600	C125	m5C	C13	5'-GGCCGGCUGGCUCGCGG-3'	((((....))))..... ( -4.30)	loop	mRNA	HeLa	BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	31061524	17	chr1:45206477-45206493	ZSWIM5	HGNC:29299	ENSG00000162415	GGCCGGCUGGCUCGCGG
hsa_m5C_2305	chr21	45456807	45456808	+	ENST00000359759	C1278	m5C	C9	5'-GGCGGGGGCCGG-3'	(((....))).. ( -5.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	12	chr21:45456800-45456811	COL18A1	HGNC:2195	ENSG00000182871	GGCGGGGGCCGG
hsa_m5C_2306	chr22	35607304	35607305	-	ENST00000359787	C629	m5C	C14	5'-GGAGCUGGGCUUCCAGGGCUAGG-3'	((..((((....))))..))... ( -5.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	23	chr22:35607296-35607318	MB	HGNC:6915	ENSG00000198125	GGAGCUGGGCUUCCAGGGCUAGG
hsa_m5C_2307	chr19	17309606	17309607	+	ENST00000359866	C45	m5C	C9	5'-GGUGGCGGCGG-3'	NA	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr19:17309599-17309609	DDA1	HGNC:28360	ENSG00000130311	GGUGGCGGCGG
hsa_m5C_2308	chr14	96284919	96284920	-	ENST00000359933	C7437	m5C	C3	5'-GGCUUGUUAGGAAUGUGUGGAAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	24	chr14:96284899-96284922	ATG2B	HGNC:20187	ENSG00000066739	GGCUUGUUAGGAAUGUGUGGAAGG
hsa_m5C_2309	chr14	96363105	96363106	-	ENST00000359933	C236	m5C	C22	5'-GGGGUCUCCCUGAGGGACUCCCGGCACCAAAUAGGGAUGGAGGG-3'	.(((((((.....)))))))((..((((......)).))..)). (-13.00)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	44	chr14:96363084-96363127	ATG2B	HGNC:20187	ENSG00000066739	GGGGUCUCCCUGAGGGACUCCCGGCACCAAAUAGGGAUGGAGGG
hsa_m5C_2310	chr12	121223003	121223004	+	ENST00000359949	C633	m5C	C6	5'-GGUGGCGGCCUGG-3'	(((....)))... ( -2.50)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	13	chr12:121222999-121223011	P2RX4	HGNC:8535	ENSG00000135124	GGUGGCGGCCUGG
hsa_m5C_2311	chr8	144808358	144808359	+	ENST00000359971	C1513	m5C	C9	5'-GGGGAGGACACAGAGGGCAGGCGGGCGCCCUGUUGGG-3'	..........((((((((........))))).))).. ( -9.90)	bulge	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	37	chr8:144808351-144808387	ZNF517	HGNC:27984	ENSG00000197363	GGGGAGGACACAGAGGGCAGGCGGGCGCCCUGUUGGG
hsa_m5C_2312	chr8	144807419	144807420	+	ENST00000359971	C574	m5C	C22	5'-GGUUCUGCAGGAAGACCUGGGCCGG-3'	((((...((((....)))))))).. ( -7.30)	loop	mRNA	T24;Testis,T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr8:144807399-144807423	ZNF517	HGNC:27984	ENSG00000197363	GGUUCUGCAGGAAGACCUGGGCCGG
hsa_m5C_2313	chr8	144807420	144807421	+	ENST00000359971	C575	m5C	C23	5'-GGUUCUGCAGGAAGACCUGGGCCGG-3'	((((...((((....)))))))).. ( -7.30)	loop	mRNA	T24;Testis,T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr8:144807399-144807423	ZNF517	HGNC:27984	ENSG00000197363	GGUUCUGCAGGAAGACCUGGGCCGG
hsa_m5C_2314	chr1	46513986	46513987	+	ENST00000360032	C2821	m5C	C6	5'-GGAGGCCAAGGCAGG-3'	....((....))... ( -1.50)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr1:46513982-46513996	DMBX1	HGNC:19026	ENSG00000197587	GGAGGCCAAGGCAGG
hsa_m5C_2315	chr17	413428	413429	+	ENST00000360127	C604	m5C	C9	5'-GGAGAAAACGGUACCGGUGCUUGG-3'	.(((....((....))...))).. ( -1.10)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr17:413421-413444	LIAT1	HGNC:33800	ENSG00000187624	GGAGAAAACGGUACCGGUGCUUGG
hsa_m5C_2316	chr8	33500354	33500355	+	ENST00000360128	C2654	m5C	C5	5'-GGUCCAGGAGAAUCAGGCAGUCUGUGG-3'	...((((((...........))).))) ( -1.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr8:33500351-33500377	MAK16	HGNC:13703	ENSG00000198042	GGUCCAGGAGAAUCAGGCAGUCUGUGG
hsa_m5C_2317	chr2	27070110	27070111	+	ENST00000360131	C2681	m5C	C21	5'-G^GCUGCCUCAGGCCAGGCCCCCACGG-3'	(((((((...)))..))))....... ( -7.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chr2:27069706-27069706;27070092-27070116	AGBL5	HGNC:26147	ENSG00000084693	GGCUGCCUCAGGCCAGGCCCCCACGG
hsa_m5C_2318	chr14	102011928	102011929	+	ENST00000360184	C6792	m5C	C8	5'-GGUGGGGCCCUCGGGAAGUGGG-3'	.......(((.........))) ( -2.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr14:102011922-102011943	DYNC1H1	HGNC:2961	ENSG00000197102	GGUGGGGCCCUCGGGAAGUGGG
hsa_m5C_2319	chr14	102011929	102011930	+	ENST00000360184	C6793	m5C	C9	5'-GGUGGGGCCCUCGGGAAGUGGG-3'	.......(((.........))) ( -2.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr14:102011922-102011943	DYNC1H1	HGNC:2961	ENSG00000197102	GGUGGGGCCCUCGGGAAGUGGG
hsa_m5C_2320	chr14	102011932	102011933	+	ENST00000360184	C6796	m5C	C12	5'-GGUGGGGCCCUCGGGAAGUGGG-3'	.......(((.........))) ( -2.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr14:102011922-102011943	DYNC1H1	HGNC:2961	ENSG00000197102	GGUGGGGCCCUCGGGAAGUGGG
hsa_m5C_2321	chr7	102248718	102248719	+	ENST00000360264	C4248	m5C	C8	5'-GGAAGGCCCGGGG-3'	((.....)).... ( -0.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	13	chr7:102248712-102248724	CUX1	HGNC:2557	ENSG00000257923	GGAAGGCCCGGGG
hsa_m5C_2322	chr7	102248917	102248918	+	ENST00000360264	C4447	m5C	C14	5'-GGCCUCCCCGAGGCCGCGGGCGCCCGG-3'	((((((...)))))).(((....))). (-13.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr7:102248905-102248931	CUX1	HGNC:2557	ENSG00000257923	GGCCUCCCCGAGGCCGCGGGCGCCCGG
hsa_m5C_2323	chr7	102201837	102201838	+	ENST00000360264	C2594	m5C	C4	5'-GGGCGGCGGGAAAGAGAAGGGCAGCGG-3'	..((.((.............)).)).. ( -3.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr7:102201835-102201861	CUX1	HGNC:2557	ENSG00000257923	GGGCGGCGGGAAAGAGAAGGGCAGCGG
hsa_m5C_2324	chr7	102248816	102248817	+	ENST00000360264	C4346	m5C	C10	5'-GGGGGAGGGCCCCGCGG-3'	((((.....)))).... ( -8.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr7:102248808-102248824	CUX1	HGNC:2557	ENSG00000257923	GGGGGAGGGCCCCGCGG
hsa_m5C_2325	chr7	102248817	102248818	+	ENST00000360264	C4347	m5C	C11	5'-GGGGGAGGGCCCCGCGG-3'	((((.....)))).... ( -8.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr7:102248808-102248824	CUX1	HGNC:2557	ENSG00000257923	GGGGGAGGGCCCCGCGG
hsa_m5C_2326	chr7	102248818	102248819	+	ENST00000360264	C4348	m5C	C12	5'-GGGGGAGGGCCCCGCGG-3'	((((.....)))).... ( -8.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr7:102248808-102248824	CUX1	HGNC:2557	ENSG00000257923	GGGGGAGGGCCCCGCGG
hsa_m5C_2327	chr7	102248819	102248820	+	ENST00000360264	C4349	m5C	C13	5'-GGGGGAGGGCCCCGCGG-3'	((((.....)))).... ( -8.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr7:102248808-102248824	CUX1	HGNC:2557	ENSG00000257923	GGGGGAGGGCCCCGCGG
hsa_m5C_2328	chr6	35079535	35079536	+	ENST00000360359	C2452	m5C	C22	5'-G^GUGAAGGCUCUGGGUUAUGACGG-3'	.((...((((...))))...)).. ( -0.60)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	24	chr6:35078656-35078656;35079516-35079538	ANKS1A	HGNC:20961	ENSG00000064999	GGUGAAGGCUCUGGGUUAUGACGG
hsa_m5C_2329	chr16	67286468	67286469	+	ENST00000360461	C5092	m5C	C7	5'-GGGGACCACCUGGACCUGG-3'	.(((.((....)).))).. ( -4.10)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	19	chr16:67286463-67286481	PLEKHG4	HGNC:24501	ENSG00000196155	GGGGACCACCUGGACCUGG
hsa_m5C_2330	chr13	110473020	110473021	+	ENST00000360467	C2585	m5C	C13	5'-GGGCCAGAUGGGCCCCCUGGGGAAAGGGG-3'	.((((.....))))((((......)))). (-13.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	29	chr13:110473009-110473037	COL4A2	HGNC:2203	ENSG00000134871	GGGCCAGAUGGGCCCCCUGGGGAAAGGGG
hsa_m5C_2331	chr13	110473023	110473024	+	ENST00000360467	C2588	m5C	C16	5'-GGGCCAGAUGGGCCCCCUGGGGAAAGGGG-3'	.((((.....))))((((......)))). (-13.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	29	chr13:110473009-110473037	COL4A2	HGNC:2203	ENSG00000134871	GGGCCAGAUGGGCCCCCUGGGGAAAGGGG
hsa_m5C_2332	chr1	31796622	31796623	-	ENST00000360482	C2339	m5C	C25	5'-GGGCGAAGUGGAGAUUCAGCGGGACAUGG-3'	..((..(((....)))..))......... ( -2.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	29	chr1:31796619-31796647	SPOCD1	HGNC:26338	ENSG00000134668	GGGCGAAGUGGAGAUUCAGCGGGACAUGG
hsa_m5C_2333	chr22	49963042	49963043	+	ENST00000360612	C1073	m5C	C23	5'-GGAUGCUGGGGGCUGACGGGGGCGUCCCGG-3'	.....(((((((((......))).)))))) (-11.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	30	chr22:49963021-49963050	PIM3	HGNC:19310	ENSG00000198355	GGAUGCUGGGGGCUGACGGGGGCGUCCCGG
hsa_m5C_2334	chr22	49963045	49963046	+	ENST00000360612	C1076	m5C	C26	5'-GGAUGCUGGGGGCUGACGGGGGCGUCCCGG-3'	.....(((((((((......))).)))))) (-11.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	30	chr22:49963021-49963050	PIM3	HGNC:19310	ENSG00000198355	GGAUGCUGGGGGCUGACGGGGGCGUCCCGG
hsa_m5C_2335	chr22	49963046	49963047	+	ENST00000360612	C1077	m5C	C27	5'-GGAUGCUGGGGGCUGACGGGGGCGUCCCGG-3'	.....(((((((((......))).)))))) (-11.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	30	chr22:49963021-49963050	PIM3	HGNC:19310	ENSG00000198355	GGAUGCUGGGGGCUGACGGGGGCGUCCCGG
hsa_m5C_2336	chr19	5720058	5720059	-	ENST00000360614	C88	m5C	C3	5'-GGCCGCCGCCGGGGGGCGGG-3'	.(((.((....)).)))... (-10.60)	bulge	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	20	chr19:5720042-5720061	LONP1	HGNC:9479	ENSG00000196365	GGCCGCCGCCGGGGGGCGGG
hsa_m5C_2337	chr19	5720057	5720058	-	ENST00000360614	C89	m5C	C4	5'-GGCCGCCGCCGGGGGGCGGG-3'	.(((.((....)).)))... (-10.60)	bulge	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	20	chr19:5720042-5720061	LONP1	HGNC:9479	ENSG00000196365	GGCCGCCGCCGGGGGGCGGG
hsa_m5C_2338	chr19	5720055	5720056	-	ENST00000360614	C91	m5C	C6	5'-GGCCGCCGCCGGGGGGCGGG-3'	.(((.((....)).)))... (-10.60)	bulge	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	20	chr19:5720042-5720061	LONP1	HGNC:9479	ENSG00000196365	GGCCGCCGCCGGGGGGCGGG
hsa_m5C_2339	chr19	5720054	5720055	-	ENST00000360614	C92	m5C	C7	5'-GGCCGCCGCCGGGGGGCGGG-3'	.(((.((....)).)))... (-10.60)	bulge	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	20	chr19:5720042-5720061	LONP1	HGNC:9479	ENSG00000196365	GGCCGCCGCCGGGGGGCGGG
hsa_m5C_2340	chr19	5720052	5720053	-	ENST00000360614	C94	m5C	C9	5'-GGCCGCCGCCGGGGGGCGGG-3'	.(((.((....)).)))... (-10.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	20	chr19:5720042-5720061	LONP1	HGNC:9479	ENSG00000196365	GGCCGCCGCCGGGGGGCGGG
hsa_m5C_2341	chr20	2840450	2840451	-	ENST00000360652	C205	m5C	C3	5'-GGCGCCGAGGCCUGAGG-3'	(((......)))..... ( -4.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	17	chr20:2840437-2840453	PCED1A	HGNC:16212	ENSG00000132635	GGCGCCGAGGCCUGAGG
hsa_m5C_2342	chr20	2840448	2840449	-	ENST00000360652	C207	m5C	C5	5'-GGCGCCGAGGCCUGAGG-3'	(((......)))..... ( -4.90)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr20:2840437-2840453	PCED1A	HGNC:16212	ENSG00000132635	GGCGCCGAGGCCUGAGG
hsa_m5C_2343	chr20	2840447	2840448	-	ENST00000360652	C208	m5C	C6	5'-GGCGCCGAGGCCUGAGG-3'	(((......)))..... ( -4.90)	bulge	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	17	chr20:2840437-2840453	PCED1A	HGNC:16212	ENSG00000132635	GGCGCCGAGGCCUGAGG
hsa_m5C_2344	chrX	85247583	85247584	+	ENST00000360700	C898	m5C	C10	5'-GGAUUCAGGCGGUGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chrX:85247575-85247589	ZNF711	HGNC:13128	ENSG00000147180	GGAUUCAGGCGGUGG
hsa_m5C_2345	chrX	54560804	54560805	+	ENST00000360845	C2200	m5C	C6	5'-GGAGGCCGAGGUGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969	14	chrX:54560800-54560813	GNL3L	HGNC:25553	ENSG00000130119	GGAGGCCGAGGUGG
hsa_m5C_2346	chrX	54560805	54560806	+	ENST00000360845	C2201	m5C	C7	5'-GGAGGCCGAGGUGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	14	chrX:54560800-54560813	GNL3L	HGNC:25553	ENSG00000130119	GGAGGCCGAGGUGG
hsa_m5C_2347	chrX	54562723	54562724	+	ENST00000360845	C4119	m5C	C6	5'-GGAGGCGGAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	11	chrX:54562719-54562729	GNL3L	HGNC:25553	ENSG00000130119	GGAGGCGGAGG
hsa_m5C_2348	chrX	54560938	54560939	+	ENST00000360845	C2334	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chrX:54560934-54560948	GNL3L	HGNC:25553	ENSG00000130119	GGAGGCUGAGGCAGG
hsa_m5C_2349	chrX	54560944	54560945	+	ENST00000360845	C2340	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chrX:54560934-54560948	GNL3L	HGNC:25553	ENSG00000130119	GGAGGCUGAGGCAGG
hsa_m5C_2350	chrX	54561582	54561583	+	ENST00000360845	C2978	m5C	C19	5'-GGAGGCUUUAGGGGGAAGCCCCGUCUUGGGGGCAUUUCUGGG-3'	...........(((((.(((((......))))).)))))... (-14.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	42	chrX:54561565-54561606	GNL3L	HGNC:25553	ENSG00000130119	GGAGGCUUUAGGGGGAAGCCCCGUCUUGGGGGCAUUUCUGGG
hsa_m5C_2351	chrX	54561583	54561584	+	ENST00000360845	C2979	m5C	C20	5'-GGAGGCUUUAGGGGGAAGCCCCGUCUUGGGGGCAUUUCUGGG-3'	...........(((((.(((((......))))).)))))... (-14.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	42	chrX:54561565-54561606	GNL3L	HGNC:25553	ENSG00000130119	GGAGGCUUUAGGGGGAAGCCCCGUCUUGGGGGCAUUUCUGGG
hsa_m5C_2352	chrX	54561584	54561585	+	ENST00000360845	C2980	m5C	C21	5'-GGAGGCUUUAGGGGGAAGCCCCGUCUUGGGGGCAUUUCUGGG-3'	...........(((((.(((((......))))).)))))... (-14.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	42	chrX:54561565-54561606	GNL3L	HGNC:25553	ENSG00000130119	GGAGGCUUUAGGGGGAAGCCCCGUCUUGGGGGCAUUUCUGGG
hsa_m5C_2353	chr20	63935630	63935631	+	ENST00000360864	C4869	m5C	C32	5'-GGGCGGCCUGGGAAGGGGCCCUGUGCUGGCCCCGGG-3'	(((((((..(((......)))...))).)))).... (-14.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	36	chr20:63935600-63935635	DNAJC5	HGNC:16235	ENSG00000101152	GGGCGGCCUGGGAAGGGGCCCUGUGCUGGCCCCGGG
hsa_m5C_2354	chr20	63935631	63935632	+	ENST00000360864	C4870	m5C	C33	5'-GGGCGGCCUGGGAAGGGGCCCUGUGCUGGCCCCGGG-3'	(((((((..(((......)))...))).)))).... (-14.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	36	chr20:63935600-63935635	DNAJC5	HGNC:16235	ENSG00000101152	GGGCGGCCUGGGAAGGGGCCCUGUGCUGGCCCCGGG
hsa_m5C_2355	chr20	63935677	63935678	+	ENST00000360864	C4916	m5C	C5	5'-GGGGCUGGGCCCGG-3'	.((((...)))).. ( -6.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	14	chr20:63935674-63935687	DNAJC5	HGNC:16235	ENSG00000101152	GGGGCUGGGCCCGG
hsa_m5C_2356	chr20	63935682	63935683	+	ENST00000360864	C4921	m5C	C10	5'-GGGGCUGGGCCCGG-3'	.((((...)))).. ( -6.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	14	chr20:63935674-63935687	DNAJC5	HGNC:16235	ENSG00000101152	GGGGCUGGGCCCGG
hsa_m5C_2357	chr20	63935683	63935684	+	ENST00000360864	C4922	m5C	C11	5'-GGGGCUGGGCCCGG-3'	.((((...)))).. ( -6.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	14	chr20:63935674-63935687	DNAJC5	HGNC:16235	ENSG00000101152	GGGGCUGGGCCCGG
hsa_m5C_2358	chr20	63935684	63935685	+	ENST00000360864	C4923	m5C	C12	5'-GGGGCUGGGCCCGG-3'	.((((...)))).. ( -6.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	14	chr20:63935674-63935687	DNAJC5	HGNC:16235	ENSG00000101152	GGGGCUGGGCCCGG
hsa_m5C_2359	chr7	2379415	2379416	+	ENST00000360876	C2459	m5C	C4	5'-GGACAGCAACGUGGACGACUGGGAAGAGG-3'	...(((...((....)).)))........ ( -1.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr7:2379413-2379441	EIF3B	HGNC:3280	ENSG00000106263	GGACAGCAACGUGGACGACUGGGAAGAGG
hsa_m5C_2360	chr7	2380628	2380629	+	ENST00000360876	C2980	m5C	C4	5'-GGACGUGUCCCGGAGACCCACCGGGAGGG-3'	.......((((((.......))))))... (-10.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr7:2380626-2380654	EIF3B	HGNC:3280	ENSG00000106263	GGACGUGUCCCGGAGACCCACCGGGAGGG
hsa_m5C_2361	chr7	2380635	2380636	+	ENST00000360876	C2987	m5C	C11	5'-GGACGUGUCCCGGAGACCCACCGGGAGGG-3'	.......((((((.......))))))... (-10.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr7:2380626-2380654	EIF3B	HGNC:3280	ENSG00000106263	GGACGUGUCCCGGAGACCCACCGGGAGGG
hsa_m5C_2362	chr7	2355038	2355039	+	ENST00000360876	C213	m5C	C12	5'-GGCCCGCGGGGCCCGGCGCUCCGG-3'	(((((...)))))(((....))). (-10.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr7:2355028-2355051	EIF3B	HGNC:3280	ENSG00000106263	GGCCCGCGGGGCCCGGCGCUCCGG
hsa_m5C_2363	chr17	48908544	48908545	+	ENST00000360943	C139	m5C	C7	5'-GGGCGCCGGGGCGGCGGGCCCCGGGG-3'	.....(((((((.....))))))).. (-17.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	26	chr17:48908539-48908564	UBE2Z	HGNC:25847	ENSG00000159202	GGGCGCCGGGGCGGCGGGCCCCGGGG
hsa_m5C_2364	chr17	48908549	48908550	+	ENST00000360943	C144	m5C	C12	5'-GGGCGCCGGGGCGGCGGGCCCCGGGG-3'	.....(((((((.....))))))).. (-17.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	26	chr17:48908539-48908564	UBE2Z	HGNC:25847	ENSG00000159202	GGGCGCCGGGGCGGCGGGCCCCGGGG
hsa_m5C_2365	chr17	48908556	48908557	+	ENST00000360943	C151	m5C	C19	5'-GGGCGCCGGGGCGGCGGGCCCCGGGG-3'	.....(((((((.....))))))).. (-17.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	26	chr17:48908539-48908564	UBE2Z	HGNC:25847	ENSG00000159202	GGGCGCCGGGGCGGCGGGCCCCGGGG
hsa_m5C_2366	chr17	48908557	48908558	+	ENST00000360943	C152	m5C	C20	5'-GGGCGCCGGGGCGGCGGGCCCCGGGG-3'	.....(((((((.....))))))).. (-17.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	26	chr17:48908539-48908564	UBE2Z	HGNC:25847	ENSG00000159202	GGGCGCCGGGGCGGCGGGCCCCGGGG
hsa_m5C_2367	chr17	48908559	48908560	+	ENST00000360943	C154	m5C	C22	5'-GGGCGCCGGGGCGGCGGGCCCCGGGG-3'	.....(((((((.....))))))).. (-17.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	26	chr17:48908539-48908564	UBE2Z	HGNC:25847	ENSG00000159202	GGGCGCCGGGGCGGCGGGCCCCGGGG
hsa_m5C_2368	chr17	48908673	48908674	+	ENST00000360943	C268	m5C	C16	5'-GGGCGGGGCCGGGGGCCCGGGG-3'	.....(((((...))))).... ( -9.50)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	22	chr17:48908659-48908680	UBE2Z	HGNC:25847	ENSG00000159202	GGGCGGGGCCGGGGGCCCGGGG
hsa_m5C_2369	chr17	48908674	48908675	+	ENST00000360943	C269	m5C	C17	5'-GGGCGGGGCCGGGGGCCCGGGG-3'	.....(((((...))))).... ( -9.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	22	chr17:48908659-48908680	UBE2Z	HGNC:25847	ENSG00000159202	GGGCGGGGCCGGGGGCCCGGGG
hsa_m5C_2370	chr17	48908675	48908676	+	ENST00000360943	C270	m5C	C18	5'-GGGCGGGGCCGGGGGCCCGGGG-3'	.....(((((...))))).... ( -9.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	22	chr17:48908659-48908680	UBE2Z	HGNC:25847	ENSG00000159202	GGGCGGGGCCGGGGGCCCGGGG
hsa_m5C_2371	chr17	48916089	48916090	+	ENST00000360943	C690	m5C	C17	5'-GG^UACAUGGACUGGACCUGCCUGG-3'	((((...((......))))))... ( -3.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr17:48913020-48913021;48916076-48916097	UBE2Z	HGNC:25847	ENSG00000159202	GGUACAUGGACUGGACCUGCCUGG
hsa_m5C_2372	chr14	21091037	21091038	-	ENST00000360947	C2094	m5C	C10	5'-GGAGCGGGGCCGGCCCCGG-3'	....(((((....))))). ( -9.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	19	chr14:21091029-21091047	ZNF219	HGNC:13011	ENSG00000165804	GGAGCGGGGCCGGCCCCGG
hsa_m5C_2373	chr14	21091036	21091037	-	ENST00000360947	C2095	m5C	C11	5'-GGAGCGGGGCCGGCCCCGG-3'	....(((((....))))). ( -9.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	19	chr14:21091029-21091047	ZNF219	HGNC:13011	ENSG00000165804	GGAGCGGGGCCGGCCCCGG
hsa_m5C_2374	chr14	21091033	21091034	-	ENST00000360947	C2098	m5C	C14	5'-GGAGCGGGGCCGGCCCCGG-3'	....(((((....))))). ( -9.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	19	chr14:21091029-21091047	ZNF219	HGNC:13011	ENSG00000165804	GGAGCGGGGCCGGCCCCGG
hsa_m5C_2375	chr14	21091032	21091033	-	ENST00000360947	C2099	m5C	C15	5'-GGAGCGGGGCCGGCCCCGG-3'	....(((((....))))). ( -9.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	19	chr14:21091029-21091047	ZNF219	HGNC:13011	ENSG00000165804	GGAGCGGGGCCGGCCCCGG
hsa_m5C_2376	chr14	21091031	21091032	-	ENST00000360947	C2100	m5C	C16	5'-GGAGCGGGGCCGGCCCCGG-3'	....(((((....))))). ( -9.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	19	chr14:21091029-21091047	ZNF219	HGNC:13011	ENSG00000165804	GGAGCGGGGCCGGCCCCGG
hsa_m5C_2377	chr14	21091030	21091031	-	ENST00000360947	C2101	m5C	C17	5'-GGAGCGGGGCCGGCCCCGG-3'	....(((((....))))). ( -9.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	19	chr14:21091029-21091047	ZNF219	HGNC:13011	ENSG00000165804	GGAGCGGGGCCGGCCCCGG
hsa_m5C_2378	chr14	21090679	21090680	-	ENST00000360947	C2452	m5C	C10	5'-GGCUAGGGGCCGCCGG-3'	((((...))))..... ( -4.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr14:21090674-21090689	ZNF219	HGNC:13011	ENSG00000165804	GGCUAGGGGCCGCCGG
hsa_m5C_2379	chr16	75223155	75223156	+	ENST00000361017	C272	m5C	C4	5'-GGUCGUGGCUGGGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	14	chr16:75223153-75223166	CTRB1	HGNC:2521	ENSG00000168925	GGUCGUGGCUGGGG
hsa_m5C_2380	chr16	75223160	75223161	+	ENST00000361017	C277	m5C	C9	5'-GGUCGUGGCUGGGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	14	chr16:75223153-75223166	CTRB1	HGNC:2521	ENSG00000168925	GGUCGUGGCUGGGG
hsa_m5C_2381	chr1	156526378	156526379	-	ENST00000361170	C5039	m5C	C9	5'-GGACUGGGCAAGGCCCAGG-3'	...((((((...)))))). (-10.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	19	chr1:156526369-156526387	IQGAP3	HGNC:20669	ENSG00000183856	GGACUGGGCAAGGCCCAGG
hsa_m5C_2382	chr1	156526373	156526374	-	ENST00000361170	C5044	m5C	C14	5'-GGACUGGGCAAGGCCCAGG-3'	...((((((...)))))). (-10.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	19	chr1:156526369-156526387	IQGAP3	HGNC:20669	ENSG00000183856	GGACUGGGCAAGGCCCAGG
hsa_m5C_2383	chr1	156526372	156526373	-	ENST00000361170	C5045	m5C	C15	5'-GGACUGGGCAAGGCCCAGG-3'	...((((((...)))))). (-10.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	19	chr1:156526369-156526387	IQGAP3	HGNC:20669	ENSG00000183856	GGACUGGGCAAGGCCCAGG
hsa_m5C_2384	chr1	156526371	156526372	-	ENST00000361170	C5046	m5C	C16	5'-GGACUGGGCAAGGCCCAGG-3'	...((((((...)))))). (-10.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	19	chr1:156526369-156526387	IQGAP3	HGNC:20669	ENSG00000183856	GGACUGGGCAAGGCCCAGG
hsa_m5C_2385	chr1	156554324	156554325	-	ENST00000361170	C1394	m5C	C3	5'-GGCCCUGGAGGCCCGG-3'	((((.....))))... ( -6.10)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	16	chr1:156554312-156554327	IQGAP3	HGNC:20669	ENSG00000183856	GGCCCUGGAGGCCCGG
hsa_m5C_2386	chr1	156554323	156554324	-	ENST00000361170	C1395	m5C	C4	5'-GGCCCUGGAGGCCCGG-3'	((((.....))))... ( -6.10)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	16	chr1:156554312-156554327	IQGAP3	HGNC:20669	ENSG00000183856	GGCCCUGGAGGCCCGG
hsa_m5C_2387	chr1	156554315	156554316	-	ENST00000361170	C1403	m5C	C12	5'-GGCCCUGGAGGCCCGG-3'	((((.....))))... ( -6.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	16	chr1:156554312-156554327	IQGAP3	HGNC:20669	ENSG00000183856	GGCCCUGGAGGCCCGG
hsa_m5C_2388	chr1	156554314	156554315	-	ENST00000361170	C1404	m5C	C13	5'-GGCCCUGGAGGCCCGG-3'	((((.....))))... ( -6.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	16	chr1:156554312-156554327	IQGAP3	HGNC:20669	ENSG00000183856	GGCCCUGGAGGCCCGG
hsa_m5C_2389	chr1	156554313	156554314	-	ENST00000361170	C1405	m5C	C14	5'-GGCCCUGGAGGCCCGG-3'	((((.....))))... ( -6.10)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	16	chr1:156554312-156554327	IQGAP3	HGNC:20669	ENSG00000183856	GGCCCUGGAGGCCCGG
hsa_m5C_2390	chr15	90969514	90969515	-	ENST00000361188	C2893	m5C	C10	5'-GGUGGGUACCCUGGCUCGG-3'	..(((((......))))). ( -3.00)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr15:90969506-90969524	PRC1	HGNC:9341	ENSG00000198901	GGUGGGUACCCUGGCUCGG
hsa_m5C_2391	chr1	153942986	153942987	-	ENST00000361217	C902	m5C	C16	5'-GGGCAGCAGAGGGGGCAGGG-3'	.....((.......)).... ( -0.30)	loop	mRNA	293T;HCT116	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;38168991	28418038;38168991	20	chr1:153942983-153943002	DENND4B	HGNC:29044	ENSG00000198837	GGGCAGCAGAGGGGGCAGGG
hsa_m5C_2392	chr1	67415231	67415232	-	ENST00000361219	C1161	m5C	C18	5'-GGCCGCCCAGGACGUGGCGG-3'	..(((((........))))) ( -7.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	20	chr1:67415230-67415249	SERBP1	HGNC:17860	ENSG00000142864	GGCCGCCCAGGACGUGGCGG
hsa_m5C_2393	chr2	182994839	182994840	-	ENST00000361354	C1147	m5C	C25	5'-GGAUGCAAUGGAAAAGUGGAUUAUCU^UUGG-3'	............((((........)))).. ( -0.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr2:182989183-182989186;182994839-182994864	NCKAP1	HGNC:7666	ENSG00000061676	GGAUGCAAUGGAAAAGUGGAUUAUCUUUGG
hsa_m5C_2394	chr2	183038123	183038124	-	ENST00000361354	C334	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF;Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	11	chr2:183038116-183038126	NCKAP1	HGNC:7666	ENSG00000061676	GGCGGCGGCGG
hsa_m5C_2395	chr2	183038120	183038121	-	ENST00000361354	C337	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF;Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	11	chr2:183038116-183038126	NCKAP1	HGNC:7666	ENSG00000061676	GGCGGCGGCGG
hsa_m5C_2396	chr2	183038117	183038118	-	ENST00000361354	C340	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	11	chr2:183038116-183038126	NCKAP1	HGNC:7666	ENSG00000061676	GGCGGCGGCGG
hsa_m5C_2397	chr2	104856232	104856233	+	ENST00000361360	C2119	m5C	C9	5'-GGGCCCGGCGGCGGCGGCGG-3'	....(((.((....)).))) ( -7.30)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr2:104856225-104856244	POU3F3	HGNC:9216	ENSG00000198914	GGGCCCGGCGGCGGCGGCGG
hsa_m5C_2398	chr2	104856235	104856236	+	ENST00000361360	C2122	m5C	C12	5'-GGGCCCGGCGGCGGCGGCGG-3'	....(((.((....)).))) ( -7.30)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr2:104856225-104856244	POU3F3	HGNC:9216	ENSG00000198914	GGGCCCGGCGGCGGCGGCGG
hsa_m5C_2399	chr2	104856238	104856239	+	ENST00000361360	C2125	m5C	C15	5'-GGGCCCGGCGGCGGCGGCGG-3'	....(((.((....)).))) ( -7.30)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr2:104856225-104856244	POU3F3	HGNC:9216	ENSG00000198914	GGGCCCGGCGGCGGCGGCGG
hsa_m5C_2400	chr2	104856241	104856242	+	ENST00000361360	C2128	m5C	C18	5'-GGGCCCGGCGGCGGCGGCGG-3'	....(((.((....)).))) ( -7.30)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr2:104856225-104856244	POU3F3	HGNC:9216	ENSG00000198914	GGGCCCGGCGGCGGCGGCGG
hsa_m5C_2401	chr1	11127757	11127758	-	ENST00000361445	C6203	m5C	C3	5'-GGCAUGAAGGCCUGGAAGAGG-3'	(((......)))......... ( -3.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	21	chr1:11127740-11127760	MTOR	HGNC:3942	ENSG00000198793	GGCAUGAAGGCCUGGAAGAGG
hsa_m5C_2402	chr10	101787368	101787369	-	ENST00000361464	C3031	m5C	C3	5'-GGCUAAUG^GCUCCCGGGG-3'	((((...))))....... ( -1.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr10:101786578-101786587;101787364-101787371	OGA	HGNC:7056	ENSG00000198408	GGCUAAUGGCUCCCGGGG
hsa_m5C_2403	chr5	139848484	139848485	-	ENST00000361474	C2215	m5C	C18	5'-GGGACCCGGACCCGGGCCCGGGCCCGGG-3'	....(((((.((((....)))).))))) (-17.20)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr5:139848475-139848502	NRG2	HGNC:7998	ENSG00000158458	GGGACCCGGACCCGGGCCCGGGCCCGGG
hsa_m5C_2404	chrX	69161946	69161947	-	ENST00000361478	C1670	m5C	C11	5'-GGCGCCGGGGCCAGUGCUGGCAGCAAUGG-3'	.(((((((........))))).))..... (-10.30)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	29	chrX:69161929-69161957	PJA1	HGNC:16648	ENSG00000181191	GGCGCCGGGGCCAGUGCUGGCAGCAAUGG
hsa_m5C_2405	chrX	69161945	69161946	-	ENST00000361478	C1671	m5C	C12	5'-GGCGCCGGGGCCAGUGCUGGCAGCAAUGG-3'	.(((((((........))))).))..... (-10.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	29	chrX:69161929-69161957	PJA1	HGNC:16648	ENSG00000181191	GGCGCCGGGGCCAGUGCUGGCAGCAAUGG
hsa_m5C_2406	chrX	69161940	69161941	-	ENST00000361478	C1676	m5C	C17	5'-GGCGCCGGGGCCAGUGCUGGCAGCAAUGG-3'	.(((((((........))))).))..... (-10.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	29	chrX:69161929-69161957	PJA1	HGNC:16648	ENSG00000181191	GGCGCCGGGGCCAGUGCUGGCAGCAAUGG
hsa_m5C_2407	chrX	69161936	69161937	-	ENST00000361478	C1680	m5C	C21	5'-GGCGCCGGGGCCAGUGCUGGCAGCAAUGG-3'	.(((((((........))))).))..... (-10.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	29	chrX:69161929-69161957	PJA1	HGNC:16648	ENSG00000181191	GGCGCCGGGGCCAGUGCUGGCAGCAAUGG
hsa_m5C_2408	chr12	111369033	111369034	-	ENST00000361483	C88	m5C	C17	5'-GGCUGCGCCGGCCCGGCCGCCCAGG-3'	(((...((((...)))).))).... ( -8.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr12:111369026-111369050	PHETA1	HGNC:26509	ENSG00000198324	GGCUGCGCCGGCCCGGCCGCCCAGG
hsa_m5C_2409	chr12	111362317	111362318	-	ENST00000361483	C1589	m5C	C21	5'-GGGCCUGCAGCUCAGAGGGUCACUGGGACUGAGGG-3'	...(((.((((((((.......))))).)))))). (-12.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	35	chr12:111362304-111362338	PHETA1	HGNC:26509	ENSG00000198324	GGGCCUGCAGCUCAGAGGGUCACUGGGACUGAGGG
hsa_m5C_2410	chr2	120797385	120797386	+	ENST00000361492	C514	m5C	C14	5'-GGAUCCUGGAGGCCGCUGG-3'	((..((....))))..... ( -0.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr2:120797373-120797391	GLI2	HGNC:4318	ENSG00000074047	GGAUCCUGGAGGCCGCUGG
hsa_m5C_2411	chr19	896594	896595	-	ENST00000361574	C1711	m5C	C12	5'-GGCUGCAGGAGCCAGGCUGGGGG-3'	((((.....)))).......... ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	23	chr19:896584-896606	R3HDM4	HGNC:28270	ENSG00000198858	GGCUGCAGGAGCCAGGCUGGGGG
hsa_m5C_2412	chr19	896589	896590	-	ENST00000361574	C1716	m5C	C17	5'-GGCUGCAGGAGCCAGGCUGGGGG-3'	((((.....)))).......... ( -6.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	23	chr19:896584-896606	R3HDM4	HGNC:28270	ENSG00000198858	GGCUGCAGGAGCCAGGCUGGGGG
hsa_m5C_2413	chr16	83959380	83959381	+	ENST00000361711	C661	m5C	C6	5'-GGGGUCUCCAUCCUGGACCAG^G-3'	..(((((.......)))))... ( -5.40)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr16:83959376-83959396;83960569-83960569	OSGIN1	HGNC:30093	ENSG00000140961	GGGGUCUCCAUCCUGGACCAGG
hsa_m5C_2414	chr10	50623748	50623749	-	ENST00000361781	C208	m5C	C9	5'-GGCGGGGGCUCCGCGAGCGGAAUUCCGG-3'	..(((((..((((....)))).))))). (-10.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	28	chr10:50623730-50623757	SGMS1	HGNC:29799	ENSG00000198964	GGCGGGGGCUCCGCGAGCGGAAUUCCGG
hsa_m5C_2415	chr10	50623746	50623747	-	ENST00000361781	C210	m5C	C11	5'-GGCGGGGGCUCCGCGAGCGGAAUUCCGG-3'	..(((((..((((....)))).))))). (-10.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	28	chr10:50623730-50623757	SGMS1	HGNC:29799	ENSG00000198964	GGCGGGGGCUCCGCGAGCGGAAUUCCGG
hsa_m5C_2416	chr10	50623745	50623746	-	ENST00000361781	C211	m5C	C12	5'-GGCGGGGGCUCCGCGAGCGGAAUUCCGG-3'	..(((((..((((....)))).))))). (-10.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	28	chr10:50623730-50623757	SGMS1	HGNC:29799	ENSG00000198964	GGCGGGGGCUCCGCGAGCGGAAUUCCGG
hsa_m5C_2417	chr10	50623743	50623744	-	ENST00000361781	C213	m5C	C14	5'-GGCGGGGGCUCCGCGAGCGGAAUUCCGG-3'	..(((((..((((....)))).))))). (-10.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	28	chr10:50623730-50623757	SGMS1	HGNC:29799	ENSG00000198964	GGCGGGGGCUCCGCGAGCGGAAUUCCGG
hsa_m5C_2418	chr1	156249439	156249440	-	ENST00000361813	C4343	m5C	C13	5'-GGGAGGAUAGCACAGGCUAGGGGCUCGGGGUGGAGG-3'	..(((..((((....))))....))).......... ( -6.80)	loop	mRNA	HeLa;liver;liver,Testis,HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;38168991	31061524;38168991	36	chr1:156249417-156249452	SMG5	HGNC:24644	ENSG00000198952	GGGAGGAUAGCACAGGCUAGGGGCUCGGGGUGGAGG
hsa_m5C_2419	chr2	74371046	74371047	-	ENST00000361874	C1093	m5C	C11	5'-GGAGCAGGUGCAGGAAUGG-3'	...((....))........ ( -0.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	19	chr2:74371039-74371057	DCTN1	HGNC:2711	ENSG00000204843	GGAGCAGGUGCAGGAAUGG
hsa_m5C_2420	chr2	74370747	74370748	-	ENST00000361874	C1239	m5C	C4	5'-GGCCACUUUGGACAAGGAGAUGG-3'	..(((((((......)))).))) ( -3.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr2:74370729-74370751	DCTN1	HGNC:2711	ENSG00000204843	GGCCACUUUGGACAAGGAGAUGG
hsa_m5C_2421	chr2	74370738	74370739	-	ENST00000361874	C1248	m5C	C13	5'-GGCCACUUUGGACAAGGAGAUGG-3'	..(((((((......)))).))) ( -3.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr2:74370729-74370751	DCTN1	HGNC:2711	ENSG00000204843	GGCCACUUUGGACAAGGAGAUGG
hsa_m5C_2422	chr15	75019378	75019379	+	ENST00000361900	C1311	m5C	C3	5'-GGCCAGGGGAGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	12	chr15:75019377-75019388	SCAMP5	HGNC:30386	ENSG00000198794	GGCCAGGGGAGG
hsa_m5C_2423	chr15	75019379	75019380	+	ENST00000361900	C1312	m5C	C4	5'-GGCCAGGGGAGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	12	chr15:75019377-75019388	SCAMP5	HGNC:30386	ENSG00000198794	GGCCAGGGGAGG
hsa_m5C_2424	chr17	48058889	48058890	+	ENST00000362042	C2184	m5C	C9	5'-GGAAGGUGCGGUUGG-3'	NA	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr17:48058882-48058896	NFE2L1	HGNC:7781	ENSG00000082641	GGAAGGUGCGGUUGG
hsa_m5C_2425	chr17	48056475	48056476	+	ENST00000362042	C1217	m5C	C5	5'-GGAGCAGGAUGUGGAGAAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	20	chr17:48056472-48056491	NFE2L1	HGNC:7781	ENSG00000082641	GGAGCAGGAUGUGGAGAAGG
hsa_m5C_2426	chr2	1620745	1620746	-	ENST00000366424	C1405	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	lncRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr2:1620737-1620751	NA	NA	ENSG00000203635	GGAGGCUGAGGCAGG
hsa_m5C_2427	chr2	1620739	1620740	-	ENST00000366424	C1411	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	lncRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr2:1620737-1620751	NA	NA	ENSG00000203635	GGAGGCUGAGGCAGG
hsa_m5C_2428	chr1	248811889	248811890	-	ENST00000366472	C1704	m5C	C5	5'-GGGCCAGGGUUCCUGGCUUGAAUCUGCCACCACGGGCCGGUUGGG-3'	((((((((...)))))))).((((.(((......))).))))... (-18.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	45	chr1:248811850-248811894	SH3BP5L	HGNC:29360	ENSG00000175137	GGGCCAGGGUUCCUGGCUUGAAUCUGCCACCACGGGCCGGUUGGG
hsa_m5C_2429	chr1	246724504	246724505	+	ENST00000366510	C97	m5C	C9	5'-GGAGGUGGCCCGG-3'	((.......)).. ( -0.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	13	chr1:246724497-246724509	SCCPDH	HGNC:24275	ENSG00000143653	GGAGGUGGCCCGG
hsa_m5C_2430	chr1	234610165	234610166	-	ENST00000366609	C13	m5C	C5	5'-GGAGCGGUCGCGGCGG-3'	...((.......)).. ( -1.20)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	16	chr1:234610155-234610170	IRF2BP2	HGNC:21729	ENSG00000168264	GGAGCGGUCGCGGCGG
hsa_m5C_2431	chr1	233379197	233379198	+	ENST00000366624	C2497	m5C	C3	5'-GGCAUCGGUGGCUCUGG-3'	.....(((.....))). ( -0.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	17	chr1:233379196-233379212	MAP3K21	HGNC:29798	ENSG00000143674	GGCAUCGGUGGCUCUGG
hsa_m5C_2432	chr1	231421483	231421484	-	ENST00000366641	C804	m5C	C3	5'-GGCUCGGCGGUGG-3'	NA	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	13	chr1:231421474-231421486	EGLN1	HGNC:1232	ENSG00000135766	GGCUCGGCGGUGG
hsa_m5C_2433	chr1	231421481	231421482	-	ENST00000366641	C806	m5C	C5	5'-GGCUCGGCGGUGG-3'	NA	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	13	chr1:231421474-231421486	EGLN1	HGNC:1232	ENSG00000135766	GGCUCGGCGGUGG
hsa_m5C_2434	chr1	231421478	231421479	-	ENST00000366641	C809	m5C	C8	5'-GGCUCGGCGGUGG-3'	NA	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	13	chr1:231421474-231421486	EGLN1	HGNC:1232	ENSG00000135766	GGCUCGGCGGUGG
hsa_m5C_2435	chr1	231241229	231241230	+	ENST00000366647	C19	m5C	C12	5'-GGCUGAGAUGGCGGCGCCCGG-3'	.((((......))))...... ( -4.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	21	chr1:231241219-231241239	GNPAT	HGNC:4416	ENSG00000116906	GGCUGAGAUGGCGGCGCCCGG
hsa_m5C_2436	chr1	231241232	231241233	+	ENST00000366647	C22	m5C	C15	5'-GGCUGAGAUGGCGGCGCCCGG-3'	.((((......))))...... ( -4.40)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	21	chr1:231241219-231241239	GNPAT	HGNC:4416	ENSG00000116906	GGCUGAGAUGGCGGCGCCCGG
hsa_m5C_2437	chr1	231241234	231241235	+	ENST00000366647	C24	m5C	C17	5'-GGCUGAGAUGGCGGCGCCCGG-3'	.((((......))))...... ( -4.40)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	21	chr1:231241219-231241239	GNPAT	HGNC:4416	ENSG00000116906	GGCUGAGAUGGCGGCGCCCGG
hsa_m5C_2438	chr1	231241235	231241236	+	ENST00000366647	C25	m5C	C18	5'-GGCUGAGAUGGCGGCGCCCGG-3'	.((((......))))...... ( -4.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	21	chr1:231241219-231241239	GNPAT	HGNC:4416	ENSG00000116906	GGCUGAGAUGGCGGCGCCCGG
hsa_m5C_2439	chr1	231241236	231241237	+	ENST00000366647	C26	m5C	C19	5'-GGCUGAGAUGGCGGCGCCCGG-3'	.((((......))))...... ( -4.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	21	chr1:231241219-231241239	GNPAT	HGNC:4416	ENSG00000116906	GGCUGAGAUGGCGGCGCCCGG
hsa_m5C_2440	chr1	231019565	231019566	-	ENST00000366654	C895	m5C	C7	5'-GGAUCUCGGUGAAAGGCCUUAGUGG-3'	.......(((.....)))....... ( -2.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr1:231019548-231019572	FAM89A	HGNC:25057	ENSG00000182118	GGAUCUCGGUGAAAGGCCUUAGUGG
hsa_m5C_2441	chr2	63056900	63056901	+	ENST00000366671	C1926	m5C	C3	5'-GGCGCGCCAGGGCUAGGCCCGCCGG-3'	((((.(((.......))).)))).. (-12.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr2:63056899-63056923	OTX1	HGNC:8521	ENSG00000115507	GGCGCGCCAGGGCUAGGCCCGCCGG
hsa_m5C_2442	chr1	230279833	230279834	+	ENST00000366672	C2135	m5C	C17	5'-GGGCGGGAGGAGGGGGCACACAUGCCCCAGGG-3'	............((((((....)))))).... (-11.30)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	32	chr1:230279818-230279849	GALNT2	HGNC:4124	ENSG00000143641	GGGCGGGAGGAGGGGGCACACAUGCCCCAGGG
hsa_m5C_2443	chr1	228745081	228745082	+	ENST00000366691	C2383	m5C	C22	5'-GGCCAGUGGACUCUGAGGACUCCUGAGG-3'	............((.(((...))).)). ( -4.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr1:228745061-228745088	RHOU	HGNC:17794	ENSG00000116574	GGCCAGUGGACUCUGAGGACUCCUGAGG
hsa_m5C_2444	chr1	228145541	228145542	+	ENST00000366730	C230	m5C	C10	5'-GGUGCUGAGCGGGCCUUCGGGAGCUGGG-3'	....((.(((...((....)).))).)) ( -5.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	28	chr1:228145533-228145560	GUK1	HGNC:4693	ENSG00000143774	GGUGCUGAGCGGGCCUUCGGGAGCUGGG
hsa_m5C_2445	chr1	228145545	228145546	+	ENST00000366730	C234	m5C	C14	5'-GGUGCUGAGCGGGCCUUCGGGAGCUGGG-3'	....((.(((...((....)).))).)) ( -5.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	28	chr1:228145533-228145560	GUK1	HGNC:4693	ENSG00000143774	GGUGCUGAGCGGGCCUUCGGGAGCUGGG
hsa_m5C_2446	chr1	227318032	227318033	-	ENST00000366766	C460	m5C	C9	5'-GGAGUGGGCUCGGGCGG-3'	.(((....)))...... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr1:227318025-227318041	CDC42BPA	HGNC:1737	ENSG00000143776	GGAGUGGGCUCGGGCGG
hsa_m5C_2447	chr1	227318030	227318031	-	ENST00000366766	C462	m5C	C11	5'-GGAGUGGGCUCGGGCGG-3'	.(((....)))...... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr1:227318025-227318041	CDC42BPA	HGNC:1737	ENSG00000143776	GGAGUGGGCUCGGGCGG
hsa_m5C_2448	chr1	227318026	227318027	-	ENST00000366766	C466	m5C	C15	5'-GGAGUGGGCUCGGGCGG-3'	.(((....)))...... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr1:227318025-227318041	CDC42BPA	HGNC:1737	ENSG00000143776	GGAGUGGGCUCGGGCGG
hsa_m5C_2449	chr6	169248626	169248627	-	ENST00000366787	C649	m5C	C14	5'-GGAUUGACGGCACCCGGCAUGUGG-3'	....((.(((...))).))..... ( -2.20)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr6:169248617-169248640	THBS2	HGNC:11786	ENSG00000186340	GGAUUGACGGCACCCGGCAUGUGG
hsa_m5C_2450	chr6	168308778	168308779	-	ENST00000366795	C1122	m5C	C7	5'-GGCUGGCCCGGCCAGG-3'	..(((((...))))). ( -6.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr6:168308770-168308785	DACT2	HGNC:21231	ENSG00000164488	GGCUGGCCCGGCCAGG
hsa_m5C_2451	chr6	168308776	168308777	-	ENST00000366795	C1124	m5C	C9	5'-GGCUGGCCCGGCCAGG-3'	..(((((...))))). ( -6.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr6:168308770-168308785	DACT2	HGNC:21231	ENSG00000164488	GGCUGGCCCGGCCAGG
hsa_m5C_2452	chr1	225845834	225845835	-	ENST00000366835	C3810	m5C	C7	5'-GGGGGGCCUGGGCUUAUCUGGG-3'	......(((((......))))) ( -3.50)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	22	chr1:225845820-225845841	TMEM63A	HGNC:29118	ENSG00000196187	GGGGGGCCUGGGCUUAUCUGGG
hsa_m5C_2453	chr1	220748669	220748670	+	ENST00000366913	C349	m5C	C3	5'-GGCGGCGCCGGCGG-3'	(((...)))..... ( -3.00)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	14	chr1:220748668-220748681	MTARC2	HGNC:26064	ENSG00000117791	GGCGGCGCCGGCGG
hsa_m5C_2454	chr1	220748672	220748673	+	ENST00000366913	C352	m5C	C6	5'-GGCGGCGCCGGCGG-3'	(((...)))..... ( -3.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	14	chr1:220748668-220748681	MTARC2	HGNC:26064	ENSG00000117791	GGCGGCGCCGGCGG
hsa_m5C_2455	chr1	220748674	220748675	+	ENST00000366913	C354	m5C	C8	5'-GGCGGCGCCGGCGG-3'	(((...)))..... ( -3.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	14	chr1:220748668-220748681	MTARC2	HGNC:26064	ENSG00000117791	GGCGGCGCCGGCGG
hsa_m5C_2456	chr1	220748675	220748676	+	ENST00000366913	C355	m5C	C9	5'-GGCGGCGCCGGCGG-3'	(((...)))..... ( -3.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	14	chr1:220748668-220748681	MTARC2	HGNC:26064	ENSG00000117791	GGCGGCGCCGGCGG
hsa_m5C_2457	chr1	220094184	220094185	+	ENST00000366922	C54	m5C	C11	5'-GGGGCGGGAGCGG-3'	...((....)).. ( -1.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	13	chr1:220094175-220094187	IARS2	HGNC:29685	ENSG00000067704	GGGGCGGGAGCGG
hsa_m5C_2458	chr1	220030430	220030431	-	ENST00000366923	C695	m5C	C5	5'-GGUGCGGAGAUGGGAAAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	19	chr1:220030417-220030435	EPRS1	HGNC:3418	ENSG00000136628	GGUGCGGAGAUGGGAAAGG
hsa_m5C_2459	chr1	219173894	219173895	+	ENST00000366928	C18	m5C	C3	5'-GGCGGCUGCGUCGGGG-3'	((((....)))).... ( -4.70)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	16	chr1:219173893-219173908	LYPLAL1	HGNC:20440	ENSG00000143353	GGCGGCUGCGUCGGGG
hsa_m5C_2460	chr1	214356801	214356802	-	ENST00000366956	C5258	m5C	C6	5'-GGGGUCCUGGCCAGG-3'	..(((....)))... ( -1.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr1:214356793-214356807	PTPN14	HGNC:9647	ENSG00000152104	GGGGUCCUGGCCAGG
hsa_m5C_2461	chr1	213051379	213051380	+	ENST00000366960	C140	m5C	C6	5'-GGUGGCGGCGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	11	chr1:213051375-213051385	RPS6KC1	HGNC:10439	ENSG00000136643	GGUGGCGGCGG
hsa_m5C_2462	chr6	158999843	158999844	-	ENST00000367069	C359	m5C	C6	5'-GGAAACCUGGGGACCGG-3'	......((((...)))) ( -1.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr6:158999833-158999849	RSPH3	HGNC:21054	ENSG00000130363	GGAAACCUGGGGACCGG
hsa_m5C_2463	chr6	158999842	158999843	-	ENST00000367069	C360	m5C	C7	5'-GGAAACCUGGGGACCGG-3'	......((((...)))) ( -1.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr6:158999833-158999849	RSPH3	HGNC:21054	ENSG00000130363	GGAAACCUGGGGACCGG
hsa_m5C_2464	chr6	158644722	158644723	-	ENST00000367089	C21	m5C	C16	5'-GGGAGCCGGAGGGGACGCGCCGG-3'	.....((((..........)))) ( -4.00)	bulge	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr6:158644716-158644738	DYNLT1	HGNC:11697	ENSG00000146425	GGGAGCCGGAGGGGACGCGCCGG
hsa_m5C_2465	chr6	158644720	158644721	-	ENST00000367089	C23	m5C	C18	5'-GGGAGCCGGAGGGGACGCGCCGG-3'	.....((((..........)))) ( -4.00)	bulge	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr6:158644716-158644738	DYNLT1	HGNC:11697	ENSG00000146425	GGGAGCCGGAGGGGACGCGCCGG
hsa_m5C_2466	chr1	206685166	206685167	+	ENST00000367103	C263	m5C	C22	5'-GGGGGGCGGCGGGGAGGGGGCCCGGAGCCGGAGGAGGGG-3'	....(((..((((.......))))..))).......... (-13.80)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	39	chr1:206685146-206685184	MAPKAPK2	HGNC:6887	ENSG00000162889	GGGGGGCGGCGGGGAGGGGGCCCGGAGCCGGAGGAGGGG
hsa_m5C_2467	chr1	206733543	206733544	+	ENST00000367103	C2354	m5C	C28	5'-GGGUUCCGGGAGGCAGAGAGGAGUGACCGG-3'	.....((((...((........))..)))) ( -6.20)	loop	mRNA	Muscle,Testis,HeLa;293T;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;38168991	30	chr1:206733517-206733546	MAPKAPK2	HGNC:6887	ENSG00000162889	GGGUUCCGGGAGGCAGAGAGGAGUGACCGG
hsa_m5C_2468	chr1	205750157	205750158	-	ENST00000367142	C25	m5C	C8	5'-GGGGGAGCGGGGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	13	chr1:205750153-205750165	NUCKS1	HGNC:29923	ENSG00000069275	GGGGGAGCGGGGG
hsa_m5C_2469	chr1	205750031	205750032	-	ENST00000367142	C151	m5C	C25	5'-GGGGGGGGUGGGGCGCCGAGCGCGCGGGGUGGGGGG-3'	............((.(((......))).))...... ( -6.60)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	36	chr1:205750021-205750056	NUCKS1	HGNC:29923	ENSG00000069275	GGGGGGGGUGGGGCGCCGAGCGCGCGGGGUGGGGGG
hsa_m5C_2470	chr1	205161329	205161330	-	ENST00000367162	C2043	m5C	C23	5'-GGAAGAUCUAUGGCUGAGGGUUCGG-3'	....(((((........)))))... ( -1.50)	loop	mRNA	MRC-5;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr1:205161328-205161352	DSTYK	HGNC:29043	ENSG00000133059	GGAAGAUCUAUGGCUGAGGGUUCGG
hsa_m5C_2471	chr1	205145646	205145647	-	ENST00000367162	C4868	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr1:205145638-205145652	DSTYK	HGNC:29043	ENSG00000133059	GGAGGCUGAGGCAGG
hsa_m5C_2472	chr1	205145640	205145641	-	ENST00000367162	C4874	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr1:205145638-205145652	DSTYK	HGNC:29043	ENSG00000133059	GGAGGCUGAGGCAGG
hsa_m5C_2473	chr1	204618569	204618570	-	ENST00000367175	C3636	m5C	C13	5'-GGCAGGAGGUACCGG-3'	....((.....)).. ( -0.10)	loop	mRNA	HCT116;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;38168991	28418038;38168991	15	chr1:204618568-204618582	LRRN2	HGNC:16914	ENSG00000170382	GGCAGGAGGUACCGG
hsa_m5C_2474	chr1	204552171	204552172	+	ENST00000367182	C4102	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr1:204552167-204552181	MDM4	HGNC:6974	ENSG00000198625	GGAGGCUGAGGCAGG
hsa_m5C_2475	chr1	204552177	204552178	+	ENST00000367182	C4108	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr1:204552167-204552181	MDM4	HGNC:6974	ENSG00000198625	GGAGGCUGAGGCAGG
hsa_m5C_2476	chr1	204555628	204555629	+	ENST00000367182	C7559	m5C	C7	5'-GGGAGGCCGAGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr1:204555623-204555637	MDM4	HGNC:6974	ENSG00000198625	GGGAGGCCGAGGUGG
hsa_m5C_2477	chr11	1752918	1752919	-	ENST00000367196	C2026	m5C	C19	5'-GGAGCCUGCAGGGUGGUGCUGG-3'	..(((((((...)))).))).. ( -4.60)	loop	mRNA	293T;HeLa	m5C-RIP-seq:(Medium),RNA-BisSeq:(High);UBS-seq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;30872485;38168991	22	chr11:1752916-1752937	CTSD	HGNC:2529	ENSG00000117984	GGAGCCUGCAGGGUGGUGCUGG
hsa_m5C_2478	chr1	204151754	204151755	-	ENST00000367202	C290	m5C	C19	5'-GGGGCAUGGAGGAGAAGGCGGCGG-3'	...((.((..........)))).. ( -0.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	24	chr1:204151750-204151773	ETNK2	HGNC:25575	ENSG00000143845	GGGGCAUGGAGGAGAAGGCGGCGG
hsa_m5C_2479	chr1	204151751	204151752	-	ENST00000367202	C293	m5C	C22	5'-GGGGCAUGGAGGAGAAGGCGGCGG-3'	...((.((..........)))).. ( -0.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	24	chr1:204151750-204151773	ETNK2	HGNC:25575	ENSG00000143845	GGGGCAUGGAGGAGAAGGCGGCGG
hsa_m5C_2480	chr6	153002681	153002682	-	ENST00000367233	C28	m5C	C13	5'-GGACUAAGGAUGCGGUCCCGGG-3'	(((((........))))).... ( -5.60)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr6:153002673-153002694	MTRF1L	HGNC:21051	ENSG00000112031	GGACUAAGGAUGCGGUCCCGGG
hsa_m5C_2481	chr1	203166493	203166494	+	ENST00000367236	C2496	m5C	C23	5'-GGACUCUGGACCCCAGGCCAUACCAGG-3'	((..(((((...)))))))........ ( -5.30)	loop	mRNA	T24;Testis,T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr1:203166472-203166498	ADORA1	HGNC:262	ENSG00000163485	GGACUCUGGACCCCAGGCCAUACCAGG
hsa_m5C_2482	chr1	202591979	202591980	-	ENST00000367268	C6251	m5C	C7	5'-GGUGUCCAGGGCUUCCGGUGGGGUCUCAGG-3'	.....((.(((((((....)))))))..)) ( -5.80)	loop	mRNA	frontal_cortex	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	NA	30	chr1:202591957-202591986	SYT2	HGNC:11510	ENSG00000143858	GGUGUCCAGGGCUUCCGGUGGGGUCUCAGG
hsa_m5C_2483	chr1	198157247	198157248	+	ENST00000367385	C251	m5C	C14	5'-GGUCUCUCGCGGGCGGGAGAACGG-3'	..(((((((....))))))).... ( -8.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	24	chr1:198157235-198157258	NEK7	HGNC:13386	ENSG00000151414	GGUCUCUCGCGGGCGGGAGAACGG
hsa_m5C_2484	chr6	148487631	148487632	+	ENST00000367467	C876	m5C	C21	5'-GG^CUCAAGGAAUACGAGGCCCAGCACCGG-3'	(((((.........)).)))......... ( -3.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr6:148474221-148474222;148487614-148487640	SASH1	HGNC:19182	ENSG00000111961	GGCUCAAGGAAUACGAGGCCCAGCACCGG
hsa_m5C_2485	chr1	186374904	186374905	-	ENST00000367478	C349	m5C	C13	5'-GGCCUGAAGGGGCGG-3'	.((((....)))).. ( -5.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	15	chr1:186374903-186374917	TPR	HGNC:12017	ENSG00000047410	GGCCUGAAGGGGCGG
hsa_m5C_2486	chr6	139166946	139166947	+	ENST00000367658	C1252	m5C	C9	5'-GGCCAUGGCUGGGG-3'	..(((....))).. ( -1.50)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr6:139166939-139166952	HECA	HGNC:21041	ENSG00000112406	GGCCAUGGCUGGGG
hsa_m5C_2487	chr6	139166325	139166326	+	ENST00000367658	C631	m5C	C8	5'-GGUAGGCCGGUGG-3'	((....))..... ( -0.50)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	13	chr6:139166319-139166331	HECA	HGNC:21041	ENSG00000112406	GGUAGGCCGGUGG
hsa_m5C_2488	chr1	161959434	161959435	+	ENST00000367942	C2835	m5C	C7	5'-GGGAGGCCGAGGCGGG-3'	......(((...))). ( -1.70)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr1:161959429-161959444	ATF6	HGNC:791	ENSG00000118217	GGGAGGCCGAGGCGGG
hsa_m5C_2489	chr1	161959435	161959436	+	ENST00000367942	C2836	m5C	C8	5'-GGGAGGCCGAGGCGGG-3'	......(((...))). ( -1.70)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr1:161959429-161959444	ATF6	HGNC:791	ENSG00000118217	GGGAGGCCGAGGCGGG
hsa_m5C_2490	chr1	161959440	161959441	+	ENST00000367942	C2841	m5C	C13	5'-GGGAGGCCGAGGCGGG-3'	......(((...))). ( -1.70)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr1:161959429-161959444	ATF6	HGNC:791	ENSG00000118217	GGGAGGCCGAGGCGGG
hsa_m5C_2491	chr1	161749796	161749797	+	ENST00000367943	C12	m5C	C6	5'-GGGCGCGGCCAUGUUGGAGGCUCCGG-3'	.((.((..(((...)))..)).)).. ( -8.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr1:161749792-161749817	DUSP12	HGNC:3067	ENSG00000081721	GGGCGCGGCCAUGUUGGAGGCUCCGG
hsa_m5C_2492	chr1	161124446	161124447	-	ENST00000368006	C230	m5C	C14	5'-GGCGGGCCUAAAGCGGCGGG-3'	.....(((......)))... ( -4.30)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	20	chr1:161124441-161124460	DEDD	HGNC:2755	ENSG00000158796	GGCGGGCCUAAAGCGGCGGG
hsa_m5C_2493	chr1	159919302	159919303	-	ENST00000368096	C739	m5C	C34	5'-GGGUGGGCUGGCAGUAGCCCGAGAUGAUGGGCUCUUCUCUGGG-3'	....((((((....))))))((((.((.....)).)))).... (-14.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	43	chr1:159919294-159919336	TAGLN2	HGNC:11554	ENSG00000158710	GGGUGGGCUGGCAGUAGCCCGAGAUGAUGGGCUCUUCUCUGGG
hsa_m5C_2494	chr1	156669604	156669605	-	ENST00000368223	C4726	m5C	C19	5'-GGAUGGAGGAUGCAGGCCCAGGG-3'	.......((........)).... ( -0.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr1:156669601-156669623	NES	HGNC:7756	ENSG00000132688	GGAUGGAGGAUGCAGGCCCAGGG
hsa_m5C_2495	chr1	156243126	156243127	+	ENST00000368272	C316	m5C	C7	5'-GGCUUUCAGGAGGCCUAUCGG-3'	((((((...))))))...... ( -6.00)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	21	chr1:156243121-156243141	BGLAP	HGNC:1043	ENSG00000242252	GGCUUUCAGGAGGCCUAUCGG
hsa_m5C_2496	chr1	156050535	156050536	-	ENST00000368309	C593	m5C	C9	5'-GGGGCAUCCUGGGGCUGGGCAGCCUAGGCCUGGG-3'	.......((((((.(((((...))))).)))))) (-16.00)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	34	chr1:156050511-156050544	UBQLN4	HGNC:1237	ENSG00000160803	GGGGCAUCCUGGGGCUGGGCAGCCUAGGCCUGGG
hsa_m5C_2497	chr1	155738876	155738877	+	ENST00000368336	C1923	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr1:155738866-155738880	DAP3	HGNC:2673	ENSG00000132676	GGAGGCUGAGGCAGG
hsa_m5C_2498	chr1	155285865	155285866	+	ENST00000368358	C1507	m5C	C24	5'-GGAUCUCGUGGUGCGUGAGGGCUCCGUGG-3'	......(((((.((......)).))))). ( -6.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr1:155285843-155285871	HCN3	HGNC:19183	ENSG00000143630	GGAUCUCGUGGUGCGUGAGGGCUCCGUGG
hsa_m5C_2499	chr1	155138588	155138589	+	ENST00000368404	C1034	m5C	C7	5'-GGGAGGCCAAGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr1:155138583-155138597	SLC50A1	HGNC:30657	ENSG00000169241	GGGAGGCCAAGGUGG
hsa_m5C_2500	chr6	122789335	122789336	+	ENST00000368440	C79	m5C	C10	5'-GGUCAGCCCCGCGGCCCUCCAUGGCGCUGG-3'	...((((.(((.((....)).))).)))). (-11.00)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr6:122789327-122789356	SMPDL3A	HGNC:17389	ENSG00000172594	GGUCAGCCCCGCGGCCCUCCAUGGCGCUGG
hsa_m5C_2501	chr6	119349744	119349745	-	ENST00000368468	C17	m5C	C8	5'-GGGGCCGCGGCGG-3'	...((....)).. ( -1.40)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	13	chr6:119349740-119349752	MAN1A1	HGNC:6821	ENSG00000111885	GGGGCCGCGGCGG
hsa_m5C_2502	chr1	154467664	154467665	+	ENST00000368485	C3979	m5C	C7	5'-GGGAGGCCAAGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr1:154467659-154467673	IL6R	HGNC:6019	ENSG00000160712	GGGAGGCCAAGGUGG
hsa_m5C_2503	chr6	117694059	117694060	+	ENST00000368494	C773	m5C	C14	5'-GGCAGUGAAGGUGCUGUCUCCGGAAGAUGG-3'	((((((......)))))).(((.....))) ( -6.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr6:117694047-117694076	NUS1	HGNC:21042	ENSG00000153989	GGCAGUGAAGGUGCUGUCUCCGGAAGAUGG
hsa_m5C_2504	chr10	132537887	132537888	+	ENST00000368594	C102	m5C	C24	5'-GGCGCGGCGGCGAGCGACGGGCGCGGG-3'	.((((..((........)).))))... ( -9.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr10:132537865-132537891	INPP5A	HGNC:6076	ENSG00000068383	GGCGCGGCGGCGAGCGACGGGCGCGGG
hsa_m5C_2505	chr6	116279216	116279217	-	ENST00000368608	C714	m5C	C3	5'-GGCGGAGGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	30526041	11	chr6:116279209-116279219	TSPYL1	HGNC:12382	ENSG00000189241	GGCGGAGGAGG
hsa_m5C_2506	chr1	153948549	153948550	-	ENST00000368633	C1884	m5C	C29	5'-GGGCCUGGAUUUUUAGGGGGUGAGGGGCCAAUGGG-3'	((.(((..(((((...)))))..))).))...... ( -8.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4hunter score>=1.2:(Medium)	RMVar database	28418038	35	chr1:153948544-153948578	CRTC2	HGNC:27301	ENSG00000160741	GGGCCUGGAUUUUUAGGGGGUGAGGGGCCAAUGGG
hsa_m5C_2507	chr10	128098702	128098703	-	ENST00000368654	C10672	m5C	C10	5'-GGCCGGGGGCAUUUGG-3'	.(((...)))...... ( -2.70)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr10:128098697-128098712	MKI67	HGNC:7107	ENSG00000148773	GGCCGGGGGCAUUUGG
hsa_m5C_2508	chr1	153679117	153679118	+	ENST00000368680	C431	m5C	C14	5'-GGCCAUGCCGGGGCCCCGG-3'	((((.......)))).... ( -6.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr1:153679105-153679123	NPR1	HGNC:7943	ENSG00000169418	GGCCAUGCCGGGGCCCCGG
hsa_m5C_2509	chr6	111605858	111605859	-	ENST00000368761	C20	m5C	C4	5'-GGGCCCGGAGAAGGUGGAGG-3'	....(((.......)))... ( -1.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr6:111605843-111605862	TRAF3IP2	HGNC:1343	ENSG00000056972	GGGCCCGGAGAAGGUGGAGG
hsa_m5C_2510	chr6	111605857	111605858	-	ENST00000368761	C21	m5C	C5	5'-GGGCCCGGAGAAGGUGGAGG-3'	....(((.......)))... ( -1.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr6:111605843-111605862	TRAF3IP2	HGNC:1343	ENSG00000056972	GGGCCCGGAGAAGGUGGAGG
hsa_m5C_2511	chr6	111605856	111605857	-	ENST00000368761	C22	m5C	C6	5'-GGGCCCGGAGAAGGUGGAGG-3'	....(((.......)))... ( -1.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr6:111605843-111605862	TRAF3IP2	HGNC:1343	ENSG00000056972	GGGCCCGGAGAAGGUGGAGG
hsa_m5C_2512	chr1	151986113	151986114	-	ENST00000368811	C246	m5C	C13	5'-GGAAAAGGAGUUCCCUGGAUUUUUGG-3'	.....((((((((...)))))))).. ( -2.40)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	26	chr1:151986101-151986126	S100A10	HGNC:10487	ENSG00000197747	GGAAAAGGAGUUCCCUGGAUUUUUGG
hsa_m5C_2513	chr10	124461977	124461978	+	ENST00000368842	C156	m5C	C9	5'-GGUGGAGGCGG-3'	NA	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr10:124461970-124461980	LHPP	HGNC:30042	ENSG00000107902	GGUGGAGGCGG
hsa_m5C_2514	chr1	151292805	151292806	-	ENST00000368875	C3114	m5C	C22	5'-GGGGGGUCCAGGGCACCCUCCCUAGAGGG-3'	(((((((.......)))))))........ (-10.60)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr1:151292799-151292827	PI4KB	HGNC:8984	ENSG00000143393	GGGGGGUCCAGGGCACCCUCCCUAGAGGG
hsa_m5C_2515	chr1	151120408	151120409	+	ENST00000368918	C3674	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr1:151120404-151120418	GABPB2	HGNC:28441	ENSG00000143458	GGAGGCUGAGGCAGG
hsa_m5C_2516	chr1	151120414	151120415	+	ENST00000368918	C3680	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr1:151120404-151120418	GABPB2	HGNC:28441	ENSG00000143458	GGAGGCUGAGGCAGG
hsa_m5C_2517	chr1	151047898	151047899	+	ENST00000368926	C149	m5C	C5	5'-GGGUCCCCGGGCGGCGGGG-3'	....(((((.....))))) ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	19	chr1:151047895-151047913	C1orf56	HGNC:26045	ENSG00000143443	GGGUCCCCGGGCGGCGGGG
hsa_m5C_2518	chr1	151047899	151047900	+	ENST00000368926	C150	m5C	C6	5'-GGGUCCCCGGGCGGCGGGG-3'	....(((((.....))))) ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	19	chr1:151047895-151047913	C1orf56	HGNC:26045	ENSG00000143443	GGGUCCCCGGGCGGCGGGG
hsa_m5C_2519	chr1	151047900	151047901	+	ENST00000368926	C151	m5C	C7	5'-GGGUCCCCGGGCGGCGGGG-3'	....(((((.....))))) ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	19	chr1:151047895-151047913	C1orf56	HGNC:26045	ENSG00000143443	GGGUCCCCGGGCGGCGGGG
hsa_m5C_2520	chr1	151047901	151047902	+	ENST00000368926	C152	m5C	C8	5'-GGGUCCCCGGGCGGCGGGG-3'	....(((((.....))))) ( -8.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	19	chr1:151047895-151047913	C1orf56	HGNC:26045	ENSG00000143443	GGGUCCCCGGGCGGCGGGG
hsa_m5C_2521	chr1	151047905	151047906	+	ENST00000368926	C156	m5C	C12	5'-GGGUCCCCGGGCGGCGGGG-3'	....(((((.....))))) ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr1:151047895-151047913	C1orf56	HGNC:26045	ENSG00000143443	GGGUCCCCGGGCGGCGGGG
hsa_m5C_2522	chr10	122461735	122461736	+	ENST00000368984	C184	m5C	C3	5'-GGCCGCUCGGCGCCUUUGGCCGCCGGG-3'	.....(((((((((...)).))))))) (-12.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr10:122461734-122461760	HTRA1	HGNC:9476	ENSG00000166033	GGCCGCUCGGCGCCUUUGGCCGCCGGG
hsa_m5C_2523	chr10	122461816	122461817	+	ENST00000368984	C265	m5C	C4	5'-GGGCGGCCGGGCCCGG-3'	((((......)))).. ( -8.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr10:122461814-122461829	HTRA1	HGNC:9476	ENSG00000166033	GGGCGGCCGGGCCCGG
hsa_m5C_2524	chr10	122461819	122461820	+	ENST00000368984	C268	m5C	C7	5'-GGGCGGCCGGGCCCGG-3'	((((......)))).. ( -8.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr10:122461814-122461829	HTRA1	HGNC:9476	ENSG00000166033	GGGCGGCCGGGCCCGG
hsa_m5C_2525	chr10	122461824	122461825	+	ENST00000368984	C273	m5C	C12	5'-GGGCGGCCGGGCCCGG-3'	((((......)))).. ( -8.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr10:122461814-122461829	HTRA1	HGNC:9476	ENSG00000166033	GGGCGGCCGGGCCCGG
hsa_m5C_2526	chr10	122083220	122083221	+	ENST00000369005	C1092	m5C	C3	5'-GGCAGGGGGUGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	12	chr10:122083219-122083230	TACC2	HGNC:11523	ENSG00000138162	GGCAGGGGGUGG
hsa_m5C_2527	chr1	150578965	150578966	-	ENST00000369026	C645	m5C	C5	5'-GGAGCAGGCCACCGGCGCCAAGG-3'	((.((.((...)).)).)).... ( -5.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr1:150578948-150578970	MCL1	HGNC:6943	ENSG00000143384	GGAGCAGGCCACCGGCGCCAAGG
hsa_m5C_2528	chr1	150579371	150579372	-	ENST00000369026	C239	m5C	C12	5'-GGAGGGGAGGCCGG-3'	....((....)).. ( -1.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMVar database	28418038	14	chr1:150579370-150579383	MCL1	HGNC:6943	ENSG00000143384	GGAGGGGAGGCCGG
hsa_m5C_2529	chr1	150553874	150553875	+	ENST00000369039	C1173	m5C	C24	5'-GGGUUGGGCCAGUCCCCAGGUAGCAGGG-3'	...(((((......)))))......... ( -4.90)	loop	mRNA	HeLa	BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	31061524	28	chr1:150553852-150553879	ADAMTSL4	HGNC:19706	ENSG00000143382	GGGUUGGGCCAGUCCCCAGGUAGCAGGG
hsa_m5C_2530	chr6	106666077	106666078	+	ENST00000369046	C1767	m5C	C6	5'-GGAGGCCAAGGCGAGCGG-3'	....((....))...... ( -1.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr6:106666073-106666090	QRSL1	HGNC:21020	ENSG00000130348	GGAGGCCAAGGCGAGCGG
hsa_m5C_2531	chr1	150507473	150507474	+	ENST00000369064	C2599	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr1:150507463-150507477	TARS2	HGNC:30740	ENSG00000143374	GGAGGCUGAGGCAGG
hsa_m5C_2532	chr1	150507339	150507340	+	ENST00000369064	C2465	m5C	C12	5'-GGAGGCUGAGGCGG-3'	....((....)).. ( -0.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	14	chr1:150507329-150507342	TARS2	HGNC:30740	ENSG00000143374	GGAGGCUGAGGCGG
hsa_m5C_2533	chr1	150364725	150364726	+	ENST00000369068	C580	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr1:150364724-150364734	RPRD2	HGNC:29039	ENSG00000163125	GGCGGCGGCGG
hsa_m5C_2534	chr1	150364728	150364729	+	ENST00000369068	C583	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr1:150364724-150364734	RPRD2	HGNC:29039	ENSG00000163125	GGCGGCGGCGG
hsa_m5C_2535	chr1	150364731	150364732	+	ENST00000369068	C586	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	11	chr1:150364724-150364734	RPRD2	HGNC:29039	ENSG00000163125	GGCGGCGGCGG
hsa_m5C_2536	chr10	119838546	119838547	-	ENST00000369077	C1655	m5C	C14	5'-GGAACAGGGGCAGCUGG-3'	....(((......))). ( -2.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr10:119838544-119838560	MCMBP	HGNC:25782	ENSG00000197771	GGAACAGGGGCAGCUGG
hsa_m5C_2537	chr6	106107233	106107234	+	ENST00000369096	C2444	m5C	C5	5'-GGCUCGAGGACGUGGAGG-3'	..(((.........))). ( -1.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr6:106107230-106107247	PRDM1	HGNC:9346	ENSG00000057657	GGCUCGAGGACGUGGAGG
hsa_m5C_2538	chr10	119042761	119042762	-	ENST00000369144	C2899	m5C	C11	5'-GGAGUGGAGACGUGGAGAAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	21	chr10:119042752-119042772	EIF3A	HGNC:3271	ENSG00000107581	GGAGUGGAGACGUGGAGAAGG
hsa_m5C_2539	chr10	114045588	114045589	+	ENST00000369295	C1724	m5C	C24	5'-GGGCCCGGCGCGGGGCGCGGACUCCGGGCACGGCUUCCCAGGG-3'	(((.(((((.(((((......))))).)).)))...))).... (-21.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	43	chr10:114045566-114045608	ADRB1	HGNC:285	ENSG00000043591	GGGCCCGGCGCGGGGCGCGGACUCCGGGCACGGCUUCCCAGGG
hsa_m5C_2540	chr10	114045589	114045590	+	ENST00000369295	C1725	m5C	C25	5'-GGGCCCGGCGCGGGGCGCGGACUCCGGGCACGGCUUCCCAGGG-3'	(((.(((((.(((((......))))).)).)))...))).... (-21.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	43	chr10:114045566-114045608	ADRB1	HGNC:285	ENSG00000043591	GGGCCCGGCGCGGGGCGCGGACUCCGGGCACGGCUUCCCAGGG
hsa_m5C_2541	chr6	89690707	89690708	-	ENST00000369393	C10901	m5C	C14	5'-GGAGGAGGAAGAACGG-3'	NA	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr6:89690706-89690721	MDN1	HGNC:18302	ENSG00000112159	GGAGGAGGAAGAACGG
hsa_m5C_2542	chr6	87472994	87472995	+	ENST00000369552	C22	m5C	C11	5'-GGGGGGCUGUCGGGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr6:87472985-87472999	SLC35A1	HGNC:11021	ENSG00000164414	GGGGGGCUGUCGGGG
hsa_m5C_2543	chr1	113895906	113895907	-	ENST00000369569	C1724	m5C	C16	5'-GGACUUUUGGAGGAUCCGG-3'	((((((....))).))).. ( -3.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr1:113895904-113895922	AP4B1	HGNC:572	ENSG00000134262	GGACUUUUGGAGGAUCCGG
hsa_m5C_2544	chr6	83859769	83859770	+	ENST00000369681	C82	m5C	C16	5'-GGGCAGGGCCCGGGGCCGGG-3'	((((...))))......... ( -6.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	22344696	20	chr6:83859755-83859774	CYB5R4	HGNC:20147	ENSG00000065615	GGGCAGGGCCCGGGGCCGGG
hsa_m5C_2545	chr6	83859770	83859771	+	ENST00000369681	C83	m5C	C17	5'-GGGCAGGGCCCGGGGCCGGG-3'	((((...))))......... ( -6.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	20	chr6:83859755-83859774	CYB5R4	HGNC:20147	ENSG00000065615	GGGCAGGGCCCGGGGCCGGG
hsa_m5C_2546	chr6	83065740	83065741	-	ENST00000369747	C101	m5C	C5	5'-GGUCCGGUCUGGGACUGG-3'	(((((......))))).. ( -7.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr6:83065728-83065745	UBE3D	HGNC:21381	ENSG00000118420	GGUCCGGUCUGGGACUGG
hsa_m5C_2547	chr6	83065736	83065737	-	ENST00000369747	C105	m5C	C9	5'-GGUCCGGUCUGGGACUGG-3'	(((((......))))).. ( -7.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr6:83065728-83065745	UBE3D	HGNC:21381	ENSG00000118420	GGUCCGGUCUGGGACUGG
hsa_m5C_2548	chr10	103967617	103967618	+	ENST00000369755	C479	m5C	C19	5'-GGGACCGCCCGGCCGGAGCUGCGGG-3'	....((((..(((....))))))). ( -8.30)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr10:103967600-103967624	SLK	HGNC:11088	ENSG00000065613	GGGACCGCCCGGCCGGAGCUGCGGG
hsa_m5C_2549	chr10	103350829	103350830	-	ENST00000369847	C311	m5C	C4	5'-GGACGAGGACGAGGAGUUGG-3'	.......(((.....))).. ( -0.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr10:103350814-103350833	PCGF6	HGNC:21156	ENSG00000156374	GGACGAGGACGAGGAGUUGG
hsa_m5C_2550	chr10	103350823	103350824	-	ENST00000369847	C317	m5C	C10	5'-GGACGAGGACGAGGAGUUGG-3'	.......(((.....))).. ( -0.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr10:103350814-103350833	PCGF6	HGNC:21156	ENSG00000156374	GGACGAGGACGAGGAGUUGG
hsa_m5C_2551	chr10	103350896	103350897	-	ENST00000369847	C244	m5C	C15	5'-GGCUCCCGGCUGCUCCGGCUCCCGG-3'	.....((((..((....))..)))) ( -9.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr10:103350887-103350911	PCGF6	HGNC:21156	ENSG00000156374	GGCUCCCGGCUGCUCCGGCUCCCGG
hsa_m5C_2552	chr10	103350895	103350896	-	ENST00000369847	C245	m5C	C16	5'-GGCUCCCGGCUGCUCCGGCUCCCGG-3'	.....((((..((....))..)))) ( -9.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr10:103350887-103350911	PCGF6	HGNC:21156	ENSG00000156374	GGCUCCCGGCUGCUCCGGCUCCCGG
hsa_m5C_2553	chr10	103350892	103350893	-	ENST00000369847	C248	m5C	C19	5'-GGCUCCCGGCUGCUCCGGCUCCCGG-3'	.....((((..((....))..)))) ( -9.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr10:103350887-103350911	PCGF6	HGNC:21156	ENSG00000156374	GGCUCCCGGCUGCUCCGGCUCCCGG
hsa_m5C_2554	chr10	103277305	103277306	+	ENST00000369849	C169	m5C	C5	5'-GGGGCCGGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	11	chr10:103277302-103277312	INA	HGNC:6057	ENSG00000148798	GGGGCCGGCGG
hsa_m5C_2555	chrX	154366781	154366782	-	ENST00000369850	C1182	m5C	C4	5'-GGCCAGGGAGAGGUGCUGG-3'	..((((.........)))) ( -3.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	19	chrX:154366767-154366785	FLNA	HGNC:3754	ENSG00000196924	GGCCAGGGAGAGGUGCUGG
hsa_m5C_2556	chrX	154364638	154364639	-	ENST00000369850	C2154	m5C	C3	5'-GGCCGCAGGAGGCUGG-3'	((((......)))).. ( -5.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	16	chrX:154364626-154364641	FLNA	HGNC:3754	ENSG00000196924	GGCCGCAGGAGGCUGG
hsa_m5C_2557	chrX	154364637	154364638	-	ENST00000369850	C2155	m5C	C4	5'-GGCCGCAGGAGGCUGG-3'	((((......)))).. ( -5.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	16	chrX:154364626-154364641	FLNA	HGNC:3754	ENSG00000196924	GGCCGCAGGAGGCUGG
hsa_m5C_2558	chrX	154364628	154364629	-	ENST00000369850	C2164	m5C	C13	5'-GGCCGCAGGAGGCUGG-3'	((((......)))).. ( -5.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	16	chrX:154364626-154364641	FLNA	HGNC:3754	ENSG00000196924	GGCCGCAGGAGGCUGG
hsa_m5C_2559	chrX	154354944	154354945	-	ENST00000369850	C5342	m5C	C13	5'-GGUGGAUGUGGACGUGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	17	chrX:154354941-154354957	FLNA	HGNC:3754	ENSG00000196924	GGUGGAUGUGGACGUGG
hsa_m5C_2560	chr10	103078364	103078365	+	ENST00000369878	C4000	m5C	C17	5'-GGCCCAUGGGGCCCGGCAGUGG-3'	(((((...)))))......... ( -8.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr10:103078349-103078370	CNNM2	HGNC:103	ENSG00000148842	GGCCCAUGGGGCCCGGCAGUGG
hsa_m5C_2561	chr10	102918599	102918600	+	ENST00000369878	C307	m5C	C12	5'-GGCCGGGGGAUCCUGCAGGCGGCUGCGGG-3'	...........(((((((....))))))) (-11.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	29	chr10:102918589-102918617	CNNM2	HGNC:103	ENSG00000148842	GGCCGGGGGAUCCUGCAGGCGGCUGCGGG
hsa_m5C_2562	chr20	63969849	63969850	-	ENST00000369888	C81	m5C	C5	5'-GGCCCGGCCCGGCCCGG-3'	((((......))))... ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr20:63969838-63969854	ZNF512B	HGNC:29212	ENSG00000196700	GGCCCGGCCCGGCCCGG
hsa_m5C_2563	chr20	63969846	63969847	-	ENST00000369888	C84	m5C	C8	5'-GGCCCGGCCCGGCCCGG-3'	((((......))))... ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr20:63969838-63969854	ZNF512B	HGNC:29212	ENSG00000196700	GGCCCGGCCCGGCCCGG
hsa_m5C_2564	chr20	63969844	63969845	-	ENST00000369888	C86	m5C	C10	5'-GGCCCGGCCCGGCCCGG-3'	((((......))))... ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr20:63969838-63969854	ZNF512B	HGNC:29212	ENSG00000196700	GGCCCGGCCCGGCCCGG
hsa_m5C_2565	chr20	63969839	63969840	-	ENST00000369888	C91	m5C	C15	5'-GGCCCGGCCCGGCCCGG-3'	((((......))))... ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr20:63969838-63969854	ZNF512B	HGNC:29212	ENSG00000196700	GGCCCGGCCCGGCCCGG
hsa_m5C_2566	chr20	63958977	63958978	-	ENST00000369888	C3708	m5C	C16	5'-GGGGUCUUGCUGGGGCCCAUAGGCAUGUGGGGCAGGAAGCUGG-3'	..((.(((.(((...((((((....)))))).))).))))).. (-15.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	43	chr20:63958951-63958993	ZNF512B	HGNC:29212	ENSG00000196700	GGGGUCUUGCUGGGGCCCAUAGGCAUGUGGGGCAGGAAGCUGG
hsa_m5C_2567	chrX	154019883	154019884	-	ENST00000369980	C19	m5C	C5	5'-GGACCCGGCCGGCCCAGG-3'	((.((.....)).))... ( -3.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chrX:154019871-154019888	IRAK1	HGNC:6112	ENSG00000184216	GGACCCGGCCGGCCCAGG
hsa_m5C_2568	chrX	154010742	154010743	-	ENST00000369980	C3345	m5C	C6	5'-GGGAGCAUGGCAGACAGGGAAGGG-3'	NA	bulge	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	24	chrX:154010725-154010748	IRAK1	HGNC:6112	ENSG00000184216	GGGAGCAUGGCAGACAGGGAAGGG
hsa_m5C_2569	chrX	154010737	154010738	-	ENST00000369980	C3350	m5C	C11	5'-GGGAGCAUGGCAGACAGGGAAGGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	24	chrX:154010725-154010748	IRAK1	HGNC:6112	ENSG00000184216	GGGAGCAUGGCAGACAGGGAAGGG
hsa_m5C_2570	chrX	154014130	154014131	-	ENST00000369980	C1540	m5C	C4	5'-GGGCCCUGCCCACCUGAGCUGGGCCUGGGCCUGGG-3'	((((((.(((((.......)))))..))))))... (-20.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	35	chrX:154014100-154014134	IRAK1	HGNC:6112	ENSG00000184216	GGGCCCUGCCCACCUGAGCUGGGCCUGGGCCUGGG
hsa_m5C_2571	chrX	154014129	154014130	-	ENST00000369980	C1541	m5C	C5	5'-GGGCCCUGCCCACCUGAGCUGGGCCUGGGCCUGGG-3'	((((((.(((((.......)))))..))))))... (-20.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	35	chrX:154014100-154014134	IRAK1	HGNC:6112	ENSG00000184216	GGGCCCUGCCCACCUGAGCUGGGCCUGGGCCUGGG
hsa_m5C_2572	chrX	154014128	154014129	-	ENST00000369980	C1542	m5C	C6	5'-GGGCCCUGCCCACCUGAGCUGGGCCUGGGCCUGGG-3'	((((((.(((((.......)))))..))))))... (-20.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	35	chrX:154014100-154014134	IRAK1	HGNC:6112	ENSG00000184216	GGGCCCUGCCCACCUGAGCUGGGCCUGGGCCUGGG
hsa_m5C_2573	chrX	154014110	154014111	-	ENST00000369980	C1560	m5C	C24	5'-GGGCCCUGCCCACCUGAGCUGGGCCUGGGCCUGGG-3'	((((((.(((((.......)))))..))))))... (-20.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	35	chrX:154014100-154014134	IRAK1	HGNC:6112	ENSG00000184216	GGGCCCUGCCCACCUGAGCUGGGCCUGGGCCUGGG
hsa_m5C_2574	chrX	154014109	154014110	-	ENST00000369980	C1561	m5C	C25	5'-GGGCCCUGCCCACCUGAGCUGGGCCUGGGCCUGGG-3'	((((((.(((((.......)))))..))))))... (-20.40)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	35	chrX:154014100-154014134	IRAK1	HGNC:6112	ENSG00000184216	GGGCCCUGCCCACCUGAGCUGGGCCUGGGCCUGGG
hsa_m5C_2575	chrX	154014104	154014105	-	ENST00000369980	C1566	m5C	C30	5'-GGGCCCUGCCCACCUGAGCUGGGCCUGGGCCUGGG-3'	((((((.(((((.......)))))..))))))... (-20.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	35	chrX:154014100-154014134	IRAK1	HGNC:6112	ENSG00000184216	GGGCCCUGCCCACCUGAGCUGGGCCUGGGCCUGGG
hsa_m5C_2576	chrX	154014103	154014104	-	ENST00000369980	C1567	m5C	C31	5'-GGGCCCUGCCCACCUGAGCUGGGCCUGGGCCUGGG-3'	((((((.(((((.......)))))..))))))... (-20.40)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	35	chrX:154014100-154014134	IRAK1	HGNC:6112	ENSG00000184216	GGGCCCUGCCCACCUGAGCUGGGCCUGGGCCUGGG
hsa_m5C_2577	chrX	154019794	154019795	-	ENST00000369980	C108	m5C	C12	5'-GGGGGGCCGGGCCCGGG-3'	...((((...))))... ( -6.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	17	chrX:154019790-154019806	IRAK1	HGNC:6112	ENSG00000184216	GGGGGGCCGGGCCCGGG
hsa_m5C_2578	chrX	154019793	154019794	-	ENST00000369980	C109	m5C	C13	5'-GGGGGGCCGGGCCCGGG-3'	...((((...))))... ( -6.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	17	chrX:154019790-154019806	IRAK1	HGNC:6112	ENSG00000184216	GGGGGGCCGGGCCCGGG
hsa_m5C_2579	chrX	154019792	154019793	-	ENST00000369980	C110	m5C	C14	5'-GGGGGGCCGGGCCCGGG-3'	...((((...))))... ( -6.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	17	chrX:154019790-154019806	IRAK1	HGNC:6112	ENSG00000184216	GGGGGGCCGGGCCCGGG
hsa_m5C_2580	chrX	153921636	153921637	-	ENST00000370028	C298	m5C	C9	5'-GGAGGCCGCCUGGGG-3'	.....((.....)). ( -1.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	15	chrX:153921631-153921645	ARHGAP4	HGNC:674	ENSG00000089820	GGAGGCCGCCUGGGG
hsa_m5C_2581	chr10	102056148	102056149	-	ENST00000370033	C25	m5C	C17	5'-GGAGCAGCGGCAGCGUCGGUGG-3'	....((.((((...)))).)). ( -5.90)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr10:102056144-102056165	ARMH3	HGNC:25788	ENSG00000120029	GGAGCAGCGGCAGCGUCGGUGG
hsa_m5C_2582	chr1	108560267	108560268	+	ENST00000370035	C169	m5C	C6	5'-GGCGGCGGCAGCGG-3'	....((....)).. ( -1.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr1:108560263-108560276	EEIG2	HGNC:27637	ENSG00000162636	GGCGGCGGCAGCGG
hsa_m5C_2583	chr1	107057616	107057617	+	ENST00000370078	C944	m5C	C11	5'-GGAGGGGAGUCGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	13	chr1:107057607-107057619	PRMT6	HGNC:18241	ENSG00000198890	GGAGGGGAGUCGG
hsa_m5C_2584	chr1	107057029	107057030	+	ENST00000370078	C357	m5C	C10	5'-GGCCGGGGCCCGG-3'	..((((...)))) ( -3.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	13	chr1:107057021-107057033	PRMT6	HGNC:18241	ENSG00000198890	GGCCGGGGCCCGG
hsa_m5C_2585	chr1	107057257	107057258	+	ENST00000370078	C585	m5C	C14	5'-GGCUGAAGGAGGGCGG-3'	.(((.......))).. ( -2.20)	loop	mRNA	SNB19;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database;RMVar database	28418038	16	chr1:107057245-107057260	PRMT6	HGNC:18241	ENSG00000198890	GGCUGAAGGAGGGCGG
hsa_m5C_2586	chrX	153785948	153785949	-	ENST00000370092	C1529	m5C	C14	5'-GGACAUCGGGGGCCAGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	17	chrX:153785946-153785962	IDH3G	HGNC:5386	ENSG00000067829	GGACAUCGGGGGCCAGG
hsa_m5C_2587	chr10	101783331	101783332	-	ENST00000370110	C115	m5C	C4	5'-GGGCCGGGGGUGUCGGGGGCCUACGGG-3'	...(((.((((.......)))).))). ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	27	chr10:101783309-101783335	NPM3	HGNC:7931	ENSG00000107833	GGGCCGGGGGUGUCGGGGGCCUACGGG
hsa_m5C_2588	chr10	101783330	101783331	-	ENST00000370110	C116	m5C	C5	5'-GGGCCGGGGGUGUCGGGGGCCUACGGG-3'	...(((.((((.......)))).))). ( -8.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	30872485	27	chr10:101783309-101783335	NPM3	HGNC:7931	ENSG00000107833	GGGCCGGGGGUGUCGGGGGCCUACGGG
hsa_m5C_2589	chr1	100194455	100194456	-	ENST00000370132	C3262	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr1:100194447-100194461	DBT	HGNC:2698	ENSG00000137992	GGAGGCUGAGGCAGG
hsa_m5C_2590	chr1	100038103	100038104	+	ENST00000370152	C10	m5C	C10	5'-GGAGGCAGGCCGG-3'	((.......)).. ( -0.30)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;RMVar database	28418038	13	chr1:100038095-100038107	MFSD14A	HGNC:23363	ENSG00000156875	GGAGGCAGGCCGG
hsa_m5C_2591	chr1	93909241	93909242	-	ENST00000370238	C189	m5C	C24	5'-GGGUCUCUCUCGGGCCUCGGGCACCGCGUCCUGUGGG-3'	((((((.....))))))......((((.....)))). (-10.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	37	chr1:93909229-93909265	GCLM	HGNC:4312	ENSG00000023909	GGGUCUCUCUCGGGCCUCGGGCACCGCGUCCUGUGGG
hsa_m5C_2592	chr1	87340091	87340092	+	ENST00000370544	C747	m5C	C24	5'-GGAAUCGCCUGGUCCCGGGAGAUCGG-3'	...(((.((((....)))).)))... ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	26	chr1:87340069-87340094	LMO4	HGNC:6644	ENSG00000143013	GGAAUCGCCUGGUCCCGGGAGAUCGG
hsa_m5C_2593	chr10	97679838	97679839	-	ENST00000370626	C553	m5C	C11	5'-GGCCCGGGGCCGCAAGCAGGCCUCGG-3'	...((((((((.......)))))))) (-15.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr10:97679824-97679849	AVPI1	HGNC:30898	ENSG00000119986	GGCCCGGGGCCGCAAGCAGGCCUCGG
hsa_m5C_2594	chr1	77978953	77978954	-	ENST00000370768	C119	m5C	C6	5'-GGUGGCGGUGG-3'	NA	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	11	chr1:77978949-77978959	FUBP1	HGNC:4004	ENSG00000162613	GGUGGCGGUGG
hsa_m5C_2595	chr20	62202522	62202523	+	ENST00000370823	C2702	m5C	C12	5'-GGAGGCCGAGGCUGG-3'	...(((....))).. ( -2.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr20:62202512-62202526	MTG2	HGNC:16239	ENSG00000101181	GGAGGCCGAGGCUGG
hsa_m5C_2596	chrX	132217997	132217998	-	ENST00000370874	C203	m5C	C8	5'-GGGGCAGCGGAGAGACAGAGGAGCCAGCGG-3'	..(((.................)))..... ( -2.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chrX:132217976-132218005	RAP2C	HGNC:21165	ENSG00000123728	GGGGCAGCGGAGAGACAGAGGAGCCAGCGG
hsa_m5C_2597	chrX	132217989	132217990	-	ENST00000370874	C211	m5C	C16	5'-GGGGCAGCGGAGAGACAGAGGAGCCAGCGG-3'	..(((.................)))..... ( -2.50)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chrX:132217976-132218005	RAP2C	HGNC:21165	ENSG00000123728	GGGGCAGCGGAGAGACAGAGGAGCCAGCGG
hsa_m5C_2598	chr10	97334145	97334146	-	ENST00000371019	C584	m5C	C4	5'-GGGCCGUGCCGGCGAGGAUGGCUCAGGG-3'	(((((((.((.....))))))))).... (-13.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr10:97334122-97334149	FRAT2	HGNC:16048	ENSG00000181274	GGGCCGUGCCGGCGAGGAUGGCUCAGGG
hsa_m5C_2599	chr10	97334144	97334145	-	ENST00000371019	C585	m5C	C5	5'-GGGCCGUGCCGGCGAGGAUGGCUCAGGG-3'	(((((((.((.....))))))))).... (-13.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr10:97334122-97334149	FRAT2	HGNC:16048	ENSG00000181274	GGGCCGUGCCGGCGAGGAUGGCUCAGGG
hsa_m5C_2600	chr10	97334125	97334126	-	ENST00000371019	C604	m5C	C24	5'-GGGCCGUGCCGGCGAGGAUGGCUCAGGG-3'	(((((((.((.....))))))))).... (-13.30)	loop	mRNA	293T;lung,spleen,Testis,HeLa;HeLa,With in vitro transcribed non-m5C spike-ins;lung	UBS-seq:(High);m5C-RIP-seq:(Medium);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	31061524;38168991	28	chr10:97334122-97334149	FRAT2	HGNC:16048	ENSG00000181274	GGGCCGUGCCGGCGAGGAUGGCUCAGGG
hsa_m5C_2601	chr10	97334567	97334568	-	ENST00000371019	C162	m5C	C25	5'-GGGUGCCAGGACGGGGGGCCAUGCCGUGCCGGAGGG-3'	.(((.((.......)).)))...(((...))).... ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	36	chr10:97334557-97334592	FRAT2	HGNC:16048	ENSG00000181274	GGGUGCCAGGACGGGGGGCCAUGCCGUGCCGGAGGG
hsa_m5C_2602	chr10	97334467	97334468	-	ENST00000371019	C262	m5C	C13	5'-GGUGACGCUGGGCAGCUCGG-3'	..(((.(((....)))))). ( -2.60)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr10:97334461-97334480	FRAT2	HGNC:16048	ENSG00000181274	GGUGACGCUGGGCAGCUCGG
hsa_m5C_2603	chr10	97321347	97321348	+	ENST00000371021	C2078	m5C	C9	5'-GGGUGGCUCUGGGAUCCUGGGGGCCUGGGUUGGG-3'	....((((((.((...)).))))))......... (-11.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	34	chr10:97321340-97321373	FRAT1	HGNC:3944	ENSG00000165879	GGGUGGCUCUGGGAUCCUGGGGGCCUGGGUUGGG
hsa_m5C_2604	chrX	129591964	129591965	+	ENST00000371113	C4582	m5C	C17	5'-GGGUAGGGUCAUACCACAGGGAAAUACCUUUCCUGGG-3'	.((((......)))).(((((((.....))))))).. (-11.60)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	37	chrX:129591949-129591985	OCRL	HGNC:8108	ENSG00000122126	GGGUAGGGUCAUACCACAGGGAAAUACCUUUCCUGGG
hsa_m5C_2605	chr1	63323902	63323903	+	ENST00000371116	C1337	m5C	C6	5'-GGCGGCGGCCGG-3'	(((....))).. ( -5.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database	28418038	12	chr1:63323898-63323909	FOXD3	HGNC:3804	ENSG00000187140	GGCGGCGGCCGG
hsa_m5C_2606	chr1	63323905	63323906	+	ENST00000371116	C1340	m5C	C9	5'-GGCGGCGGCCGG-3'	(((....))).. ( -5.20)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	12	chr1:63323898-63323909	FOXD3	HGNC:3804	ENSG00000187140	GGCGGCGGCCGG
hsa_m5C_2607	chr1	63323906	63323907	+	ENST00000371116	C1341	m5C	C10	5'-GGCGGCGGCCGG-3'	(((....))).. ( -5.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	12	chr1:63323898-63323909	FOXD3	HGNC:3804	ENSG00000187140	GGCGGCGGCCGG
hsa_m5C_2608	chr1	58783172	58783173	-	ENST00000371222	C875	m5C	C3	5'-GGCUCCGGGGGGCGCGG-3'	.((.((....)).)).. ( -5.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr1:58783159-58783175	JUN	HGNC:6204	ENSG00000177606	GGCUCCGGGGGGCGCGG
hsa_m5C_2609	chr1	58783170	58783171	-	ENST00000371222	C877	m5C	C5	5'-GGCUCCGGGGGGCGCGG-3'	.((.((....)).)).. ( -5.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr1:58783159-58783175	JUN	HGNC:6204	ENSG00000177606	GGCUCCGGGGGGCGCGG
hsa_m5C_2610	chr1	58783169	58783170	-	ENST00000371222	C878	m5C	C6	5'-GGCUCCGGGGGGCGCGG-3'	.((.((....)).)).. ( -5.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr1:58783159-58783175	JUN	HGNC:6204	ENSG00000177606	GGCUCCGGGGGGCGCGG
hsa_m5C_2611	chr1	56495683	56495684	-	ENST00000371250	C2350	m5C	C4	5'-GGCCCAGGAAUGAGCAAGGCAUGG-3'	.(((.............))).... ( -2.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	24	chr1:56495664-56495687	PLPP3	HGNC:9229	ENSG00000162407	GGCCCAGGAAUGAGCAAGGCAUGG
hsa_m5C_2612	chr1	54851401	54851402	-	ENST00000371269	C2458	m5C	C14	5'-GGAUCCAGGGGACCUGG-3'	....(((((...))))) ( -5.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	17	chr1:54851399-54851415	DHCR24	HGNC:2859	ENSG00000116133	GGAUCCAGGGGACCUGG
hsa_m5C_2613	chr1	54851319	54851320	-	ENST00000371269	C2540	m5C	C14	5'-GGGAGUGGGUCCGCGCUGCUCUGCAGCAGGGGCUGGGG-3'	.......(((((..(((((...)))))..))))).... (-15.20)	bulge	mRNA	frontal_cortex	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	38	chr1:54851296-54851333	DHCR24	HGNC:2859	ENSG00000116133	GGGAGUGGGUCCGCGCUGCUCUGCAGCAGGGGCUGGGG
hsa_m5C_2614	chr1	54758356	54758357	-	ENST00000371279	C897	m5C	C17	5'-GGAUAUUGGAGAGGACCGG-3'	......(((......))). ( -0.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	19	chr1:54758355-54758373	PARS2	HGNC:30563	ENSG00000162396	GGAUAUUGGAGAGGACCGG
hsa_m5C_2615	chr1	54758021	54758022	-	ENST00000371279	C1232	m5C	C3	5'-GGCAGUAAGGAGCAGGCGG-3'	.((.((.....))..)).. ( -1.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr1:54758006-54758024	PARS2	HGNC:30563	ENSG00000162396	GGCAGUAAGGAGCAGGCGG
hsa_m5C_2616	chr1	53946538	53946539	+	ENST00000371370	C190	m5C	C3	5'-GGCAGGGGCACAG^G-3'	.((....))..... ( -0.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	14	chr1:53946537-53946549;53947788-53947788	LRRC42	HGNC:28792	ENSG00000116212	GGCAGGGGCACAGG
hsa_m5C_2617	chr10	93894008	93894009	+	ENST00000371408	C37	m5C	C19	5'-GGCGCCAGACGGCACCGGCCGCUGG-3'	....((((.((((....)))))))) (-12.20)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr10:93893991-93894015	SLC35G1	HGNC:26607	ENSG00000176273	GGCGCCAGACGGCACCGGCCGCUGG
hsa_m5C_2618	chr9	137448534	137448535	-	ENST00000371475	C2684	m5C	C16	5'-GGGGCUUGGCAGGGGCCCAGCUGGGGCUGGGCCCUG-3'	...........((((((((((....)))))))))). (-21.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	36	chr9:137448515-137448550	NSMF	HGNC:29843	ENSG00000165802	GGGGCUUGGCAGGGGCCCAGCUGGGGCUGGGCCCUG
hsa_m5C_2619	chr9	137448518	137448519	-	ENST00000371475	C2700	m5C	C32	5'-GGGGCUUGGCAGGGGCCCAGCUGGGGCUGGGCCCUG-3'	...........((((((((((....)))))))))). (-21.70)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	36	chr9:137448515-137448550	NSMF	HGNC:29843	ENSG00000165802	GGGGCUUGGCAGGGGCCCAGCUGGGGCUGGGCCCUG
hsa_m5C_2620	chr1	53085121	53085122	+	ENST00000371500	C2876	m5C	C16	5'-GGGGACAGGAGCCUUCAGGACUGCUGG-3'	.....(((.((((....)).)).))). ( -7.60)	loop	mRNA	heart	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	27	chr1:53085107-53085133	PODN	HGNC:23174	ENSG00000174348	GGGGACAGGAGCCUUCAGGACUGCUGG
hsa_m5C_2621	chr1	52686596	52686597	-	ENST00000371538	C1840	m5C	C11	5'-GGCGUGGUGGCAGG-3'	.((......))... ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	14	chr1:52686594-52686607	COA7	HGNC:25716	ENSG00000162377	GGCGUGGUGGCAGG
hsa_m5C_2622	chr9	137169004	137169005	-	ENST00000371542	C962	m5C	C24	5'-GGCUUCCUGCCUGGCGCUGGGCUCUGGG-3'	(((.....))).(((.....)))..... ( -6.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	28	chr9:137169001-137169028	LRRC26	HGNC:31409	ENSG00000184709	GGCUUCCUGCCUGGCGCUGGGCUCUGGG
hsa_m5C_2623	chr20	51432219	51432220	-	ENST00000371564	C2789	m5C	C26	5'-GGUCAGUCAAGGUCAGAGGCUGAGCCCGG-3'	((((((((.........)))))).))... ( -8.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr20:51432217-51432245	NFATC2	HGNC:7776	ENSG00000101096	GGUCAGUCAAGGUCAGAGGCUGAGCCCGG
hsa_m5C_2624	chr9	137114716	137114717	-	ENST00000371579	C17	m5C	C17	5'-GGGCGCCCGCGGAAGGCGACAUGGG-3'	...((((.......))))....... ( -5.40)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr9:137114709-137114733	DPP7	HGNC:14892	ENSG00000176978	GGGCGCCCGCGGAAGGCGACAUGGG
hsa_m5C_2625	chr9	137113442	137113443	-	ENST00000371579	C559	m5C	C6	5'-GGUGGCGGGG-3'	NA	loop	mRNA	293T;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database;RMVar database	28418038	10	chr9:137113439-137113448	DPP7	HGNC:14892	ENSG00000176978	GGUGGCGGGG
hsa_m5C_2626	chr1	52366131	52366132	-	ENST00000371586	C62	m5C	C5	5'-GGGCCCGCGGGAGCCCAGGGCGGUGCCGGG-3'	.(((((((((....))...)))).)))... (-12.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr1:52366107-52366136	CC2D1B	HGNC:29386	ENSG00000154222	GGGCCCGCGGGAGCCCAGGGCGGUGCCGGG
hsa_m5C_2627	chr9	137041179	137041180	-	ENST00000371600	C1174	m5C	C9	5'-G^GCGGGGGCCGG-3'	(((....))).. ( -5.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	12	chr9:137041177-137041187;137042927-137042927	NPDC1	HGNC:7899	ENSG00000107281	GGCGGGGGCCGG
hsa_m5C_2628	chr9	137041178	137041179	-	ENST00000371600	C1175	m5C	C10	5'-G^GCGGGGGCCGG-3'	(((....))).. ( -5.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	12	chr9:137041177-137041187;137042927-137042927	NPDC1	HGNC:7899	ENSG00000107281	GGCGGGGGCCGG
hsa_m5C_2629	chr9	137044076	137044077	-	ENST00000371600	C16	m5C	C4	5'-GGGCUGGGCAGAGAGGAAGAGUCCUGG-3'	(((((..............)))))... ( -5.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	27	chr9:137044054-137044080	NPDC1	HGNC:7899	ENSG00000107281	GGGCUGGGCAGAGAGGAAGAGUCCUGG
hsa_m5C_2630	chr9	136993223	136993224	+	ENST00000371620	C424	m5C	C5	5'-GGAGCCUGGAGCGGCGACUGG-3'	...(((......)))...... ( -4.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	21	chr9:136993220-136993240	PAXX	HGNC:27849	ENSG00000148362	GGAGCCUGGAGCGGCGACUGG
hsa_m5C_2631	chr9	136993224	136993225	+	ENST00000371620	C425	m5C	C6	5'-GGAGCCUGGAGCGGCGACUGG-3'	...(((......)))...... ( -4.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	21	chr9:136993220-136993240	PAXX	HGNC:27849	ENSG00000148362	GGAGCCUGGAGCGGCGACUGG
hsa_m5C_2632	chr9	136993236	136993237	+	ENST00000371620	C437	m5C	C18	5'-GGAGCCUGGAGCGGCGACUGG-3'	...(((......)))...... ( -4.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	21	chr9:136993220-136993240	PAXX	HGNC:27849	ENSG00000148362	GGAGCCUGGAGCGGCGACUGG
hsa_m5C_2633	chrX	118975207	118975208	+	ENST00000371628	C591	m5C	C3	5'-GGCCGCCGCGGCUGCGGCGGCCACCGAGG-3'	(((((((((....)))))))))....... (-22.50)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	29	chrX:118975206-118975234	LONRF3	HGNC:21152	ENSG00000175556	GGCCGCCGCGGCUGCGGCGGCCACCGAGG
hsa_m5C_2634	chrX	118975208	118975209	+	ENST00000371628	C592	m5C	C4	5'-GGCCGCCGCGGCUGCGGCGGCCACCGAGG-3'	(((((((((....)))))))))....... (-22.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	29	chrX:118975206-118975234	LONRF3	HGNC:21152	ENSG00000175556	GGCCGCCGCGGCUGCGGCGGCCACCGAGG
hsa_m5C_2635	chrX	118975210	118975211	+	ENST00000371628	C594	m5C	C6	5'-GGCCGCCGCGGCUGCGGCGGCCACCGAGG-3'	(((((((((....)))))))))....... (-22.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	29	chrX:118975206-118975234	LONRF3	HGNC:21152	ENSG00000175556	GGCCGCCGCGGCUGCGGCGGCCACCGAGG
hsa_m5C_2636	chrX	118975211	118975212	+	ENST00000371628	C595	m5C	C7	5'-GGCCGCCGCGGCUGCGGCGGCCACCGAGG-3'	(((((((((....)))))))))....... (-22.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	29	chrX:118975206-118975234	LONRF3	HGNC:21152	ENSG00000175556	GGCCGCCGCGGCUGCGGCGGCCACCGAGG
hsa_m5C_2637	chrX	118975213	118975214	+	ENST00000371628	C597	m5C	C9	5'-GGCCGCCGCGGCUGCGGCGGCCACCGAGG-3'	(((((((((....)))))))))....... (-22.50)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	29	chrX:118975206-118975234	LONRF3	HGNC:21152	ENSG00000175556	GGCCGCCGCGGCUGCGGCGGCCACCGAGG
hsa_m5C_2638	chrX	118975219	118975220	+	ENST00000371628	C603	m5C	C15	5'-GGCCGCCGCGGCUGCGGCGGCCACCGAGG-3'	(((((((((....)))))))))....... (-22.50)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	29	chrX:118975206-118975234	LONRF3	HGNC:21152	ENSG00000175556	GGCCGCCGCGGCUGCGGCGGCCACCGAGG
hsa_m5C_2639	chrX	118975222	118975223	+	ENST00000371628	C606	m5C	C18	5'-GGCCGCCGCGGCUGCGGCGGCCACCGAGG-3'	(((((((((....)))))))))....... (-22.50)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	29	chrX:118975206-118975234	LONRF3	HGNC:21152	ENSG00000175556	GGCCGCCGCGGCUGCGGCGGCCACCGAGG
hsa_m5C_2640	chrX	118975225	118975226	+	ENST00000371628	C609	m5C	C21	5'-GGCCGCCGCGGCUGCGGCGGCCACCGAGG-3'	(((((((((....)))))))))....... (-22.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	29	chrX:118975206-118975234	LONRF3	HGNC:21152	ENSG00000175556	GGCCGCCGCGGCUGCGGCGGCCACCGAGG
hsa_m5C_2641	chrX	118975226	118975227	+	ENST00000371628	C610	m5C	C22	5'-GGCCGCCGCGGCUGCGGCGGCCACCGAGG-3'	(((((((((....)))))))))....... (-22.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	29	chrX:118975206-118975234	LONRF3	HGNC:21152	ENSG00000175556	GGCCGCCGCGGCUGCGGCGGCCACCGAGG
hsa_m5C_2642	chr20	50124941	50124942	-	ENST00000371652	C1015	m5C	C20	5'-GGAGAGGACAUCUCCUGGGCUGG-3'	(((((.....)))))........ ( -6.90)	loop	mRNA	HeLa	RBS-Seq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30872485	23	chr20:50124939-50124961	PEDS1	HGNC:16735	ENSG00000240849	GGAGAGGACAUCUCCUGGGCUGG
hsa_m5C_2643	chr20	50124672	50124673	-	ENST00000371652	C1284	m5C	C13	5'-GGCCCCAGUGGUCUGGGG-3'	..((((((....)))))) (-10.30)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	18	chr20:50124668-50124685	PEDS1	HGNC:16735	ENSG00000240849	GGCCCCAGUGGUCUGGGG
hsa_m5C_2644	chr1	51910544	51910545	-	ENST00000371655	C10191	m5C	C11	5'-GGCGUAUGGUCCUGGUUUCUGAGG-3'	(((.....)))............. ( -1.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr1:51910532-51910555	RAB3B	HGNC:9778	ENSG00000169213	GGCGUAUGGUCCUGGUUUCUGAGG
hsa_m5C_2645	chr9	136721114	136721115	+	ENST00000371691	C231	m5C	C21	5'-GGGAGCAGAGGGGCUGGACGCGG-3'	...(((......)))........ ( -2.20)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	23	chr9:136721095-136721117	DIPK1B	HGNC:28290	ENSG00000165716	GGGAGCAGAGGGGCUGGACGCGG
hsa_m5C_2646	chr9	136438714	136438715	-	ENST00000371712	C1131	m5C	C3	5'-GGCCCCGGCCGGCCGCGG-3'	((((......)))).... ( -7.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr9:136438700-136438717	INPP5E	HGNC:21474	ENSG00000148384	GGCCCCGGCCGGCCGCGG
hsa_m5C_2647	chr20	49247119	49247120	-	ENST00000371752	C5989	m5C	C6	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr20:49247111-49247125	ZNFX1	HGNC:29271	ENSG00000124201	GGAGGCCGAGGCAGG
hsa_m5C_2648	chr20	49247118	49247119	-	ENST00000371752	C5990	m5C	C7	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr20:49247111-49247125	ZNFX1	HGNC:29271	ENSG00000124201	GGAGGCCGAGGCAGG
hsa_m5C_2649	chr9	135961281	135961282	-	ENST00000371756	C92	m5C	C12	5'-GGGAGCCGGGGCGGGGCGGCGG-3'	....((((........)))).. ( -7.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	22	chr9:135961272-135961293	UBAC1	HGNC:30221	ENSG00000130560	GGGAGCCGGGGCGGGGCGGCGG
hsa_m5C_2650	chr9	135961276	135961277	-	ENST00000371756	C97	m5C	C17	5'-GGGAGCCGGGGCGGGGCGGCGG-3'	....((((........)))).. ( -7.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	22	chr9:135961272-135961293	UBAC1	HGNC:30221	ENSG00000130560	GGGAGCCGGGGCGGGGCGGCGG
hsa_m5C_2651	chr9	135771043	135771044	+	ENST00000371757	C2031	m5C	C21	5'-GGGCCUUCUCGGGGCAGGGGCUGCACGAGGG-3'	......(((((..((((...)))).))))). (-10.00)	loop	mRNA	spleen	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	31	chr9:135771024-135771054	KCNT1	HGNC:18865	ENSG00000107147	GGGCCUUCUCGGGGCAGGGGCUGCACGAGGG
hsa_m5C_2652	chr20	49117155	49117156	-	ENST00000371856	C1980	m5C	C6	5'-GGUAUCGGCAAGGAUGUGG-3'	..((((......))))... ( -1.60)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	19	chr20:49117143-49117161	STAU1	HGNC:11370	ENSG00000124214	GGUAUCGGCAAGGAUGUGG
hsa_m5C_2653	chr20	49033318	49033319	+	ENST00000371917	C5657	m5C	C4	5'-GGCCUGGAAACGGAUGG-3'	...(((....))).... ( -1.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr20:49033316-49033332	ARFGEF2	HGNC:15853	ENSG00000124198	GGCCUGGAAACGGAUGG
hsa_m5C_2654	chr1	46196059	46196060	-	ENST00000371992	C1023	m5C	C10	5'-GGAUGAGGCCCGGGAGCAGG-3'	((.......))......... ( -0.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr1:46196050-46196069	POMGNT1	HGNC:19139	ENSG00000085998	GGAUGAGGCCCGGGAGCAGG
hsa_m5C_2655	chr1	46196058	46196059	-	ENST00000371992	C1024	m5C	C11	5'-GGAUGAGGCCCGGGAGCAGG-3'	((.......))......... ( -0.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr1:46196050-46196069	POMGNT1	HGNC:19139	ENSG00000085998	GGAUGAGGCCCGGGAGCAGG
hsa_m5C_2656	chrX	110175580	110175581	+	ENST00000372068	C3363	m5C	C9	5'-GGAGGGCACUUUCUGGUGCUUGG-3'	...(((((((....))))))).. ( -7.70)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chrX:110175573-110175595	TMEM164	HGNC:26217	ENSG00000157600	GGAGGGCACUUUCUGGUGCUUGG
hsa_m5C_2657	chr9	133067091	133067092	+	ENST00000372080	C804	m5C	C15	5'-GGCCAAAAAG^GUGGCUGAGAAGG-3'	(((((......)))))....... ( -6.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr9:133066936-133066945;133067088-133067100	CEL	HGNC:1848	ENSG00000170835	GGCCAAAAAGGUGGCUGAGAAGG
hsa_m5C_2658	chr1	45491076	45491077	-	ENST00000372086	C87	m5C	C3	5'-GGCGGGGGGAGCGG-3'	.((.......)).. ( -1.30)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	14	chr1:45491066-45491079	TESK2	HGNC:11732	ENSG00000070759	GGCGGGGGGAGCGG
hsa_m5C_2659	chr1	45343731	45343732	+	ENST00000372090	C1646	m5C	C8	5'-GGUGGAACAGAGGUAUUUUGG-3'	.......((((.....)))). ( -0.40)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr1:45343725-45343745	TOE1	HGNC:15954	ENSG00000132773	GGUGGAACAGAGGUAUUUUGG
hsa_m5C_2660	chr9	133057880	133057881	+	ENST00000372108	C1490	m5C	C7	5'-GGAAGACGAGGAGGAUGAGGAGGAGGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	29	chr9:133057875-133057903	GTF3C5	HGNC:4668	ENSG00000148308	GGAAGACGAGGAGGAUGAGGAGGAGGAGG
hsa_m5C_2661	chr9	132889689	132889690	+	ENST00000372136	C2195	m5C	C7	5'-GGAUUACAGGUGUGAGCCACGGCACCUGG-3'	......(((((((........))))))). (-11.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	29	chr9:132889684-132889712	SPACA9	HGNC:1367	ENSG00000165698	GGAUUACAGGUGUGAGCCACGGCACCUGG
hsa_m5C_2662	chr9	132690213	132690214	+	ENST00000372146	C3873	m5C	C13	5'-GGGAGGCCGAGGCAGACGG-3'	((....))........... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr9:132690202-132690220	GTF3C4	HGNC:4667	ENSG00000125484	GGGAGGCCGAGGCAGACGG
hsa_m5C_2663	chr1	45011046	45011047	-	ENST00000372172	C278	m5C	C15	5'-GGGAGGCAGAGGGCCUGGGGCUGCGUGUGGG-3'	.....(((...((((...))))...)))... ( -6.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	31	chr1:45011031-45011061	HECTD3	HGNC:26117	ENSG00000126107	GGGAGGCAGAGGGCCUGGGGCUGCGUGUGGG
hsa_m5C_2664	chr1	44805786	44805787	+	ENST00000372201	C2137	m5C	C21	5'-GGGCUUUGGGCCGAAUCCCCCAGGGAAUCAGGG-3'	.((((...))))((.((((...)))).)).... (-10.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	33	chr1:44805767-44805799	PLK3	HGNC:2154	ENSG00000173846	GGGCUUUGGGCCGAAUCCCCCAGGGAAUCAGGG
hsa_m5C_2665	chr9	131531231	131531232	-	ENST00000372215	C32	m5C	C10	5'-GGGCGGGCGCGCCGGG-3'	.((((....))))... ( -7.30)	bulge	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr9:131531226-131531241	UCK1	HGNC:14859	ENSG00000130717	GGGCGGGCGCGCCGGG
hsa_m5C_2666	chr1	44753189	44753190	+	ENST00000372217	C687	m5C	C11	5'-GGAUGGUCAGCGAGGAGAUGG-3'	.....(((........))).. ( -0.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	21	chr1:44753180-44753200	KIF2C	HGNC:6393	ENSG00000142945	GGAUGGUCAGCGAGGAGAUGG
hsa_m5C_2667	chr9	131259313	131259314	-	ENST00000372271	C2691	m5C	C13	5'-GGUCCCAGGUCACUGGAGCUCCAGG-3'	(((.((((....)))).)))..... ( -7.40)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	38168991;m6A-Atlas database;RMVar database	28418038;31061524;38168991	25	chr9:131259302-131259326	FAM78A	HGNC:25465	ENSG00000126882	GGUCCCAGGUCACUGGAGCUCCAGG
hsa_m5C_2668	chr9	131120601	131120602	+	ENST00000372309	C965	m5C	C10	5'-GGGCAGGGCCAGGGCAGGG-3'	.(((...)))......... ( -2.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold;rG4-seq:(High)	RMBase database;m6A-Atlas database	28418038;31061524	19	chr9:131120593-131120611	AIF1L	HGNC:28904	ENSG00000126878	GGGCAGGGCCAGGGCAGGG
hsa_m5C_2669	chr10	79384116	79384117	-	ENST00000372336	C3138	m5C	C6	5'-GGGGGCUGGGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	11	chr10:79384112-79384122	ZCCHC24	HGNC:26911	ENSG00000165424	GGGGGCUGGGG
hsa_m5C_2670	chr10	79386240	79386241	-	ENST00000372336	C1014	m5C	C8	5'-GGGGUGCCCUCGCAGGCCUGCGGGGCUGGGCCGGGGG-3'	......(((((((((.((....)).)))...)))))) (-16.60)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	37	chr10:79386212-79386248	ZCCHC24	HGNC:26911	ENSG00000165424	GGGGUGCCCUCGCAGGCCUGCGGGGCUGGGCCGGGGG
hsa_m5C_2671	chr9	130904078	130904079	-	ENST00000372338	C2011	m5C	C8	5'-GGCCGGUCCGGGAGG-3'	..(((...))).... ( -1.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr9:130904072-130904086	FIBCD1	HGNC:25922	ENSG00000130720	GGCCGGUCCGGGAGG
hsa_m5C_2672	chr9	130904077	130904078	-	ENST00000372338	C2012	m5C	C9	5'-GGCCGGUCCGGGAGG-3'	..(((...))).... ( -1.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr9:130904072-130904086	FIBCD1	HGNC:25922	ENSG00000130720	GGCCGGUCCGGGAGG
hsa_m5C_2673	chr9	130902937	130902938	-	ENST00000372338	C3152	m5C	C22	5'-GGGCAAAUGGGGUCGGGGGGACUGGGG-3'	..........((((.....)))).... ( -3.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	27	chr9:130902933-130902959	FIBCD1	HGNC:25922	ENSG00000130720	GGGCAAAUGGGGUCGGGGGGACUGGGG
hsa_m5C_2674	chr9	130904133	130904134	-	ENST00000372338	C1956	m5C	C7	5'-GGUCCUCCUGGACCGGCUGG-3'	(((((....)))))...... ( -9.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr9:130904121-130904140	FIBCD1	HGNC:25922	ENSG00000130720	GGUCCUCCUGGACCGGCUGG
hsa_m5C_2675	chr9	130904132	130904133	-	ENST00000372338	C1957	m5C	C8	5'-GGUCCUCCUGGACCGGCUGG-3'	(((((....)))))...... ( -9.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr9:130904121-130904140	FIBCD1	HGNC:25922	ENSG00000130720	GGUCCUCCUGGACCGGCUGG
hsa_m5C_2676	chr9	130904126	130904127	-	ENST00000372338	C1963	m5C	C14	5'-GGUCCUCCUGGACCGGCUGG-3'	(((((....)))))...... ( -9.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr9:130904121-130904140	FIBCD1	HGNC:25922	ENSG00000130720	GGUCCUCCUGGACCGGCUGG
hsa_m5C_2677	chr9	130885611	130885612	+	ENST00000372348	C4656	m5C	C10	5'-GGCAGUGGUCCAGCGGCCACUCAGG-3'	...(((((((....))))))).... ( -9.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	25	chr9:130885603-130885627	ABL1	HGNC:76	ENSG00000097007	GGCAGUGGUCCAGCGGCCACUCAGG
hsa_m5C_2678	chr9	130885612	130885613	+	ENST00000372348	C4657	m5C	C11	5'-GGCAGUGGUCCAGCGGCCACUCAGG-3'	...(((((((....))))))).... ( -9.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	25	chr9:130885603-130885627	ABL1	HGNC:76	ENSG00000097007	GGCAGUGGUCCAGCGGCCACUCAGG
hsa_m5C_2679	chr9	130886017	130886018	+	ENST00000372348	C5062	m5C	C14	5'-GGCCAGGUGGGAACGG-3'	..((....))...... ( -0.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr9:130886005-130886020	ABL1	HGNC:76	ENSG00000097007	GGCCAGGUGGGAACGG
hsa_m5C_2680	chr9	130886596	130886597	+	ENST00000372348	C5641	m5C	C3	5'-GGCCCAGGCAGGUCUGCAAGG-3'	((((......))))....... ( -4.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	21	chr9:130886595-130886615	ABL1	HGNC:76	ENSG00000097007	GGCCCAGGCAGGUCUGCAAGG
hsa_m5C_2681	chr9	130886597	130886598	+	ENST00000372348	C5642	m5C	C4	5'-GGCCCAGGCAGGUCUGCAAGG-3'	((((......))))....... ( -4.10)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038;22344696	21	chr9:130886595-130886615	ABL1	HGNC:76	ENSG00000097007	GGCCCAGGCAGGUCUGCAAGG
hsa_m5C_2682	chr9	130886598	130886599	+	ENST00000372348	C5643	m5C	C5	5'-GGCCCAGGCAGGUCUGCAAGG-3'	((((......))))....... ( -4.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	21	chr9:130886595-130886615	ABL1	HGNC:76	ENSG00000097007	GGCCCAGGCAGGUCUGCAAGG
hsa_m5C_2683	chr9	130704461	130704462	+	ENST00000372358	C1582	m5C	C6	5'-GGAGGCGGAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	11	chr9:130704457-130704467	EXOSC2	HGNC:17097	ENSG00000130713	GGAGGCGGAGG
hsa_m5C_2684	chr10	77976560	77976561	-	ENST00000372371	C5198	m5C	C15	5'-GGUACCCGGGGUAGCCAUUGG-3'	((((((...))).)))..... ( -4.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr10:77976555-77976575	POLR3A	HGNC:30074	ENSG00000148606	GGUACCCGGGGUAGCCAUUGG
hsa_m5C_2685	chr10	77821777	77821778	-	ENST00000372391	C2941	m5C	C4	5'-GGACCGUGGCUUUGGGCUGGUGG-3'	..(((..((((...))))))).. ( -4.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr10:77821759-77821781	DLG5	HGNC:2904	ENSG00000151208	GGACCGUGGCUUUGGGCUGGUGG
hsa_m5C_2686	chr10	77926561	77926562	-	ENST00000372391	C194	m5C	C8	5'-GGGGGGCCCGGGAGGCGUCCGGCGGGGCGGGG-3'	(((...)))......(((((....)))))... (-10.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	32	chr10:77926538-77926569	DLG5	HGNC:2904	ENSG00000151208	GGGGGGCCCGGGAGGCGUCCGGCGGGGCGGGG
hsa_m5C_2687	chr10	77926560	77926561	-	ENST00000372391	C195	m5C	C9	5'-GGGGGGCCCGGGAGGCGUCCGGCGGGGCGGGG-3'	(((...)))......(((((....)))))... (-10.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	32	chr10:77926538-77926569	DLG5	HGNC:2904	ENSG00000151208	GGGGGGCCCGGGAGGCGUCCGGCGGGGCGGGG
hsa_m5C_2688	chr9	130172576	130172577	+	ENST00000372398	C174	m5C	C9	5'-GGCGCGGCCCCGGCCCGG-3'	..((.(((....))))). ( -5.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr9:130172569-130172586	NCS1	HGNC:3953	ENSG00000107130	GGCGCGGCCCCGGCCCGG
hsa_m5C_2689	chr9	130172581	130172582	+	ENST00000372398	C179	m5C	C14	5'-GGCGCGGCCCCGGCCCGG-3'	..((.(((....))))). ( -5.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr9:130172569-130172586	NCS1	HGNC:3953	ENSG00000107130	GGCGCGGCCCCGGCCCGG
hsa_m5C_2690	chr9	129827902	129827903	-	ENST00000372447	C1182	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr9:129827900-129827914	C9orf78	HGNC:24932	ENSG00000136819	GGAGGCUGAGGCAGG
hsa_m5C_2691	chr9	129828044	129828045	-	ENST00000372447	C1040	m5C	C8	5'-GGGAGGCCGAGGUGGG-3'	((....))........ ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr9:129828037-129828052	C9orf78	HGNC:24932	ENSG00000136819	GGGAGGCCGAGGUGGG
hsa_m5C_2692	chr9	129175948	129175949	-	ENST00000372491	C2313	m5C	C15	5'-GGGGAGGGAGGGGCCGGG-3'	.....((......))... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	18	chr9:129175946-129175963	IER5L	HGNC:23679	ENSG00000188483	GGGGAGGGAGGGGCCGGG
hsa_m5C_2693	chr9	129176808	129176809	-	ENST00000372491	C1453	m5C	C5	5'-GGGGCCCCGCGGGGCUGGGGCCAGACAAAGACUCGGCAAAGGGG-3'	..((((((((...)).)))))).........(((......))). (-16.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	44	chr9:129176770-129176813	IER5L	HGNC:23679	ENSG00000188483	GGGGCCCCGCGGGGCUGGGGCCAGACAAAGACUCGGCAAAGGGG
hsa_m5C_2694	chr9	129176807	129176808	-	ENST00000372491	C1454	m5C	C6	5'-GGGGCCCCGCGGGGCUGGGGCCAGACAAAGACUCGGCAAAGGGG-3'	..((((((((...)).)))))).........(((......))). (-16.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	44	chr9:129176770-129176813	IER5L	HGNC:23679	ENSG00000188483	GGGGCCCCGCGGGGCUGGGGCCAGACAAAGACUCGGCAAAGGGG
hsa_m5C_2695	chr1	42843449	42843450	+	ENST00000372517	C1899	m5C	C13	5'-GGAGGGAGGAUUCCUGG-3'	((((......))))... ( -3.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr1:42843438-42843454	ERMAP	HGNC:15743	ENSG00000164010	GGAGGGAGGAUUCCUGG
hsa_m5C_2696	chr20	45884910	45884911	+	ENST00000372523	C2414	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;heart,Muscle,spleen,T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr20:45884906-45884920	ZSWIM1	HGNC:16155	ENSG00000168612	GGAGGCUGAGGCAGG
hsa_m5C_2697	chr20	45884916	45884917	+	ENST00000372523	C2420	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;heart,lung,Muscle,T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr20:45884906-45884920	ZSWIM1	HGNC:16155	ENSG00000168612	GGAGGCUGAGGCAGG
hsa_m5C_2698	chr20	45885165	45885166	+	ENST00000372523	C2669	m5C	C19	5'-GGGCUGGGAGGCUUCCUACAGGGGAAGAGGCCCCUCUGGGG-3'	.((((....)))).((((.(((((......))))).)))). (-17.00)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	41	chr20:45885148-45885188	ZSWIM1	HGNC:16155	ENSG00000168612	GGGCUGGGAGGCUUCCUACAGGGGAAGAGGCCCCUCUGGGG
hsa_m5C_2699	chr20	45802007	45802008	+	ENST00000372622	C559	m5C	C9	5'-GGAAAGGACGGCCUCCUGG-3'	....((((.....)))).. ( -2.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr20:45802000-45802018	DNTTIP1	HGNC:16160	ENSG00000101457	GGAAAGGACGGCCUCCUGG
hsa_m5C_2700	chr1	40862352	40862353	-	ENST00000372638	C11	m5C	C9	5'-GGAGGUUUCGGAGCACUACAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	22	chr1:40862340-40862361	CITED4	HGNC:18696	ENSG00000179862	GGAGGUUUCGGAGCACUACAGG
hsa_m5C_2701	chr1	40861440	40861441	-	ENST00000372638	C923	m5C	C5	5'-GGCCCGGCACCGGACUGG-3'	((.(((....))).)).. ( -3.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr1:40861428-40861445	CITED4	HGNC:18696	ENSG00000179862	GGCCCGGCACCGGACUGG
hsa_m5C_2702	chr1	40861568	40861569	-	ENST00000372638	C795	m5C	C3	5'-GGCGGCCGGCGCCCGCCCGG-3'	((((((....)).))))... ( -8.30)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	20	chr1:40861552-40861571	CITED4	HGNC:18696	ENSG00000179862	GGCGGCCGGCGCCCGCCCGG
hsa_m5C_2703	chr9	128818869	128818870	+	ENST00000372642	C371	m5C	C19	5'-GGGACCCCGCGGCCCGGGCGAGCUGGCCAAGUACGGGCUGCCGGG-3'	....(((.(((((((((((......))).....)))))))).))) (-25.60)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	45	chr9:128818852-128818896	ENDOG	HGNC:3346	ENSG00000167136	GGGACCCCGCGGCCCGGGCGAGCUGGCCAAGUACGGGCUGCCGGG
hsa_m5C_2704	chr9	128809473	128809474	+	ENST00000372648	C2899	m5C	C11	5'-GGCUUUGGGCCAGGAAAGG-3'	((((...))))........ ( -4.60)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	19	chr9:128809464-128809482	TBC1D13	HGNC:25571	ENSG00000107021	GGCUUUGGGCCAGGAAAGG
hsa_m5C_2705	chr1	40665475	40665476	-	ENST00000372684	C207	m5C	C21	5'-GGGUUCGCGGGGCGGGGUCCCGGG-3'	.......((((((...)))))).. ( -9.00)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	24	chr1:40665473-40665496	RIMS3	HGNC:21292	ENSG00000117016	GGGUUCGCGGGGCGGGGUCCCGGG
hsa_m5C_2706	chr9	128633735	128633736	-	ENST00000372715	C1740	m5C	C15	5'-GGCCUGAGGGGUCCCGGGAGGCGGG-3'	.((((..((....))...))))... ( -8.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr9:128633726-128633750	DYNC2I2	HGNC:28296	ENSG00000119333	GGCCUGAGGGGUCCCGGGAGGCGGG
hsa_m5C_2707	chr9	128633728	128633729	-	ENST00000372715	C1747	m5C	C22	5'-GGCCUGAGGGGUCCCGGGAGGCGGG-3'	.((((..((....))...))))... ( -8.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr9:128633726-128633750	DYNC2I2	HGNC:28296	ENSG00000119333	GGCCUGAGGGGUCCCGGGAGGCGGG
hsa_m5C_2708	chr1	40373974	40373975	+	ENST00000372718	C249	m5C	C5	5'-GGGGCGUCCGGCGGGGCCGGAGGAGAGGG-3'	......((((((...))))))........ ( -9.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	29	chr1:40373971-40373999	SMAP2	HGNC:25082	ENSG00000084070	GGGGCGUCCGGCGGGGCCGGAGGAGAGGG
hsa_m5C_2709	chr1	40373977	40373978	+	ENST00000372718	C252	m5C	C8	5'-GGGGCGUCCGGCGGGGCCGGAGGAGAGGG-3'	......((((((...))))))........ ( -9.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	29	chr1:40373971-40373999	SMAP2	HGNC:25082	ENSG00000084070	GGGGCGUCCGGCGGGGCCGGAGGAGAGGG
hsa_m5C_2710	chr1	40373978	40373979	+	ENST00000372718	C253	m5C	C9	5'-GGGGCGUCCGGCGGGGCCGGAGGAGAGGG-3'	......((((((...))))))........ ( -9.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	29	chr1:40373971-40373999	SMAP2	HGNC:25082	ENSG00000084070	GGGGCGUCCGGCGGGGCCGGAGGAGAGGG
hsa_m5C_2711	chr10	74094320	74094321	+	ENST00000372755	C1497	m5C	C18	5'-GGCCAAACAGGUGGCCACGG-3'	(((((......))))).... ( -8.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr10:74094304-74094323	VCL	HGNC:12665	ENSG00000035403	GGCCAAACAGGUGGCCACGG
hsa_m5C_2712	chr1	39901289	39901290	-	ENST00000372816	C628	m5C	C12	5'-GGGGCUUGGGUCCCGGCGCAGGGGACCCGGCCCCCGG-3'	((((((.(((((((.......)))))))))))))... (-28.00)	bulge	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	37	chr1:39901265-39901301	MYCL	HGNC:7555	ENSG00000116990	GGGGCUUGGGUCCCGGCGCAGGGGACCCGGCCCCCGG
hsa_m5C_2713	chr1	39901288	39901289	-	ENST00000372816	C629	m5C	C13	5'-GGGGCUUGGGUCCCGGCGCAGGGGACCCGGCCCCCGG-3'	((((((.(((((((.......)))))))))))))... (-28.00)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	37	chr1:39901265-39901301	MYCL	HGNC:7555	ENSG00000116990	GGGGCUUGGGUCCCGGCGCAGGGGACCCGGCCCCCGG
hsa_m5C_2714	chr1	39901287	39901288	-	ENST00000372816	C630	m5C	C14	5'-GGGGCUUGGGUCCCGGCGCAGGGGACCCGGCCCCCGG-3'	((((((.(((((((.......)))))))))))))... (-28.00)	bulge	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	37	chr1:39901265-39901301	MYCL	HGNC:7555	ENSG00000116990	GGGGCUUGGGUCCCGGCGCAGGGGACCCGGCCCCCGG
hsa_m5C_2715	chr1	39901275	39901276	-	ENST00000372816	C642	m5C	C26	5'-GGGGCUUGGGUCCCGGCGCAGGGGACCCGGCCCCCGG-3'	((((((.(((((((.......)))))))))))))... (-28.00)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	37	chr1:39901265-39901301	MYCL	HGNC:7555	ENSG00000116990	GGGGCUUGGGUCCCGGCGCAGGGGACCCGGCCCCCGG
hsa_m5C_2716	chr1	39901274	39901275	-	ENST00000372816	C643	m5C	C27	5'-GGGGCUUGGGUCCCGGCGCAGGGGACCCGGCCCCCGG-3'	((((((.(((((((.......)))))))))))))... (-28.00)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	37	chr1:39901265-39901301	MYCL	HGNC:7555	ENSG00000116990	GGGGCUUGGGUCCCGGCGCAGGGGACCCGGCCCCCGG
hsa_m5C_2717	chr1	39901273	39901274	-	ENST00000372816	C644	m5C	C28	5'-GGGGCUUGGGUCCCGGCGCAGGGGACCCGGCCCCCGG-3'	((((((.(((((((.......)))))))))))))... (-28.00)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	37	chr1:39901265-39901301	MYCL	HGNC:7555	ENSG00000116990	GGGGCUUGGGUCCCGGCGCAGGGGACCCGGCCCCCGG
hsa_m5C_2718	chr6	42938842	42938843	+	ENST00000372836	C980	m5C	C6	5'-GGAGUCAGGGGCAUGGCUCUGG-3'	(((((((......))))))).. ( -8.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	22	chr6:42938838-42938859	CNPY3	HGNC:11968	ENSG00000137161	GGAGUCAGGGGCAUGGCUCUGG
hsa_m5C_2719	chr10	73782446	73782447	+	ENST00000372837	C278	m5C	C14	5'-GGGCUCAGGUGACCGAUGGCUCCUGG-3'	(((((..((...))...))))).... ( -5.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr10:73782434-73782459	CHCHD1	HGNC:23518	ENSG00000172586	GGGCUCAGGUGACCGAUGGCUCCUGG
hsa_m5C_2720	chr20	44907347	44907348	+	ENST00000372839	C1925	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr20:44907337-44907351	YWHAB	HGNC:12849	ENSG00000166913	GGAGGCUGAGGCAGG
hsa_m5C_2721	chr20	44885814	44885815	+	ENST00000372839	C105	m5C	C3	5'-GGCUUAGGAAGGAAGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	18	chr20:44885813-44885830	YWHAB	HGNC:12849	ENSG00000166913	GGCUUAGGAAGGAAGAGG
hsa_m5C_2722	chr1	39575972	39575973	-	ENST00000372858	C818	m5C	C7	5'-GGGGCUCGGGGUGGUGGGGGGCGGGG-3'	...((((...........)))).... ( -4.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;RNAfold:(High)	RMVar database	28418038	26	chr1:39575954-39575979	PABPC4	HGNC:8557	ENSG00000090621	GGGGCUCGGGGUGGUGGGGGGCGGGG
hsa_m5C_2723	chr1	39575957	39575958	-	ENST00000372858	C833	m5C	C22	5'-GGGGCUCGGGGUGGUGGGGGGCGGGG-3'	...((((...........)))).... ( -4.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	26	chr1:39575954-39575979	PABPC4	HGNC:8557	ENSG00000090621	GGGGCUCGGGGUGGUGGGGGGCGGGG
hsa_m5C_2724	chr20	44724781	44724782	+	ENST00000372868	C665	m5C	C20	5'-GGUGAACGGCCGCCUGUAUCGGGAAGGG-3'	(((.....))).((((...))))..... ( -5.60)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;RMVar database	28418038;31061524;38168991	28	chr20:44724763-44724790	CCN5	HGNC:12770	ENSG00000064205	GGUGAACGGCCGCCUGUAUCGGGAAGGG
hsa_m5C_2725	chr20	44489344	44489345	+	ENST00000372904	C976	m5C	C9	5'-GGGCACGGCUGGGGAGCUGG-3'	.....(((((....))))). ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	20	chr20:44489337-44489356	TTPAL	HGNC:16114	ENSG00000124120	GGGCACGGCUGGGGAGCUGG
hsa_m5C_2726	chr10	73249170	73249171	-	ENST00000372945	C2257	m5C	C6	5'-GGAGGCUGAGGUGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	14	chr10:73249163-73249176	MRPS16	HGNC:14048	ENSG00000182180	GGAGGCUGAGGUGG
hsa_m5C_2727	chr6	42079020	42079021	+	ENST00000372977	C2427	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr6:42079016-42079030	TAF8	HGNC:17300	ENSG00000137413	GGAGGCUGAGGCAGG
hsa_m5C_2728	chr6	42079026	42079027	+	ENST00000372977	C2433	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr6:42079016-42079030	TAF8	HGNC:17300	ENSG00000137413	GGAGGCUGAGGCAGG
hsa_m5C_2729	chr10	73167995	73167996	-	ENST00000372979	C13	m5C	C6	5'-GGUUCCGGUCAGGCGUCGG-3'	....((((.......)))) ( -1.40)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr10:73167983-73168001	ECD	HGNC:17029	ENSG00000122882	GGUUCCGGUCAGGCGUCGG
hsa_m5C_2730	chr20	44159980	44159981	-	ENST00000372980	C1289	m5C	C9	5'-GGGAGAGGCCGCCGAGGGCGCCGACGAGG-3'	......(((.(((...))))))....... ( -8.00)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr20:44159961-44159989	JPH2	HGNC:14202	ENSG00000149596	GGGAGAGGCCGCCGAGGGCGCCGACGAGG
hsa_m5C_2731	chr20	44159979	44159980	-	ENST00000372980	C1290	m5C	C10	5'-GGGAGAGGCCGCCGAGGGCGCCGACGAGG-3'	......(((.(((...))))))....... ( -8.00)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr20:44159961-44159989	JPH2	HGNC:14202	ENSG00000149596	GGGAGAGGCCGCCGAGGGCGCCGACGAGG
hsa_m5C_2732	chr20	44159977	44159978	-	ENST00000372980	C1292	m5C	C12	5'-GGGAGAGGCCGCCGAGGGCGCCGACGAGG-3'	......(((.(((...))))))....... ( -8.00)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr20:44159961-44159989	JPH2	HGNC:14202	ENSG00000149596	GGGAGAGGCCGCCGAGGGCGCCGACGAGG
hsa_m5C_2733	chr20	44159976	44159977	-	ENST00000372980	C1293	m5C	C13	5'-GGGAGAGGCCGCCGAGGGCGCCGACGAGG-3'	......(((.(((...))))))....... ( -8.00)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr20:44159961-44159989	JPH2	HGNC:14202	ENSG00000149596	GGGAGAGGCCGCCGAGGGCGCCGACGAGG
hsa_m5C_2734	chr6	41779823	41779824	-	ENST00000373018	C77	m5C	C30	5'-GGGAGCGGGGCCCGGCGCCGCCCGGGCCGCGGGG-3'	.....((.(((((((......))))))).))... (-20.30)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	34	chr6:41779820-41779853	FRS3	HGNC:16970	ENSG00000137218	GGGAGCGGGGCCCGGCGCCGCCCGGGCCGCGGGG
hsa_m5C_2735	chr1	37807782	37807783	+	ENST00000373043	C805	m5C	C15	5'-GGGCCGGGUCGGGGCGG-3'	..(((.......))).. ( -4.70)	bulge	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	17	chr1:37807769-37807785	C1orf122	HGNC:24789	ENSG00000197982	GGGCCGGGUCGGGGCGG
hsa_m5C_2736	chr1	37808056	37808057	+	ENST00000373043	C1079	m5C	C13	5'-GGGCGCCGGGGGCCGCCGGAGCGGGACUCGGCGGG-3'	...(((((((..((((....))))..))))))).. (-21.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	35	chr1:37808045-37808079	C1orf122	HGNC:24789	ENSG00000197982	GGGCGCCGGGGGCCGCCGGAGCGGGACUCGGCGGG
hsa_m5C_2737	chr1	37569010	37569011	-	ENST00000373062	C1823	m5C	C11	5'-GGAGGAGGAACAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	30526041	14	chr1:37569008-37569021	GNL2	HGNC:29925	ENSG00000134697	GGAGGAGGAACAGG
hsa_m5C_2738	chr1	37574395	37574396	-	ENST00000373062	C1478	m5C	C12	5'-GGCAGAGGGGCCGG-3'	(((......))).. ( -4.40)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	14	chr1:37574394-37574407	GNL2	HGNC:29925	ENSG00000134697	GGCAGAGGGGCCGG
hsa_m5C_2739	chr1	37595925	37595926	-	ENST00000373062	C12	m5C	C4	5'-GGUCCGGCGUGGUUCAGG-3'	((.((.....)).))... ( -0.80)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	18	chr1:37595912-37595929	GNL2	HGNC:29925	ENSG00000134697	GGUCCGGCGUGGUUCAGG
hsa_m5C_2740	chr1	37595924	37595925	-	ENST00000373062	C13	m5C	C5	5'-GGUCCGGCGUGGUUCAGG-3'	((.((.....)).))... ( -0.80)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	18	chr1:37595912-37595929	GNL2	HGNC:29925	ENSG00000134697	GGUCCGGCGUGGUUCAGG
hsa_m5C_2741	chr1	37482460	37482461	+	ENST00000373087	C934	m5C	C3	5'-GGCCGGCACGGGCCCAGCCUGG-3'	(((.(((....)))..)))... ( -8.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr1:37482459-37482480	ZC3H12A	HGNC:26259	ENSG00000163874	GGCCGGCACGGGCCCAGCCUGG
hsa_m5C_2742	chr1	37482470	37482471	+	ENST00000373087	C944	m5C	C13	5'-GGCCGGCACGGGCCCAGCCUGG-3'	(((.(((....)))..)))... ( -8.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr1:37482459-37482480	ZC3H12A	HGNC:26259	ENSG00000163874	GGCCGGCACGGGCCCAGCCUGG
hsa_m5C_2743	chr1	37482471	37482472	+	ENST00000373087	C945	m5C	C14	5'-GGCCGGCACGGGCCCAGCCUGG-3'	(((.(((....)))..)))... ( -8.10)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr1:37482459-37482480	ZC3H12A	HGNC:26259	ENSG00000163874	GGCCGGCACGGGCCCAGCCUGG
hsa_m5C_2744	chr1	37482472	37482473	+	ENST00000373087	C946	m5C	C15	5'-GGCCGGCACGGGCCCAGCCUGG-3'	(((.(((....)))..)))... ( -8.10)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr1:37482459-37482480	ZC3H12A	HGNC:26259	ENSG00000163874	GGCCGGCACGGGCCCAGCCUGG
hsa_m5C_2745	chr10	71964671	71964672	+	ENST00000373115	C278	m5C	C8	5'-GGGGCCGCCGGUGGAGUCUCGGCGGCCGGG^G-3'	..(((((((((.......))))))))).... (-18.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	31	chr10:71964665-71964694;72005736-72005736	CHST3	HGNC:1971	ENSG00000122863	GGGGCCGCCGGUGGAGUCUCGGCGGCCGGGG
hsa_m5C_2746	chr10	72008158	72008159	+	ENST00000373115	C1535	m5C	C25	5'-GGUGCGCUACGAGGACGUGGCACGCGG-3'	.(((.((((((....)))))).))).. (-12.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr10:72008135-72008161	CHST3	HGNC:1971	ENSG00000122863	GGUGCGCUACGAGGACGUGGCACGCGG
hsa_m5C_2747	chr1	36464206	36464207	-	ENST00000373116	C178	m5C	C13	5'-GGUCCUAGUACCCGGGCUGCCGGGCGGUGGG-3'	...((((...(((((....)))))...)))) (-13.70)	loop	mRNA	HeLa,rip antibody: ALYREF;SRV-infected and -uninfected Jurkat	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	30009162;28418038	31	chr1:36464189-36464219	MRPS15	HGNC:14504	ENSG00000116898	GGUCCUAGUACCCGGGCUGCCGGGCGGUGGG
hsa_m5C_2748	chr1	36464194	36464195	-	ENST00000373116	C190	m5C	C25	5'-GGUCCUAGUACCCGGGCUGCCGGGCGGUGGG-3'	...((((...(((((....)))))...)))) (-13.70)	loop	mRNA	HeLa,rip antibody: ALYREF;SRV-infected and -uninfected Jurkat	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	30009162;28418038	31	chr1:36464189-36464219	MRPS15	HGNC:14504	ENSG00000116898	GGUCCUAGUACCCGGGCUGCCGGGCGGUGGG
hsa_m5C_2749	chr10	70816827	70816828	+	ENST00000373202	C197	m5C	C7	5'-GGGGAGCGCGGAGAGGAGGCUGGAAGAGG-3'	....(((...........)))........ ( -2.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	29	chr10:70816822-70816850	SGPL1	HGNC:10817	ENSG00000166224	GGGGAGCGCGGAGAGGAGGCUGGAAGAGG
hsa_m5C_2750	chr10	70816829	70816830	+	ENST00000373202	C199	m5C	C9	5'-GGGGAGCGCGGAGAGGAGGCUGGAAGAGG-3'	....(((...........)))........ ( -2.00)	bulge	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	29	chr10:70816822-70816850	SGPL1	HGNC:10817	ENSG00000166224	GGGGAGCGCGGAGAGGAGGCUGGAAGAGG
hsa_m5C_2751	chr1	35856730	35856731	+	ENST00000373210	C6113	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr1:35856726-35856740	AGO4	HGNC:18424	ENSG00000134698	GGAGGCUGAGGCAGG
hsa_m5C_2752	chr1	35808365	35808366	+	ENST00000373210	C351	m5C	C4	5'-GGGCCCGGAGCGGGAGGCGCCGGGGACCGGGG-3'	((.(((((.((.....)).)))))..)).... (-16.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	32	chr1:35808363-35808394	AGO4	HGNC:18424	ENSG00000134698	GGGCCCGGAGCGGGAGGCGCCGGGGACCGGGG
hsa_m5C_2753	chr1	35808366	35808367	+	ENST00000373210	C352	m5C	C5	5'-GGGCCCGGAGCGGGAGGCGCCGGGGACCGGGG-3'	((.(((((.((.....)).)))))..)).... (-16.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	32	chr1:35808363-35808394	AGO4	HGNC:18424	ENSG00000134698	GGGCCCGGAGCGGGAGGCGCCGGGGACCGGGG
hsa_m5C_2754	chr1	35808367	35808368	+	ENST00000373210	C353	m5C	C6	5'-GGGCCCGGAGCGGGAGGCGCCGGGGACCGGGG-3'	((.(((((.((.....)).)))))..)).... (-16.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	32	chr1:35808363-35808394	AGO4	HGNC:18424	ENSG00000134698	GGGCCCGGAGCGGGAGGCGCCGGGGACCGGGG
hsa_m5C_2755	chr20	41533196	41533197	-	ENST00000373233	C468	m5C	C12	5'-GGCCAAGGAGCCGAAGAAGGCCAAGG-3'	((((..............)))).... ( -6.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr20:41533183-41533208	CHD6	HGNC:19057	ENSG00000124177	GGCCAAGGAGCCGAAGAAGGCCAAGG
hsa_m5C_2756	chr20	41405257	41405258	-	ENST00000373233	C7544	m5C	C3	5'-GGCUGGUGGGG-3'	NA	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	11	chr20:41405250-41405260	CHD6	HGNC:19057	ENSG00000124177	GGCUGGUGGGG
hsa_m5C_2757	chr1	35602590	35602591	-	ENST00000373237	C1376	m5C	C28	5'-GGCUGAGACAGGAGAAUCGGUCGAACCCGG-3'	((((((..........))))))........ ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr1:35602589-35602618	PSMB2	HGNC:9539	ENSG00000126067	GGCUGAGACAGGAGAAUCGGUCGAACCCGG
hsa_m5C_2758	chr1	35602747	35602748	-	ENST00000373237	C1219	m5C	C8	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr1:35602741-35602755	PSMB2	HGNC:9539	ENSG00000126067	GGGAGGCCGAGGCGG
hsa_m5C_2759	chr1	35602742	35602743	-	ENST00000373237	C1224	m5C	C13	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr1:35602741-35602755	PSMB2	HGNC:9539	ENSG00000126067	GGGAGGCCGAGGCGG
hsa_m5C_2760	chr20	41349161	41349162	+	ENST00000373257	C818	m5C	C17	5'-GGAUGGCGAGUGGCCCCCCCAGG-3'	((..(((.....)))..)).... ( -6.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr20:41349146-41349168	LPIN3	HGNC:14451	ENSG00000132793	GGAUGGCGAGUGGCCCCCCCAGG
hsa_m5C_2761	chr20	41349875	41349876	+	ENST00000373257	C931	m5C	C5	5'-GGGCCUGGGGGAGG-3'	...(((.....))) ( -1.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	14	chr20:41349872-41349885	LPIN3	HGNC:14451	ENSG00000132793	GGGCCUGGGGGAGG
hsa_m5C_2762	chr20	41175306	41175307	+	ENST00000373271	C5076	m5C	C12	5'-GGGGGGCGGGCCAGGG-3'	((........)).... ( -1.70)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMBase database;m6A-Atlas database	28418038	16	chr20:41175296-41175311	PLCG1	HGNC:9065	ENSG00000124181	GGGGGGCGGGCCAGGG
hsa_m5C_2763	chr9	127568989	127568990	-	ENST00000373312	C84	m5C	C15	5'-GGGAGCGGCGGGAGCGGCGGGAGCGGGGG-3'	....((.((....)).))........... ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;RMVar database	28418038	29	chr9:127568976-127569004	NIBAN2	HGNC:25282	ENSG00000136830	GGGAGCGGCGGGAGCGGCGGGAGCGGGGG
hsa_m5C_2764	chr9	127505915	127505916	-	ENST00000373312	C3369	m5C	C8	5'-GGGGAGCCGGACGGGGCUCCUGAGGGGUACAGGUUGG-3'	.(((((((......)))))))................ (-13.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	37	chr9:127505887-127505923	NIBAN2	HGNC:25282	ENSG00000136830	GGGGAGCCGGACGGGGCUCCUGAGGGGUACAGGUUGG
hsa_m5C_2765	chr6	38703024	38703025	-	ENST00000373365	C121	m5C	C6	5'-GGCGGCCUCACGGACGAGG-3'	.....((((......)))) ( -4.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr6:38703012-38703030	GLO1	HGNC:4323	ENSG00000124767	GGCGGCCUCACGGACGAGG
hsa_m5C_2766	chr6	38703023	38703024	-	ENST00000373365	C122	m5C	C7	5'-GGCGGCCUCACGGACGAGG-3'	.....((((......)))) ( -4.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr6:38703012-38703030	GLO1	HGNC:4323	ENSG00000124767	GGCGGCCUCACGGACGAGG
hsa_m5C_2767	chr6	38703021	38703022	-	ENST00000373365	C124	m5C	C9	5'-GGCGGCCUCACGGACGAGG-3'	.....((((......)))) ( -4.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr6:38703012-38703030	GLO1	HGNC:4323	ENSG00000124767	GGCGGCCUCACGGACGAGG
hsa_m5C_2768	chr9	127397924	127397925	+	ENST00000373371	C302	m5C	C23	5'-GG^GCUGUCGUGACCCUGGGUGCCGCGGCGGGGGGAGUGCUGGG-3'	...(((((((((((...)))..))))))))............. (-12.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	43	chr9:127397537-127397538;127397905-127397945	SLC2A8	HGNC:13812	ENSG00000136856	GGGCUGUCGUGACCCUGGGUGCCGCGGCGGGGGGAGUGCUGGG
hsa_m5C_2769	chr9	127397926	127397927	+	ENST00000373371	C304	m5C	C25	5'-GG^GCUGUCGUGACCCUGGGUGCCGCGGCGGGGGGAGUGCUGGG-3'	...(((((((((((...)))..))))))))............. (-12.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	43	chr9:127397537-127397538;127397905-127397945	SLC2A8	HGNC:13812	ENSG00000136856	GGGCUGUCGUGACCCUGGGUGCCGCGGCGGGGGGAGUGCUGGG
hsa_m5C_2770	chr1	33430473	33430474	-	ENST00000373422	C173	m5C	C27	5'-GGUGAGACCCGGGCGUCGGGCCUGACCGGG-3'	(((.((.((((.....)))).)).)))... (-14.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr1:33430471-33430500	PHC2	HGNC:3183	ENSG00000134686	GGUGAGACCCGGGCGUCGGGCCUGACCGGG
hsa_m5C_2771	chr1	32333282	32333283	+	ENST00000373548	C1775	m5C	C11	5'-GGUGCCAGGUCUGGGUGAAAGG-3'	....(((....)))........ ( -1.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr1:32333273-32333294	HDAC1	HGNC:4852	ENSG00000116478	GGUGCCAGGUCUGGGUGAAAGG
hsa_m5C_2772	chr1	32175713	32175714	+	ENST00000373625	C6506	m5C	C6	5'-GGAGGCGGAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	11	chr1:32175709-32175719	KPNA6	HGNC:6399	ENSG00000025800	GGAGGCGGAGG
hsa_m5C_2773	chr1	32175411	32175412	+	ENST00000373625	C6204	m5C	C4	5'-GGCCUGGGGGGCAUUGAAGG-3'	.((((...))))........ ( -4.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	20	chr1:32175409-32175428	KPNA6	HGNC:6399	ENSG00000025800	GGCCUGGGGGGCAUUGAAGG
hsa_m5C_2774	chr1	32175642	32175643	+	ENST00000373625	C6435	m5C	C3	5'-GGCGUGGUGGCAGG-3'	.((......))... ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	14	chr1:32175641-32175654	KPNA6	HGNC:6399	ENSG00000025800	GGCGUGGUGGCAGG
hsa_m5C_2775	chr9	122941067	122941068	+	ENST00000373647	C49	m5C	C3	5'-GGCGGCGGAGG-3'	NA	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	11	chr9:122941066-122941076	RABGAP1	HGNC:17155	ENSG00000011454	GGCGGCGGAGG
hsa_m5C_2776	chr1	31739566	31739567	-	ENST00000373658	C2883	m5C	C8	5'-GGGCCGCCGGGGCAUGAAGGACUGGG-3'	..(((.....)))............. ( -4.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	26	chr1:31739549-31739574	ADGRB2	HGNC:944	ENSG00000121753	GGGCCGCCGGGGCAUGAAGGACUGGG
hsa_m5C_2777	chr9	122848023	122848024	-	ENST00000373670	C5780	m5C	C5	5'-GGGGCGGGAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	11	chr9:122848018-122848028	RC3H2	HGNC:21461	ENSG00000056586	GGGGCGGGAGG
hsa_m5C_2778	chr1	31693138	31693139	-	ENST00000373672	C1239	m5C	C17	5'-G^GGAGGGAAAGGUGAGCGGGG-3'	NA	bulge	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	21	chr1:31693135-31693154;31694144-31694144	COL16A1	HGNC:2193	ENSG00000084636	GGGAGGGAAAGGUGAGCGGGG
hsa_m5C_2779	chr1	31668803	31668804	-	ENST00000373672	C3462	m5C	C8	5'-GGGGGAGCCG^GGUCCUCCAGGG-3'	((((((......)))))).... (-10.00)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	22	chr1:31668207-31668218;31668802-31668811	COL16A1	HGNC:2193	ENSG00000084636	GGGGGAGCCGGGUCCUCCAGGG
hsa_m5C_2780	chr10	62805475	62805476	+	ENST00000373783	C757	m5C	C4	5'-GGGCGGCGGGCAACGGCCGCGGG-3'	..(((((........)))))... (-11.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	23	chr10:62805473-62805495	ADO	HGNC:23506	ENSG00000181915	GGGCGGCGGGCAACGGCCGCGGG
hsa_m5C_2781	chr10	62805478	62805479	+	ENST00000373783	C760	m5C	C7	5'-GGGCGGCGGGCAACGGCCGCGGG-3'	..(((((........)))))... (-11.00)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038;22344696	23	chr10:62805473-62805495	ADO	HGNC:23506	ENSG00000181915	GGGCGGCGGGCAACGGCCGCGGG
hsa_m5C_2782	chr1	29148574	29148575	-	ENST00000373795	C1468	m5C	C18	5'-GGCACCAAUCAGGAGACCCGGUCCAGG-3'	((.(((.....((....)))))))... ( -4.30)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	27	chr1:29148566-29148592	SRSF4	HGNC:10786	ENSG00000116350	GGCACCAAUCAGGAGACCCGGUCCAGG
hsa_m5C_2783	chr1	29148573	29148574	-	ENST00000373795	C1469	m5C	C19	5'-GGCACCAAUCAGGAGACCCGGUCCAGG-3'	((.(((.....((....)))))))... ( -4.30)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	27	chr1:29148566-29148592	SRSF4	HGNC:10786	ENSG00000116350	GGCACCAAUCAGGAGACCCGGUCCAGG
hsa_m5C_2784	chr1	28715500	28715501	+	ENST00000373816	C2506	m5C	C6	5'-GGAGGCCAAGGCAGG-3'	....((....))... ( -1.50)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr1:28715496-28715510	GMEB1	HGNC:4370	ENSG00000162419	GGAGGCCAAGGCAGG
hsa_m5C_2785	chr1	28715997	28715998	+	ENST00000373816	C3003	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr1:28715993-28716007	GMEB1	HGNC:4370	ENSG00000162419	GGAGGCUGAGGCAGG
hsa_m5C_2786	chr1	28716003	28716004	+	ENST00000373816	C3009	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr1:28715993-28716007	GMEB1	HGNC:4370	ENSG00000162419	GGAGGCUGAGGCAGG
hsa_m5C_2787	chr1	28715818	28715819	+	ENST00000373816	C2824	m5C	C10	5'-GGCCGGGUGCGGUGG-3'	.((((....)))).. ( -5.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr1:28715810-28715824	GMEB1	HGNC:4370	ENSG00000162419	GGCCGGGUGCGGUGG
hsa_m5C_2788	chr1	28715362	28715363	+	ENST00000373816	C2368	m5C	C7	5'-GGGAGGCCGAGGCGGGUGG-3'	.....(((......))).. ( -3.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	19	chr1:28715357-28715375	GMEB1	HGNC:4370	ENSG00000162419	GGGAGGCCGAGGCGGGUGG
hsa_m5C_2789	chr1	28715363	28715364	+	ENST00000373816	C2369	m5C	C8	5'-GGGAGGCCGAGGCGGGUGG-3'	.....(((......))).. ( -3.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	19	chr1:28715357-28715375	GMEB1	HGNC:4370	ENSG00000162419	GGGAGGCCGAGGCGGGUGG
hsa_m5C_2790	chr1	28715368	28715369	+	ENST00000373816	C2374	m5C	C13	5'-GGGAGGCCGAGGCGGGUGG-3'	.....(((......))).. ( -3.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	19	chr1:28715357-28715375	GMEB1	HGNC:4370	ENSG00000162419	GGGAGGCCGAGGCGGGUGG
hsa_m5C_2791	chr1	28715469	28715470	+	ENST00000373816	C2475	m5C	C11	5'-GGUGUGGUGGCGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	13	chr1:28715460-28715472	GMEB1	HGNC:4370	ENSG00000162419	GGUGUGGUGGCGG
hsa_m5C_2792	chr1	28516858	28516859	+	ENST00000373833	C268	m5C	C16	5'-GGAGGCAGAGGUAAACUUGG-3'	.......(((.....))).. ( -0.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr1:28516844-28516863	RCC1	HGNC:1913	ENSG00000180198	GGAGGCAGAGGUAAACUUGG
hsa_m5C_2793	chr1	28335586	28335587	+	ENST00000373842	C1451	m5C	C6	5'-GGAGGCUGAGGUAGG-3'	NA	loop	mRNA	SRV-infected and -uninfected Jurkat	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	30009162	15	chr1:28335582-28335596	MED18	HGNC:25944	ENSG00000130772	GGAGGCUGAGGUAGG
hsa_m5C_2794	chr9	120856117	120856118	-	ENST00000373896	C3682	m5C	C4	5'-GGCCAACUAGGGCCAGGUGGAAGGGG-3'	((((......))))............ ( -7.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	26	chr9:120856096-120856121	PHF19	HGNC:24566	ENSG00000119403	GGCCAACUAGGGCCAGGUGGAAGGGG
hsa_m5C_2795	chr9	120856114	120856115	-	ENST00000373896	C3685	m5C	C7	5'-GGCCAACUAGGGCCAGGUGGAAGGGG-3'	((((......))))............ ( -7.70)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	26	chr9:120856096-120856121	PHF19	HGNC:24566	ENSG00000119403	GGCCAACUAGGGCCAGGUGGAAGGGG
hsa_m5C_2796	chr9	120602127	120602128	-	ENST00000373930	C4983	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr9:120602119-120602133	MEGF9	HGNC:3234	ENSG00000106780	GGAGGCUGAGGCAGG
hsa_m5C_2797	chr1	27773346	27773347	+	ENST00000373943	C129	m5C	C12	5'-GGAACCCGGGGCCCUCGG-3'	.....(((((...))))) ( -4.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	18	chr1:27773336-27773353	STX12	HGNC:11430	ENSG00000117758	GGAACCCGGGGCCCUCGG
hsa_m5C_2798	chr1	27773347	27773348	+	ENST00000373943	C130	m5C	C13	5'-GGAACCCGGGGCCCUCGG-3'	.....(((((...))))) ( -4.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	18	chr1:27773336-27773353	STX12	HGNC:11430	ENSG00000117758	GGAACCCGGGGCCCUCGG
hsa_m5C_2799	chr1	27773253	27773254	+	ENST00000373943	C36	m5C	C13	5'-GGUCCCGGCUGGCGG-3'	....(((.....))) ( -2.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr1:27773242-27773256	STX12	HGNC:11430	ENSG00000117758	GGUCCCGGCUGGCGG
hsa_m5C_2800	chr20	35953786	35953787	-	ENST00000373991	C1569	m5C	C13	5'-GGCGGCUCGGGCCCGG-3'	(((.......)))... ( -3.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr20:35953784-35953799	SCAND1	HGNC:10566	ENSG00000171222	GGCGGCUCGGGCCCGG
hsa_m5C_2801	chr20	35953785	35953786	-	ENST00000373991	C1570	m5C	C14	5'-GGCGGCUCGGGCCCGG-3'	(((.......)))... ( -3.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr20:35953784-35953799	SCAND1	HGNC:10566	ENSG00000171222	GGCGGCUCGGGCCCGG
hsa_m5C_2802	chr20	35953694	35953695	-	ENST00000373991	C1661	m5C	C5	5'-GGGGCCAUGAUCGGGCCCGGGGGCCUGAGCCUGGG-3'	.((((.....(((((((....)))))))))))... (-15.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	35	chr20:35953665-35953699	SCAND1	HGNC:10566	ENSG00000171222	GGGGCCAUGAUCGGGCCCGGGGGCCUGAGCCUGGG
hsa_m5C_2803	chr20	35953693	35953694	-	ENST00000373991	C1662	m5C	C6	5'-GGGGCCAUGAUCGGGCCCGGGGGCCUGAGCCUGGG-3'	.((((.....(((((((....)))))))))))... (-15.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	35	chr20:35953665-35953699	SCAND1	HGNC:10566	ENSG00000171222	GGGGCCAUGAUCGGGCCCGGGGGCCUGAGCCUGGG
hsa_m5C_2804	chr20	35953683	35953684	-	ENST00000373991	C1672	m5C	C16	5'-GGGGCCAUGAUCGGGCCCGGGGGCCUGAGCCUGGG-3'	.((((.....(((((((....)))))))))))... (-15.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	35	chr20:35953665-35953699	SCAND1	HGNC:10566	ENSG00000171222	GGGGCCAUGAUCGGGCCCGGGGGCCUGAGCCUGGG
hsa_m5C_2805	chr20	35953682	35953683	-	ENST00000373991	C1673	m5C	C17	5'-GGGGCCAUGAUCGGGCCCGGGGGCCUGAGCCUGGG-3'	.((((.....(((((((....)))))))))))... (-15.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	35	chr20:35953665-35953699	SCAND1	HGNC:10566	ENSG00000171222	GGGGCCAUGAUCGGGCCCGGGGGCCUGAGCCUGGG
hsa_m5C_2806	chr20	35953681	35953682	-	ENST00000373991	C1674	m5C	C18	5'-GGGGCCAUGAUCGGGCCCGGGGGCCUGAGCCUGGG-3'	.((((.....(((((((....)))))))))))... (-15.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	35	chr20:35953665-35953699	SCAND1	HGNC:10566	ENSG00000171222	GGGGCCAUGAUCGGGCCCGGGGGCCUGAGCCUGGG
hsa_m5C_2807	chrX	71252964	71252965	-	ENST00000373998	C989	m5C	C13	5'-GGAGGUGGACCACGG-3'	....(((...))).. ( -0.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chrX:71252963-71252977	ZMYM3	HGNC:13054	ENSG00000147130	GGAGGUGGACCACGG
hsa_m5C_2808	chr20	35949920	35949921	+	ENST00000374012	C5430	m5C	C11	5'-GGCGUGGUGGCGG-3'	.((......)).. ( -2.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	13	chr20:35949911-35949923	PHF20	HGNC:16098	ENSG00000025293	GGCGUGGUGGCGG
hsa_m5C_2809	chr6	34587955	34587956	-	ENST00000374023	C3670	m5C	C3	5'-GGCAGGCCACCUCUGGGCAGG-3'	.....(((.......)))... ( -3.50)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr6:34587938-34587958	ILRUN	HGNC:21215	ENSG00000196821	GGCAGGCCACCUCUGGGCAGG
hsa_m5C_2810	chr20	35699285	35699286	+	ENST00000374078	C15	m5C	C13	5'-GGCUCGGAGCAGCAUGGUCCCGCUGG-3'	(((..(((.((...)).))).))).. ( -6.70)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr20:35699274-35699299	ROMO1	HGNC:16185	ENSG00000125995	GGCUCGGAGCAGCAUGGUCCCGCUGG
hsa_m5C_2811	chr20	35699332	35699333	-	ENST00000374092	C20	m5C	C14	5'-GGGAGCCUGGGGCCCAGGACUGCAGCGG-3'	...(((((((...))))).))....... ( -7.80)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	28	chr20:35699319-35699346	NFS1	HGNC:15910	ENSG00000244005	GGGAGCCUGGGGCCCAGGACUGCAGCGG
hsa_m5C_2812	chr20	35699331	35699332	-	ENST00000374092	C21	m5C	C15	5'-GGGAGCCUGGGGCCCAGGACUGCAGCGG-3'	...(((((((...))))).))....... ( -7.80)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	28	chr20:35699319-35699346	NFS1	HGNC:15910	ENSG00000244005	GGGAGCCUGGGGCCCAGGACUGCAGCGG
hsa_m5C_2813	chr20	35655274	35655275	-	ENST00000374114	C296	m5C	C10	5'-GGCGGGGACCAUGG-3'	((......)).... ( -0.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	14	chr20:35655271-35655284	RBM12	HGNC:9898	ENSG00000244462	GGCGGGGACCAUGG
hsa_m5C_2814	chr9	113876399	113876400	+	ENST00000374126	C92	m5C	C8	5'-GGCGGCGCGGCGG-3'	.((......)).. ( -2.00)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	13	chr9:113876393-113876405	ZNF618	HGNC:29416	ENSG00000157657	GGCGGCGCGGCGG
hsa_m5C_2815	chr1	26876470	26876471	-	ENST00000374135	C4326	m5C	C6	5'-GGAGGCCAAGGCGG-3'	....((....)).. ( -1.70)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	14	chr1:26876463-26876476	GPN2	HGNC:25513	ENSG00000142751	GGAGGCCAAGGCGG
hsa_m5C_2816	chr1	26876469	26876470	-	ENST00000374135	C4327	m5C	C7	5'-GGAGGCCAAGGCGG-3'	....((....)).. ( -1.70)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	14	chr1:26876463-26876476	GPN2	HGNC:25513	ENSG00000142751	GGAGGCCAAGGCGG
hsa_m5C_2817	chr9	112041487	112041488	-	ENST00000374270	C2310	m5C	C11	5'-GGUGUG^AUGGCAGAUGG-3'	..(((....)))..... ( -0.40)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr9:112041482-112041492;112041867-112041872	SUSD1	HGNC:25413	ENSG00000106868	GGUGUGAUGGCAGAUGG
hsa_m5C_2818	chr1	26039907	26039908	-	ENST00000374276	C1064	m5C	C18	5'-GGUGUUGAUGGAAG^GGACCCCCAAGG-3'	.............(((...))).... ( -2.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr1:26039900-26039911;26041700-26041713	SLC30A2	HGNC:11013	ENSG00000158014	GGUGUUGAUGGAAGGGACCCCCAAGG
hsa_m5C_2819	chr1	26039906	26039907	-	ENST00000374276	C1065	m5C	C19	5'-GGUGUUGAUGGAAG^GGACCCCCAAGG-3'	.............(((...))).... ( -2.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr1:26039900-26039911;26041700-26041713	SLC30A2	HGNC:11013	ENSG00000158014	GGUGUUGAUGGAAGGGACCCCCAAGG
hsa_m5C_2820	chr9	111896946	111896947	+	ENST00000374279	C134	m5C	C20	5'-GGCGAACCGGAGCGCGGGACCGCGG-3'	.(((..(((.....)))...))).. ( -8.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	25	chr9:111896928-111896952	UGCG	HGNC:12524	ENSG00000148154	GGCGAACCGGAGCGCGGGACCGCGG
hsa_m5C_2821	chr10	45672464	45672465	-	ENST00000374366	C268	m5C	C13	5'-GGACCGGAGCGGCGGG-3'	...(((......))). ( -4.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr10:45672462-45672477	ZFAND4	HGNC:23504	ENSG00000172671	GGACCGGAGCGGCGGG
hsa_m5C_2822	chr20	35279161	35279162	-	ENST00000374436	C1001	m5C	C12	5'-GGCUCCUGGCUCUGGACUGUGG-3'	((.(((.......))))).... ( -2.50)	loop	mRNA	293T;HeLa,rip antibody: ALYREF;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	38168991;RMVar database	28418038;38168991	22	chr20:35279152-35279173	EIF6	HGNC:6159	ENSG00000242372	GGCUCCUGGCUCUGGACUGUGG
hsa_m5C_2823	chr1	23808254	23808255	-	ENST00000374490	C644	m5C	C22	5'-GGACACCAUUGGUGUGGGCACCCCAGGG-3'	..(((((...)))))(((...))).... ( -7.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr1:23808249-23808276	HMGCL	HGNC:5005	ENSG00000117305	GGACACCAUUGGUGUGGGCACCCCAGGG
hsa_m5C_2824	chr1	23559345	23559346	-	ENST00000374561	C156	m5C	C4	5'-GGGCCGAGGGAAGGGCCCGGCAG-3'	(((((........)))))..... (-11.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	23	chr1:23559327-23559349	ID3	HGNC:5362	ENSG00000117318	GGGCCGAGGGAAGGGCCCGGCAG
hsa_m5C_2825	chr1	23559344	23559345	-	ENST00000374561	C157	m5C	C5	5'-GGGCCGAGGGAAGGGCCCGGCAG-3'	(((((........)))))..... (-11.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	23	chr1:23559327-23559349	ID3	HGNC:5362	ENSG00000117318	GGGCCGAGGGAAGGGCCCGGCAG
hsa_m5C_2826	chr9	109320645	109320646	-	ENST00000374566	C414	m5C	C10	5'-GGCGCUGGCCGGGCCGG-3'	(((....)))....... ( -5.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr9:109320639-109320655	EPB41L4B	HGNC:19818	ENSG00000095203	GGCGCUGGCCGGGCCGG
hsa_m5C_2827	chr9	109320640	109320641	-	ENST00000374566	C419	m5C	C15	5'-GGCGCUGGCCGGGCCGG-3'	(((....)))....... ( -5.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr9:109320639-109320655	EPB41L4B	HGNC:19818	ENSG00000095203	GGCGCUGGCCGGGCCGG
hsa_m5C_2828	chr9	109320257	109320258	-	ENST00000374566	C802	m5C	C10	5'-GGCGGGCGGCGG-3'	.((.....)).. ( -1.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	12	chr9:109320256-109320267	EPB41L4B	HGNC:19818	ENSG00000095203	GGCGGGCGGCGG
hsa_m5C_2829	chr9	109320933	109320934	-	ENST00000374566	C126	m5C	C11	5'-GGGCGCUCGGCGGGGCCUCCUCGGGCCCCGGG-3'	..........((((((((....)))))))).. (-17.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	32	chr9:109320913-109320944	EPB41L4B	HGNC:19818	ENSG00000095203	GGGCGCUCGGCGGGGCCUCCUCGGGCCCCGGG
hsa_m5C_2830	chr9	109320531	109320532	-	ENST00000374566	C528	m5C	C28	5'-GGGCGGCCGAGGGCACUGACGGCGUCGCGGGACGCUCCCGGG-3'	.((((.(((((....))..))))))).(((((...))))).. (-15.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	42	chr9:109320518-109320559	EPB41L4B	HGNC:19818	ENSG00000095203	GGGCGGCCGAGGGCACUGACGGCGUCGCGGGACGCUCCCGGG
hsa_m5C_2831	chr2	202556341	202556342	+	ENST00000374580	C3825	m5C	C14	5'-GGACAGGAGGGAACGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr2:202556329-202556344	BMPR2	HGNC:1078	ENSG00000204217	GGACAGGAGGGAACGG
hsa_m5C_2832	chr2	202376519	202376520	+	ENST00000374580	C194	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;RMVar database	28418038	11	chr2:202376512-202376522	BMPR2	HGNC:1078	ENSG00000204217	GGCGGCGGCGG
hsa_m5C_2833	chr6	33193749	33193750	-	ENST00000374680	C2723	m5C	C3	5'-GGCUGGGGACACAGG-3'	..(((......))). ( -2.70)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr6:33193738-33193752	RXRB	HGNC:10478	ENSG00000204231	GGCUGGGGACACAGG
hsa_m5C_2834	chr10	35336936	35336937	+	ENST00000374704	C429	m5C	C3	5'-GGCGGCGAGCGGGCGGG-3'	....((......))... ( -2.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	17	chr10:35336935-35336951	CCNY	HGNC:23354	ENSG00000108100	GGCGGCGAGCGGGCGGG
hsa_m5C_2835	chr10	35336939	35336940	+	ENST00000374704	C432	m5C	C6	5'-GGCGGCGAGCGGGCGGG-3'	....((......))... ( -2.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	17	chr10:35336935-35336951	CCNY	HGNC:23354	ENSG00000108100	GGCGGCGAGCGGGCGGG
hsa_m5C_2836	chr10	35336943	35336944	+	ENST00000374704	C436	m5C	C10	5'-GGCGGCGAGCGGGCGGG-3'	....((......))... ( -2.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	17	chr10:35336935-35336951	CCNY	HGNC:23354	ENSG00000108100	GGCGGCGAGCGGGCGGG
hsa_m5C_2837	chr10	35336947	35336948	+	ENST00000374704	C440	m5C	C14	5'-GGCGGCGAGCGGGCGGG-3'	....((......))... ( -2.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	17	chr10:35336935-35336951	CCNY	HGNC:23354	ENSG00000108100	GGCGGCGAGCGGGCGGG
hsa_m5C_2838	chr17	81563192	81563193	-	ENST00000374747	C4111	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr17:81563184-81563198	NPLOC4	HGNC:18261	ENSG00000182446	GGAGGCUGAGGCAGG
hsa_m5C_2839	chr17	81563186	81563187	-	ENST00000374747	C4117	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr17:81563184-81563198	NPLOC4	HGNC:18261	ENSG00000182446	GGAGGCUGAGGCAGG
hsa_m5C_2840	chr17	81280676	81280677	-	ENST00000374759	C944	m5C	C21	5'-GGGCAGUGGCUGCGGCGGGUCAGCUACGUCCGCUGGGAGGG-3'	((((.(((((((........))))))))))).......... (-15.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	41	chr17:81280657-81280697	SLC38A10	HGNC:28237	ENSG00000157637	GGGCAGUGGCUGCGGCGGGUCAGCUACGUCCGCUGGGAGGG
hsa_m5C_2841	chrX	65524122	65524123	-	ENST00000374811	C1305	m5C	C7	5'-GGGGAUCAGCGGGAUCCGG-3'	..(((((.....))))).. ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	19	chrX:65524111-65524129	LAS1L	HGNC:25726	ENSG00000001497	GGGGAUCAGCGGGAUCCGG
hsa_m5C_2842	chr20	34440295	34440296	+	ENST00000374864	C996	m5C	C8	5'-GGAGGCUCAGGCCCUAGG-3'	((.(((....)))))... ( -4.80)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	18	chr20:34440289-34440306	ITCH	HGNC:13890	ENSG00000078747	GGAGGCUCAGGCCCUAGG
hsa_m5C_2843	chrX	64191447	64191448	-	ENST00000374869	C2076	m5C	C4	5'-GGCCCACACUUGGGAAGCUCAUGGCAGGG-3'	..((((....))))..(((...))).... ( -5.70)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chrX:64191423-64191451	AMER1	HGNC:26837	ENSG00000184675	GGCCCACACUUGGGAAGCUCAUGGCAGGG
hsa_m5C_2844	chrX	57488832	57488833	+	ENST00000374900	C1620	m5C	C6	5'-GGCAUCCAGGUUGUGGCUGG-3'	.....((((.......)))) ( -3.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chrX:57488828-57488847	FAAH2	HGNC:26440	ENSG00000165591	GGCAUCCAGGUUGUGGCUGG
hsa_m5C_2845	chrX	55003032	55003033	+	ENST00000374987	C554	m5C	C15	5'-GGACCCUGGGAGGCCUGAGCGG-3'	...((((.((....)).)).)) ( -4.10)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chrX:55003019-55003040	APEX2	HGNC:17889	ENSG00000169188	GGACCCUGGGAGGCCUGAGCGG
hsa_m5C_2846	chr1	20485699	20485700	-	ENST00000375078	C511	m5C	C7	5'-GGCUCGCGGCCCCGCCCGGCCCGG-3'	(((.((.(((...))))))))... (-10.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	24	chr1:20485683-20485706	CAMK2N1	HGNC:24190	ENSG00000162545	GGCUCGCGGCCCCGCCCGGCCCGG
hsa_m5C_2847	chr9	97854719	97854720	+	ENST00000375123	C1495	m5C	C5	5'-GGGGCCCGGCCGG-3'	..(((...))).. ( -2.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	13	chr9:97854716-97854728	FOXE1	HGNC:3806	ENSG00000178919	GGGGCCCGGCCGG
hsa_m5C_2848	chr9	97854720	97854721	+	ENST00000375123	C1496	m5C	C6	5'-GGGGCCCGGCCGG-3'	..(((...))).. ( -2.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	13	chr9:97854716-97854728	FOXE1	HGNC:3806	ENSG00000178919	GGGGCCCGGCCGG
hsa_m5C_2849	chrX	54495593	54495594	-	ENST00000375135	C641	m5C	C6	5'-GGGCCCGGGCUGGGGGCUUGAGUCUCUGCAGUGGG-3'	...((((.((.((((((....))))))))..)))) (-12.40)	loop	mRNA	293T	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	35	chrX:54495565-54495599	FGD1	HGNC:3663	ENSG00000102302	GGGCCCGGGCUGGGGGCUUGAGUCUCUGCAGUGGG
hsa_m5C_2850	chrX	54495690	54495691	-	ENST00000375135	C544	m5C	C5	5'-GGGGCCGGGGCCGGGGCCGG-3'	..((((........)))).. ( -8.50)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	20	chrX:54495676-54495695	FGD1	HGNC:3663	ENSG00000102302	GGGGCCGGGGCCGGGGCCGG
hsa_m5C_2851	chrX	54495689	54495690	-	ENST00000375135	C545	m5C	C6	5'-GGGGCCGGGGCCGGGGCCGG-3'	..((((........)))).. ( -8.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	20	chrX:54495676-54495695	FGD1	HGNC:3663	ENSG00000102302	GGGGCCGGGGCCGGGGCCGG
hsa_m5C_2852	chrX	54495684	54495685	-	ENST00000375135	C550	m5C	C11	5'-GGGGCCGGGGCCGGGGCCGG-3'	..((((........)))).. ( -8.50)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	20	chrX:54495676-54495695	FGD1	HGNC:3663	ENSG00000102302	GGGGCCGGGGCCGGGGCCGG
hsa_m5C_2853	chrX	54495683	54495684	-	ENST00000375135	C551	m5C	C12	5'-GGGGCCGGGGCCGGGGCCGG-3'	..((((........)))).. ( -8.50)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	20	chrX:54495676-54495695	FGD1	HGNC:3663	ENSG00000102302	GGGGCCGGGGCCGGGGCCGG
hsa_m5C_2854	chr9	96619452	96619453	-	ENST00000375241	C391	m5C	C5	5'-GGGGCUGGCGGGAGCCUCGGCGGGCGCGCGGG-3'	((((((......)))))).(((....)))... (-14.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	32	chr9:96619426-96619457	CDC14B	HGNC:1719	ENSG00000081377	GGGGCUGGCGGGAGCCUCGGCGGGCGCGCGGG
hsa_m5C_2855	chr9	96619448	96619449	-	ENST00000375241	C395	m5C	C9	5'-GGGGCUGGCGGGAGCCUCGGCGGGCGCGCGGG-3'	((((((......)))))).(((....)))... (-14.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	32	chr9:96619426-96619457	CDC14B	HGNC:1719	ENSG00000081377	GGGGCUGGCGGGAGCCUCGGCGGGCGCGCGGG
hsa_m5C_2856	chr9	96619432	96619433	-	ENST00000375241	C411	m5C	C25	5'-GGGGCUGGCGGGAGCCUCGGCGGGCGCGCGGG-3'	((((((......)))))).(((....)))... (-14.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	32	chr9:96619426-96619457	CDC14B	HGNC:1719	ENSG00000081377	GGGGCUGGCGGGAGCCUCGGCGGGCGCGCGGG
hsa_m5C_2857	chr9	96619430	96619431	-	ENST00000375241	C413	m5C	C27	5'-GGGGCUGGCGGGAGCCUCGGCGGGCGCGCGGG-3'	((((((......)))))).(((....)))... (-14.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	32	chr9:96619426-96619457	CDC14B	HGNC:1719	ENSG00000081377	GGGGCUGGCGGGAGCCUCGGCGGGCGCGCGGG
hsa_m5C_2858	chr9	96417707	96417708	-	ENST00000375256	C663	m5C	C14	5'-GGGGCUUCGUGGCCGG-3'	..((((....)))).. ( -5.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr9:96417706-96417721	ZNF367	HGNC:18320	ENSG00000165244	GGGGCUUCGUGGCCGG
hsa_m5C_2859	chr9	94928448	94928449	+	ENST00000375315	C1767	m5C	C11	5'-GGCCCGGGAGCAGCAGGAGCUGAGG-3'	..........((((....))))... ( -4.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr9:94928439-94928463	AOPEP	HGNC:1361	ENSG00000148120	GGCCCGGGAGCAGCAGGAGCUGAGG
hsa_m5C_2860	chr9	95005564	95005565	+	ENST00000375315	C2252	m5C	C25	5'-G^GUCACGAAAUGGAUUGGAGUGAACCGG-3'	((((((.............))).))).. ( -5.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr9:95005220-95005220;95005542-95005568	AOPEP	HGNC:1361	ENSG00000148120	GGUCACGAAAUGGAUUGGAGUGAACCGG
hsa_m5C_2861	chrX	53412982	53412983	-	ENST00000375340	C1045	m5C	C4	5'-GGACAAGGUGGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	30526041	14	chrX:53412973-53412986	SMC1A	HGNC:11111	ENSG00000072501	GGACAAGGUGGAGG
hsa_m5C_2862	chrX	53412070	53412071	-	ENST00000375340	C1311	m5C	C9	5'-GGAGAAGGCUCGGCAGG-3'	.(((....)))...... ( -1.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chrX:53412063-53412079	SMC1A	HGNC:11111	ENSG00000072501	GGAGAAGGCUCGGCAGG
hsa_m5C_2863	chrX	53412068	53412069	-	ENST00000375340	C1313	m5C	C11	5'-GGAGAAGGCUCGGCAGG-3'	.(((....)))...... ( -1.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chrX:53412063-53412079	SMC1A	HGNC:11111	ENSG00000072501	GGAGAAGGCUCGGCAGG
hsa_m5C_2864	chrX	53394782	53394783	-	ENST00000375340	C3242	m5C	C5	5'-GGAUCUGAAG^GAUGCCCAGGCUGAGG-3'	((((((...)))).)).......... ( -2.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chrX:53383238-53383253;53394778-53394787	SMC1A	HGNC:11111	ENSG00000072501	GGAUCUGAAGGAUGCCCAGGCUGAGG
hsa_m5C_2865	chrX	53383247	53383248	-	ENST00000375340	C3253	m5C	C16	5'-GGAUCUGAAG^GAUGCCCAGGCUGAGG-3'	((((((...)))).)).......... ( -2.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chrX:53383238-53383253;53394778-53394787	SMC1A	HGNC:11111	ENSG00000072501	GGAUCUGAAGGAUGCCCAGGCUGAGG
hsa_m5C_2866	chrX	53383242	53383243	-	ENST00000375340	C3258	m5C	C21	5'-GGAUCUGAAG^GAUGCCCAGGCUGAGG-3'	((((((...)))).)).......... ( -2.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chrX:53383238-53383253;53394778-53394787	SMC1A	HGNC:11111	ENSG00000072501	GGAUCUGAAGGAUGCCCAGGCUGAGG
hsa_m5C_2867	chrX	53405314	53405315	-	ENST00000375340	C2262	m5C	C9	5'-GGCCAAGGCACGGCGCUGG-3'	.(((.......)))..... ( -3.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	19	chrX:53405305-53405323	SMC1A	HGNC:11111	ENSG00000072501	GGCCAAGGCACGGCGCUGG
hsa_m5C_2868	chrX	53405309	53405310	-	ENST00000375340	C2267	m5C	C14	5'-GGCCAAGGCACGGCGCUGG-3'	.(((.......)))..... ( -3.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	19	chrX:53405305-53405323	SMC1A	HGNC:11111	ENSG00000072501	GGCCAAGGCACGGCGCUGG
hsa_m5C_2869	chrX	53405307	53405308	-	ENST00000375340	C2269	m5C	C16	5'-GGCCAAGGCACGGCGCUGG-3'	.(((.......)))..... ( -3.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	19	chrX:53405305-53405323	SMC1A	HGNC:11111	ENSG00000072501	GGCCAAGGCACGGCGCUGG
hsa_m5C_2870	chrX	53413350	53413351	-	ENST00000375340	C770	m5C	C13	5'-GGGGAGCUGGCGCAGG-3'	.....((....))... ( -0.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	16	chrX:53413348-53413363	SMC1A	HGNC:11111	ENSG00000072501	GGGGAGCUGGCGCAGG
hsa_m5C_2871	chrX	53412111	53412112	-	ENST00000375340	C1270	m5C	C6	5'-GGUGACAUGGAUGAGCUGGAGAAGG-3'	(((..((....)).)))........ ( -0.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chrX:53412093-53412117	SMC1A	HGNC:11111	ENSG00000072501	GGUGACAUGGAUGAGCUGGAGAAGG
hsa_m5C_2872	chr13	113759252	113759253	+	ENST00000375353	C28	m5C	C8	5'-GGGAGAGCCGGGUGGGGCCUCGGG-3'	..(((.(((......))))))... ( -9.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	24	chr13:113759246-113759269	TMEM255B	HGNC:28297	ENSG00000184497	GGGAGAGCCGGGUGGGGCCUCGGG
hsa_m5C_2873	chr13	113325081	113325082	-	ENST00000375430	C1597	m5C	C7	5'-GGAGGCCAAGGCGUGUGG-3'	....((....))...... ( -1.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr13:113325071-113325088	GRTP1	HGNC:20310	ENSG00000139835	GGAGGCCAAGGCGUGUGG
hsa_m5C_2874	chr1	17438424	17438425	-	ENST00000375436	C231	m5C	C6	5'-GGCGGCCCGGCGG-3'	.((......)).. ( -2.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	13	chr1:17438418-17438430	RCC2	HGNC:30297	ENSG00000179051	GGCGGCCCGGCGG
hsa_m5C_2875	chr1	17438422	17438423	-	ENST00000375436	C233	m5C	C8	5'-GGCGGCCCGGCGG-3'	.((......)).. ( -2.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	13	chr1:17438418-17438430	RCC2	HGNC:30297	ENSG00000179051	GGCGGCCCGGCGG
hsa_m5C_2876	chr1	17438419	17438420	-	ENST00000375436	C236	m5C	C11	5'-GGCGGCCCGGCGG-3'	.((......)).. ( -2.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	13	chr1:17438418-17438430	RCC2	HGNC:30297	ENSG00000179051	GGCGGCCCGGCGG
hsa_m5C_2877	chr13	113209734	113209735	+	ENST00000375440	C123	m5C	C7	5'-GGGGGGCGCGGGCGG-3'	.....((....)).. ( -1.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	15	chr13:113209729-113209743	CUL4A	HGNC:2554	ENSG00000139842	GGGGGGCGCGGGCGG
hsa_m5C_2878	chr13	113209736	113209737	+	ENST00000375440	C125	m5C	C9	5'-GGGGGGCGCGGGCGG-3'	.....((....)).. ( -1.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	15	chr13:113209729-113209743	CUL4A	HGNC:2554	ENSG00000139842	GGGGGGCGCGGGCGG
hsa_m5C_2879	chrX	53083062	53083063	+	ENST00000375442	C697	m5C	C6	5'-GGAGGCGGCGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	11	chrX:53083058-53083068	TSPYL2	HGNC:24358	ENSG00000184205	GGAGGCGGCGG
hsa_m5C_2880	chrX	53083065	53083066	+	ENST00000375442	C700	m5C	C9	5'-GGAGGCGGCGG-3'	NA	loop	mRNA	T24,HeLa;Testis,T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMBase database;m6A-Atlas database	31358969	11	chrX:53083058-53083068	TSPYL2	HGNC:24358	ENSG00000184205	GGAGGCGGCGG
hsa_m5C_2881	chr6	31901892	31901893	-	ENST00000375527	C194	m5C	C17	5'-GGGGUCGCUGCCGGCCCCGGGGGGGGGUGGGG-3'	..........((.(((((.....))))).)). (-15.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	32	chr6:31901878-31901909	ZBTB12	HGNC:19066	ENSG00000204366	GGGGUCGCUGCCGGCCCCGGGGGGGGGUGGGG
hsa_m5C_2882	chr1	16352436	16352437	-	ENST00000375592	C44	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	11	chr1:16352432-16352442	FBXO42	HGNC:29249	ENSG00000037637	GGCGGCGGCGG
hsa_m5C_2883	chr13	112819353	112819354	+	ENST00000375645	C1000	m5C	C10	5'-GGAGGAUAUCGGCGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr13:112819345-112819359	ATP11A	HGNC:13552	ENSG00000068650	GGAGGAUAUCGGCGG
hsa_m5C_2884	chr6	31795137	31795138	-	ENST00000375663	C320	m5C	C8	5'-GGGGAGGCUGGGGAGGGUCCCGGAUGGG-3'	.......((((((....))))))..... ( -7.60)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	28	chr6:31795118-31795145	VARS1	HGNC:12651	ENSG00000204394	GGGGAGGCUGGGGAGGGUCCCGGAUGGG
hsa_m5C_2885	chr6	31795027	31795028	-	ENST00000375663	C430	m5C	C5	5'-GGGGCCCGGUGGGCUCUGGGUGUGGGG-3'	(((((((...))))))).......... (-10.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	27	chr6:31795006-31795032	VARS1	HGNC:12651	ENSG00000204394	GGGGCCCGGUGGGCUCUGGGUGUGGGG
hsa_m5C_2886	chr6	31795025	31795026	-	ENST00000375663	C432	m5C	C7	5'-GGGGCCCGGUGGGCUCUGGGUGUGGGG-3'	(((((((...))))))).......... (-10.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	27	chr6:31795006-31795032	VARS1	HGNC:12651	ENSG00000204394	GGGGCCCGGUGGGCUCUGGGUGUGGGG
hsa_m5C_2887	chr6	31779190	31779191	-	ENST00000375663	C3742	m5C	C22	5'-GGUGUGGUGGCUGUUCUGGCCCUGGGGG-3'	.....((.((((.....))))))..... ( -5.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr6:31779185-31779212	VARS1	HGNC:12651	ENSG00000204394	GGUGUGGUGGCUGUUCUGGCCCUGGGGG
hsa_m5C_2888	chr20	32333563	32333564	+	ENST00000375712	C4669	m5C	C6	5'-GGAGGCGGAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	11	chr20:32333559-32333569	KIF3B	HGNC:6320	ENSG00000101350	GGAGGCGGAGG
hsa_m5C_2889	chr9	91361751	91361752	-	ENST00000375731	C167	m5C	C4	5'-GGGCCCGGCGAUCUGGGCCCAGGGCUGGGUACCUGCGGCCGGGG-3'	((((((((....))))))))..(((((........))))).... (-25.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	44	chr9:91361712-91361755	AUH	HGNC:890	ENSG00000148090	GGGCCCGGCGAUCUGGGCCCAGGGCUGGGUACCUGCGGCCGGGG
hsa_m5C_2890	chr9	91361750	91361751	-	ENST00000375731	C168	m5C	C5	5'-GGGCCCGGCGAUCUGGGCCCAGGGCUGGGUACCUGCGGCCGGGG-3'	((((((((....))))))))..(((((........))))).... (-25.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	44	chr9:91361712-91361755	AUH	HGNC:890	ENSG00000148090	GGGCCCGGCGAUCUGGGCCCAGGGCUGGGUACCUGCGGCCGGGG
hsa_m5C_2891	chr9	91361749	91361750	-	ENST00000375731	C169	m5C	C6	5'-GGGCCCGGCGAUCUGGGCCCAGGGCUGGGUACCUGCGGCCGGGG-3'	((((((((....))))))))..(((((........))))).... (-25.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	44	chr9:91361712-91361755	AUH	HGNC:890	ENSG00000148090	GGGCCCGGCGAUCUGGGCCCAGGGCUGGGUACCUGCGGCCGGGG
hsa_m5C_2892	chr9	91361737	91361738	-	ENST00000375731	C181	m5C	C18	5'-GGGCCCGGCGAUCUGGGCCCAGGGCUGGGUACCUGCGGCCGGGG-3'	((((((((....))))))))..(((((........))))).... (-25.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	44	chr9:91361712-91361755	AUH	HGNC:890	ENSG00000148090	GGGCCCGGCGAUCUGGGCCCAGGGCUGGGUACCUGCGGCCGGGG
hsa_m5C_2893	chr9	91361736	91361737	-	ENST00000375731	C182	m5C	C19	5'-GGGCCCGGCGAUCUGGGCCCAGGGCUGGGUACCUGCGGCCGGGG-3'	((((((((....))))))))..(((((........))))).... (-25.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	44	chr9:91361712-91361755	AUH	HGNC:890	ENSG00000148090	GGGCCCGGCGAUCUGGGCCCAGGGCUGGGUACCUGCGGCCGGGG
hsa_m5C_2894	chr9	91361735	91361736	-	ENST00000375731	C183	m5C	C20	5'-GGGCCCGGCGAUCUGGGCCCAGGGCUGGGUACCUGCGGCCGGGG-3'	((((((((....))))))))..(((((........))))).... (-25.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	44	chr9:91361712-91361755	AUH	HGNC:890	ENSG00000148090	GGGCCCGGCGAUCUGGGCCCAGGGCUGGGUACCUGCGGCCGGGG
hsa_m5C_2895	chr1	15785533	15785534	+	ENST00000375771	C2438	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr1:15785529-15785543	FBLIM1	HGNC:24686	ENSG00000162458	GGAGGCUGAGGCAGG
hsa_m5C_2896	chr1	15729873	15729874	+	ENST00000375799	C2392	m5C	C6	5'-GGAUGCCACCAUGGAGAAGCUGGCACUGG-3'	((.(((((............))))))).. ( -5.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr1:15729869-15729897	PLEKHM2	HGNC:29131	ENSG00000116786	GGAUGCCACCAUGGAGAAGCUGGCACUGG
hsa_m5C_2897	chr1	15729877	15729878	+	ENST00000375799	C2396	m5C	C10	5'-GGAUGCCACCAUGGAGAAGCUGGCACUGG-3'	((.(((((............))))))).. ( -5.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr1:15729869-15729897	PLEKHM2	HGNC:29131	ENSG00000116786	GGAUGCCACCAUGGAGAAGCUGGCACUGG
hsa_m5C_2898	chr9	89004297	89004298	+	ENST00000375846	C7793	m5C	C6	5'-GGAGGCUGAGGCUGG-3'	...(((....))).. ( -0.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr9:89004293-89004307	S1PR3	HGNC:3167	ENSG00000213694	GGAGGCUGAGGCUGG
hsa_m5C_2899	chr13	109786080	109786081	-	ENST00000375856	C503	m5C	C12	5'-GGGCGCCGGGCCCGGGCCGCGCGG-3'	..((((..(((....))))))).. (-10.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr13:109786069-109786092	IRS2	HGNC:6126	ENSG00000185950	GGGCGCCGGGCCCGGGCCGCGCGG
hsa_m5C_2900	chr13	109786079	109786080	-	ENST00000375856	C504	m5C	C13	5'-GGGCGCCGGGCCCGGGCCGCGCGG-3'	..((((..(((....))))))).. (-10.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr13:109786069-109786092	IRS2	HGNC:6126	ENSG00000185950	GGGCGCCGGGCCCGGGCCGCGCGG
hsa_m5C_2901	chr9	88462618	88462619	+	ENST00000375859	C478	m5C	C11	5'-GGAAAGGAACCGUUCUGGACCAGG-3'	((...((((...))))...))... ( -2.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr9:88462609-88462632	SPIN1	HGNC:11243	ENSG00000106723	GGAAAGGAACCGUUCUGGACCAGG
hsa_m5C_2902	chr9	88462628	88462629	+	ENST00000375859	C488	m5C	C21	5'-GGAAAGGAACCGUUCUGGACCAGG-3'	((...((((...))))...))... ( -2.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr9:88462609-88462632	SPIN1	HGNC:11243	ENSG00000106723	GGAAAGGAACCGUUCUGGACCAGG
hsa_m5C_2903	chr1	15428886	15428887	+	ENST00000375980	C970	m5C	C11	5'-GGAGGUGGCCCGG-3'	((.......)).. ( -0.50)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database	28418038	13	chr1:15428877-15428889	EFHD2	HGNC:28670	ENSG00000142634	GGAGGUGGCCCGG
hsa_m5C_2904	chr6	31627161	31627162	+	ENST00000376033	C1498	m5C	C5	5'-GGGGCCCCGCCGGGAACUGGGGCCCCCCUGGGG-3'	(((((((((........)))))))))....... (-20.10)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	33	chr6:31627158-31627190	PRRC2A	HGNC:13918	ENSG00000204469	GGGGCCCCGCCGGGAACUGGGGCCCCCCUGGGG
hsa_m5C_2905	chr6	31627162	31627163	+	ENST00000376033	C1499	m5C	C6	5'-GGGGCCCCGCCGGGAACUGGGGCCCCCCUGGGG-3'	(((((((((........)))))))))....... (-20.10)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	33	chr6:31627158-31627190	PRRC2A	HGNC:13918	ENSG00000204469	GGGGCCCCGCCGGGAACUGGGGCCCCCCUGGGG
hsa_m5C_2906	chr6	31627163	31627164	+	ENST00000376033	C1500	m5C	C7	5'-GGGGCCCCGCCGGGAACUGGGGCCCCCCUGGGG-3'	(((((((((........)))))))))....... (-20.10)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	33	chr6:31627158-31627190	PRRC2A	HGNC:13918	ENSG00000204469	GGGGCCCCGCCGGGAACUGGGGCCCCCCUGGGG
hsa_m5C_2907	chr6	31627164	31627165	+	ENST00000376033	C1501	m5C	C8	5'-GGGGCCCCGCCGGGAACUGGGGCCCCCCUGGGG-3'	(((((((((........)))))))))....... (-20.10)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	33	chr6:31627158-31627190	PRRC2A	HGNC:13918	ENSG00000204469	GGGGCCCCGCCGGGAACUGGGGCCCCCCUGGGG
hsa_m5C_2908	chr6	31627179	31627180	+	ENST00000376033	C1516	m5C	C23	5'-GGGGCCCCGCCGGGAACUGGGGCCCCCCUGGGG-3'	(((((((((........)))))))))....... (-20.10)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	33	chr6:31627158-31627190	PRRC2A	HGNC:13918	ENSG00000204469	GGGGCCCCGCCGGGAACUGGGGCCCCCCUGGGG
hsa_m5C_2909	chr6	31627180	31627181	+	ENST00000376033	C1517	m5C	C24	5'-GGGGCCCCGCCGGGAACUGGGGCCCCCCUGGGG-3'	(((((((((........)))))))))....... (-20.10)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	33	chr6:31627158-31627190	PRRC2A	HGNC:13918	ENSG00000204469	GGGGCCCCGCCGGGAACUGGGGCCCCCCUGGGG
hsa_m5C_2910	chr6	31627181	31627182	+	ENST00000376033	C1518	m5C	C25	5'-GGGGCCCCGCCGGGAACUGGGGCCCCCCUGGGG-3'	(((((((((........)))))))))....... (-20.10)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	33	chr6:31627158-31627190	PRRC2A	HGNC:13918	ENSG00000204469	GGGGCCCCGCCGGGAACUGGGGCCCCCCUGGGG
hsa_m5C_2911	chr6	31627182	31627183	+	ENST00000376033	C1519	m5C	C26	5'-GGGGCCCCGCCGGGAACUGGGGCCCCCCUGGGG-3'	(((((((((........)))))))))....... (-20.10)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	33	chr6:31627158-31627190	PRRC2A	HGNC:13918	ENSG00000204469	GGGGCCCCGCCGGGAACUGGGGCCCCCCUGGGG
hsa_m5C_2912	chr6	31631811	31631812	+	ENST00000376033	C3383	m5C	C33	5'-GGGGUUUUCGGGGGACCUAUGGGGGACGAGGGCGGGG-3'	...(((((((.....(((...)))..))))))).... ( -8.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	30872485	37	chr6:31631780-31631816	PRRC2A	HGNC:13918	ENSG00000204469	GGGGUUUUCGGGGGACCUAUGGGGGACGAGGGCGGGG
hsa_m5C_2913	chrX	49247512	49247513	+	ENST00000376227	C1094	m5C	C19	5'-G^GAGCCCCAGGCCCAGGCCACUCAGG-3'	((.(((...)))))............ ( -5.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	26	chrX:49246925-49246925;49247496-49247520	CCDC22	HGNC:28909	ENSG00000101997	GGAGCCCCAGGCCCAGGCCACUCAGG
hsa_m5C_2914	chr13	99982146	99982147	+	ENST00000376335	C364	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	11	chr13:99982142-99982152	ZIC2	HGNC:12873	ENSG00000043355	GGCGGCGGCGG
hsa_m5C_2915	chr13	99982149	99982150	+	ENST00000376335	C367	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	11	chr13:99982142-99982152	ZIC2	HGNC:12873	ENSG00000043355	GGCGGCGGCGG
hsa_m5C_2916	chr9	83956320	83956321	-	ENST00000376344	C422	m5C	C4	5'-GGCCGACGAGGCCGCGGUCAACUGG-3'	(((((.((....)))))))...... ( -9.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr9:83956300-83956324	QNG1	HGNC:28144	ENSG00000165118	GGCCGACGAGGCCGCGGUCAACUGG
hsa_m5C_2917	chr9	83956311	83956312	-	ENST00000376344	C431	m5C	C13	5'-GGCCGACGAGGCCGCGGUCAACUGG-3'	(((((.((....)))))))...... ( -9.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr9:83956300-83956324	QNG1	HGNC:28144	ENSG00000165118	GGCCGACGAGGCCGCGGUCAACUGG
hsa_m5C_2918	chrX	49079870	49079871	-	ENST00000376358	C17	m5C	C4	5'-GGGCUCCAAGGCCCGGGAGGUCAGAAAACCGGGCCGCGGG-3'	.....((..(((((((............)))))))..)). (-19.00)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	40	chrX:49079835-49079874	NA	NA	ENSG00000288053	GGGCUCCAAGGCCCGGGAGGUCAGAAAACCGGGCCGCGGG
hsa_m5C_2919	chrX	49079861	49079862	-	ENST00000376358	C26	m5C	C13	5'-GGGCUCCAAGGCCCGGGAGGUCAGAAAACCGGGCCGCGGG-3'	.....((..(((((((............)))))))..)). (-19.00)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	30872485	40	chrX:49079835-49079874	NA	NA	ENSG00000288053	GGGCUCCAAGGCCCGGGAGGUCAGAAAACCGGGCCGCGGG
hsa_m5C_2920	chrX	49079844	49079845	-	ENST00000376358	C43	m5C	C30	5'-GGGCUCCAAGGCCCGGGAGGUCAGAAAACCGGGCCGCGGG-3'	.....((..(((((((............)))))))..)). (-19.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	40	chrX:49079835-49079874	NA	NA	ENSG00000288053	GGGCUCCAAGGCCCGGGAGGUCAGAAAACCGGGCCGCGGG
hsa_m5C_2921	chrX	49079840	49079841	-	ENST00000376358	C47	m5C	C34	5'-GGGCUCCAAGGCCCGGGAGGUCAGAAAACCGGGCCGCGGG-3'	.....((..(((((((............)))))))..)). (-19.00)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	30872485	40	chrX:49079835-49079874	NA	NA	ENSG00000288053	GGGCUCCAAGGCCCGGGAGGUCAGAAAACCGGGCCGCGGG
hsa_m5C_2922	chr6	30741836	30741837	-	ENST00000376389	C249	m5C	C6	5'-GGUGGCUGGAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	12	chr6:30741831-30741842	FLOT1	HGNC:3757	ENSG00000137312	GGUGGCUGGAGG
hsa_m5C_2923	chr6	30665560	30665561	-	ENST00000376442	C1004	m5C	C10	5'-GGGAUCUCGCCCGGGAGUACCGGGCAGCUGGG-3'	........((((((.....))))))....... (-14.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	32	chr6:30665539-30665570	DHX16	HGNC:2739	ENSG00000204560	GGGAUCUCGCCCGGGAGUACCGGGCAGCUGGG
hsa_m5C_2924	chr6	30665559	30665560	-	ENST00000376442	C1005	m5C	C11	5'-GGGAUCUCGCCCGGGAGUACCGGGCAGCUGGG-3'	........((((((.....))))))....... (-14.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	32	chr6:30665539-30665570	DHX16	HGNC:2739	ENSG00000204560	GGGAUCUCGCCCGGGAGUACCGGGCAGCUGGG
hsa_m5C_2925	chr6	30665558	30665559	-	ENST00000376442	C1006	m5C	C12	5'-GGGAUCUCGCCCGGGAGUACCGGGCAGCUGGG-3'	........((((((.....))))))....... (-14.00)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	32	chr6:30665539-30665570	DHX16	HGNC:2739	ENSG00000204560	GGGAUCUCGCCCGGGAGUACCGGGCAGCUGGG
hsa_m5C_2926	chr6	30665550	30665551	-	ENST00000376442	C1014	m5C	C20	5'-GGGAUCUCGCCCGGGAGUACCGGGCAGCUGGG-3'	........((((((.....))))))....... (-14.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	32	chr6:30665539-30665570	DHX16	HGNC:2739	ENSG00000204560	GGGAUCUCGCCCGGGAGUACCGGGCAGCUGGG
hsa_m5C_2927	chr6	30665549	30665550	-	ENST00000376442	C1015	m5C	C21	5'-GGGAUCUCGCCCGGGAGUACCGGGCAGCUGGG-3'	........((((((.....))))))....... (-14.00)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	32	chr6:30665539-30665570	DHX16	HGNC:2739	ENSG00000204560	GGGAUCUCGCCCGGGAGUACCGGGCAGCUGGG
hsa_m5C_2928	chr6	30665545	30665546	-	ENST00000376442	C1019	m5C	C25	5'-GGGAUCUCGCCCGGGAGUACCGGGCAGCUGGG-3'	........((((((.....))))))....... (-14.00)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	32	chr6:30665539-30665570	DHX16	HGNC:2739	ENSG00000204560	GGGAUCUCGCCCGGGAGUACCGGGCAGCUGGG
hsa_m5C_2929	chrX	48957453	48957454	-	ENST00000376488	C154	m5C	C10	5'-GGGCGUGGGCGGCGGCGGCACGGGCGUGGG-3'	...((((.((....))..))))........ ( -7.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	30	chrX:48957434-48957463	OTUD5	HGNC:25402	ENSG00000068308	GGGCGUGGGCGGCGGCGGCACGGGCGUGGG
hsa_m5C_2930	chrX	48957450	48957451	-	ENST00000376488	C157	m5C	C13	5'-GGGCGUGGGCGGCGGCGGCACGGGCGUGGG-3'	...((((.((....))..))))........ ( -7.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	30	chrX:48957434-48957463	OTUD5	HGNC:25402	ENSG00000068308	GGGCGUGGGCGGCGGCGGCACGGGCGUGGG
hsa_m5C_2931	chrX	48957447	48957448	-	ENST00000376488	C160	m5C	C16	5'-GGGCGUGGGCGGCGGCGGCACGGGCGUGGG-3'	...((((.((....))..))))........ ( -7.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	30	chrX:48957434-48957463	OTUD5	HGNC:25402	ENSG00000068308	GGGCGUGGGCGGCGGCGGCACGGGCGUGGG
hsa_m5C_2932	chrX	48957444	48957445	-	ENST00000376488	C163	m5C	C19	5'-GGGCGUGGGCGGCGGCGGCACGGGCGUGGG-3'	...((((.((....))..))))........ ( -7.20)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	30	chrX:48957434-48957463	OTUD5	HGNC:25402	ENSG00000068308	GGGCGUGGGCGGCGGCGGCACGGGCGUGGG
hsa_m5C_2933	chrX	48922461	48922462	-	ENST00000376488	C2450	m5C	C21	5'-GGGUGUGCACUGGGCAAGGGCAGGG-3'	.....(((.((.....)).)))... ( -3.20)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;293T;HeLa,siControl;HeLa	m5C-RIP-seq:(Medium),RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	25	chrX:48922458-48922482	OTUD5	HGNC:25402	ENSG00000068308	GGGUGUGCACUGGGCAAGGGCAGGG
hsa_m5C_2934	chr10	23440156	23440157	+	ENST00000376495	C1083	m5C	C6	5'-GGGGCCCCAGGGGCUGGGAGAGGG-3'	..(((((...)))))......... ( -7.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr10:23440152-23440175	OTUD1	HGNC:27346	ENSG00000165312	GGGGCCCCAGGGGCUGGGAGAGGG
hsa_m5C_2935	chr10	23440157	23440158	+	ENST00000376495	C1084	m5C	C7	5'-GGGGCCCCAGGGGCUGGGAGAGGG-3'	..(((((...)))))......... ( -7.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr10:23440152-23440175	OTUD1	HGNC:27346	ENSG00000165312	GGGGCCCCAGGGGCUGGGAGAGGG
hsa_m5C_2936	chr10	23440164	23440165	+	ENST00000376495	C1091	m5C	C14	5'-GGGGCCCCAGGGGCUGGGAGAGGG-3'	..(((((...)))))......... ( -7.00)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	24	chr10:23440152-23440175	OTUD1	HGNC:27346	ENSG00000165312	GGGGCCCCAGGGGCUGGGAGAGGG
hsa_m5C_2937	chr10	23439501	23439502	+	ENST00000376495	C428	m5C	C6	5'-GGGGCCCCGGGUCCCACGG-3'	((((((...)))))).... (-10.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr10:23439497-23439515	OTUD1	HGNC:27346	ENSG00000165312	GGGGCCCCGGGUCCCACGG
hsa_m5C_2938	chr9	81611798	81611799	-	ENST00000376499	C2531	m5C	C4	5'-GGCCGCCGUGGUGG-3'	..((((....)))) ( -2.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr9:81611789-81611802	TLE1	HGNC:11837	ENSG00000196781	GGCCGCCGUGGUGG
hsa_m5C_2939	chr9	81611795	81611796	-	ENST00000376499	C2534	m5C	C7	5'-GGCCGCCGUGGUGG-3'	..((((....)))) ( -2.80)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr9:81611789-81611802	TLE1	HGNC:11837	ENSG00000196781	GGCCGCCGUGGUGG
hsa_m5C_2940	chrX	48918870	48918871	-	ENST00000376509	C154	m5C	C26	5'-GGGCGUCCACGCCCUGCGGGCUUAGCGGGUUCAGUGGG-3'	......((((..(((((.......)))))....)))). (-13.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	38	chrX:48918859-48918896	PIM2	HGNC:8987	ENSG00000102096	GGGCGUCCACGCCCUGCGGGCUUAGCGGGUUCAGUGGG
hsa_m5C_2941	chr6	30542257	30542258	-	ENST00000376621	C5924	m5C	C9	5'-GGUGGUGGCGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	11	chr6:30542256-30542266	GNL1	HGNC:4413	ENSG00000204590	GGUGGUGGCGG
hsa_m5C_2942	chr6	30493192	30493193	+	ENST00000376630	C1547	m5C	C6	5'-GGAGGCGGAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold;rG4-seq:(High)	RMVar database	28418038	11	chr6:30493188-30493198	HLA-E	HGNC:4962	ENSG00000204592	GGAGGCGGAGG
hsa_m5C_2943	chr6	30493057	30493058	+	ENST00000376630	C1412	m5C	C7	5'-GGGAGGCCGAGGAGGG-3'	((....))........ ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr6:30493052-30493067	HLA-E	HGNC:4962	ENSG00000204592	GGGAGGCCGAGGAGGG
hsa_m5C_2944	chr9	76386954	76386955	-	ENST00000376736	C1167	m5C	C7	5'-GGGAGGCCGAGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr9:76386947-76386961	RFK	HGNC:30324	ENSG00000135002	GGGAGGCCGAGGUGG
hsa_m5C_2945	chr9	76386953	76386954	-	ENST00000376736	C1168	m5C	C8	5'-GGGAGGCCGAGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr9:76386947-76386961	RFK	HGNC:30324	ENSG00000135002	GGGAGGCCGAGGUGG
hsa_m5C_2946	chr11	67303560	67303561	+	ENST00000376757	C84	m5C	C10	5'-GGUCCAGGACUGUCCGCGGGGUUGAGGGAAGGGG-3'	..(((..((((........))))..)))...... ( -5.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	34	chr11:67303552-67303585	SSH3	HGNC:30581	ENSG00000172830	GGUCCAGGACUGUCCGCGGGGUUGAGGGAAGGGG
hsa_m5C_2947	chr1	11285834	11285835	+	ENST00000376810	C1055	m5C	C18	5'-GGGACAUGGAGUCCGACCGGGAGGCUG-3'	.((((.....))))..((....))... ( -6.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr1:11285818-11285844	UBIAD1	HGNC:30791	ENSG00000120942	GGGACAUGGAGUCCGACCGGGAGGCUG
hsa_m5C_2948	chr13	95642082	95642083	-	ENST00000376829	C802	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969	11	chr13:95642075-95642085	DZIP1	HGNC:20908	ENSG00000134874	GGCGGCGGCGG
hsa_m5C_2949	chr13	95642079	95642080	-	ENST00000376829	C805	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	11	chr13:95642075-95642085	DZIP1	HGNC:20908	ENSG00000134874	GGCGGCGGCGG
hsa_m5C_2950	chr13	95642076	95642077	-	ENST00000376829	C808	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	11	chr13:95642075-95642085	DZIP1	HGNC:20908	ENSG00000134874	GGCGGCGGCGG
hsa_m5C_2951	chr9	75028175	75028176	-	ENST00000376834	C118	m5C	C18	5'-GGCUGCGGGGGAGGAGGCGG-3'	..((((..........)))) ( -3.00)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	20	chr9:75028174-75028193	CARNMT1	HGNC:23435	ENSG00000156017	GGCUGCGGGGGAGGAGGCGG
hsa_m5C_2952	chr12	123533689	123533690	-	ENST00000376874	C30	m5C	C26	5'-GGGAGCAGCUCCGGGCCGAGCCGGGCGCCCAGACCCCGGG-3'	.((.((.((.((((......)))))))))).......... (-14.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	40	chr12:123533676-123533715	RILPL1	HGNC:26814	ENSG00000188026	GGGAGCAGCUCCGGGCCGAGCCGGGCGCCCAGACCCCGGG
hsa_m5C_2953	chr17	45263573	45263574	-	ENST00000376926	C4137	m5C	C8	5'-GGCAGGGCAGGGCAGGG-3'	.((........)).... ( -0.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	17	chr17:45263565-45263581	MAP3K14	HGNC:6853	ENSG00000006062	GGCAGGGCAGGGCAGGG
hsa_m5C_2954	chr17	45263568	45263569	-	ENST00000376926	C4142	m5C	C13	5'-GGCAGGGCAGGGCAGGG-3'	.((........)).... ( -0.70)	loop	mRNA	HeLa,rip antibody: ALYREF;HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database;RMVar database	28418038	17	chr17:45263565-45263581	MAP3K14	HGNC:6853	ENSG00000006062	GGCAGGGCAGGGCAGGG
hsa_m5C_2955	chr17	45271187	45271188	-	ENST00000376926	C1922	m5C	C3	5'-GGCUCCGGAGGUGG-3'	....(((....))) ( -0.30)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	14	chr17:45271177-45271190	MAP3K14	HGNC:6853	ENSG00000006062	GGCUCCGGAGGUGG
hsa_m5C_2956	chr13	94711420	94711421	-	ENST00000376945	C1125	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	11	chr13:94711416-94711426	SOX21	HGNC:11197	ENSG00000125285	GGCGGCGGCGG
hsa_m5C_2957	chr13	94711417	94711418	-	ENST00000376945	C1128	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	11	chr13:94711416-94711426	SOX21	HGNC:11197	ENSG00000125285	GGCGGCGGCGG
hsa_m5C_2958	chr9	72365072	72365073	-	ENST00000376962	C136	m5C	C15	5'-GGCCCCAGGCCUCGCGGCGCGCGG-3'	((((...)))).((((...)))). (-10.10)	loop	mRNA	293T;HeLa	m5C-RIP-seq:(Medium);UBS-seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991	38168991	24	chr9:72365064-72365087	ZFAND5	HGNC:13008	ENSG00000107372	GGCCCCAGGCCUCGCGGCGCGCGG
hsa_m5C_2959	chrX	47650496	47650497	-	ENST00000376983	C67	m5C	C20	5'-GGAACCCAGGCCUGGGGGGCGGUGGG-3'	....((((.((((...))))..)))) (-10.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	26	chrX:47650491-47650516	ELK1	HGNC:3321	ENSG00000126767	GGAACCCAGGCCUGGGGGGCGGUGGG
hsa_m5C_2960	chr1	10458789	10458790	-	ENST00000377038	C3767	m5C	C6	5'-GGAGGCCAAGGCAGAUGG-3'	....((....))...... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	18	chr1:10458778-10458795	DFFA	HGNC:2772	ENSG00000160049	GGAGGCCAAGGCAGAUGG
hsa_m5C_2961	chr1	10458788	10458789	-	ENST00000377038	C3768	m5C	C7	5'-GGAGGCCAAGGCAGAUGG-3'	....((....))...... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	18	chr1:10458778-10458795	DFFA	HGNC:2772	ENSG00000160049	GGAGGCCAAGGCAGAUGG
hsa_m5C_2962	chr1	10460686	10460687	-	ENST00000377038	C1870	m5C	C3	5'-GGCGUGGUGGCAGG-3'	.((......))... ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	14	chr1:10460676-10460689	DFFA	HGNC:2772	ENSG00000160049	GGCGUGGUGGCAGG
hsa_m5C_2963	chr1	10460780	10460781	-	ENST00000377038	C1776	m5C	C7	5'-GGGAGGCCGAGGCGGGUGGAUCACG-3'	((...(((......)))...))... ( -4.60)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	25	chr1:10460763-10460787	DFFA	HGNC:2772	ENSG00000160049	GGGAGGCCGAGGCGGGUGGAUCACG
hsa_m5C_2964	chr1	10460779	10460780	-	ENST00000377038	C1777	m5C	C8	5'-GGGAGGCCGAGGCGGGUGGAUCACG-3'	((...(((......)))...))... ( -4.60)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	25	chr1:10460763-10460787	DFFA	HGNC:2772	ENSG00000160049	GGGAGGCCGAGGCGGGUGGAUCACG
hsa_m5C_2965	chr1	10460763	10460764	-	ENST00000377038	C1793	m5C	C24	5'-GGGAGGCCGAGGCGGGUGGAUCACG-3'	((...(((......)))...))... ( -4.60)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	25	chr1:10460763-10460787	DFFA	HGNC:2772	ENSG00000160049	GGGAGGCCGAGGCGGGUGGAUCACG
hsa_m5C_2966	chr12	121549633	121549634	-	ENST00000377071	C514	m5C	C7	5'-GG^GGAGCCGGCGG-3'	((....))..... ( -1.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	13	chr12:121549628-121549638;121574547-121574548	KDM2B	HGNC:13610	ENSG00000089094	GGGGAGCCGGCGG
hsa_m5C_2967	chr2	96761473	96761474	+	ENST00000377075	C573	m5C	C3	5'-GGCCCUGGCUGAAGUGGACGG-3'	..((((......)).)).... ( -2.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr2:96761472-96761492	CNNM4	HGNC:105	ENSG00000158158	GGCCCUGGCUGAAGUGGACGG
hsa_m5C_2968	chr11	65040055	65040056	+	ENST00000377244	C1392	m5C	C7	5'-GGAGUGCAGUGGUGGGAUCGCGG-3'	........(((((...))))).. ( -2.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	23	chr11:65040050-65040072	SNX15	HGNC:14978	ENSG00000110025	GGAGUGCAGUGGUGGGAUCGCGG
hsa_m5C_2969	chr11	65034848	65034849	+	ENST00000377244	C358	m5C	C17	5'-GGCCCAGGUGUUUG^GCCGG-3'	((((.........)))).. ( -6.10)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr11:65032538-65032551;65034847-65034851	SNX15	HGNC:14978	ENSG00000110025	GGCCCAGGUGUUUGGCCGG
hsa_m5C_2970	chr6	28365564	28365565	+	ENST00000377255	C1194	m5C	C15	5'-GGUGAACAGGAGGGCAGG-3'	NA	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	18	chr6:28365551-28365568	ZKSCAN3	HGNC:13853	ENSG00000189298	GGUGAACAGGAGGGCAGG
hsa_m5C_2971	chr1	9849996	9849997	-	ENST00000377263	C1285	m5C	C11	5'-GGCUCUGGGCCUGAGGGUCCACCUGG-3'	((...((((((....))))))))... ( -8.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr1:9849982-9850007	CTNNBIP1	HGNC:16913	ENSG00000178585	GGCUCUGGGCCUGAGGGUCCACCUGG
hsa_m5C_2972	chr11	64894706	64894707	-	ENST00000377264	C6157	m5C	C4	5'-GGACGGAGGCUUUUGG-3'	NA	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	16	chr11:64894695-64894710	ATG2A	HGNC:29028	ENSG00000110046	GGACGGAGGCUUUUGG
hsa_m5C_2973	chr11	64910904	64910905	-	ENST00000377264	C1590	m5C	C20	5'-GGAGCUGCGGACGGGCAGUCGGG-3'	...(((((......))))).... ( -7.30)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	23	chr11:64910902-64910924	ATG2A	HGNC:29028	ENSG00000110046	GGAGCUGCGGACGGGCAGUCGGG
hsa_m5C_2974	chr11	64907579	64907580	-	ENST00000377264	C2666	m5C	C12	5'-GGCUUCCCCGGCCCCUCAGGCUUCUGG-3'	((((.....))))...(((....))). ( -5.60)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	27	chr11:64907565-64907591	ATG2A	HGNC:29028	ENSG00000110046	GGCUUCCCCGGCCCCUCAGGCUUCUGG
hsa_m5C_2975	chr11	64909803	64909804	-	ENST00000377264	C2058	m5C	C9	5'-GGGCGGGCCAGGCCGUGCGGG-3'	..((((((...))).)))... ( -6.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr11:64909792-64909812	ATG2A	HGNC:29028	ENSG00000110046	GGGCGGGCCAGGCCGUGCGGG
hsa_m5C_2976	chr11	64909798	64909799	-	ENST00000377264	C2063	m5C	C14	5'-GGGCGGGCCAGGCCGUGCGGG-3'	..((((((...))).)))... ( -6.00)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr11:64909792-64909812	ATG2A	HGNC:29028	ENSG00000110046	GGGCGGGCCAGGCCGUGCGGG
hsa_m5C_2977	chr11	64810014	64810015	-	ENST00000377326	C594	m5C	C14	5'-GGCCGAGAGGAGCCGGACCUGG-3'	(((((........))).))... ( -5.80)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	22	chr11:64810007-64810028	MEN1	HGNC:7010	ENSG00000133895	GGCCGAGAGGAGCCGGACCUGG
hsa_m5C_2978	chr1	9264077	9264078	+	ENST00000377403	C1888	m5C	C5	5'-GGAGCAGCUGGUGCCAGGGCCAGGG-3'	.......(((((......))))).. ( -7.10)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr1:9264074-9264098	H6PD	HGNC:4795	ENSG00000049239	GGAGCAGCUGGUGCCAGGGCCAGGG
hsa_m5C_2979	chr1	9041869	9041870	-	ENST00000377424	C585	m5C	C35	5'-GGGAGCUGGCCCCUAAAAACCUGCGGGGGGCUCUCGGGG-3'	(((((((..((((...........))))))))))).... (-16.70)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	39	chr1:9041866-9041904	SLC2A5	HGNC:11010	ENSG00000142583	GGGAGCUGGCCCCUAAAAACCUGCGGGGGGCUCUCGGGG
hsa_m5C_2980	chr1	8026298	8026299	-	ENST00000377482	C11	m5C	C8	5'-GGCGGUCCGGUGCGAGG-3'	.(((......))).... ( -2.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr1:8026290-8026306	ERRFI1	HGNC:18185	ENSG00000116285	GGCGGUCCGGUGCGAGG
hsa_m5C_2981	chr1	8026303	8026304	-	ENST00000377482	C6	m5C	C3	5'-GGCGGUCCGGUGCGAGG-3'	.(((......))).... ( -2.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr1:8026290-8026306	ERRFI1	HGNC:18185	ENSG00000116285	GGCGGUCCGGUGCGAGG
hsa_m5C_2982	chr1	6632409	6632410	+	ENST00000377627	C401	m5C	C9	5'-GGCGGGGGCCGGAGAGG-3'	(((....)))....... ( -5.20)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	17	chr1:6632402-6632418	THAP3	HGNC:20855	ENSG00000041988	GGCGGGGGCCGGAGAGG
hsa_m5C_2983	chr1	6524991	6524992	-	ENST00000377705	C2982	m5C	C6	5'-GGAGGCCAAGGCAGG-3'	....((....))... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr1:6524983-6524997	NOL9	HGNC:26265	ENSG00000162408	GGAGGCCAAGGCAGG
hsa_m5C_2984	chr1	6524990	6524991	-	ENST00000377705	C2983	m5C	C7	5'-GGAGGCCAAGGCAGG-3'	....((....))... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr1:6524983-6524997	NOL9	HGNC:26265	ENSG00000162408	GGAGGCCAAGGCAGG
hsa_m5C_2985	chr1	6524985	6524986	-	ENST00000377705	C2988	m5C	C12	5'-GGAGGCCAAGGCAGG-3'	....((....))... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr1:6524983-6524997	NOL9	HGNC:26265	ENSG00000162408	GGAGGCCAAGGCAGG
hsa_m5C_2986	chr1	6524857	6524858	-	ENST00000377705	C3116	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr1:6524849-6524863	NOL9	HGNC:26265	ENSG00000162408	GGAGGCUGAGGCAGG
hsa_m5C_2987	chr1	6523549	6523550	-	ENST00000377705	C4424	m5C	C3	5'-GGCUGGAGUGCAGUGGCGCAAUCUGG-3'	..(((((((((....))))..))))) ( -6.30)	loop	mRNA	293T;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	26	chr1:6523527-6523552	NOL9	HGNC:26265	ENSG00000162408	GGCUGGAGUGCAGUGGCGCAAUCUGG
hsa_m5C_2988	chr1	6523541	6523542	-	ENST00000377705	C4432	m5C	C11	5'-GGCUGGAGUGCAGUGGCGCAAUCUGG-3'	..(((((((((....))))..))))) ( -6.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chr1:6523527-6523552	NOL9	HGNC:26265	ENSG00000162408	GGCUGGAGUGCAGUGGCGCAAUCUGG
hsa_m5C_2989	chr1	6523535	6523536	-	ENST00000377705	C4438	m5C	C17	5'-GGCUGGAGUGCAGUGGCGCAAUCUGG-3'	..(((((((((....))))..))))) ( -6.30)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	26	chr1:6523527-6523552	NOL9	HGNC:26265	ENSG00000162408	GGCUGGAGUGCAGUGGCGCAAUCUGG
hsa_m5C_2990	chr1	6522846	6522847	-	ENST00000377705	C5127	m5C	C11	5'-GGCUGGGGUGCAGUGG-3'	.((((.....)))).. ( -3.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	16	chr1:6522842-6522857	NOL9	HGNC:26265	ENSG00000162408	GGCUGGGGUGCAGUGG
hsa_m5C_2991	chr1	6525028	6525029	-	ENST00000377705	C2945	m5C	C12	5'-GGGGCCAGGCGCAGUGG-3'	....(((.......))) ( -0.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	17	chr1:6525024-6525040	NOL9	HGNC:26265	ENSG00000162408	GGGGCCAGGCGCAGUGG
hsa_m5C_2992	chr9	38068689	38068690	-	ENST00000377707	C538	m5C	C3	5'-GGCGGCGGACCGG-3'	..(((....))). ( -2.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969	13	chr9:38068680-38068692	SHB	HGNC:10838	ENSG00000107338	GGCGGCGGACCGG
hsa_m5C_2993	chr9	37919654	37919655	-	ENST00000377707	C2278	m5C	C5	5'-GGGGCUGGAGAAGGCCUGG-3'	.(((((......))))).. ( -6.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038;31061524	19	chr9:37919641-37919659	SHB	HGNC:10838	ENSG00000107338	GGGGCUGGAGAAGGCCUGG
hsa_m5C_2994	chr9	37592591	37592592	-	ENST00000377773	C6	m5C	C5	5'-GGCGCGAGGCGGCCACCGUGG-3'	(((........)))....... ( -5.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	21	chr9:37592576-37592596	TOMM5	HGNC:31369	ENSG00000175768	GGCGCGAGGCGGCCACCGUGG
hsa_m5C_2995	chr9	37486794	37486795	+	ENST00000377792	C643	m5C	C12	5'-GGAAGAGGAAUCAACGGAUCCUG^G-3'	.....((((.((....)))))).. ( -2.70)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr9:37486784-37486806;37487863-37487863	POLR1E	HGNC:17631	ENSG00000137054	GGAAGAGGAAUCAACGGAUCCUGG
hsa_m5C_2996	chr11	63956484	63956485	+	ENST00000377793	C2815	m5C	C17	5'-GGAUACGUGGCACCAACUGGUCAAUGG-3'	.....(((...(((....)))..))). ( -2.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	27	chr11:63956469-63956495	NAA40	HGNC:25845	ENSG00000110583	GGAUACGUGGCACCAACUGGUCAAUGG
hsa_m5C_2997	chr1	6211898	6211899	+	ENST00000377939	C1326	m5C	C26	5'-GGGGGCUUAGGCCCCAAGGCGCUGACGG-3'	.(((((....)))))............. (-11.20)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	m5C-RIP-seq:(Medium)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	31061524	28	chr1:6211874-6211901	RNF207	HGNC:32947	ENSG00000158286	GGGGGCUUAGGCCCCAAGGCGCUGACGG
hsa_m5C_2998	chr9	36036925	36036926	+	ENST00000377966	C14	m5C	C6	5'-GGCGGCGGUAGCGG-3'	....((....)).. ( -1.70)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr9:36036921-36036934	RECK	HGNC:11345	ENSG00000122707	GGCGGCGGUAGCGG
hsa_m5C_2999	chr11	62518016	62518017	-	ENST00000378024	C16646	m5C	C13	5'-GGAGCCUUGGGGCCACUGG-3'	...(((....)))...... ( -3.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	19	chr11:62518011-62518029	AHNAK	HGNC:347	ENSG00000124942	GGAGCCUUGGGGCCACUGG
hsa_m5C_3000	chr11	62518015	62518016	-	ENST00000378024	C16647	m5C	C14	5'-GGAGCCUUGGGGCCACUGG-3'	...(((....)))...... ( -3.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	19	chr11:62518011-62518029	AHNAK	HGNC:347	ENSG00000124942	GGAGCCUUGGGGCCACUGG
hsa_m5C_3001	chr12	106247638	106247639	-	ENST00000378026	C382	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969	11	chr12:106247631-106247641	CKAP4	HGNC:16991	ENSG00000136026	GGCGGCGGCGG
hsa_m5C_3002	chr12	106247635	106247636	-	ENST00000378026	C385	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	11	chr12:106247631-106247641	CKAP4	HGNC:16991	ENSG00000136026	GGCGGCGGCGG
hsa_m5C_3003	chr12	106247632	106247633	-	ENST00000378026	C388	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	11	chr12:106247631-106247641	CKAP4	HGNC:16991	ENSG00000136026	GGCGGCGGCGG
hsa_m5C_3004	chr1	3650033	3650034	-	ENST00000378322	C25	m5C	C17	5'-GGGUCCCGCGGGUUUUCGGGCGCAGGG-3'	....((((((..........))).))) ( -6.80)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;HeLa,siControl;HeLa	m5C-RIP-seq:(Medium),RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	27	chr1:3650024-3650050	WRAP73	HGNC:12759	ENSG00000116213	GGGUCCCGCGGGUUUUCGGGCGCAGGG
hsa_m5C_3005	chrX	40647520	40647521	-	ENST00000378426	C34	m5C	C6	5'-GGAGACAUGGUGCUGUCGGAGCUAGCGG-3'	...((((......))))........... ( -3.00)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chrX:40647499-40647526	CXorf38	HGNC:28589	ENSG00000185753	GGAGACAUGGUGCUGUCGGAGCUAGCGG
hsa_m5C_3006	chrX	40629724	40629725	-	ENST00000378426	C2091	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	frontal_cortex	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chrX:40629722-40629736	CXorf38	HGNC:28589	ENSG00000185753	GGAGGCUGAGGCAGG
hsa_m5C_3007	chr1	2228330	2228331	+	ENST00000378536	C13	m5C	C3	5'-GGCCCCUCGGCCUCGGCCGCCGCGG-3'	(((.....(((....)))))).... ( -8.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr1:2228329-2228353	SKI	HGNC:10896	ENSG00000157933	GGCCCCUCGGCCUCGGCCGCCGCGG
hsa_m5C_3008	chr1	2228332	2228333	+	ENST00000378536	C15	m5C	C5	5'-GGCCCCUCGGCCUCGGCCGCCGCGG-3'	(((.....(((....)))))).... ( -8.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr1:2228329-2228353	SKI	HGNC:10896	ENSG00000157933	GGCCCCUCGGCCUCGGCCGCCGCGG
hsa_m5C_3009	chr1	2306814	2306815	+	ENST00000378536	C2685	m5C	C14	5'-GGGUGCAGGGGGGCGCGGCUGGG-3'	..((((......))))....... ( -4.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	23	chr1:2306802-2306824	SKI	HGNC:10896	ENSG00000157933	GGGUGCAGGGGGGCGCGGCUGGG
hsa_m5C_3010	chr9	35107971	35107972	-	ENST00000378561	C3359	m5C	C7	5'-GGGGCUCUUAGGCCCAGAGGGACCGGGGCUGGG-3'	..((((((..(((((...))).))))))))... (-12.30)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	33	chr9:35107946-35107978	ATOSB	HGNC:25666	ENSG00000005238	GGGGCUCUUAGGCCCAGAGGGACCGGGGCUGGG
hsa_m5C_3011	chr5	132825838	132825839	-	ENST00000378679	C856	m5C	C6	5'-GGUCCCGGGGACCCCGG-3'	....(((((...))))) ( -7.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr5:132825828-132825844	SHROOM1	HGNC:24084	ENSG00000164403	GGUCCCGGGGACCCCGG
hsa_m5C_3012	chr5	132825829	132825830	-	ENST00000378679	C865	m5C	C15	5'-GGUCCCGGGGACCCCGG-3'	....(((((...))))) ( -7.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr5:132825828-132825844	SHROOM1	HGNC:24084	ENSG00000164403	GGUCCCGGGGACCCCGG
hsa_m5C_3013	chr5	132825936	132825937	-	ENST00000378679	C758	m5C	C10	5'-GGUUUGGGGCGGCCCGG-3'	....((((....)))). ( -5.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr5:132825930-132825946	SHROOM1	HGNC:24084	ENSG00000164403	GGUUUGGGGCGGCCCGG
hsa_m5C_3014	chr5	132813398	132813399	+	ENST00000378693	C98	m5C	C14	5'-GGGCCCGGCGGGGCGCUGGGGGUGGG-3'	...(((((((...)))))))...... (-11.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	26	chr5:132813386-132813411	SOWAHA	HGNC:27033	ENSG00000198944	GGGCCCGGCGGGGCGCUGGGGGUGGG
hsa_m5C_3015	chr10	13209115	13209116	+	ENST00000378694	C2599	m5C	C6	5'-GGGAACGGGACGGAAUGCUAAAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	24	chr10:13209111-13209134	MCM10	HGNC:18043	ENSG00000065328	GGGAACGGGACGGAAUGCUAAAGG
hsa_m5C_3016	chr10	13209120	13209121	+	ENST00000378694	C2604	m5C	C11	5'-GGGAACGGGACGGAAUGCUAAAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	24	chr10:13209111-13209134	MCM10	HGNC:18043	ENSG00000065328	GGGAACGGGACGGAAUGCUAAAGG
hsa_m5C_3017	chr5	132695257	132695258	-	ENST00000378746	C3695	m5C	C6	5'-GGAGGCGGAGG-3'	NA	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;RMVar database	28418038	11	chr5:132695253-132695263	KIF3A	HGNC:6319	ENSG00000131437	GGAGGCGGAGG
hsa_m5C_3018	chr11	45913894	45913895	-	ENST00000378750	C877	m5C	C9	5'-GGAGGGAGCGGCGGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr11:45913889-45913903	PEX16	HGNC:8857	ENSG00000121680	GGAGGGAGCGGCGGG
hsa_m5C_3019	chr16	71922600	71922601	+	ENST00000378799	C754	m5C	C17	5'-GGUGGACCUGAUGGAACGG-3'	..((..((....))..)). ( -2.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr16:71922585-71922603	IST1	HGNC:28977	ENSG00000182149	GGUGGACCUGAUGGAACGG
hsa_m5C_3020	chr1	1348905	1348906	-	ENST00000378888	C513	m5C	C5	5'-GGACCAGGACUUCGG^GGUGGUGAAGG-3'	.........(((((......))))). ( -4.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	26	chr1:1342748-1342758;1348896-1348910	DVL1	HGNC:3084	ENSG00000107404	GGACCAGGACUUCGGGGUGGUGAAGG
hsa_m5C_3021	chr1	1340411	1340412	-	ENST00000378888	C1050	m5C	C12	5'-GGCAGGCGGACCGG-3'	((........)).. ( -0.60)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	14	chr1:1340410-1340423	DVL1	HGNC:3084	ENSG00000107404	GGCAGGCGGACCGG
hsa_m5C_3022	chr1	1342388	1342389	-	ENST00000378888	C689	m5C	C9	5'-GGCGGCAUCGGGG-3'	NA	loop	mRNA	frontal_cortex,heart,liver,Muscle,Testis,HeLa;293T;HeLa,siControl;HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;38168991;m6A-Atlas database;RMVar database	30872485;28418038;31061524;38168991	13	chr1:1342385-1342397	DVL1	HGNC:3084	ENSG00000107404	GGCGGCAUCGGGG
hsa_m5C_3023	chr1	1336257	1336258	-	ENST00000378888	C2325	m5C	C11	5'-GGGGGGGCCACCCGGGGGACCCCCUGUCCGGG-3'	(((((..((......))..)))))........ (-14.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	32	chr1:1336237-1336268	DVL1	HGNC:3084	ENSG00000107404	GGGGGGGCCACCCGGGGGACCCCCUGUCCGGG
hsa_m5C_3024	chr1	1336255	1336256	-	ENST00000378888	C2327	m5C	C13	5'-GGGGGGGCCACCCGGGGGACCCCCUGUCCGGG-3'	(((((..((......))..)))))........ (-14.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	32	chr1:1336237-1336268	DVL1	HGNC:3084	ENSG00000107404	GGGGGGGCCACCCGGGGGACCCCCUGUCCGGG
hsa_m5C_3025	chr7	108166963	108166964	-	ENST00000379028	C3948	m5C	C15	5'-GGUGCUGUGGGGGACUCUGG-3'	(((.((....)).))).... ( -2.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	20	chr7:108166959-108166978	NRCAM	HGNC:7994	ENSG00000091129	GGUGCUGUGGGGGACUCUGG
hsa_m5C_3026	chr15	88639414	88639415	+	ENST00000379224	C347	m5C	C5	5'-GGGGCUGGGGCCCCACCGGGAGAGUGG-3'	(((((....))))).(((......))) (-11.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr15:88639411-88639437	ISG20	HGNC:6130	ENSG00000172183	GGGGCUGGGGCCCCACCGGGAGAGUGG
hsa_m5C_3027	chr15	88639420	88639421	+	ENST00000379224	C353	m5C	C11	5'-GGGGCUGGGGCCCCACCGGGAGAGUGG-3'	(((((....))))).(((......))) (-11.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr15:88639411-88639437	ISG20	HGNC:6130	ENSG00000172183	GGGGCUGGGGCCCCACCGGGAGAGUGG
hsa_m5C_3028	chr15	88639421	88639422	+	ENST00000379224	C354	m5C	C12	5'-GGGGCUGGGGCCCCACCGGGAGAGUGG-3'	(((((....))))).(((......))) (-11.30)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	27	chr15:88639411-88639437	ISG20	HGNC:6130	ENSG00000172183	GGGGCUGGGGCCCCACCGGGAGAGUGG
hsa_m5C_3029	chr15	88639422	88639423	+	ENST00000379224	C355	m5C	C13	5'-GGGGCUGGGGCCCCACCGGGAGAGUGG-3'	(((((....))))).(((......))) (-11.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr15:88639411-88639437	ISG20	HGNC:6130	ENSG00000172183	GGGGCUGGGGCCCCACCGGGAGAGUGG
hsa_m5C_3030	chr15	88639423	88639424	+	ENST00000379224	C356	m5C	C14	5'-GGGGCUGGGGCCCCACCGGGAGAGUGG-3'	(((((....))))).(((......))) (-11.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr15:88639411-88639437	ISG20	HGNC:6130	ENSG00000172183	GGGGCUGGGGCCCCACCGGGAGAGUGG
hsa_m5C_3031	chr15	88639425	88639426	+	ENST00000379224	C358	m5C	C16	5'-GGGGCUGGGGCCCCACCGGGAGAGUGG-3'	(((((....))))).(((......))) (-11.30)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	27	chr15:88639411-88639437	ISG20	HGNC:6130	ENSG00000172183	GGGGCUGGGGCCCCACCGGGAGAGUGG
hsa_m5C_3032	chr15	88639426	88639427	+	ENST00000379224	C359	m5C	C17	5'-GGGGCUGGGGCCCCACCGGGAGAGUGG-3'	(((((....))))).(((......))) (-11.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	27	chr15:88639411-88639437	ISG20	HGNC:6130	ENSG00000172183	GGGGCUGGGGCCCCACCGGGAGAGUGG
hsa_m5C_3033	chr2	36598041	36598042	-	ENST00000379245	C150	m5C	C4	5'-GGGCGGAGGCGGGGGCCGAGGCGGGUGGGGG-3'	..((...(((....)))...))......... ( -8.50)	bulge	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	30872485	31	chr2:36598015-36598045	FEZ2	HGNC:3660	ENSG00000171055	GGGCGGAGGCGGGGGCCGAGGCGGGUGGGGG
hsa_m5C_3034	chr13	41458302	41458303	+	ENST00000379359	C226	m5C	C3	5'-GGCGGCCGCGGAGG-3'	.((....))..... ( -0.90)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	14	chr13:41458301-41458314	RGCC	HGNC:20369	ENSG00000102760	GGCGGCCGCGGAGG
hsa_m5C_3035	chr13	41458305	41458306	+	ENST00000379359	C229	m5C	C6	5'-GGCGGCCGCGGAGG-3'	.((....))..... ( -0.90)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	14	chr13:41458301-41458314	RGCC	HGNC:20369	ENSG00000102760	GGCGGCCGCGGAGG
hsa_m5C_3036	chr13	41458306	41458307	+	ENST00000379359	C230	m5C	C7	5'-GGCGGCCGCGGAGG-3'	.((....))..... ( -0.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	14	chr13:41458301-41458314	RGCC	HGNC:20369	ENSG00000102760	GGCGGCCGCGGAGG
hsa_m5C_3037	chr13	41458308	41458309	+	ENST00000379359	C232	m5C	C9	5'-GGCGGCCGCGGAGG-3'	.((....))..... ( -0.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	14	chr13:41458301-41458314	RGCC	HGNC:20369	ENSG00000102760	GGCGGCCGCGGAGG
hsa_m5C_3038	chr5	131201888	131201889	+	ENST00000379380	C2680	m5C	C11	5'-GGUUGGAGUGCAGUGGCAUGG-3'	.......((((....)))).. ( -2.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	21	chr5:131201879-131201899	LYRM7	HGNC:28072	ENSG00000186687	GGUUGGAGUGCAGUGGCAUGG
hsa_m5C_3039	chr6	12012369	12012370	+	ENST00000379388	C59	m5C	C27	5'-GGGCGGCGGCAGGGUGGCGGACGGAGCGGGGGACCGGGG-3'	..((.((......)).))........(((....)))... ( -9.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	39	chr6:12012344-12012382	HIVEP1	HGNC:4920	ENSG00000095951	GGGCGGCGGCAGGGUGGCGGACGGAGCGGGGGACCGGGG
hsa_m5C_3040	chr20	4782575	4782576	-	ENST00000379400	C2837	m5C	C13	5'-GGCAUGCGGCCCCUGGCAUUUCGCCAAGG-3'	(((.....)))((((((.....))).))) ( -9.70)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr20:4782560-4782588	RASSF2	HGNC:9883	ENSG00000101265	GGCAUGCGGCCCCUGGCAUUUCGCCAAGG
hsa_m5C_3041	chr13	40665874	40665875	-	ENST00000379561	C767	m5C	C29	5'-GGGGGGCUGUGCGGGGACUUCCAGGGCCCGGAGGCGGG-3'	...(((((.((.((.....)))).)))))......... (-12.30)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	38	chr13:40665866-40665903	FOXO1	HGNC:3819	ENSG00000150907	GGGGGGCUGUGCGGGGACUUCCAGGGCCCGGAGGCGGG
hsa_m5C_3042	chr11	9440517	9440518	+	ENST00000379719	C2871	m5C	C12	5'-GGAGAUUCUGGCUAAGCAGGCUGG-3'	.......((((((.....)))))) ( -4.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	24	chr11:9440507-9440530	IPO7	HGNC:9852	ENSG00000205339	GGAGAUUCUGGCUAAGCAGGCUGG
hsa_m5C_3043	chr11	9440522	9440523	+	ENST00000379719	C2876	m5C	C17	5'-GGAGAUUCUGGCUAAGCAGGCUGG-3'	.......((((((.....)))))) ( -4.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	24	chr11:9440507-9440530	IPO7	HGNC:9852	ENSG00000205339	GGAGAUUCUGGCUAAGCAGGCUGG
hsa_m5C_3044	chr20	3784444	3784445	-	ENST00000379751	C2296	m5C	C4	5'-GGGCUCAGGGGACCAGGUGGGGCGGGUGGGG-3'	...((((.....((.....)).....)))). ( -4.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	31	chr20:3784418-3784448	CENPB	HGNC:1852	ENSG00000125817	GGGCUCAGGGGACCAGGUGGGGCGGGUGGGG
hsa_m5C_3045	chr20	3784526	3784527	-	ENST00000379751	C2214	m5C	C13	5'-GGUCACCUCGGCCGGGCCCGGGGCUGAGG-3'	.....((((((((........)))))))) (-15.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr20:3784511-3784539	CENPB	HGNC:1852	ENSG00000125817	GGUCACCUCGGCCGGGCCCGGGGCUGAGG
hsa_m5C_3046	chr6	7910732	7910733	-	ENST00000379757	C56	m5C	C9	5'-GGCCCGGCCGGCGG-3'	.(((.....))).. ( -3.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	14	chr6:7910728-7910741	TXNDC5	HGNC:21073	ENSG00000239264	GGCCCGGCCGGCGG
hsa_m5C_3047	chr6	7910679	7910680	-	ENST00000379757	C109	m5C	C10	5'-GGCGGCGGGCGCUGGGGCGCCCGGG-3'	.....(((((((....))))))).. (-15.00)	bulge	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	25	chr6:7910665-7910689	TXNDC5	HGNC:21073	ENSG00000239264	GGCGGCGGGCGCUGGGGCGCCCGGG
hsa_m5C_3048	chr6	7582891	7582892	+	ENST00000379802	C5875	m5C	C9	5'-GGAGGAGGCUAUUAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	16	chr6:7582884-7582899	DSP	HGNC:3052	ENSG00000096696	GGAGGAGGCUAUUAGG
hsa_m5C_3049	chr6	7579718	7579719	+	ENST00000379802	C3774	m5C	C12	5'-GGUUGAGGGUUCUACUGCAGGAAGAAGG-3'	..(((.((......)).)))........ ( -1.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr6:7579708-7579735	DSP	HGNC:3052	ENSG00000096696	GGUUGAGGGUUCUACUGCAGGAAGAAGG
hsa_m5C_3050	chr20	3679520	3679521	-	ENST00000379861	C390	m5C	C17	5'-GGUCCUGGAUGGACAACCCUGG-3'	.((((.....))))........ ( -5.70)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr20:3679516-3679537	ADAM33	HGNC:15478	ENSG00000149451	GGUCCUGGAUGGACAACCCUGG
hsa_m5C_3051	chr5	95794872	95794873	+	ENST00000379982	C3882	m5C	C12	5'-GGAGGCUGAGGCAAGUGG-3'	....(((......))).. ( -1.00)	loop	mRNA	293T;frontal_cortex,liver,lung,Muscle,Testis,T24;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	38168991;28418038;22344696	18	chr5:95794862-95794879	RHOBTB3	HGNC:18757	ENSG00000164292	GGAGGCUGAGGCAAGUGG
hsa_m5C_3052	chr12	56229508	56229509	+	ENST00000380198	C1430	m5C	C17	5'-GGGAAGCCGAGGUGGGCGGAUCACCUGAGG-3'	((....)).((((((.....)))))).... ( -8.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr12:56229493-56229522	NABP2	HGNC:28412	ENSG00000139579	GGGAAGCCGAGGUGGGCGGAUCACCUGAGG
hsa_m5C_3053	chr16	30893992	30893993	-	ENST00000380317	C310	m5C	C4	5'-GGACGGGAGGCGG-3'	...((.....)). ( -0.50)	loop	mRNA	Testis;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;38168991	38168991	13	chr16:30893984-30893996	BCL7C	HGNC:1006	ENSG00000099385	GGACGGGAGGCGG
hsa_m5C_3054	chr20	3046096	3046097	+	ENST00000380325	C46	m5C	C6	5'-GGGCGCGGGGACCCCGUGCAGGCCCCGG-3'	(((((((((...)))))....))))... (-12.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr20:3046092-3046119	MRPS26	HGNC:14045	ENSG00000125901	GGGCGCGGGGACCCCGUGCAGGCCCCGG
hsa_m5C_3055	chr20	3046114	3046115	+	ENST00000380325	C64	m5C	C24	5'-GGGCGCGGGGACCCCGUGCAGGCCCCGG-3'	(((((((((...)))))....))))... (-12.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr20:3046092-3046119	MRPS26	HGNC:14045	ENSG00000125901	GGGCGCGGGGACCCCGUGCAGGCCCCGG
hsa_m5C_3056	chr17	7559082	7559083	+	ENST00000380535	C792	m5C	C7	5'-GGCCUCCAGGCAACAUGGGGGG-3'	..((((((.......)))))). ( -8.90)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	22	chr17:7559077-7559098	TNFSF13	HGNC:11928	ENSG00000161955	GGCCUCCAGGCAACAUGGGGGG
hsa_m5C_3057	chr13	30307406	30307407	-	ENST00000380615	C145	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969	11	chr13:30307405-30307415	KATNAL1	HGNC:28361	ENSG00000102781	GGCGGCGGCGG
hsa_m5C_3058	chrX	12823971	12823972	+	ENST00000380668	C2219	m5C	C10	5'-GGGGUGGACCUGG-3'	(((.....))).. ( -2.40)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	13	chrX:12823963-12823975	PRPS2	HGNC:9465	ENSG00000101911	GGGGUGGACCUGG
hsa_m5C_3059	chr13	29850542	29850543	-	ENST00000380680	C75	m5C	C12	5'-GGAGGCGGCCGCGG-3'	((......)).... ( -0.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	14	chr13:29850541-29850554	UBL3	HGNC:12504	ENSG00000122042	GGAGGCGGCCGCGG
hsa_m5C_3060	chr19	10420603	10420604	+	ENST00000380702	C67	m5C	C11	5'-GGCCCGGGGGCGAUUGG-3'	.(((....)))...... ( -3.70)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	17	chr19:10420594-10420610	PDE4A	HGNC:8780	ENSG00000065989	GGCCCGGGGGCGAUUGG
hsa_m5C_3061	chr9	15460534	15460535	+	ENST00000380821	C1909	m5C	C11	5'-GGAUUGCAGGCACCUGGCACCAUGCCUGG-3'	......((((((..((....)))))))). ( -8.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	29	chr9:15460525-15460553	SNAPC3	HGNC:11136	ENSG00000164975	GGAUUGCAGGCACCUGGCACCAUGCCUGG
hsa_m5C_3062	chr9	15460536	15460537	+	ENST00000380821	C1911	m5C	C13	5'-GGAUUGCAGGCACCUGGCACCAUGCCUGG-3'	......((((((..((....)))))))). ( -8.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	29	chr9:15460525-15460553	SNAPC3	HGNC:11136	ENSG00000164975	GGAUUGCAGGCACCUGGCACCAUGCCUGG
hsa_m5C_3063	chr9	15460537	15460538	+	ENST00000380821	C1912	m5C	C14	5'-GGAUUGCAGGCACCUGGCACCAUGCCUGG-3'	......((((((..((....)))))))). ( -8.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	29	chr9:15460525-15460553	SNAPC3	HGNC:11136	ENSG00000164975	GGAUUGCAGGCACCUGGCACCAUGCCUGG
hsa_m5C_3064	chr10	3139000	3139001	-	ENST00000380989	C2892	m5C	C15	5'-GGGAAGGCUGUCGACUGGGCUAAGUCUGG-3'	....((((((((.....)))..))))).. ( -6.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr10:3138987-3139015	PITRM1	HGNC:17663	ENSG00000107959	GGGAAGGCUGUCGACUGGGCUAAGUCUGG
hsa_m5C_3065	chr22	46793732	46793733	+	ENST00000380995	C659	m5C	C8	5'-GGAGGGGCCAGG-3'	((.....))... ( -0.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	12	chr22:46793726-46793737	TBC1D22A	HGNC:1309	ENSG00000054611	GGAGGGGCCAGG
hsa_m5C_3066	chr5	65668205	65668206	-	ENST00000381007	C3170	m5C	C7	5'-GGGAGGCCAAGGCAGG-3'	((....))........ ( -1.60)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	16	chr5:65668197-65668212	SGTB	HGNC:23567	ENSG00000197860	GGGAGGCCAAGGCAGG
hsa_m5C_3067	chr5	65668204	65668205	-	ENST00000381007	C3171	m5C	C8	5'-GGGAGGCCAAGGCAGG-3'	((....))........ ( -1.60)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	16	chr5:65668197-65668212	SGTB	HGNC:23567	ENSG00000197860	GGGAGGCCAAGGCAGG
hsa_m5C_3068	chr5	65668199	65668200	-	ENST00000381007	C3176	m5C	C13	5'-GGGAGGCCAAGGCAGG-3'	((....))........ ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	16	chr5:65668197-65668212	SGTB	HGNC:23567	ENSG00000197860	GGGAGGCCAAGGCAGG
hsa_m5C_3069	chr5	65149534	65149535	-	ENST00000381055	C6512	m5C	C9	5'-GGCUGAUGCUGGAAGAGGAGG-3'	(((....)))........... ( -2.20)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr5:65149523-65149543	ADAMTS6	HGNC:222	ENSG00000049192	GGCUGAUGCUGGAAGAGGAGG
hsa_m5C_3070	chr4	57015547	57015548	+	ENST00000381227	C2260	m5C	C18	5'-GGAGAUUCGGAUCUAUACGGAUGCAGG-3'	....(((((........)))))..... ( -4.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	27	chr4:57015531-57015557	POLR2B	HGNC:9188	ENSG00000047315	GGAGAUUCGGAUCUAUACGGAUGCAGG
hsa_m5C_3071	chr4	56978917	56978918	+	ENST00000381227	C346	m5C	C5	5'-GGCGCUGCUGGCUUCUGGGCGG-3'	....(((((........))))) ( -4.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr4:56978914-56978935	POLR2B	HGNC:9188	ENSG00000047315	GGCGCUGCUGGCUUCUGGGCGG
hsa_m5C_3072	chr4	57024889	57024890	+	ENST00000381227	C3382	m5C	C11	5'-GGGAAG^GUAUCGGCUAACAAGG-3'	.....(((....)))....... ( -0.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr4:57024107-57024112;57024886-57024901	POLR2B	HGNC:9188	ENSG00000047315	GGGAAGGUAUCGGCUAACAAGG
hsa_m5C_3073	chr2	18560324	18560325	-	ENST00000381249	C329	m5C	C6	5'-GGAGGCGGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	11	chr2:18560320-18560330	RDH14	HGNC:19979	ENSG00000240857	GGAGGCGGCGG
hsa_m5C_3074	chr2	18560321	18560322	-	ENST00000381249	C332	m5C	C9	5'-GGAGGCGGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	11	chr2:18560320-18560330	RDH14	HGNC:19979	ENSG00000240857	GGAGGCGGCGG
hsa_m5C_3075	chr9	6758043	6758044	+	ENST00000381306	C389	m5C	C20	5'-GGGAGGGUGAGGCGCGGCGCAGUGAUCGGGCGGCCGGG-3'	.....(((...((.(((........))).)).)))... ( -8.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	38	chr9:6758025-6758062	KDM4C	HGNC:17071	ENSG00000107077	GGGAGGGUGAGGCGCGGCGCAGUGAUCGGGCGGCCGGG
hsa_m5C_3076	chr4	55396082	55396083	+	ENST00000381334	C127	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	11	chr4:55396078-55396088	TMEM165	HGNC:30760	ENSG00000134851	GGCGGCGGCGG
hsa_m5C_3077	chr5	54518741	54518742	+	ENST00000381410	C984	m5C	C11	5'-GGUGCUGGGGCCCUAUGG-3'	((.((....))))..... ( -2.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	18	chr5:54518732-54518749	SNX18	HGNC:19245	ENSG00000178996	GGUGCUGGGGCCCUAUGG
hsa_m5C_3078	chr5	54518742	54518743	+	ENST00000381410	C985	m5C	C12	5'-GGUGCUGGGGCCCUAUGG-3'	((.((....))))..... ( -2.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	18	chr5:54518732-54518749	SNX18	HGNC:19245	ENSG00000178996	GGUGCUGGGGCCCUAUGG
hsa_m5C_3079	chr4	52038265	52038266	-	ENST00000381431	C34	m5C	C28	5'-GGGCGGGGAGCUCGGCGGCGGCGGGCGCGGG-3'	((((.....)))).(((........)))... ( -9.40)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	31	chr4:52038263-52038293	SGCB	HGNC:10806	ENSG00000163069	GGGCGGGGAGCUCGGCGGCGGCGGGCGCGGG
hsa_m5C_3080	chr16	19118363	19118364	+	ENST00000381440	C4401	m5C	C6	5'-GGAGGCUAAGGCAGG-3'	....((....))... ( -1.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr16:19118359-19118373	ITPRIPL2	HGNC:27257	ENSG00000205730	GGAGGCUAAGGCAGG
hsa_m5C_3081	chr16	19118324	19118325	+	ENST00000381440	C4362	m5C	C3	5'-GGCGUGGUGGCGG-3'	.((......)).. ( -2.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	13	chr16:19118323-19118335	ITPRIPL2	HGNC:27257	ENSG00000205730	GGCGUGGUGGCGG
hsa_m5C_3082	chr16	19118332	19118333	+	ENST00000381440	C4370	m5C	C11	5'-GGCGUGGUGGCGG-3'	.((......)).. ( -2.00)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	13	chr16:19118323-19118335	ITPRIPL2	HGNC:27257	ENSG00000205730	GGCGUGGUGGCGG
hsa_m5C_3083	chr16	19115842	19115843	+	ENST00000381440	C1880	m5C	C8	5'-GGUGGGGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	10	chr16:19115836-19115845	ITPRIPL2	HGNC:27257	ENSG00000205730	GGUGGGGCGG
hsa_m5C_3084	chr20	2144255	2144256	+	ENST00000381482	C2170	m5C	C10	5'-GGAACGGGGCGUGAGGACACAAGG-3'	..........(((....))).... ( -1.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	24	chr20:2144247-2144270	STK35	HGNC:16254	ENSG00000125834	GGAACGGGGCGUGAGGACACAAGG
hsa_m5C_3085	chrX	1309786	1309787	+	ENST00000381524	C1697	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	liver	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chrX:1309782-1309796	CSF2RA	HGNC:2435	ENSG00000198223	GGAGGCUGAGGCAGG
hsa_m5C_3086	chrX	1309792	1309793	+	ENST00000381524	C1703	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	liver	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chrX:1309782-1309796	CSF2RA	HGNC:2435	ENSG00000198223	GGAGGCUGAGGCAGG
hsa_m5C_3087	chr9	4985499	4985500	+	ENST00000381652	C229	m5C	C25	5'-GGGAGCUGAGCCCACACUGGAGGGCCCCCGAGGG-3'	(((.(((....(((...)))..))).)))..... (-10.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	34	chr9:4985476-4985509	JAK2	HGNC:6192	ENSG00000096968	GGGAGCUGAGCCCACACUGGAGGGCCCCCGAGGG
hsa_m5C_3088	chrX	299523	299524	+	ENST00000381657	C1486	m5C	C7	5'-GGGAGGCCGAGGUGGG-3'	((....))........ ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	16	chrX:299518-299533	PLCXD1	HGNC:23148	ENSG00000182378	GGGAGGCCGAGGUGGG
hsa_m5C_3089	chrX	299524	299525	+	ENST00000381657	C1487	m5C	C8	5'-GGGAGGCCGAGGUGGG-3'	((....))........ ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	16	chrX:299518-299533	PLCXD1	HGNC:23148	ENSG00000182378	GGGAGGCCGAGGUGGG
hsa_m5C_3090	chr19	4523719	4523720	-	ENST00000381848	C1281	m5C	C25	5'-GGCGGACCUGGUGGACGAGGUCAUCGGGG-3'	......((((((((......)))))))). ( -9.80)	loop	mRNA	heart,liver,lung,Muscle;heart	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	29	chr19:4523716-4523744	PLIN5	HGNC:33196	ENSG00000214456	GGCGGACCUGGUGGACGAGGUCAUCGGGG
hsa_m5C_3091	chr9	4662856	4662857	+	ENST00000381883	C564	m5C	C16	5'-GGAGCGACAGCUGGGCCGGGCGCGAGG-3'	(((((....)))...)).......... ( -3.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	27	chr9:4662842-4662868	PLPP6	HGNC:23682	ENSG00000205808	GGAGCGACAGCUGGGCCGGGCGCGAGG
hsa_m5C_3092	chr9	4662857	4662858	+	ENST00000381883	C565	m5C	C17	5'-GGAGCGACAGCUGGGCCGGGCGCGAGG-3'	(((((....)))...)).......... ( -3.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	27	chr9:4662842-4662868	PLPP6	HGNC:23682	ENSG00000205808	GGAGCGACAGCUGGGCCGGGCGCGAGG
hsa_m5C_3093	chr9	4662861	4662862	+	ENST00000381883	C569	m5C	C21	5'-GGAGCGACAGCUGGGCCGGGCGCGAGG-3'	(((((....)))...)).......... ( -3.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	27	chr9:4662842-4662868	PLPP6	HGNC:23682	ENSG00000205808	GGAGCGACAGCUGGGCCGGGCGCGAGG
hsa_m5C_3094	chr9	4118792	4118793	-	ENST00000381971	C1431	m5C	C11	5'-GGAGUGGUCCCAGGGCUACAGGG-3'	...((((((....)))))).... ( -7.40)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr9:4118781-4118803	GLIS3	HGNC:28510	ENSG00000107249	GGAGUGGUCCCAGGGCUACAGGG
hsa_m5C_3095	chr5	34929838	34929839	+	ENST00000382021	C247	m5C	C3	5'-GGCGCUGGGGGUGCGG-3'	.(((((...))))).. ( -5.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	16	chr5:34929837-34929852	DNAJC21	HGNC:27030	ENSG00000168724	GGCGCUGGGGGUGCGG
hsa_m5C_3096	chr15	43456365	43456366	-	ENST00000382044	C2355	m5C	C14	5'-GGAACAUAAGGAACAGGAAGCUUGG-3'	.............((((...)))). ( -1.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr15:43456355-43456379	TP53BP1	HGNC:11999	ENSG00000067369	GGAACAUAAGGAACAGGAAGCUUGG
hsa_m5C_3097	chr15	43493135	43493136	-	ENST00000382044	C21	m5C	C9	5'-GGUGGCGGCGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	11	chr15:43493134-43493144	TP53BP1	HGNC:11999	ENSG00000067369	GGUGGCGGCGG
hsa_m5C_3098	chr13	23889353	23889354	-	ENST00000382172	C47	m5C	C11	5'-GGGCAGGGAUCUGCGUUGGAGGAAGGG-3'	..((((....))))............. ( -5.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	27	chr13:23889338-23889364	MIPEP	HGNC:7104	ENSG00000027001	GGGCAGGGAUCUGCGUUGGAGGAAGGG
hsa_m5C_3099	chr7	6642457	6642458	+	ENST00000382252	C609	m5C	C5	5'-GGAGCGGGCAGAGGACGGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr7:6642454-6642472	ZNF316	HGNC:13843	ENSG00000205903	GGAGCGGGCAGAGGACGGG
hsa_m5C_3100	chr16	2738310	2738311	-	ENST00000382313	C2494	m5C	C16	5'-GGCCUGGAGAUGUUACGGG-3'	..((((.........)))) ( -3.10)	bulge	lncRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	19	chr16:2738308-2738326	SRRM2-AS1	HGNC:44162	ENSG00000205913	GGCCUGGAGAUGUUACGGG
hsa_m5C_3101	chr22	30379012	30379013	-	ENST00000382363	C1819	m5C	C15	5'-GGCCUGGCUAGGACCAGAGG-3'	(((((....))).))..... ( -4.70)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr22:30379008-30379027	RNF215	HGNC:33434	ENSG00000099999	GGCCUGGCUAGGACCAGAGG
hsa_m5C_3102	chr7	5480681	5480682	-	ENST00000382368	C3385	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr7:5480673-5480687	FBXL18	HGNC:21874	ENSG00000155034	GGAGGCUGAGGCAGG
hsa_m5C_3103	chr7	5480675	5480676	-	ENST00000382368	C3391	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr7:5480673-5480687	FBXL18	HGNC:21874	ENSG00000155034	GGAGGCUGAGGCAGG
hsa_m5C_3104	chr7	5476583	5476584	-	ENST00000382368	C7483	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr7:5476575-5476589	FBXL18	HGNC:21874	ENSG00000155034	GGAGGCUGAGGCAGG
hsa_m5C_3105	chr7	5479503	5479504	-	ENST00000382368	C4563	m5C	C21	5'-GGCACCUGGAGACCACCAGGCGCGG-3'	.((.(((((......))))).)).. (-11.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr7:5479500-5479524	FBXL18	HGNC:21874	ENSG00000155034	GGCACCUGGAGACCACCAGGCGCGG
hsa_m5C_3106	chr7	5500620	5500621	-	ENST00000382368	C1783	m5C	C10	5'-GGCUCCGGGCUGGUCAAUAUCGG-3'	((((...))))............ ( -1.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	23	chr7:5500608-5500630	FBXL18	HGNC:21874	ENSG00000155034	GGCUCCGGGCUGGUCAAUAUCGG
hsa_m5C_3107	chr7	5500491	5500492	-	ENST00000382368	C1912	m5C	C12	5'-GGCUGAGGGACCUCAG^GCUGG-3'	(((((((....)))).))).. ( -6.50)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr7:5491445-5491449;5500488-5500503	FBXL18	HGNC:21874	ENSG00000155034	GGCUGAGGGACCUCAGGCUGG
hsa_m5C_3108	chr4	13544231	13544232	-	ENST00000382438	C277	m5C	C18	5'-GGGGAGAGGGACGCGGGCGCGUUGGG-3'	.........(((((....)))))... ( -5.50)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	26	chr4:13544224-13544249	NKX3-2	HGNC:951	ENSG00000109705	GGGGAGAGGGACGCGGGCGCGUUGGG
hsa_m5C_3109	chr4	8606750	8606751	+	ENST00000382480	C1358	m5C	C16	5'-G^GGUGCCGGCUACAACGGGUGGACGAGCGG-3'	...(((((.((((.....)))).)).))). ( -7.50)	loop	mRNA	Testis;HeLa	UBS-seq:(High);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;31061524;38168991	30	chr4:8606185-8606185;8606737-8606765	CPZ	HGNC:2333	ENSG00000109625	GGGUGCCGGCUACAACGGGUGGACGAGCGG
hsa_m5C_3110	chr4	4859775	4859776	+	ENST00000382723	C112	m5C	C21	5'-GGGGAGGGGCGGGAGGCGCGCGCGGG-3'	........(((.....)))....... ( -3.90)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	26	chr4:4859756-4859781	MSX1	HGNC:7391	ENSG00000163132	GGGGAGGGGCGGGAGGCGCGCGCGGG
hsa_m5C_3111	chr16	1445763	1445764	-	ENST00000382745	C3339	m5C	C15	5'-GGGGACCCCGGCCUCGAGG-3'	((((.......)))).... ( -3.90)	loop	mRNA	heart,liver,lung,Muscle,spleen,Testis,HeLa,T24;HeLa,rescue;HeLa,With in vitro transcribed m5C spike-ins;SRV-infected and -uninfected Jurkat;293T;HeLa,siControl;HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	38168991;31061524;30009162;28418038;30872485	19	chr16:1445760-1445778	CLCN7	HGNC:2025	ENSG00000103249	GGGGACCCCGGCCUCGAGG
hsa_m5C_3112	chr16	1450497	1450498	-	ENST00000382745	C1670	m5C	C9	5'-GGGGGCGGCG^AUCUGGGCGG-3'	.......((.......)).. ( -1.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	20	chr16:1449318-1449327;1450497-1450506	CLCN7	HGNC:2025	ENSG00000103249	GGGGGCGGCGAUCUGGGCGG
hsa_m5C_3113	chr21	32314437	32314438	-	ENST00000382751	C7398	m5C	C6	5'-GGAGGCCAAGGCGG-3'	....((....)).. ( -1.70)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr21:32314430-32314443	URB1	HGNC:17344	ENSG00000142207	GGAGGCCAAGGCGG
hsa_m5C_3114	chr21	32314436	32314437	-	ENST00000382751	C7399	m5C	C7	5'-GGAGGCCAAGGCGG-3'	....((....)).. ( -1.70)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr21:32314430-32314443	URB1	HGNC:17344	ENSG00000142207	GGAGGCCAAGGCGG
hsa_m5C_3115	chr4	1718565	1718566	-	ENST00000382936	C752	m5C	C3	5'-GGCCCCUGAGGCCUGGCGG-3'	((((.....))))...... ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr4:1718550-1718568	TMEM129	HGNC:25137	ENSG00000168936	GGCCCCUGAGGCCUGGCGG
hsa_m5C_3116	chr14	20990006	20990007	+	ENST00000382985	C28	m5C	C11	5'-GGAGCCAUGGCGGCGG-3'	...(((.....))).. ( -3.90)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr14:20989997-20990012	METTL17	HGNC:19280	ENSG00000165792	GGAGCCAUGGCGGCGG
hsa_m5C_3117	chr3	15332524	15332525	-	ENST00000383791	C62	m5C	C11	5'-GGUGUCGGCCCCGGCGG-3'	..(((((....))))). ( -4.00)	loop	mRNA	293T;HeLa	UBS-seq:(High);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	31061524;38168991	17	chr3:15332519-15332535	SH3BP5	HGNC:10827	ENSG00000131370	GGUGUCGGCCCCGGCGG
hsa_m5C_3118	chr7	100889281	100889282	-	ENST00000388761	C434	m5C	C6	5'-GGCGGCCCUGGAGG-3'	NA	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	14	chr7:100889274-100889287	UFSP1	HGNC:33821	ENSG00000176125	GGCGGCCCUGGAGG
hsa_m5C_3119	chr15	101053023	101053024	+	ENST00000388948	C4009	m5C	C16	5'-GGCCCGGUACCAGGGCCAGCCUGUGG-3'	(((((.......)))))......... (-11.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr15:101053009-101053034	LRRK1	HGNC:18608	ENSG00000154237	GGCCCGGUACCAGGGCCAGCCUGUGG
hsa_m5C_3120	chr7	55794903	55794904	-	ENST00000388975	C2388	m5C	C7	5'-GGGAGGCCGAGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr7:55794896-55794910	SEPTIN14	HGNC:33280	ENSG00000154997	GGGAGGCCGAGGUGG
hsa_m5C_3121	chr7	55794902	55794903	-	ENST00000388975	C2389	m5C	C8	5'-GGGAGGCCGAGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr7:55794896-55794910	SEPTIN14	HGNC:33280	ENSG00000154997	GGGAGGCCGAGGUGG
hsa_m5C_3122	chr5	113014475	113014476	+	ENST00000389063	C2391	m5C	C12	5'-GGAUGAUGGAGCGAGAAGGGAAGGG-3'	NA	bulge	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	25	chr5:113014465-113014489	DCP2	HGNC:24452	ENSG00000172795	GGAUGAUGGAGCGAGAAGGGAAGGG
hsa_m5C_3123	chr12	31590826	31590827	-	ENST00000389082	C310	m5C	C9	5'-GGGAUGAGCGGGAGCUGCGCGGCGCCCGGCCCGGGCUCGGG-3'	........((((.(((....))).)))).((((....)))) (-15.80)	loop	mRNA	293T;Testis;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;38168991	41	chr12:31590795-31590835	DENND5B	HGNC:28338	ENSG00000170456	GGGAUGAGCGGGAGCUGCGCGGCGCCCGGCCCGGGCUCGGG
hsa_m5C_3124	chr8	23360260	23360261	-	ENST00000389131	C610	m5C	C18	5'-GGCAAGGGAGAAG^GGCCCAUCUGG-3'	.....(((.......)))...... ( -3.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr8:23360255-23360265;23367997-23368009	LOXL2	HGNC:6666	ENSG00000134013	GGCAAGGGAGAAGGGCCCAUCUGG
hsa_m5C_3125	chr17	7315181	7315182	-	ENST00000389167	C162	m5C	C15	5'-GGGCGGCGAGCGGGCCGGGCGGACGGG-3'	...((((......)))).......... ( -7.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	27	chr17:7315170-7315196	GPS2	HGNC:4550	ENSG00000132522	GGGCGGCGAGCGGGCCGGGCGGACGGG
hsa_m5C_3126	chr17	7315180	7315181	-	ENST00000389167	C163	m5C	C16	5'-GGGCGGCGAGCGGGCCGGGCGGACGGG-3'	...((((......)))).......... ( -7.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	27	chr17:7315170-7315196	GPS2	HGNC:4550	ENSG00000132522	GGGCGGCGAGCGGGCCGGGCGGACGGG
hsa_m5C_3127	chr16	1365111	1365112	-	ENST00000389221	C3343	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr16:1365103-1365117	UNKL	HGNC:14184	ENSG00000059145	GGAGGCUGAGGCAGG
hsa_m5C_3128	chr16	1364686	1364687	-	ENST00000389221	C3768	m5C	C14	5'-GGCCUGGAGCACACGGGG-3'	..((((.......)))). ( -4.70)	loop	mRNA	HeLa,siControl;T24;HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	28418038;31061524;38168991	18	chr16:1364683-1364700	UNKL	HGNC:14184	ENSG00000059145	GGCCUGGAGCACACGGGG
hsa_m5C_3129	chr17	4595279	4595280	+	ENST00000389313	C1019	m5C	C13	5'-GGAGGCGCAGGCCCGG-3'	...(((....)))... ( -4.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr17:4595268-4595283	SMTNL2	HGNC:24764	ENSG00000188176	GGAGGCGCAGGCCCGG
hsa_m5C_3130	chr5	151065130	151065131	-	ENST00000389378	C206	m5C	C3	5'-GG^CCAGGCGGGCACCACGGCAGGGG-3'	.(((.((......))..)))..... ( -4.80)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	25	chr5:151065109-151065131;151080880-151080881	TNIP1	HGNC:16903	ENSG00000145901	GGCCAGGCGGGCACCACGGCAGGGG
hsa_m5C_3131	chr12	131961045	131961046	+	ENST00000389561	C557	m5C	C3	5'-GGCCGGGGCAGG-3'	..((......)) ( -0.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	12	chr12:131961044-131961055	EP400	HGNC:11958	ENSG00000183495	GGCCGGGGCAGG
hsa_m5C_3132	chr12	131961046	131961047	+	ENST00000389561	C558	m5C	C4	5'-GGCCGGGGCAGG-3'	..((......)) ( -0.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	12	chr12:131961044-131961055	EP400	HGNC:11958	ENSG00000183495	GGCCGGGGCAGG
hsa_m5C_3133	chr12	131961051	131961052	+	ENST00000389561	C563	m5C	C9	5'-GGCCGGGGCAGG-3'	..((......)) ( -0.40)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	12	chr12:131961044-131961055	EP400	HGNC:11958	ENSG00000183495	GGCCGGGGCAGG
hsa_m5C_3134	chr12	132077525	132077526	+	ENST00000389561	C9355	m5C	C10	5'-GGUGGUGACCACGGCGUCGG-3'	.((((...))))........ ( -3.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr12:132077517-132077536	EP400	HGNC:11958	ENSG00000183495	GGUGGUGACCACGGCGUCGG
hsa_m5C_3135	chr3	72888415	72888416	+	ENST00000389617	C371	m5C	C19	5'-GGGGCCGGGCGCCCUCCCCGGGGCCAGCCCGGG-3'	....(((((((((((....)))))..)))))). (-20.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	33	chr3:72888398-72888430	GXYLT2	HGNC:33383	ENSG00000172986	GGGGCCGGGCGCCCUCCCCGGGGCCAGCCCGGG
hsa_m5C_3136	chr15	41481849	41481850	+	ENST00000389629	C3317	m5C	C13	5'-GGGAGGCCUAGGCGG-3'	.....((....)).. ( -1.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr15:41481838-41481852	RTF1	HGNC:28996	ENSG00000137815	GGGAGGCCUAGGCGG
hsa_m5C_3137	chr6	99349414	99349415	-	ENST00000389677	C260	m5C	C4	5'-GGGCGGCGCGGGCCCUGGGAGGG-3'	((((.......))))........ ( -7.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969	23	chr6:99349396-99349418	FAXC	HGNC:20742	ENSG00000146267	GGGCGGCGCGGGCCCUGGGAGGG
hsa_m5C_3138	chr6	99349411	99349412	-	ENST00000389677	C263	m5C	C7	5'-GGGCGGCGCGGGCCCUGGGAGGG-3'	((((.......))))........ ( -7.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr6:99349396-99349418	FAXC	HGNC:20742	ENSG00000146267	GGGCGGCGCGGGCCCUGGGAGGG
hsa_m5C_3139	chr6	99349409	99349410	-	ENST00000389677	C265	m5C	C9	5'-GGGCGGCGCGGGCCCUGGGAGGG-3'	((((.......))))........ ( -7.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr6:99349396-99349418	FAXC	HGNC:20742	ENSG00000146267	GGGCGGCGCGGGCCCUGGGAGGG
hsa_m5C_3140	chr13	46553512	46553513	+	ENST00000389797	C344	m5C	C9	5'-GGAGGAACCGGCGCCCCCG-3'	((.((........)).)). ( -3.80)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	19	chr13:46553505-46553523	LRCH1	HGNC:20309	ENSG00000136141	GGAGGAACCGGCGCCCCCG
hsa_m5C_3141	chr14	91313414	91313415	-	ENST00000389857	C2531	m5C	C3	5'-GGCGGGACCUGGAGG-3'	NA	loop	mRNA	spleen	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	15	chr14:91313403-91313417	CCDC88C	HGNC:19967	ENSG00000015133	GGCGGGACCUGGAGG
hsa_m5C_3142	chr7	5620556	5620557	-	ENST00000389902	C5267	m5C	C5	5'-GGCACGGGGGACCACAGG-3'	.....((....))..... ( -1.70)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	18	chr7:5620544-5620561	RNF216	HGNC:21698	ENSG00000011275	GGCACGGGGGACCACAGG
hsa_m5C_3143	chr7	5621402	5621403	-	ENST00000389902	C4421	m5C	C8	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr7:5621396-5621410	RNF216	HGNC:21698	ENSG00000011275	GGGAGGCCGAGGCGG
hsa_m5C_3144	chr7	5621397	5621398	-	ENST00000389902	C4426	m5C	C13	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr7:5621396-5621410	RNF216	HGNC:21698	ENSG00000011275	GGGAGGCCGAGGCGG
hsa_m5C_3145	chrX	386718	386719	-	ENST00000390665	C189	m5C	C25	5'-GGGGCGGGGCGGGGCGCGGGCGUCCGGGG-3'	.(((((..(((...)))...))))).... (-10.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;RNAfold:(High)	RMVar database	28418038	29	chrX:386715-386743	PPP2R3B	HGNC:13417	ENSG00000167393	GGGGCGGGGCGGGGCGCGGGCGUCCGGGG
hsa_m5C_3146	chr19	46746354	46746355	-	ENST00000391910	C527	m5C	C16	5'-GGCUCAGGCGCGGGCCCUGG-3'	(((((......))))).... ( -7.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr19:46746351-46746370	STRN4	HGNC:15721	ENSG00000090372	GGCUCAGGCGCGGGCCCUGG
hsa_m5C_3147	chr19	46720552	46720553	-	ENST00000391910	C2783	m5C	C13	5'-GGGGUGUAGGGCCGGGCAGGUGGG-3'	..(((.....)))........... ( -2.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	24	chr19:46720542-46720565	STRN4	HGNC:15721	ENSG00000090372	GGGGUGUAGGGCCGGGCAGGUGGG
hsa_m5C_3148	chr1	209623068	209623069	-	ENST00000391911	C2859	m5C	C14	5'-GGGGUGUCCUUCCCAGGGCCGGUGGGGCCUUCUUGAUGGCGGG-3'	((((......))))((((((.....))))))............ (-14.90)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	43	chr1:209623040-209623082	LAMB3	HGNC:6490	ENSG00000196878	GGGGUGUCCUUCCCAGGGCCGGUGGGGCCUUCUUGAUGGCGGG
hsa_m5C_3149	chr19	45364872	45364873	-	ENST00000391945	C592	m5C	C17	5'-GGCCCUGGGGCGGCGCCAGG-3'	...(((((.......))))) ( -7.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr19:45364870-45364889	ERCC2	HGNC:3434	ENSG00000104884	GGCCCUGGGGCGGCGCCAGG
hsa_m5C_3150	chr19	45350640	45350641	-	ENST00000391945	C3304	m5C	C4	5'-GGGCCUGGGGAGGGGCCGGGG-3'	.(((((......))))).... ( -9.40)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	21	chr19:45350624-45350644	ERCC2	HGNC:3434	ENSG00000104884	GGGCCUGGGGAGGGGCCGGGG
hsa_m5C_3151	chr19	45350639	45350640	-	ENST00000391945	C3305	m5C	C5	5'-GGGCCUGGGGAGGGGCCGGGG-3'	.(((((......))))).... ( -9.40)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	21	chr19:45350624-45350644	ERCC2	HGNC:3434	ENSG00000104884	GGGCCUGGGGAGGGGCCGGGG
hsa_m5C_3152	chr1	202493182	202493183	+	ENST00000391959	C2347	m5C	C24	5'-GGUCGAGGGCAGAGAGGCAAGCUCAGG-3'	......((((..........))))... ( -3.50)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr1:202493160-202493186	PPP1R12B	HGNC:7619	ENSG00000077157	GGUCGAGGGCAGAGAGGCAAGCUCAGG
hsa_m5C_3153	chr2	241235175	241235176	-	ENST00000391975	C3317	m5C	C9	5'-GGACCGGGCCAAGGCUGG-3'	...(((.((....))))) ( -3.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	18	chr2:241235167-241235184	HDLBP	HGNC:4857	ENSG00000115677	GGACCGGGCCAAGGCUGG
hsa_m5C_3154	chr2	241235169	241235170	-	ENST00000391975	C3323	m5C	C15	5'-GGACCGGGCCAAGGCUGG-3'	...(((.((....))))) ( -3.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	18	chr2:241235167-241235184	HDLBP	HGNC:4857	ENSG00000115677	GGACCGGGCCAAGGCUGG
hsa_m5C_3155	chr2	241239649	241239650	-	ENST00000391975	C2790	m5C	C12	5'-GGCGCCAAGGACUGUGUGGAGG-3'	.((((........))))..... ( -2.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr2:241239640-241239661	HDLBP	HGNC:4857	ENSG00000115677	GGCGCCAAGGACUGUGUGGAGG
hsa_m5C_3156	chr19	41264671	41264672	+	ENST00000392006	C301	m5C	C7	5'-GGGCGACCCGGGCACAUCAACGAGGAGGUCG-3'	.(((..((((..........)).))..))). ( -6.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	31	chr19:41264666-41264696	HNRNPUL1	HGNC:17011	ENSG00000105323	GGGCGACCCGGGCACAUCAACGAGGAGGUCG
hsa_m5C_3157	chr19	41264672	41264673	+	ENST00000392006	C302	m5C	C8	5'-GGGCGACCCGGGCACAUCAACGAGGAGGUCG-3'	.(((..((((..........)).))..))). ( -6.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	31	chr19:41264666-41264696	HNRNPUL1	HGNC:17011	ENSG00000105323	GGGCGACCCGGGCACAUCAACGAGGAGGUCG
hsa_m5C_3158	chr19	41264673	41264674	+	ENST00000392006	C303	m5C	C9	5'-GGGCGACCCGGGCACAUCAACGAGGAGGUCG-3'	.(((..((((..........)).))..))). ( -6.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	31	chr19:41264666-41264696	HNRNPUL1	HGNC:17011	ENSG00000105323	GGGCGACCCGGGCACAUCAACGAGGAGGUCG
hsa_m5C_3159	chr2	232382637	232382638	+	ENST00000392027	C2503	m5C	C17	5'-GGGAGGCCGAGGUGGGCGGAUCACG-3'	((...(((......)))...))... ( -6.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	25	chr2:232382622-232382646	ALPP	HGNC:439	ENSG00000163283	GGGAGGCCGAGGUGGGCGGAUCACG
hsa_m5C_3160	chr19	40232930	40232931	-	ENST00000392038	C2636	m5C	C15	5'-GGGGUGGGGGUGGGCAUCUCUGGUACCUAUUGGGGUGGGGG-3'	((((((........)))))).....(((((....))))).. (-10.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	41	chr19:40232905-40232945	AKT2	HGNC:392	ENSG00000105221	GGGGUGGGGGUGGGCAUCUCUGGUACCUAUUGGGGUGGGGG
hsa_m5C_3161	chr2	202635268	202635269	+	ENST00000392238	C301	m5C	C17	5'-GGCCACGGCCGGGGGACCCGGG-3'	........(((((...))))). ( -8.30)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	22	chr2:202635253-202635274	FAM117B	HGNC:14440	ENSG00000138439	GGCCACGGCCGGGGGACCCGGG
hsa_m5C_3162	chr2	202635269	202635270	+	ENST00000392238	C302	m5C	C18	5'-GGCCACGGCCGGGGGACCCGGG-3'	........(((((...))))). ( -8.30)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	22	chr2:202635253-202635274	FAM117B	HGNC:14440	ENSG00000138439	GGCCACGGCCGGGGGACCCGGG
hsa_m5C_3163	chr2	202635270	202635271	+	ENST00000392238	C303	m5C	C19	5'-GGCCACGGCCGGGGGACCCGGG-3'	........(((((...))))). ( -8.30)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	22	chr2:202635253-202635274	FAM117B	HGNC:14440	ENSG00000138439	GGCCACGGCCGGGGGACCCGGG
hsa_m5C_3164	chr2	202635360	202635361	+	ENST00000392238	C393	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr2:202635359-202635369	FAM117B	HGNC:14440	ENSG00000138439	GGCGGCGGCGG
hsa_m5C_3165	chr2	202635363	202635364	+	ENST00000392238	C396	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr2:202635359-202635369	FAM117B	HGNC:14440	ENSG00000138439	GGCGGCGGCGG
hsa_m5C_3166	chr2	202635366	202635367	+	ENST00000392238	C399	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr2:202635359-202635369	FAM117B	HGNC:14440	ENSG00000138439	GGCGGCGGCGG
hsa_m5C_3167	chr2	202635477	202635478	+	ENST00000392238	C510	m5C	C3	5'-GGCGGCGGGAACGCGG-3'	....(((....))).. ( -4.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr2:202635476-202635491	FAM117B	HGNC:14440	ENSG00000138439	GGCGGCGGGAACGCGG
hsa_m5C_3168	chr2	202635488	202635489	+	ENST00000392238	C521	m5C	C14	5'-GGCGGCGGGAACGCGG-3'	....(((....))).. ( -4.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr2:202635476-202635491	FAM117B	HGNC:14440	ENSG00000138439	GGCGGCGGGAACGCGG
hsa_m5C_3169	chr19	30009288	30009289	+	ENST00000392271	C1280	m5C	C3	5'-GGCUUUAGGGGUUGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr19:30009287-30009301	URI1	HGNC:13236	ENSG00000105176	GGCUUUAGGGGUUGG
hsa_m5C_3170	chr19	29942458	29942459	+	ENST00000392271	C221	m5C	C8	5'-GGGCGGGCGCGCGGGCGCUGGG-3'	.....(((((....)))))... ( -8.40)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database;RMVar database	28418038;22344696	22	chr19:29942452-29942473	URI1	HGNC:13236	ENSG00000105176	GGGCGGGCGCGCGGGCGCUGGG
hsa_m5C_3171	chr19	29942460	29942461	+	ENST00000392271	C223	m5C	C10	5'-GGGCGGGCGCGCGGGCGCUGGG-3'	.....(((((....)))))... ( -8.40)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database;RMVar database	28418038;22344696	22	chr19:29942452-29942473	URI1	HGNC:13236	ENSG00000105176	GGGCGGGCGCGCGGGCGCUGGG
hsa_m5C_3172	chr19	29942462	29942463	+	ENST00000392271	C225	m5C	C12	5'-GGGCGGGCGCGCGGGCGCUGGG-3'	.....(((((....)))))... ( -8.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	22	chr19:29942452-29942473	URI1	HGNC:13236	ENSG00000105176	GGGCGGGCGCGCGGGCGCUGGG
hsa_m5C_3173	chr19	29942466	29942467	+	ENST00000392271	C229	m5C	C16	5'-GGGCGGGCGCGCGGGCGCUGGG-3'	.....(((((....)))))... ( -8.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	22	chr19:29942452-29942473	URI1	HGNC:13236	ENSG00000105176	GGGCGGGCGCGCGGGCGCUGGG
hsa_m5C_3174	chr2	191400815	191400816	+	ENST00000392318	C2682	m5C	C3	5'-GGCUUACUGGCUUGGAUCUAAG^G-3'	((((....))))........... ( -2.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr2:191400814-191400835;191402632-191402632	MYO1B	HGNC:7596	ENSG00000128641	GGCUUACUGGCUUGGAUCUAAGG
hsa_m5C_3175	chr19	18264720	18264721	-	ENST00000392413	C2978	m5C	C15	5'-GGCGCUGGUGAAGGCGCUGUCCUGG-3'	((((((......))))))....... ( -9.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr19:18264711-18264735	IQCN	HGNC:29350	ENSG00000130518	GGCGCUGGUGAAGGCGCUGUCCUGG
hsa_m5C_3176	chr19	18257689	18257690	-	ENST00000392413	C3753	m5C	C23	5'-GGGUGGAGCUGGGCAGCCGGGCCGGG-3'	...(((..((((....)))).))).. ( -7.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	26	chr19:18257687-18257712	IQCN	HGNC:29350	ENSG00000130518	GGGUGGAGCUGGGCAGCCGGGCCGGG
hsa_m5C_3177	chr6	125930121	125930122	+	ENST00000392477	C4352	m5C	C6	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr6:125930117-125930131	NCOA7	HGNC:21081	ENSG00000111912	GGAGGCCGAGGCAGG
hsa_m5C_3178	chr6	125930122	125930123	+	ENST00000392477	C4353	m5C	C7	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr6:125930117-125930131	NCOA7	HGNC:21081	ENSG00000111912	GGAGGCCGAGGCAGG
hsa_m5C_3179	chr2	176093071	176093072	+	ENST00000392539	C352	m5C	C21	5'-GGGGCGGGCGGCGGCGGCGGCAGCGG-3'	...((..((.((....)).)).)).. ( -8.90)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	26	chr2:176093052-176093077	HOXD13	HGNC:5136	ENSG00000128714	GGGGCGGGCGGCGGCGGCGGCAGCGG
hsa_m5C_3180	chr12	118016755	118016756	+	ENST00000392542	C35	m5C	C19	5'-GGUCUCAGGGUCAGGUCGCGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr12:118016738-118016758	RFC5	HGNC:9973	ENSG00000111445	GGUCUCAGGGUCAGGUCGCGG
hsa_m5C_3181	chr2	174486967	174486968	-	ENST00000392552	C62	m5C	C3	5'-GGCUGGGGGCGGG-3'	..(((....))). ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	13	chr2:174486958-174486970	GPR155	HGNC:22951	ENSG00000163328	GGCUGGGGGCGGG
hsa_m5C_3182	chr14	105248956	105248957	+	ENST00000392554	C425	m5C	C12	5'-GGCAGGAAGGCCGG-3'	(((......))).. ( -4.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	14	chr14:105248946-105248959	BTBD6	HGNC:19897	ENSG00000184887	GGCAGGAAGGCCGG
hsa_m5C_3183	chr14	105248814	105248815	+	ENST00000392554	C283	m5C	C11	5'-GGCGCGAGGGCGCGGGGCGCGG-3'	.((((....))))......... ( -7.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	22	chr14:105248805-105248826	BTBD6	HGNC:19897	ENSG00000184887	GGCGCGAGGGCGCGGGGCGCGG
hsa_m5C_3184	chr14	105248816	105248817	+	ENST00000392554	C285	m5C	C13	5'-GGCGCGAGGGCGCGGGGCGCGG-3'	.((((....))))......... ( -7.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	22	chr14:105248805-105248826	BTBD6	HGNC:19897	ENSG00000184887	GGCGCGAGGGCGCGGGGCGCGG
hsa_m5C_3185	chr17	75318992	75318993	-	ENST00000392562	C2812	m5C	C22	5'-GGAUCUGGCUUACAGGGGGGUCGG-3'	....(((((((......))))))) ( -5.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	24	chr17:75318991-75319014	GRB2	HGNC:4566	ENSG00000177885	GGAUCUGGCUUACAGGGGGGUCGG
hsa_m5C_3186	chr17	75319116	75319117	-	ENST00000392562	C2688	m5C	C11	5'-GGGUUGUGAGCCCCUUGGGGGUUCAGGG-3'	...((.((((((((...)))))))).)) (-13.00)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr17:75319100-75319127	GRB2	HGNC:4566	ENSG00000177885	GGGUUGUGAGCCCCUUGGGGGUUCAGGG
hsa_m5C_3187	chr2	165794157	165794158	-	ENST00000392701	C90	m5C	C9	5'-GGAGGCGGCGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	11	chr2:165794156-165794166	GALNT3	HGNC:4125	ENSG00000115339	GGAGGCGGCGG
hsa_m5C_3188	chr7	151277114	151277115	-	ENST00000392811	C338	m5C	C6	5'-GGGAGCGGGCGGCCGCGCUCCGGGCCGGGGUCCCGGGGG-3'	.((((((((...)).))))))...((((....))))... (-18.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	39	chr7:151277082-151277120	SMARCD3	HGNC:11108	ENSG00000082014	GGGAGCGGGCGGCCGCGCUCCGGGCCGGGGUCCCGGGGG
hsa_m5C_3189	chr7	151245612	151245613	-	ENST00000392811	C573	m5C	C19	5'-GGGCGCCCAUGGGCCCCCCGGGCUCCCCGUACAUGGG-3'	(((.((((..(((...))))))).))).......... (-15.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	37	chr7:151245595-151245631	SMARCD3	HGNC:11108	ENSG00000082014	GGGCGCCCAUGGGCCCCCCGGGCUCCCCGUACAUGGG
hsa_m5C_3190	chr10	119455156	119455157	+	ENST00000392870	C2210	m5C	C5	5'-GGGGCUGCCAGGGGAGACCCCGGGAGCCGGGG-3'	..((((.((.((((...)))))).)))).... (-18.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	32	chr10:119455153-119455184	GRK5	HGNC:4544	ENSG00000198873	GGGGCUGCCAGGGGAGACCCCGGGAGCCGGGG
hsa_m5C_3191	chr12	103785446	103785447	-	ENST00000392876	C1295	m5C	C11	5'-GGCUGGAGGACUGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	14	chr12:103785444-103785457	NT5DC3	HGNC:30826	ENSG00000111696	GGCUGGAGGACUGG
hsa_m5C_3192	chr16	90006102	90006103	-	ENST00000392973	C1459	m5C	C14	5'-GGGACACACGGGGCCCCCGGAUGCCUCUGG-3'	(((.((..((((...))))..))))).... (-10.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr16:90006087-90006116	DBNDD1	HGNC:28455	ENSG00000003249	GGGACACACGGGGCCCCCGGAUGCCUCUGG
hsa_m5C_3193	chr16	90006098	90006099	-	ENST00000392973	C1463	m5C	C18	5'-GGGACACACGGGGCCCCCGGAUGCCUCUGG-3'	(((.((..((((...))))..))))).... (-10.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr16:90006087-90006116	DBNDD1	HGNC:28455	ENSG00000003249	GGGACACACGGGGCCCCCGGAUGCCUCUGG
hsa_m5C_3194	chr16	89563337	89563338	+	ENST00000393099	C1181	m5C	C13	5'-GGCAAGGUUGGGCUGG-3'	(((........))).. ( -1.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	16	chr16:89563326-89563341	RPL13	HGNC:10303	ENSG00000167526	GGCAAGGUUGGGCUGG
hsa_m5C_3195	chr16	89564188	89564189	+	ENST00000393099	C2032	m5C	C6	5'-GGGUGCCGGUAUUGAGGCACCCAGG-3'	(((((((........)))))))... (-16.10)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr16:89564184-89564208	RPL13	HGNC:10303	ENSG00000167526	GGGUGCCGGUAUUGAGGCACCCAGG
hsa_m5C_3196	chr16	89564189	89564190	+	ENST00000393099	C2033	m5C	C7	5'-GGGUGCCGGUAUUGAGGCACCCAGG-3'	(((((((........)))))))... (-16.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	25	chr16:89564184-89564208	RPL13	HGNC:10303	ENSG00000167526	GGGUGCCGGUAUUGAGGCACCCAGG
hsa_m5C_3197	chr16	89564200	89564201	+	ENST00000393099	C2044	m5C	C18	5'-GGGUGCCGGUAUUGAGGCACCCAGG-3'	(((((((........)))))))... (-16.10)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr16:89564184-89564208	RPL13	HGNC:10303	ENSG00000167526	GGGUGCCGGUAUUGAGGCACCCAGG
hsa_m5C_3198	chr16	89564202	89564203	+	ENST00000393099	C2046	m5C	C20	5'-GGGUGCCGGUAUUGAGGCACCCAGG-3'	(((((((........)))))))... (-16.10)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr16:89564184-89564208	RPL13	HGNC:10303	ENSG00000167526	GGGUGCCGGUAUUGAGGCACCCAGG
hsa_m5C_3199	chr16	89564203	89564204	+	ENST00000393099	C2047	m5C	C21	5'-GGGUGCCGGUAUUGAGGCACCCAGG-3'	(((((((........)))))))... (-16.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	25	chr16:89564184-89564208	RPL13	HGNC:10303	ENSG00000167526	GGGUGCCGGUAUUGAGGCACCCAGG
hsa_m5C_3200	chr16	89564204	89564205	+	ENST00000393099	C2048	m5C	C22	5'-GGGUGCCGGUAUUGAGGCACCCAGG-3'	(((((((........)))))))... (-16.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	25	chr16:89564184-89564208	RPL13	HGNC:10303	ENSG00000167526	GGGUGCCGGUAUUGAGGCACCCAGG
hsa_m5C_3201	chr10	110899695	110899696	+	ENST00000393104	C3388	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Testis	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	NA	15	chr10:110899691-110899705	PDCD4	HGNC:8763	ENSG00000150593	GGAGGCUGAGGCAGG
hsa_m5C_3202	chr10	110899701	110899702	+	ENST00000393104	C3394	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Testis	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	NA	15	chr10:110899691-110899705	PDCD4	HGNC:8763	ENSG00000150593	GGAGGCUGAGGCAGG
hsa_m5C_3203	chr1	116949312	116949313	+	ENST00000393203	C1242	m5C	C26	5'-GGCCCGAGGUGACGUGGUCCUUCAGCAGG-3'	.((..((((.(((...))))))).))... ( -6.30)	loop	mRNA	HeLa	UBS-seq:(High);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;31061524;38168991	29	chr1:116949288-116949316	PTGFRN	HGNC:9601	ENSG00000134247	GGCCCGAGGUGACGUGGUCCUUCAGCAGG
hsa_m5C_3204	chr3	127017511	127017512	+	ENST00000393409	C3610	m5C	C8	5'-GGGGGAGCGGCCGG-3'	..((......)).. ( -1.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr3:127017505-127017518	PLXNA1	HGNC:9099	ENSG00000114554	GGGGGAGCGGCCGG
hsa_m5C_3205	chr10	101040468	101040469	+	ENST00000393459	C2323	m5C	C9	5'-GGACACAGCGGUAGGAAUGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr10:101040461-101040480	SFXN3	HGNC:16087	ENSG00000107819	GGACACAGCGGUAGGAAUGG
hsa_m5C_3206	chr7	115016396	115016397	+	ENST00000393486	C1853	m5C	C6	5'-GGAGGCCAAGGUGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	14	chr7:115016392-115016405	MDFIC	HGNC:28870	ENSG00000135272	GGAGGCCAAGGUGG
hsa_m5C_3207	chr7	115016531	115016532	+	ENST00000393486	C1988	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr7:115016527-115016541	MDFIC	HGNC:28870	ENSG00000135272	GGAGGCUGAGGCAGG
hsa_m5C_3208	chr2	96848369	96848370	-	ENST00000393537	C512	m5C	C13	5'-GGCCAUCCGGGACCGAAAGGCACGG-3'	.(((...((....))...))).... ( -4.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr2:96848358-96848382	ANKRD39	HGNC:28640	ENSG00000213337	GGCCAUCCGGGACCGAAAGGCACGG
hsa_m5C_3209	chr10	97760190	97760191	+	ENST00000393677	C2331	m5C	C13	5'-GGAGUGGGAGGCCAGG-3'	....(((....))).. ( -2.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr10:97760179-97760194	ZFYVE27	HGNC:26559	ENSG00000155256	GGAGUGGGAGGCCAGG
hsa_m5C_3210	chr10	97737153	97737154	+	ENST00000393677	C32	m5C	C9	5'-GGCGGUGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	11	chr10:97737146-97737156	ZFYVE27	HGNC:26559	ENSG00000155256	GGCGGUGGCGG
hsa_m5C_3211	chr17	41971908	41971909	+	ENST00000393892	C784	m5C	C9	5'-GGGAUGAGCCCAGGGAGAAGAUGG-3'	(((.....)))............. ( -3.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	24	chr17:41971901-41971924	CNP	HGNC:2158	ENSG00000173786	GGGAUGAGCCCAGGGAGAAGAUGG
hsa_m5C_3212	chr19	8513162	8513163	-	ENST00000393927	C303	m5C	C15	5'-GGAACGUGGAGGGGCUGGAGGGAUGCAGCAGGG-3'	.............((((........)))).... ( -5.70)	loop	mRNA	Huh7;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database;RMVar database	28418038	33	chr19:8513145-8513177	ZNF414	HGNC:20630	ENSG00000133250	GGAACGUGGAGGGGCUGGAGGGAUGCAGCAGGG
hsa_m5C_3213	chr17	41769146	41769147	-	ENST00000393931	C661	m5C	C14	5'-GGAGGCGUCGCGGCGG-3'	....((......)).. ( -2.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr17:41769145-41769160	JUP	HGNC:6207	ENSG00000173801	GGAGGCGUCGCGGCGG
hsa_m5C_3214	chr7	100612836	100612837	+	ENST00000393950	C298	m5C	C11	5'-GGGUCCGGGGCCCCCUGGGCGGGGG-3'	..(((((((....)))))))..... (-11.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr7:100612827-100612851	MOSPD3	HGNC:25078	ENSG00000106330	GGGUCCGGGGCCCCCUGGGCGGGGG
hsa_m5C_3215	chr7	100612837	100612838	+	ENST00000393950	C299	m5C	C12	5'-GGGUCCGGGGCCCCCUGGGCGGGGG-3'	..(((((((....)))))))..... (-11.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr7:100612827-100612851	MOSPD3	HGNC:25078	ENSG00000106330	GGGUCCGGGGCCCCCUGGGCGGGGG
hsa_m5C_3216	chr7	100612838	100612839	+	ENST00000393950	C300	m5C	C13	5'-GGGUCCGGGGCCCCCUGGGCGGGGG-3'	..(((((((....)))))))..... (-11.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr7:100612827-100612851	MOSPD3	HGNC:25078	ENSG00000106330	GGGUCCGGGGCCCCCUGGGCGGGGG
hsa_m5C_3217	chr7	100612839	100612840	+	ENST00000393950	C301	m5C	C14	5'-GGGUCCGGGGCCCCCUGGGCGGGGG-3'	..(((((((....)))))))..... (-11.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr7:100612827-100612851	MOSPD3	HGNC:25078	ENSG00000106330	GGGUCCGGGGCCCCCUGGGCGGGGG
hsa_m5C_3218	chr7	100612840	100612841	+	ENST00000393950	C302	m5C	C15	5'-GGGUCCGGGGCCCCCUGGGCGGGGG-3'	..(((((((....)))))))..... (-11.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr7:100612827-100612851	MOSPD3	HGNC:25078	ENSG00000106330	GGGUCCGGGGCCCCCUGGGCGGGGG
hsa_m5C_3219	chr2	74474201	74474202	-	ENST00000393965	C2758	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr2:74474193-74474207	CCDC142	HGNC:25889	ENSG00000135637	GGAGGCUGAGGCAGG
hsa_m5C_3220	chr2	74459876	74459877	+	ENST00000393972	C482	m5C	C8	5'-GGU^GGUUCUGGCUGCUCUGG-3'	((((((....)))))).... ( -3.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr2:74459743-74459745;74459873-74459889	WBP1	HGNC:12737	ENSG00000239779	GGUGGUUCUGGCUGCUCUGG
hsa_m5C_3221	chr12	56143240	56143241	+	ENST00000394048	C3186	m5C	C15	5'-G^GUUUGAGUGGGAACUCCCCCUGGAUGAGG-3'	...((.((.(((.....))))).))..... ( -6.30)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr12:56143148-56143148;56143228-56143256	ESYT1	HGNC:29534	ENSG00000139641	GGUUUGAGUGGGAACUCCCCCUGGAUGAGG
hsa_m5C_3222	chr9	123382242	123382243	-	ENST00000394215	C2623	m5C	C10	5'-GGCUGCAGACGGAUCGGGACAGG-3'	(((((....))).))........ ( -0.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr9:123382230-123382252	DENND1A	HGNC:29324	ENSG00000119522	GGCUGCAGACGGAUCGGGACAGG
hsa_m5C_3223	chr15	80950267	80950268	+	ENST00000394685	C5850	m5C	C13	5'-GGGAAAGAACCACACAGCUAAGGGAGGGCCUGGG-3'	((.......))......(((.((.....))))). ( -4.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	34	chr15:80950256-80950289	CEMIP	HGNC:29213	ENSG00000103888	GGGAAAGAACCACACAGCUAAGGGAGGGCCUGGG
hsa_m5C_3224	chr16	50368796	50368797	-	ENST00000394688	C192	m5C	C7	5'-GGGGGGCGGGCACCGGGGCCCGGUCGGACAUGGG-3'	...((.(((((......))))).))......... (-12.90)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	34	chr16:50368770-50368803	BRD7	HGNC:14310	ENSG00000166164	GGGGGGCGGGCACCGGGGCCCGGUCGGACAUGGG
hsa_m5C_3225	chr16	50368784	50368785	-	ENST00000394688	C204	m5C	C19	5'-GGGGGGCGGGCACCGGGGCCCGGUCGGACAUGGG-3'	...((.(((((......))))).))......... (-12.90)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	34	chr16:50368770-50368803	BRD7	HGNC:14310	ENSG00000166164	GGGGGGCGGGCACCGGGGCCCGGUCGGACAUGGG
hsa_m5C_3226	chr16	50368783	50368784	-	ENST00000394688	C205	m5C	C20	5'-GGGGGGCGGGCACCGGGGCCCGGUCGGACAUGGG-3'	...((.(((((......))))).))......... (-12.90)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	34	chr16:50368770-50368803	BRD7	HGNC:14310	ENSG00000166164	GGGGGGCGGGCACCGGGGCCCGGUCGGACAUGGG
hsa_m5C_3227	chr16	50368782	50368783	-	ENST00000394688	C206	m5C	C21	5'-GGGGGGCGGGCACCGGGGCCCGGUCGGACAUGGG-3'	...((.(((((......))))).))......... (-12.90)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	34	chr16:50368770-50368803	BRD7	HGNC:14310	ENSG00000166164	GGGGGGCGGGCACCGGGGCCCGGUCGGACAUGGG
hsa_m5C_3228	chr11	62612662	62612663	-	ENST00000394773	C113	m5C	C35	5'-GGGAGCCGAGAGCGGCCCCGGGAGAGUCCGAGGGCCCGGGGGGG-3'	.....(((.....(((((((((....)))).))))))))..... (-17.80)	bulge	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	44	chr11:62612654-62612697	EML3	HGNC:26666	ENSG00000149499	GGGAGCCGAGAGCGGCCCCGGGAGAGUCCGAGGGCCCGGGGGGG
hsa_m5C_3229	chr11	62612661	62612662	-	ENST00000394773	C114	m5C	C36	5'-GGGAGCCGAGAGCGGCCCCGGGAGAGUCCGAGGGCCCGGGGGGG-3'	.....(((.....(((((((((....)))).))))))))..... (-17.80)	bulge	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	44	chr11:62612654-62612697	EML3	HGNC:26666	ENSG00000149499	GGGAGCCGAGAGCGGCCCCGGGAGAGUCCGAGGGCCCGGGGGGG
hsa_m5C_3230	chr11	62612660	62612661	-	ENST00000394773	C115	m5C	C37	5'-GGGAGCCGAGAGCGGCCCCGGGAGAGUCCGAGGGCCCGGGGGGG-3'	.....(((.....(((((((((....)))).))))))))..... (-17.80)	bulge	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	44	chr11:62612654-62612697	EML3	HGNC:26666	ENSG00000149499	GGGAGCCGAGAGCGGCCCCGGGAGAGUCCGAGGGCCCGGGGGGG
hsa_m5C_3231	chr11	62605883	62605884	-	ENST00000394773	C2071	m5C	C9	5'-GGGGAGACCUGGCCCAGG-3'	(((.........)))... ( -4.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr11:62605875-62605892	EML3	HGNC:26666	ENSG00000149499	GGGGAGACCUGGCCCAGG
hsa_m5C_3232	chr5	139293536	139293537	+	ENST00000394800	C334	m5C	C7	5'-GGAUGACGGAGAGGGAUCUCCGG-3'	......((((((....)))))). ( -9.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr5:139293531-139293553	NA	NA	ENSG00000280987	GGAUGACGGAGAGGGAUCUCCGG
hsa_m5C_3233	chr5	139322881	139322882	+	ENST00000394800	C2612	m5C	C11	5'-GGUGAUGUGGCUUCUGAUGGGAAAAAGG-3'	...........((((....))))..... ( -1.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr5:139322872-139322899	NA	NA	ENSG00000280987	GGUGAUGUGGCUUCUGAUGGGAAAAAGG
hsa_m5C_3234	chr5	139322881	139322882	+	ENST00000394805	C2306	m5C	C11	5'-GGUGAUGUGGCUUCUGAUGGGAAAAAGG-3'	...........((((....))))..... ( -1.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr5:139322872-139322899	MATR3	HGNC:6912	ENSG00000015479	GGUGAUGUGGCUUCUGAUGGGAAAAAGG
hsa_m5C_3235	chr11	62130312	62130313	+	ENST00000394818	C950	m5C	C14	5'-GGAUUGCGCAGGUCUCCCCUGGCCCACGG-3'	((...((.((((.....)))))))).... ( -7.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr11:62130300-62130328	INCENP	HGNC:6058	ENSG00000149503	GGAUUGCGCAGGUCUCCCCUGGCCCACGG
hsa_m5C_3236	chr17	29593188	29593189	+	ENST00000394859	C58	m5C	C11	5'-GGGCUGAGGGCCGGGCUAUGCAGCUGUGGGGACCCGGGGG-3'	..........(((((((.(((....))).)).)))))... (-11.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	40	chr17:29593179-29593218	ANKRD13B	HGNC:26363	ENSG00000198720	GGGCUGAGGGCCGGGCUAUGCAGCUGUGGGGACCCGGGGG
hsa_m5C_3237	chr16	31109253	31109254	+	ENST00000394951	C654	m5C	C9	5'-GGAGCGGUCCCGGGGGCGG-3'	......((((...)))).. ( -3.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr16:31109246-31109264	BCKDK	HGNC:16902	ENSG00000103507	GGAGCGGUCCCGGGGGCGG
hsa_m5C_3238	chr20	64073650	64073651	-	ENST00000395042	C1149	m5C	C4	5'-GGGCGGGCCUCCAGGUGCAGGGCGGG-3'	......((((.........))))... ( -4.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	26	chr20:64073629-64073654	RGS19	HGNC:13735	ENSG00000171700	GGGCGGGCCUCCAGGUGCAGGGCGGG
hsa_m5C_3239	chr16	30555314	30555315	-	ENST00000395091	C1295	m5C	C5	5'-GGGGCCGGGGGCCACAGGGGCCGGG-3'	.........((((.....))))... ( -7.30)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	25	chr16:30555295-30555319	ZNF764	HGNC:28200	ENSG00000169951	GGGGCCGGGGGCCACAGGGGCCGGG
hsa_m5C_3240	chr7	73682872	73682873	-	ENST00000395176	C581	m5C	C19	5'-GGGAACGGCGCCUGAGGGCCCGGCGGG-3'	.....(((.(((....))))))..... ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr7:73682865-73682891	DNAJC30	HGNC:16410	ENSG00000176410	GGGAACGGCGCCUGAGGGCCCGGCGGG
hsa_m5C_3241	chr7	73682871	73682872	-	ENST00000395176	C582	m5C	C20	5'-GGGAACGGCGCCUGAGGGCCCGGCGGG-3'	.....(((.(((....))))))..... ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr7:73682865-73682891	DNAJC30	HGNC:16410	ENSG00000176410	GGGAACGGCGCCUGAGGGCCCGGCGGG
hsa_m5C_3242	chr7	73682870	73682871	-	ENST00000395176	C583	m5C	C21	5'-GGGAACGGCGCCUGAGGGCCCGGCGGG-3'	.....(((.(((....))))))..... ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr7:73682865-73682891	DNAJC30	HGNC:16410	ENSG00000176410	GGGAACGGCGCCUGAGGGCCCGGCGGG
hsa_m5C_3243	chr7	72879663	72879664	+	ENST00000395270	C300	m5C	C13	5'-GGCGGCCUGGCGCCGG-3'	((((......)))).. ( -7.60)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr7:72879652-72879667	POM121	HGNC:19702	ENSG00000196313	GGCGGCCUGGCGCCGG
hsa_m5C_3244	chr17	28573781	28573782	-	ENST00000395321	C1168	m5C	C12	5'-GGCGAGGGCAACGGGACAAUGCUGG-3'	.((....))..(((.......))). ( -2.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	25	chr17:28573769-28573793	ALDOC	HGNC:418	ENSG00000109107	GGCGAGGGCAACGGGACAAUGCUGG
hsa_m5C_3245	chr16	29840210	29840211	+	ENST00000395353	C1136	m5C	C7	5'-GGAGAGCAGCUGGAACAAGGCAUCCAGG-3'	.........(((((........))))). ( -6.10)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	28	chr16:29840205-29840232	MVP	HGNC:7531	ENSG00000013364	GGAGAGCAGCUGGAACAAGGCAUCCAGG
hsa_m5C_3246	chr16	29836742	29836743	+	ENST00000395353	C887	m5C	C5	5'-GGCUCGGCGGAACUUCCGG-3'	.......((((...)))). ( -3.60)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr16:29836739-29836757	MVP	HGNC:7531	ENSG00000013364	GGCUCGGCGGAACUUCCGG
hsa_m5C_3247	chr16	29697884	29697885	+	ENST00000395384	C1386	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr16:29697880-29697894	QPRT	HGNC:9755	ENSG00000103485	GGAGGCUGAGGCAGG
hsa_m5C_3248	chr16	29697755	29697756	+	ENST00000395384	C1257	m5C	C12	5'-GGAGGCUGAGGCGG-3'	....((....)).. ( -0.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	14	chr16:29697745-29697758	QPRT	HGNC:9755	ENSG00000103485	GGAGGCUGAGGCGG
hsa_m5C_3249	chr7	56011499	56011500	-	ENST00000395471	C1746	m5C	C3	5'-GGCUGGAGUGCAGUGGCGCGG-3'	.......((((....)))).. ( -4.50)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	21	chr7:56011482-56011502	PSPH	HGNC:9577	ENSG00000146733	GGCUGGAGUGCAGUGGCGCGG
hsa_m5C_3250	chr7	56011491	56011492	-	ENST00000395471	C1754	m5C	C11	5'-GGCUGGAGUGCAGUGGCGCGG-3'	.......((((....)))).. ( -4.50)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	21	chr7:56011482-56011502	PSPH	HGNC:9577	ENSG00000146733	GGCUGGAGUGCAGUGGCGCGG
hsa_m5C_3251	chr7	56011485	56011486	-	ENST00000395471	C1760	m5C	C17	5'-GGCUGGAGUGCAGUGGCGCGG-3'	.......((((....)))).. ( -4.50)	loop	mRNA	SRV-infected and -uninfected Jurkat	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	30009162	21	chr7:56011482-56011502	PSPH	HGNC:9577	ENSG00000146733	GGCUGGAGUGCAGUGGCGCGG
hsa_m5C_3252	chr17	19867498	19867499	-	ENST00000395544	C438	m5C	C9	5'-GGCGCGCUCCGGGCCCGCGGAGCCGCGG-3'	.(((.((((((......))))))))).. (-17.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr17:19867480-19867507	ULK2	HGNC:13480	ENSG00000083290	GGCGCGCUCCGGGCCCGCGGAGCCGCGG
hsa_m5C_3253	chr17	19867497	19867498	-	ENST00000395544	C439	m5C	C10	5'-GGCGCGCUCCGGGCCCGCGGAGCCGCGG-3'	.(((.((((((......))))))))).. (-17.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr17:19867480-19867507	ULK2	HGNC:13480	ENSG00000083290	GGCGCGCUCCGGGCCCGCGGAGCCGCGG
hsa_m5C_3254	chr17	19867493	19867494	-	ENST00000395544	C443	m5C	C14	5'-GGCGCGCUCCGGGCCCGCGGAGCCGCGG-3'	.(((.((((((......))))))))).. (-17.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr17:19867480-19867507	ULK2	HGNC:13480	ENSG00000083290	GGCGCGCUCCGGGCCCGCGGAGCCGCGG
hsa_m5C_3255	chr17	19867492	19867493	-	ENST00000395544	C444	m5C	C15	5'-GGCGCGCUCCGGGCCCGCGGAGCCGCGG-3'	.(((.((((((......))))))))).. (-17.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr17:19867480-19867507	ULK2	HGNC:13480	ENSG00000083290	GGCGCGCUCCGGGCCCGCGGAGCCGCGG
hsa_m5C_3256	chr17	19867491	19867492	-	ENST00000395544	C445	m5C	C16	5'-GGCGCGCUCCGGGCCCGCGGAGCCGCGG-3'	.(((.((((((......))))))))).. (-17.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr17:19867480-19867507	ULK2	HGNC:13480	ENSG00000083290	GGCGCGCUCCGGGCCCGCGGAGCCGCGG
hsa_m5C_3257	chr17	19867696	19867697	-	ENST00000395544	C240	m5C	C20	5'-GGUGACGGCACCCCUGGCCCGG-3'	((((....)))).......... ( -4.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr17:19867695-19867716	ULK2	HGNC:13480	ENSG00000083290	GGUGACGGCACCCCUGGCCCGG
hsa_m5C_3258	chr11	45903411	45903412	+	ENST00000395629	C1765	m5C	C10	5'-GGGGAGGAGCAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	13	chr11:45903403-45903415	MAPK8IP1	HGNC:6882	ENSG00000121653	GGGGAGGAGCAGG
hsa_m5C_3259	chr17	18672185	18672186	-	ENST00000395675	C1302	m5C	C20	5'-GGAAGAGCGGAAAAGCCCCCCGGCGGCGGG-3'	......((......))..((((....)))) ( -7.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	30	chr17:18672176-18672205	FOXO3B	HGNC:3822	ENSG00000240445	GGAAGAGCGGAAAAGCCCCCCGGCGGCGGG
hsa_m5C_3260	chr7	44879158	44879159	-	ENST00000395699	C6372	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	15	chr7:44879150-44879164	PURB	HGNC:9702	ENSG00000146676	GGAGGCUGAGGCAGG
hsa_m5C_3261	chr7	44879152	44879153	-	ENST00000395699	C6378	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr7:44879150-44879164	PURB	HGNC:9702	ENSG00000146676	GGAGGCUGAGGCAGG
hsa_m5C_3262	chr7	44884738	44884739	-	ENST00000395699	C792	m5C	C4	5'-GGCCCGGGAGGCGGCGCCGG-3'	((((((.....))).))).. (-10.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr7:44884723-44884742	PURB	HGNC:9702	ENSG00000146676	GGCCCGGGAGGCGGCGCCGG
hsa_m5C_3263	chr7	44884727	44884728	-	ENST00000395699	C803	m5C	C15	5'-GGCCCGGGAGGCGGCGCCGG-3'	((((((.....))).))).. (-10.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr7:44884723-44884742	PURB	HGNC:9702	ENSG00000146676	GGCCCGGGAGGCGGCGCCGG
hsa_m5C_3264	chr7	44884725	44884726	-	ENST00000395699	C805	m5C	C17	5'-GGCCCGGGAGGCGGCGCCGG-3'	((((((.....))).))).. (-10.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr7:44884723-44884742	PURB	HGNC:9702	ENSG00000146676	GGCCCGGGAGGCGGCGCCGG
hsa_m5C_3265	chr7	44884724	44884725	-	ENST00000395699	C806	m5C	C18	5'-GGCCCGGGAGGCGGCGCCGG-3'	((((((.....))).))).. (-10.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr7:44884723-44884742	PURB	HGNC:9702	ENSG00000146676	GGCCCGGGAGGCGGCGCCGG
hsa_m5C_3266	chr17	17591674	17591675	-	ENST00000395781	C34	m5C	C12	5'-GGUUCCGGGGGCGCGUGGCUGCAGCGG-3'	....(((..(((.....)))....))) ( -6.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	27	chr17:17591660-17591686	PEMT	HGNC:8830	ENSG00000133027	GGUUCCGGGGGCGCGUGGCUGCAGCGG
hsa_m5C_3267	chr19	868088	868089	-	ENST00000395808	C2961	m5C	C4	5'-GGUCCAGGCGGACCUUGUGGUGACCCGG-3'	(((((....)))))...(((....))). ( -8.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr19:868065-868092	MED16	HGNC:17556	ENSG00000175221	GGUCCAGGCGGACCUUGUGGUGACCCGG
hsa_m5C_3268	chr19	868087	868088	-	ENST00000395808	C2962	m5C	C5	5'-GGUCCAGGCGGACCUUGUGGUGACCCGG-3'	(((((....)))))...(((....))). ( -8.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr19:868065-868092	MED16	HGNC:17556	ENSG00000175221	GGUCCAGGCGGACCUUGUGGUGACCCGG
hsa_m5C_3269	chr10	43205968	43205969	-	ENST00000395809	C2655	m5C	C6	5'-GGUCCCUGGAGGCCCUGAUGG-3'	((((......))))....... ( -3.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr10:43205954-43205974	RASGEF1A	HGNC:24246	ENSG00000198915	GGUCCCUGGAGGCCCUGAUGG
hsa_m5C_3270	chr6	31687514	31687515	-	ENST00000395952	C1619	m5C	C10	5'-GGACGGCGGCAGCUGG-3'	...((((....)))). ( -5.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr6:31687509-31687524	ABHD16A	HGNC:13921	ENSG00000204427	GGACGGCGGCAGCUGG
hsa_m5C_3271	chr8	100948728	100948729	-	ENST00000395957	C503	m5C	C5	5'-GGAGCCCGUAGGUCAUCUUGGAGG-3'	....((..((((....))))..)) ( -2.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	24	chr8:100948710-100948733	YWHAZ	HGNC:12855	ENSG00000164924	GGAGCCCGUAGGUCAUCUUGGAGG
hsa_m5C_3272	chr14	49586018	49586019	-	ENST00000396020	C123	m5C	C14	5'-GGCACGGUCUGAUCCGGAAAUAUGG-3'	....(((......)))......... ( -3.50)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;293T;heart,293T,liver,Muscle,Testis,HeLa,T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	30872485;28418038;31061524	25	chr14:49586008-49586032	RPS29	HGNC:10419	ENSG00000213741	GGCACGGUCUGAUCCGGAAAUAUGG
hsa_m5C_3273	chr7	35694579	35694580	-	ENST00000396081	C556	m5C	C15	5'-GGAGCCCGGCGGAGCCCGGACCUGGCGG-3'	...(((.(((((...)))..)).))).. ( -8.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr7:35694567-35694594	HERPUD2	HGNC:21915	ENSG00000122557	GGAGCCCGGCGGAGCCCGGACCUGGCGG
hsa_m5C_3274	chr1	50959903	50959904	-	ENST00000396153	C364	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	11	chr1:50959899-50959909	FAF1	HGNC:3578	ENSG00000185104	GGCGGCGGCGG
hsa_m5C_3275	chr1	50744710	50744711	-	ENST00000396153	C888	m5C	C3	5'-GGCUGGAAGACGGGAGAUGUGG-3'	..(((.....)))......... ( -1.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr1:50744692-50744713	FAF1	HGNC:3578	ENSG00000185104	GGCUGGAAGACGGGAGAUGUGG
hsa_m5C_3276	chr1	50744702	50744703	-	ENST00000396153	C896	m5C	C11	5'-GGCUGGAAGACGGGAGAUGUGG-3'	..(((.....)))......... ( -1.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr1:50744692-50744713	FAF1	HGNC:3578	ENSG00000185104	GGCUGGAAGACGGGAGAUGUGG
hsa_m5C_3277	chr19	57614274	57614275	+	ENST00000396161	C34	m5C	C17	5'-GGCUCUUAGGUGGAACCAUCGG-3'	((.(((.....))).))..... ( -3.50)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr19:57614259-57614280	ZNF134	HGNC:12918	ENSG00000213762	GGCUCUUAGGUGGAACCAUCGG
hsa_m5C_3278	chr19	55047484	55047485	-	ENST00000396247	C922	m5C	C16	5'-GGCGGCUGCAAG^GCUCUGG-3'	...((((....)))).... ( -3.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr19:55047482-55047488;55048329-55048340	RDH13	HGNC:19978	ENSG00000160439	GGCGGCUGCAAGGCUCUGG
hsa_m5C_3279	chr16	15410215	15410216	+	ENST00000396385	C2839	m5C	C7	5'-GGGAGGCUGAGGUGGGAGG-3'	NA	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	19	chr16:15410210-15410228	MPV17L	HGNC:26827	ENSG00000156968	GGGAGGCUGAGGUGGGAGG
hsa_m5C_3280	chr6	30724369	30724370	+	ENST00000396389	C1847	m5C	C13	5'-GGAGGAGGAUUUCGG-3'	((((.....)))).. ( -0.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	15	chr6:30724358-30724372	TUBB	HGNC:20778	ENSG00000196230	GGAGGAGGAUUUCGG
hsa_m5C_3281	chr22	42062847	42062848	-	ENST00000396398	C1451	m5C	C16	5'-GGAUCCCUUAGGCAUCCAGGGACGCAGG-3'	((((((....)).))))........... ( -5.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr22:42062836-42062863	NAGA	HGNC:7631	ENSG00000198951	GGAUCCCUUAGGCAUCCAGGGACGCAGG
hsa_m5C_3282	chr16	14975102	14975103	+	ENST00000396410	C78	m5C	C12	5'-GGCCGCGGGCGCGGGGG-3'	..((((....))))... ( -6.40)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	17	chr16:14975092-14975108	PDXDC1	HGNC:28995	ENSG00000179889	GGCCGCGGGCGCGGGGG
hsa_m5C_3283	chr2	227283825	227283826	+	ENST00000396578	C2819	m5C	C7	5'-GGGCCCCCUGGGAACCCAGGCACACCAGGGCAGAGGG-3'	..(((((((((....))))).......))))...... (-13.50)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	37	chr2:227283820-227283856	COL4A3	HGNC:2204	ENSG00000169031	GGGCCCCCUGGGAACCCAGGCACACCAGGGCAGAGGG
hsa_m5C_3284	chr2	227283826	227283827	+	ENST00000396578	C2820	m5C	C8	5'-GGGCCCCCUGGGAACCCAGGCACACCAGGGCAGAGGG-3'	..(((((((((....))))).......))))...... (-13.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	37	chr2:227283820-227283856	COL4A3	HGNC:2204	ENSG00000169031	GGGCCCCCUGGGAACCCAGGCACACCAGGGCAGAGGG
hsa_m5C_3285	chr16	8783984	8783985	+	ENST00000396600	C4996	m5C	C6	5'-GGGGGCUGGGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	11	chr16:8783980-8783990	ABAT	HGNC:23	ENSG00000183044	GGGGGCUGGGG
hsa_m5C_3286	chr9	36163572	36163573	+	ENST00000396613	C1577	m5C	C6	5'-GGAGGCGGCCGGGGCAGGGG-3'	........((......)).. ( -1.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	20	chr9:36163568-36163587	GLIPR2	HGNC:18007	ENSG00000122694	GGAGGCGGCCGGGGCAGGGG
hsa_m5C_3287	chr2	227098791	227098792	-	ENST00000396625	C1406	m5C	C8	5'-G^GCCCACCAGGGGACCCAGG-3'	(((((.....))).)).... ( -6.00)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr2:227098780-227098798;227099620-227099620	COL4A4	HGNC:2206	ENSG00000081052	GGCCCACCAGGGGACCCAGG
hsa_m5C_3288	chr2	227042176	227042177	-	ENST00000396625	C3776	m5C	C36	5'-GGGAGACCCUGGGCCAAGAGGCCUCCAGGGGGAUCCAGGG-3'	.(((..(((((((((....)))))...))))..))).... (-20.70)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	40	chr2:227042173-227042212	COL4A4	HGNC:2206	ENSG00000081052	GGGAGACCCUGGGCCAAGAGGCCUCCAGGGGGAUCCAGGG
hsa_m5C_3289	chr12	6934240	6934241	+	ENST00000396684	C681	m5C	C30	5'-GGGCCCCGGGAAGAACUGAGAUCGAGGGGCCGGG-3'	.((((((..((..........))..))))))... (-14.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	34	chr12:6934212-6934245	ATN1	HGNC:3033	ENSG00000111676	GGGCCCCGGGAAGAACUGAGAUCGAGGGGCCGGG
hsa_m5C_3290	chr19	47679448	47679449	+	ENST00000396720	C473	m5C	C18	5'-GGGGGCGGCGGCGGGGGCAGUGGGGG-3'	.......((.((....)).))..... ( -2.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	26	chr19:47679432-47679457	BICRA	HGNC:4332	ENSG00000063169	GGGGGCGGCGGCGGGGGCAGUGGGGG
hsa_m5C_3291	chr2	219245668	219245669	+	ENST00000396738	C191	m5C	C18	5'-GGGCGUGGGAGCGGGGGCUGCCCAAAGAUGGG-3'	.....(((((((....))).))))........ ( -9.90)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	32	chr2:219245652-219245683	STK16	HGNC:11394	ENSG00000115661	GGGCGUGGGAGCGGGGGCUGCCCAAAGAUGGG
hsa_m5C_3292	chr20	44306143	44306144	-	ENST00000396825	C1324	m5C	C6	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	15	chr20:44306135-44306149	FITM2	HGNC:16135	ENSG00000197296	GGAGGCCGAGGCAGG
hsa_m5C_3293	chr20	44306142	44306143	-	ENST00000396825	C1325	m5C	C7	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	T24;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	15	chr20:44306135-44306149	FITM2	HGNC:16135	ENSG00000197296	GGAGGCCGAGGCAGG
hsa_m5C_3294	chr20	44306137	44306138	-	ENST00000396825	C1330	m5C	C12	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	15	chr20:44306135-44306149	FITM2	HGNC:16135	ENSG00000197296	GGAGGCCGAGGCAGG
hsa_m5C_3295	chr3	15440577	15440578	+	ENST00000396842	C2412	m5C	C11	5'-GGAGGGGAAGCAGUCUGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	18	chr3:15440568-15440585	EAF1	HGNC:20907	ENSG00000144597	GGAGGGGAAGCAGUCUGG
hsa_m5C_3296	chr20	43716229	43716230	+	ENST00000396863	C2439	m5C	C9	5'-GGUGGAGGCAACAGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr20:43716222-43716236	MYBL2	HGNC:7548	ENSG00000101057	GGUGGAGGCAACAGG
hsa_m5C_3297	chr20	43716232	43716233	+	ENST00000396863	C2442	m5C	C12	5'-GGUGGAGGCAACAGG-3'	NA	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	15	chr20:43716222-43716236	MYBL2	HGNC:7548	ENSG00000101057	GGUGGAGGCAACAGG
hsa_m5C_3298	chr7	5299268	5299269	+	ENST00000396872	C1199	m5C	C8	5'-GGUGGCGCGGGUGAUCUGG-3'	(((.((....)).)))... ( -4.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr7:5299262-5299280	SLC29A4	HGNC:23097	ENSG00000164638	GGUGGCGCGGGUGAUCUGG
hsa_m5C_3299	chrX	47975745	47975746	-	ENST00000396965	C2692	m5C	C6	5'-GGGGUCUGAGGAGAAACAGGCUGGGG-3'	..((((((........)))))).... ( -6.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	26	chrX:47975726-47975751	ZNF182	HGNC:13001	ENSG00000147118	GGGGUCUGAGGAGAAACAGGCUGGGG
hsa_m5C_3300	chr17	4366418	4366419	-	ENST00000396981	C257	m5C	C4	5'-GGUCGCGGGGCCCGG-3'	((((....))))... ( -4.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr17:4366408-4366422	UBE2G1	HGNC:12482	ENSG00000132388	GGUCGCGGGGCCCGG
hsa_m5C_3301	chr19	32691996	32691997	+	ENST00000397061	C177	m5C	C3	5'-GGCGGCGGGCGG-3'	.((.....)).. ( -1.70)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	12	chr19:32691995-32692006	NUDT19	HGNC:32036	ENSG00000213965	GGCGGCGGGCGG
hsa_m5C_3302	chr19	32691999	32692000	+	ENST00000397061	C180	m5C	C6	5'-GGCGGCGGGCGG-3'	.((.....)).. ( -1.70)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	12	chr19:32691995-32692006	NUDT19	HGNC:32036	ENSG00000213965	GGCGGCGGGCGG
hsa_m5C_3303	chr19	32692003	32692004	+	ENST00000397061	C184	m5C	C10	5'-GGCGGCGGGCGG-3'	.((.....)).. ( -1.70)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	12	chr19:32691995-32692006	NUDT19	HGNC:32036	ENSG00000213965	GGCGGCGGGCGG
hsa_m5C_3304	chr7	997151	997152	-	ENST00000397098	C1992	m5C	C6	5'-GGGGCCUGGCUGUGG-3'	..(((...))).... ( -0.40)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr7:997143-997157	C7orf50	HGNC:22421	ENSG00000146540	GGGGCCUGGCUGUGG
hsa_m5C_3305	chr17	3669195	3669196	+	ENST00000397133	C290	m5C	C3	5'-GGCGGCCGUGCGGGG-3'	.(((....))).... ( -1.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr17:3669194-3669208	EMC6	HGNC:28430	ENSG00000127774	GGCGGCCGUGCGGGG
hsa_m5C_3306	chr9	33043085	33043086	-	ENST00000397149	C5815	m5C	C7	5'-GGGAGGCCGAGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr9:33043078-33043092	SMU1	HGNC:18247	ENSG00000122692	GGGAGGCCGAGGUGG
hsa_m5C_3307	chr9	33043084	33043085	-	ENST00000397149	C5816	m5C	C8	5'-GGGAGGCCGAGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr9:33043078-33043092	SMU1	HGNC:18247	ENSG00000122692	GGGAGGCCGAGGUGG
hsa_m5C_3308	chr12	1646003	1646004	+	ENST00000397196	C1030	m5C	C8	5'-GGAGGACCUGGUCUAUGUGG-3'	...((((...))))...... ( -1.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr12:1645997-1646016	WNT5B	HGNC:16265	ENSG00000111186	GGAGGACCUGGUCUAUGUGG
hsa_m5C_3309	chr7	151086851	151086852	+	ENST00000397238	C378	m5C	C12	5'-GGGCAGUUCGGCGGCGCGGGGCCCGGGGCCGGGGG-3'	......(((((((((.....)))....)))))).. (-11.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	35	chr7:151086841-151086875	AGAP3	HGNC:16923	ENSG00000133612	GGGCAGUUCGGCGGCGCGGGGCCCGGGGCCGGGGG
hsa_m5C_3310	chr7	151086854	151086855	+	ENST00000397238	C381	m5C	C15	5'-GGGCAGUUCGGCGGCGCGGGGCCCGGGGCCGGGGG-3'	......(((((((((.....)))....)))))).. (-11.20)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	35	chr7:151086841-151086875	AGAP3	HGNC:16923	ENSG00000133612	GGGCAGUUCGGCGGCGCGGGGCCCGGGGCCGGGGG
hsa_m5C_3311	chr7	151086856	151086857	+	ENST00000397238	C383	m5C	C17	5'-GGGCAGUUCGGCGGCGCGGGGCCCGGGGCCGGGGG-3'	......(((((((((.....)))....)))))).. (-11.20)	bulge	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	35	chr7:151086841-151086875	AGAP3	HGNC:16923	ENSG00000133612	GGGCAGUUCGGCGGCGCGGGGCCCGGGGCCGGGGG
hsa_m5C_3312	chr7	151086868	151086869	+	ENST00000397238	C395	m5C	C29	5'-GGGCAGUUCGGCGGCGCGGGGCCCGGGGCCGGGGG-3'	......(((((((((.....)))....)))))).. (-11.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	35	chr7:151086841-151086875	AGAP3	HGNC:16923	ENSG00000133612	GGGCAGUUCGGCGGCGCGGGGCCCGGGGCCGGGGG
hsa_m5C_3313	chr7	151086869	151086870	+	ENST00000397238	C396	m5C	C30	5'-GGGCAGUUCGGCGGCGCGGGGCCCGGGGCCGGGGG-3'	......(((((((((.....)))....)))))).. (-11.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	35	chr7:151086841-151086875	AGAP3	HGNC:16923	ENSG00000133612	GGGCAGUUCGGCGGCGCGGGGCCCGGGGCCGGGGG
hsa_m5C_3314	chr14	23321724	23321725	+	ENST00000397276	C269	m5C	C14	5'-GGGAGCUCCGGGCCCUGGGCCUGGUUCGGG-3'	..(((..(((((((...))))))))))... (-12.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr14:23321712-23321741	PABPN1	HGNC:8565	ENSG00000100836	GGGAGCUCCGGGCCCUGGGCCUGGUUCGGG
hsa_m5C_3315	chr14	23321560	23321561	+	ENST00000397276	C105	m5C	C5	5'-GGGGCCGGUGGGGAGGCCGGGGAGGGGG-3'	....(((((......)))))........ ( -8.60)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database	28418038	28	chr14:23321557-23321584	PABPN1	HGNC:8565	ENSG00000100836	GGGGCCGGUGGGGAGGCCGGGGAGGGGG
hsa_m5C_3316	chr14	23321561	23321562	+	ENST00000397276	C106	m5C	C6	5'-GGGGCCGGUGGGGAGGCCGGGGAGGGGG-3'	....(((((......)))))........ ( -8.60)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	28418038	28	chr14:23321557-23321584	PABPN1	HGNC:8565	ENSG00000100836	GGGGCCGGUGGGGAGGCCGGGGAGGGGG
hsa_m5C_3317	chr7	150371880	150371881	+	ENST00000397281	C1129	m5C	C11	5'-GGCUCUGGGGCCCCGGCCCAGGG-3'	..(((((((.......))))))) (-10.80)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	23	chr7:150371871-150371893	REPIN1	HGNC:17922	ENSG00000214022	GGCUCUGGGGCCCCGGCCCAGGG
hsa_m5C_3318	chr7	150371881	150371882	+	ENST00000397281	C1130	m5C	C12	5'-GGCUCUGGGGCCCCGGCCCAGGG-3'	..(((((((.......))))))) (-10.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	23	chr7:150371871-150371893	REPIN1	HGNC:17922	ENSG00000214022	GGCUCUGGGGCCCCGGCCCAGGG
hsa_m5C_3319	chr7	150371882	150371883	+	ENST00000397281	C1131	m5C	C13	5'-GGCUCUGGGGCCCCGGCCCAGGG-3'	..(((((((.......))))))) (-10.80)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	23	chr7:150371871-150371893	REPIN1	HGNC:17922	ENSG00000214022	GGCUCUGGGGCCCCGGCCCAGGG
hsa_m5C_3320	chr7	150371883	150371884	+	ENST00000397281	C1132	m5C	C14	5'-GGCUCUGGGGCCCCGGCCCAGGG-3'	..(((((((.......))))))) (-10.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	23	chr7:150371871-150371893	REPIN1	HGNC:17922	ENSG00000214022	GGCUCUGGGGCCCCGGCCCAGGG
hsa_m5C_3321	chr7	150369764	150369765	+	ENST00000397281	C247	m5C	C9	5'-GGGGGCUACCGGAGUGUGGGCCGAAGCAGG-3'	..((.((((......)))).))........ ( -7.90)	bulge	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	30	chr7:150369757-150369786	REPIN1	HGNC:17922	ENSG00000214022	GGGGGCUACCGGAGUGUGGGCCGAAGCAGG
hsa_m5C_3322	chr12	132140146	132140147	-	ENST00000397333	C1749	m5C	C10	5'-GGUGUGGAGCUGGUGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr12:132140141-132140156	DDX51	HGNC:20082	ENSG00000185163	GGUGUGGAGCUGGUGG
hsa_m5C_3323	chr11	1565813	1565814	-	ENST00000397374	C492	m5C	C11	5'-GGCUGGGGACCGG-3'	..((((...)))) ( -1.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	13	chr11:1565812-1565824	DUSP8	HGNC:3074	ENSG00000184545	GGCUGGGGACCGG
hsa_m5C_3324	chr16	1677163	1677164	+	ENST00000397412	C7228	m5C	C11	5'-GGAAGGAGGCCGG-3'	((.......)).. ( -0.30)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	13	chr16:1677154-1677166	CRAMP1	HGNC:14122	ENSG00000007545	GGAAGGAGGCCGG
hsa_m5C_3325	chr16	1612573	1612574	+	ENST00000397412	C215	m5C	C6	5'-GGGGGCCGGGGCUGCCCGGCCCGGCUGGUUCUGCGGGCACCCGGG-3'	..((((((((....)))))))).(((.((...)).)))....... (-25.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	45	chr16:1612569-1612613	CRAMP1	HGNC:14122	ENSG00000007545	GGGGGCCGGGGCUGCCCGGCCCGGCUGGUUCUGCGGGCACCCGGG
hsa_m5C_3326	chr16	1612574	1612575	+	ENST00000397412	C216	m5C	C7	5'-GGGGGCCGGGGCUGCCCGGCCCGGCUGGUUCUGCGGGCACCCGGG-3'	..((((((((....)))))))).(((.((...)).)))....... (-25.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	45	chr16:1612569-1612613	CRAMP1	HGNC:14122	ENSG00000007545	GGGGGCCGGGGCUGCCCGGCCCGGCUGGUUCUGCGGGCACCCGGG
hsa_m5C_3327	chr16	1612583	1612584	+	ENST00000397412	C225	m5C	C16	5'-GGGGGCCGGGGCUGCCCGGCCCGGCUGGUUCUGCGGGCACCCGGG-3'	..((((((((....)))))))).(((.((...)).)))....... (-25.40)	loop	mRNA	293T;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	45	chr16:1612569-1612613	CRAMP1	HGNC:14122	ENSG00000007545	GGGGGCCGGGGCUGCCCGGCCCGGCUGGUUCUGCGGGCACCCGGG
hsa_m5C_3328	chr16	1612584	1612585	+	ENST00000397412	C226	m5C	C17	5'-GGGGGCCGGGGCUGCCCGGCCCGGCUGGUUCUGCGGGCACCCGGG-3'	..((((((((....)))))))).(((.((...)).)))....... (-25.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	45	chr16:1612569-1612613	CRAMP1	HGNC:14122	ENSG00000007545	GGGGGCCGGGGCUGCCCGGCCCGGCUGGUUCUGCGGGCACCCGGG
hsa_m5C_3329	chr16	1612587	1612588	+	ENST00000397412	C229	m5C	C20	5'-GGGGGCCGGGGCUGCCCGGCCCGGCUGGUUCUGCGGGCACCCGGG-3'	..((((((((....)))))))).(((.((...)).)))....... (-25.40)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	45	chr16:1612569-1612613	CRAMP1	HGNC:14122	ENSG00000007545	GGGGGCCGGGGCUGCCCGGCCCGGCUGGUUCUGCGGGCACCCGGG
hsa_m5C_3330	chr16	1612588	1612589	+	ENST00000397412	C230	m5C	C21	5'-GGGGGCCGGGGCUGCCCGGCCCGGCUGGUUCUGCGGGCACCCGGG-3'	..((((((((....)))))))).(((.((...)).)))....... (-25.40)	loop	mRNA	293T;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	45	chr16:1612569-1612613	CRAMP1	HGNC:14122	ENSG00000007545	GGGGGCCGGGGCUGCCCGGCCCGGCUGGUUCUGCGGGCACCCGGG
hsa_m5C_3331	chr16	1612589	1612590	+	ENST00000397412	C231	m5C	C22	5'-GGGGGCCGGGGCUGCCCGGCCCGGCUGGUUCUGCGGGCACCCGGG-3'	..((((((((....)))))))).(((.((...)).)))....... (-25.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	45	chr16:1612569-1612613	CRAMP1	HGNC:14122	ENSG00000007545	GGGGGCCGGGGCUGCCCGGCCCGGCUGGUUCUGCGGGCACCCGGG
hsa_m5C_3332	chr6	8014525	8014526	-	ENST00000397457	C1700	m5C	C7	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr6:8014518-8014532	BLOC1S5	HGNC:18561	ENSG00000188428	GGAGGCCGAGGCAGG
hsa_m5C_3333	chr17	80036676	80036677	+	ENST00000397545	C36	m5C	C19	5'-GGAAAUGGCGGAACCGGGCGGCGCGGCGGG-3'	.............(((.((...))..))). ( -4.20)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	30	chr17:80036659-80036688	CCDC40	HGNC:26090	ENSG00000141519	GGAAAUGGCGGAACCGGGCGGCGCGGCGGG
hsa_m5C_3334	chr17	80036679	80036680	+	ENST00000397545	C39	m5C	C22	5'-GGAAAUGGCGGAACCGGGCGGCGCGGCGGG-3'	.............(((.((...))..))). ( -4.20)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	30	chr17:80036659-80036688	CCDC40	HGNC:26090	ENSG00000141519	GGAAAUGGCGGAACCGGGCGGCGCGGCGGG
hsa_m5C_3335	chr17	80036681	80036682	+	ENST00000397545	C41	m5C	C24	5'-GGAAAUGGCGGAACCGGGCGGCGCGGCGGG-3'	.............(((.((...))..))). ( -4.20)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	30	chr17:80036659-80036688	CCDC40	HGNC:26090	ENSG00000141519	GGAAAUGGCGGAACCGGGCGGCGCGGCGGG
hsa_m5C_3336	chr11	561218	561219	+	ENST00000397583	C250	m5C	C17	5'-GGGGUCGCGGCGCGGGCUUCGGUGCCCGCGGCGGGG-3'	....((.((.(((((((......))))))).)).)) (-23.00)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	36	chr11:561203-561238	RASSF7	HGNC:1166	ENSG00000099849	GGGGUCGCGGCGCGGGCUUCGGUGCCCGCGGCGGGG
hsa_m5C_3337	chr16	693823	693824	-	ENST00000397621	C2195	m5C	C6	5'-GGGCCCAGUGGGAUUGAGGGGGCUGGG-3'	...((((((............)))))) ( -7.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	27	chr16:693803-693829	FBXL16	HGNC:14150	ENSG00000127585	GGGCCCAGUGGGAUUGAGGGGGCUGGG
hsa_m5C_3338	chr21	46154226	46154227	-	ENST00000397748	C204	m5C	C5	5'-GGGGCCGCCGGAGUGCGUGGUGGAGGGGG-3'	....((((((.......))))))...... ( -8.30)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	29	chr21:46154203-46154231	FTCD	HGNC:3974	ENSG00000160282	GGGGCCGCCGGAGUGCGUGGUGGAGGGGG
hsa_m5C_3339	chr14	21460865	21460866	-	ENST00000397762	C1068	m5C	C6	5'-GGAGGCCAAGGUGG-3'	NA	loop	mRNA	HeLa;liver,Muscle,spleen,HeLa,T24	RNA-BisSeq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	28418038	14	chr14:21460858-21460871	RAB2B	HGNC:20246	ENSG00000129472	GGAGGCCAAGGUGG
hsa_m5C_3340	chr14	21460864	21460865	-	ENST00000397762	C1069	m5C	C7	5'-GGAGGCCAAGGUGG-3'	NA	loop	mRNA	Muscle,spleen,HeLa,T24;HeLa	RNA-BisSeq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	14	chr14:21460858-21460871	RAB2B	HGNC:20246	ENSG00000129472	GGAGGCCAAGGUGG
hsa_m5C_3341	chr14	21476927	21476928	-	ENST00000397762	C32	m5C	C4	5'-GGUCGGAGGUAAGUGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	16	chr14:21476916-21476931	RAB2B	HGNC:20246	ENSG00000129472	GGUCGGAGGUAAGUGG
hsa_m5C_3342	chr22	29802036	29802037	-	ENST00000397771	C1703	m5C	C8	5'-GGAGGAGCGGCUGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	14	chr22:29802031-29802044	ASCC2	HGNC:24103	ENSG00000100325	GGAGGAGCGGCUGG
hsa_m5C_3343	chr22	29788789	29788790	-	ENST00000397771	C2675	m5C	C6	5'-GGGGCCGGCAAGCAGG-3'	...((......))... ( -0.40)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr22:29788780-29788795	ASCC2	HGNC:24103	ENSG00000100325	GGGGCCGGCAAGCAGG
hsa_m5C_3344	chr11	120448321	120448322	+	ENST00000397843	C2542	m5C	C6	5'-GGGGUCGGAUUGG-3'	NA	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	13	chr11:120448317-120448329	ARHGEF12	HGNC:14193	ENSG00000196914	GGGGUCGGAUUGG
hsa_m5C_3345	chr8	22024592	22024593	+	ENST00000397940	C460	m5C	C19	5'-GGCAGCUGUGGAGUGGGGCGCGG-3'	.....(((((........))))) ( -4.30)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	23	chr8:22024575-22024597	NPM2	HGNC:7930	ENSG00000158806	GGCAGCUGUGGAGUGGGGCGCGG
hsa_m5C_3346	chr8	19817448	19817449	+	ENST00000397977	C34	m5C	C9	5'-GGUGGCGGCGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	11	chr8:19817441-19817451	INTS10	HGNC:25548	ENSG00000104613	GGUGGCGGCGG
hsa_m5C_3347	chr19	7912461	7912462	+	ENST00000397981	C1414	m5C	C5	5'-GGGGCCAGGGGCAUGGCCACAGG-3'	..(((((......)))))..... ( -9.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	23	chr19:7912458-7912480	MAP2K7	HGNC:6847	ENSG00000076984	GGGGCCAGGGGCAUGGCCACAGG
hsa_m5C_3348	chr19	7912462	7912463	+	ENST00000397981	C1415	m5C	C6	5'-GGGGCCAGGGGCAUGGCCACAGG-3'	..(((((......)))))..... ( -9.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	23	chr19:7912458-7912480	MAP2K7	HGNC:6847	ENSG00000076984	GGGGCCAGGGGCAUGGCCACAGG
hsa_m5C_3349	chr12	57820111	57820112	-	ENST00000398073	C4600	m5C	C12	5'-GGGUAGGGGAUCUGCUUCCCACUGUGACUGGGCUAUGGG-3'	.(((((.....))))).((((..((......))..)))) ( -9.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	39	chr12:57820085-57820123	CTDSP2	HGNC:17077	ENSG00000175215	GGGUAGGGGAUCUGCUUCCCACUGUGACUGGGCUAUGGG
hsa_m5C_3350	chr8	12754784	12754785	-	ENST00000398246	C742	m5C	C19	5'-GGGCCAGCGCGAGCGGGCCCGGGCGGCCG-3'	(((((.((....)).)))))((....)). (-16.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	29	chr8:12754775-12754803	LONRF1	HGNC:26302	ENSG00000154359	GGGCCAGCGCGAGCGGGCCCGGGCGGCCG
hsa_m5C_3351	chr2	85319428	85319429	-	ENST00000398263	C4736	m5C	C7	5'-GGGAGGCCGAGGCGGGG-3'	......(((...))).. ( -1.70)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	17	chr2:85319419-85319435	TGOLN2	HGNC:15450	ENSG00000152291	GGGAGGCCGAGGCGGGG
hsa_m5C_3352	chr2	85319427	85319428	-	ENST00000398263	C4737	m5C	C8	5'-GGGAGGCCGAGGCGGGG-3'	......(((...))).. ( -1.70)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	17	chr2:85319419-85319435	TGOLN2	HGNC:15450	ENSG00000152291	GGGAGGCCGAGGCGGGG
hsa_m5C_3353	chr2	85319422	85319423	-	ENST00000398263	C4742	m5C	C13	5'-GGGAGGCCGAGGCGGGG-3'	......(((...))).. ( -1.70)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	17	chr2:85319419-85319435	TGOLN2	HGNC:15450	ENSG00000152291	GGGAGGCCGAGGCGGGG
hsa_m5C_3354	chr22	24177542	24177543	+	ENST00000398319	C6630	m5C	C13	5'-GGGAUGGGGAGGCUCAGG-3'	....((((....)))).. ( -2.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	18	chr22:24177531-24177548	CABIN1	HGNC:24187	ENSG00000099991	GGGAUGGGGAGGCUCAGG
hsa_m5C_3355	chr22	24177544	24177545	+	ENST00000398319	C6632	m5C	C15	5'-GGGAUGGGGAGGCUCAGG-3'	....((((....)))).. ( -2.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	18	chr22:24177531-24177548	CABIN1	HGNC:24187	ENSG00000099991	GGGAUGGGGAGGCUCAGG
hsa_m5C_3356	chr17	43827751	43827752	-	ENST00000398393	C858	m5C	C5	5'-GGAGCG^GCCUGGUCCACGUUGG-3'	(((.((...)).)))....... ( -4.30)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr17:43825826-43825841;43827751-43827756	MPP3	HGNC:7221	ENSG00000161647	GGAGCGGCCUGGUCCACGUUGG
hsa_m5C_3357	chr17	40123183	40123184	+	ENST00000398532	C1214	m5C	C5	5'-GGGACCCUGGCGGCCAGCGAGGGCAGAUGG-3'	....((((.((.....)).))))....... (-11.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr17:40123180-40123209	MSL1	HGNC:27905	ENSG00000188895	GGGACCCUGGCGGCCAGCGAGGGCAGAUGG
hsa_m5C_3358	chr17	40123184	40123185	+	ENST00000398532	C1215	m5C	C6	5'-GGGACCCUGGCGGCCAGCGAGGGCAGAUGG-3'	....((((.((.....)).))))....... (-11.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr17:40123180-40123209	MSL1	HGNC:27905	ENSG00000188895	GGGACCCUGGCGGCCAGCGAGGGCAGAUGG
hsa_m5C_3359	chr17	40123185	40123186	+	ENST00000398532	C1216	m5C	C7	5'-GGGACCCUGGCGGCCAGCGAGGGCAGAUGG-3'	....((((.((.....)).))))....... (-11.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr17:40123180-40123209	MSL1	HGNC:27905	ENSG00000188895	GGGACCCUGGCGGCCAGCGAGGGCAGAUGG
hsa_m5C_3360	chr17	40123244	40123245	+	ENST00000398532	C1275	m5C	C12	5'-GGGGGUGGUGGCGGCUCGGG-3'	.(((.((....)).)))... ( -4.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	20	chr17:40123234-40123253	MSL1	HGNC:27905	ENSG00000188895	GGGGGUGGUGGCGGCUCGGG
hsa_m5C_3361	chr17	40123249	40123250	+	ENST00000398532	C1280	m5C	C17	5'-GGGGGUGGUGGCGGCUCGGG-3'	.(((.((....)).)))... ( -4.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	20	chr17:40123234-40123253	MSL1	HGNC:27905	ENSG00000188895	GGGGGUGGUGGCGGCUCGGG
hsa_m5C_3362	chr2	61348131	61348132	-	ENST00000398571	C2418	m5C	C16	5'-GGAACAGGAAAGGACCUGG-3'	....((((......)))). ( -4.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr2:61348129-61348147	USP34	HGNC:20066	ENSG00000115464	GGAACAGGAAAGGACCUGG
hsa_m5C_3363	chr12	42144669	42144670	-	ENST00000398675	C205	m5C	C21	5'-GGCGGGCGCGGCGGCGGCGGCGAAGGAGG-3'	......(((.((....)).)))....... ( -8.70)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	29	chr12:42144662-42144690	GXYLT1	HGNC:27482	ENSG00000151233	GGCGGGCGCGGCGGCGGCGGCGAAGGAGG
hsa_m5C_3364	chr8	144103730	144103731	-	ENST00000398712	C43	m5C	C9	5'-GGGCGGGGCGGCGGCGGCGG-3'	...((..((....))..)). ( -3.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	20	chr8:144103720-144103739	SHARPIN	HGNC:25321	ENSG00000179526	GGGCGGGGCGGCGGCGGCGG
hsa_m5C_3365	chr18	46087461	46087462	-	ENST00000398752	C895	m5C	C9	5'-GGUGUCGGCUACGGCCUCGG-3'	......(((....))).... ( -5.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr18:46087451-46087470	ATP5F1A	HGNC:823	ENSG00000152234	GGUGUCGGCUACGGCCUCGG
hsa_m5C_3366	chr18	46087454	46087455	-	ENST00000398752	C902	m5C	C16	5'-GGUGUCGGCUACGGCCUCGG-3'	......(((....))).... ( -5.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr18:46087451-46087470	ATP5F1A	HGNC:823	ENSG00000152234	GGUGUCGGCUACGGCCUCGG
hsa_m5C_3367	chr8	143568658	143568659	-	ENST00000398882	C1595	m5C	C6	5'-GGGGCCGGGGCGGGCUCCGGCUGGGG-3'	..((((((((....)))))))).... (-13.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	26	chr8:143568639-143568664	MROH6	HGNC:27814	ENSG00000204839	GGGGCCGGGGCGGGCUCCGGCUGGGG
hsa_m5C_3368	chr17	27577630	27577631	+	ENST00000398988	C546	m5C	C10	5'-GGAAGGUGACAGGCCUGG^G-3'	...((((.....))))... ( -3.90)	loop	mRNA	spleen	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	19	chr17:27577622-27577639;27582646-27582646	KSR1	HGNC:6465	ENSG00000141068	GGAAGGUGACAGGCCUGGG
hsa_m5C_3369	chr17	27625555	27625556	+	ENST00000398988	C6355	m5C	C14	5'-GGACUGGGGGCAGCUGG-3'	((.(((....))))).. ( -2.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	17	chr17:27625543-27625559	KSR1	HGNC:6465	ENSG00000141068	GGACUGGGGGCAGCUGG
hsa_m5C_3370	chr17	27577557	27577558	+	ENST00000398988	C473	m5C	C8	5'-GGAGACGCUGCGGCGCUGUGGGGCCAGCGG-3'	.....((((..(((........))))))). ( -9.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr17:27577551-27577580	KSR1	HGNC:6465	ENSG00000141068	GGAGACGCUGCGGCGCUGUGGGGCCAGCGG
hsa_m5C_3371	chr21	37195881	37195882	+	ENST00000399017	C8172	m5C	C9	5'-GGCCAAAACGGGCUGGCCAGG-3'	(((((........)))))... ( -8.80)	loop	mRNA	293T;frontal_cortex,Muscle,Testis,HeLa;HeLa,siControl;HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	28418038;38168991;31061524;22344696	21	chr21:37195874-37195894	TTC3	HGNC:12393	ENSG00000182670	GGCCAAAACGGGCUGGCCAGG
hsa_m5C_3372	chr17	15977666	15977667	-	ENST00000399277	C913	m5C	C11	5'-GGCUGGGGUGCAGUGG-3'	.((((.....)))).. ( -3.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr17:15977662-15977677	ZSWIM7	HGNC:26993	ENSG00000214941	GGCUGGGGUGCAGUGG
hsa_m5C_3373	chr14	24240645	24240646	-	ENST00000399423	C1165	m5C	C8	5'-GGGGAGGCCAUAAGG-3'	((.....))...... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr14:24240639-24240653	TINF2	HGNC:11824	ENSG00000092330	GGGGAGGCCAUAAGG
hsa_m5C_3374	chr14	24240644	24240645	-	ENST00000399423	C1166	m5C	C9	5'-GGGGAGGCCAUAAGG-3'	((.....))...... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr14:24240639-24240653	TINF2	HGNC:11824	ENSG00000092330	GGGGAGGCCAUAAGG
hsa_m5C_3375	chr12	6970501	6970502	-	ENST00000399433	C222	m5C	C16	5'-GGGACGGCUGCCCGCCGGGCCCCGGGGCAUGGG-3'	((..((((.....))))..))(((.....))). (-11.30)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	33	chr12:6970485-6970517	PHB2	HGNC:30306	ENSG00000215021	GGGACGGCUGCCCGCCGGGCCCCGGGGCAUGGG
hsa_m5C_3376	chr16	4689033	4689034	+	ENST00000399577	C4487	m5C	C13	5'-GGCUCCGAGGGGCCGUGG-3'	(((((....))))).... ( -8.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr16:4689022-4689039	MGRN1	HGNC:20254	ENSG00000102858	GGCUCCGAGGGGCCGUGG
hsa_m5C_3377	chr22	18091396	18091397	+	ENST00000399744	C4627	m5C	C6	5'-GGAGGCCAAGGUGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969	14	chr22:18091392-18091405	PEX26	HGNC:22965	ENSG00000215193	GGAGGCCAAGGUGG
hsa_m5C_3378	chr22	18091397	18091398	+	ENST00000399744	C4628	m5C	C7	5'-GGAGGCCAAGGUGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	14	chr22:18091392-18091405	PEX26	HGNC:22965	ENSG00000215193	GGAGGCCAAGGUGG
hsa_m5C_3379	chr22	18088674	18088675	+	ENST00000399744	C1905	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr22:18088670-18088684	PEX26	HGNC:22965	ENSG00000215193	GGAGGCUGAGGCAGG
hsa_m5C_3380	chr22	18088680	18088681	+	ENST00000399744	C1911	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr22:18088670-18088684	PEX26	HGNC:22965	ENSG00000215193	GGAGGCUGAGGCAGG
hsa_m5C_3381	chr22	18091359	18091360	+	ENST00000399744	C4590	m5C	C10	5'-GGCUGGGCGCGGUGG-3'	.((((....)))).. ( -2.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr22:18091351-18091365	PEX26	HGNC:22965	ENSG00000215193	GGCUGGGCGCGGUGG
hsa_m5C_3382	chr18	21111400	21111401	-	ENST00000399799	C413	m5C	C9	5'-GGAGCGGGCCCGGCCCGUGG-3'	...((((((...)))))).. ( -9.50)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	20	chr18:21111390-21111409	ROCK1	HGNC:10251	ENSG00000067900	GGAGCGGGCCCGGCCCGUGG
hsa_m5C_3383	chr18	21111399	21111400	-	ENST00000399799	C414	m5C	C10	5'-GGAGCGGGCCCGGCCCGUGG-3'	...((((((...)))))).. ( -9.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr18:21111390-21111409	ROCK1	HGNC:10251	ENSG00000067900	GGAGCGGGCCCGGCCCGUGG
hsa_m5C_3384	chr18	21111398	21111399	-	ENST00000399799	C415	m5C	C11	5'-GGAGCGGGCCCGGCCCGUGG-3'	...((((((...)))))).. ( -9.50)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	20	chr18:21111390-21111409	ROCK1	HGNC:10251	ENSG00000067900	GGAGCGGGCCCGGCCCGUGG
hsa_m5C_3385	chr18	21111395	21111396	-	ENST00000399799	C418	m5C	C14	5'-GGAGCGGGCCCGGCCCGUGG-3'	...((((((...)))))).. ( -9.50)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	20	chr18:21111390-21111409	ROCK1	HGNC:10251	ENSG00000067900	GGAGCGGGCCCGGCCCGUGG
hsa_m5C_3386	chr18	21111394	21111395	-	ENST00000399799	C419	m5C	C15	5'-GGAGCGGGCCCGGCCCGUGG-3'	...((((((...)))))).. ( -9.50)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	20	chr18:21111390-21111409	ROCK1	HGNC:10251	ENSG00000067900	GGAGCGGGCCCGGCCCGUGG
hsa_m5C_3387	chr18	21111393	21111394	-	ENST00000399799	C420	m5C	C16	5'-GGAGCGGGCCCGGCCCGUGG-3'	...((((((...)))))).. ( -9.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr18:21111390-21111409	ROCK1	HGNC:10251	ENSG00000067900	GGAGCGGGCCCGGCCCGUGG
hsa_m5C_3388	chr18	21111463	21111464	-	ENST00000399799	C350	m5C	C4	5'-GGGCCGGGCCGAGUAGAGCCGGGGACGCGGG-3'	...((.(((........))).))........ ( -8.30)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	31	chr18:21111437-21111467	ROCK1	HGNC:10251	ENSG00000067900	GGGCCGGGCCGAGUAGAGCCGGGGACGCGGG
hsa_m5C_3389	chr18	21111462	21111463	-	ENST00000399799	C351	m5C	C5	5'-GGGCCGGGCCGAGUAGAGCCGGGGACGCGGG-3'	...((.(((........))).))........ ( -8.30)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	31	chr18:21111437-21111467	ROCK1	HGNC:10251	ENSG00000067900	GGGCCGGGCCGAGUAGAGCCGGGGACGCGGG
hsa_m5C_3390	chr18	21111458	21111459	-	ENST00000399799	C355	m5C	C9	5'-GGGCCGGGCCGAGUAGAGCCGGGGACGCGGG-3'	...((.(((........))).))........ ( -8.30)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	31	chr18:21111437-21111467	ROCK1	HGNC:10251	ENSG00000067900	GGGCCGGGCCGAGUAGAGCCGGGGACGCGGG
hsa_m5C_3391	chr18	21111457	21111458	-	ENST00000399799	C356	m5C	C10	5'-GGGCCGGGCCGAGUAGAGCCGGGGACGCGGG-3'	...((.(((........))).))........ ( -8.30)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	31	chr18:21111437-21111467	ROCK1	HGNC:10251	ENSG00000067900	GGGCCGGGCCGAGUAGAGCCGGGGACGCGGG
hsa_m5C_3392	chr4	25782408	25782409	-	ENST00000399878	C2442	m5C	C11	5'-G^GGAUUGCAUCAGGCAGUCAAUGGCCUGGG-3'	.........((((((........)))))). ( -8.40)	bulge	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	31358969;28418038;38168991	30	chr4:25782390-25782418;25784228-25784228	SEL1L3	HGNC:29108	ENSG00000091490	GGGAUUGCAUCAGGCAGUCAAUGGCCUGGG
hsa_m5C_3393	chr1	24929796	24929797	-	ENST00000399916	C553	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database	28418038	11	chr1:24929792-24929802	RUNX3	HGNC:10473	ENSG00000020633	GGCGGCGGCGG
hsa_m5C_3394	chr18	6032229	6032230	-	ENST00000400104	C1691	m5C	C6	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr18:6032221-6032235	L3MBTL4	HGNC:26677	ENSG00000154655	GGAGGCCGAGGCAGG
hsa_m5C_3395	chr13	106567721	106567722	-	ENST00000400198	C416	m5C	C10	5'-GGCCGUGUCCCGGCGCGAGCGGGACCGGG-3'	..(((.(((((.((....)))))))))). (-16.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr13:106567703-106567731	ARGLU1	HGNC:25482	ENSG00000134884	GGCCGUGUCCCGGCGCGAGCGGGACCGGG
hsa_m5C_3396	chr13	106567711	106567712	-	ENST00000400198	C426	m5C	C20	5'-GGCCGUGUCCCGGCGCGAGCGGGACCGGG-3'	..(((.(((((.((....)))))))))). (-16.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr13:106567703-106567731	ARGLU1	HGNC:25482	ENSG00000134884	GGCCGUGUCCCGGCGCGAGCGGGACCGGG
hsa_m5C_3397	chr13	106567706	106567707	-	ENST00000400198	C431	m5C	C25	5'-GGCCGUGUCCCGGCGCGAGCGGGACCGGG-3'	..(((.(((((.((....)))))))))). (-16.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr13:106567703-106567731	ARGLU1	HGNC:25482	ENSG00000134884	GGCCGUGUCCCGGCGCGAGCGGGACCGGG
hsa_m5C_3398	chr18	58044394	58044395	+	ENST00000400345	C170	m5C	C5	5'-GGCGCCGGGGCUGCCGCCCGGUGCUCGG-3'	(((((((((.......)))))))))... (-17.50)	loop	mRNA	HeLa	m5C-RIP-seq:(Medium),RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	28	chr18:58044391-58044418	NEDD4L	HGNC:7728	ENSG00000049759	GGCGCCGGGGCUGCCGCCCGGUGCUCGG
hsa_m5C_3399	chr18	58044415	58044416	+	ENST00000400345	C191	m5C	C26	5'-GGCGCCGGGGCUGCCGCCCGGUGCUCGG-3'	(((((((((.......)))))))))... (-17.50)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;HeLa,siControl;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	28418038;31061524;38168991	28	chr18:58044391-58044418	NEDD4L	HGNC:7728	ENSG00000049759	GGCGCCGGGGCUGCCGCCCGGUGCUCGG
hsa_m5C_3400	chr21	45295054	45295055	+	ENST00000400362	C4802	m5C	C11	5'-GGGGAAGGGCCAGAGG-3'	.((......))..... ( -1.50)	loop	lncRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr21:45295045-45295060	LINC00205	HGNC:16420	ENSG00000223768	GGGGAAGGGCCAGAGG
hsa_m5C_3401	chr22	24628330	24628331	+	ENST00000400382	C2269	m5C	C16	5'-GGCCGUGGAGGAGCCCCGG-3'	..(((.((......))))) ( -4.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr22:24628316-24628334	GGT1	HGNC:4250	ENSG00000100031	GGCCGUGGAGGAGCCCCGG
hsa_m5C_3402	chr16	29799979	29799980	+	ENST00000400751	C1633	m5C	C3	5'-GGCCCUGAGGAAGAGGAGAUCGG-3'	...(((.......)))....... ( -2.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr16:29799978-29800000	KIF22	HGNC:6391	ENSG00000079616	GGCCCUGAGGAAGAGGAGAUCGG
hsa_m5C_3403	chr1	32773210	32773211	+	ENST00000401073	C3734	m5C	C26	5'-GGCCCUGAGGCUGCAGAGUUGGGAGCAGG-3'	.(((((..((((....))))))).))... ( -6.90)	bulge	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr1:32773186-32773214	NHSL3	HGNC:29301	ENSG00000162522	GGCCCUGAGGCUGCAGAGUUGGGAGCAGG
hsa_m5C_3404	chr1	32742102	32742103	+	ENST00000401073	C274	m5C	C3	5'-GGCGGCGGGGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	11	chr1:32742101-32742111	NHSL3	HGNC:29301	ENSG00000162522	GGCGGCGGGGG
hsa_m5C_3405	chr1	32742105	32742106	+	ENST00000401073	C277	m5C	C6	5'-GGCGGCGGGGG-3'	NA	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr1:32742101-32742111	NHSL3	HGNC:29301	ENSG00000162522	GGCGGCGGGGG
hsa_m5C_3406	chr8	65841558	65841559	-	ENST00000401827	C506	m5C	C6	5'-GGGGCCGGCGG-3'	NA	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	11	chr8:65841554-65841564	PDE7A	HGNC:8791	ENSG00000205268	GGGGCCGGCGG
hsa_m5C_3407	chr22	42692809	42692810	-	ENST00000401850	C1632	m5C	C20	5'-GGGAGGCAAGAUUGAGGGCCCGGGAGAGGG-3'	(((...((....))....)))......... ( -4.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	30	chr22:42692800-42692829	A4GALT	HGNC:18149	ENSG00000128274	GGGAGGCAAGAUUGAGGGCCCGGGAGAGGG
hsa_m5C_3408	chr22	42692808	42692809	-	ENST00000401850	C1633	m5C	C21	5'-GGGAGGCAAGAUUGAGGGCCCGGGAGAGGG-3'	(((...((....))....)))......... ( -4.20)	loop	mRNA	T24;Testis,T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	30	chr22:42692800-42692829	A4GALT	HGNC:18149	ENSG00000128274	GGGAGGCAAGAUUGAGGGCCCGGGAGAGGG
hsa_m5C_3409	chr3	9397860	9397861	+	ENST00000402198	C247	m5C	C10	5'-GGGUACGGGCCAUUCCCGGCCAGG-3'	.(((.((((.....)))))))... ( -8.70)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr3:9397852-9397875	SETD5	HGNC:25566	ENSG00000168137	GGGUACGGGCCAUUCCCGGCCAGG
hsa_m5C_3410	chr22	23764311	23764312	+	ENST00000402217	C482	m5C	C10	5'-GGAGGAGGACCUGAAGGAAGGGG-3'	.........(((......))).. ( -3.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	23	chr22:23764303-23764325	C22orf15	HGNC:15558	ENSG00000169314	GGAGGAGGACCUGAAGGAAGGGG
hsa_m5C_3411	chr22	30579754	30579755	-	ENST00000402281	C1925	m5C	C11	5'-GGGGAGAGGACCCAG^G-3'	(((.......)))... ( -4.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	16	chr22:30579303-30579303;30579751-30579765	PES1	HGNC:8848	ENSG00000100029	GGGGAGAGGACCCAGG
hsa_m5C_3412	chr22	30579753	30579754	-	ENST00000402281	C1926	m5C	C12	5'-GGGGAGAGGACCCAG^G-3'	(((.......)))... ( -4.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	16	chr22:30579303-30579303;30579751-30579765	PES1	HGNC:8848	ENSG00000100029	GGGGAGAGGACCCAGG
hsa_m5C_3413	chr3	112561550	112561551	-	ENST00000402314	C366	m5C	C5	5'-GGGGCCGGCCGCUACUCCGG-3'	....((((........)))) ( -4.20)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	20	chr3:112561536-112561555	ATG3	HGNC:20962	ENSG00000144848	GGGGCCGGCCGCUACUCCGG
hsa_m5C_3414	chr3	112561549	112561550	-	ENST00000402314	C367	m5C	C6	5'-GGGGCCGGCCGCUACUCCGG-3'	....((((........)))) ( -4.20)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	20	chr3:112561536-112561555	ATG3	HGNC:20962	ENSG00000144848	GGGGCCGGCCGCUACUCCGG
hsa_m5C_3415	chr19	54207532	54207533	+	ENST00000402367	C1503	m5C	C4	5'-GGGCCAGGGUGGGGCUGGG-3'	...((((.......)))). ( -5.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	30526041	19	chr19:54207530-54207548	RPS9	HGNC:10442	ENSG00000170889	GGGCCAGGGUGGGGCUGGG
hsa_m5C_3416	chr19	54207533	54207534	+	ENST00000402367	C1504	m5C	C5	5'-GGGCCAGGGUGGGGCUGGG-3'	...((((.......)))). ( -5.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	19	chr19:54207530-54207548	RPS9	HGNC:10442	ENSG00000170889	GGGCCAGGGUGGGGCUGGG
hsa_m5C_3417	chr12	57430768	57430769	-	ENST00000402412	C275	m5C	C6	5'-GGGCCCGGGCGGCGGGCGGAGACGUGGG-3'	..(((((.....)))))........... (-10.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr12:57430747-57430774	R3HDM2	HGNC:29167	ENSG00000179912	GGGCCCGGGCGGCGGGCGGAGACGUGGG
hsa_m5C_3418	chr6	151350071	151350072	+	ENST00000402676	C1953	m5C	C17	5'-GGACAGCCAGGAGGAGCAAAAGG-3'	((....))............... ( -0.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	23	chr6:151350056-151350078	AKAP12	HGNC:370	ENSG00000131016	GGACAGCCAGGAGGAGCAAAAGG
hsa_m5C_3419	chr19	1568239	1568240	-	ENST00000402693	C86	m5C	C3	5'-GGCCCGGCCCGGCCCGG-3'	((((......))))... ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr19:1568226-1568242	MEX3D	HGNC:16734	ENSG00000181588	GGCCCGGCCCGGCCCGG
hsa_m5C_3420	chr19	1568238	1568239	-	ENST00000402693	C87	m5C	C4	5'-GGCCCGGCCCGGCCCGG-3'	((((......))))... ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr19:1568226-1568242	MEX3D	HGNC:16734	ENSG00000181588	GGCCCGGCCCGGCCCGG
hsa_m5C_3421	chr19	1556012	1556013	-	ENST00000402693	C1773	m5C	C6	5'-GGCGCCCGGCGCAGCAGUGGGGCCGGG-3'	....((((((.((....))..)))))) (-12.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr19:1555992-1556018	MEX3D	HGNC:16734	ENSG00000181588	GGCGCCCGGCGCAGCAGUGGGGCCGGG
hsa_m5C_3422	chr19	1556011	1556012	-	ENST00000402693	C1774	m5C	C7	5'-GGCGCCCGGCGCAGCAGUGGGGCCGGG-3'	....((((((.((....))..)))))) (-12.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr19:1555992-1556018	MEX3D	HGNC:16734	ENSG00000181588	GGCGCCCGGCGCAGCAGUGGGGCCGGG
hsa_m5C_3423	chr19	1556035	1556036	-	ENST00000402693	C1750	m5C	C25	5'-GGCUGCUCCACGGUCAACGGAGCCCCGG-3'	((..(((((.........))))).)).. ( -9.00)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	28	chr19:1556033-1556060	MEX3D	HGNC:16734	ENSG00000181588	GGCUGCUCCACGGUCAACGGAGCCCCGG
hsa_m5C_3424	chr19	1568119	1568120	-	ENST00000402693	C206	m5C	C4	5'-GGGCGGCGCGGGCGGCGGCGGCGGCGCGGG-3'	..(((.(((..((....)).))).)))... (-14.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	30	chr19:1568094-1568123	MEX3D	HGNC:16734	ENSG00000181588	GGGCGGCGCGGGCGGCGGCGGCGGCGCGGG
hsa_m5C_3425	chr19	1568107	1568108	-	ENST00000402693	C218	m5C	C16	5'-GGGCGGCGCGGGCGGCGGCGGCGGCGCGGG-3'	..(((.(((..((....)).))).)))... (-14.60)	bulge	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	30	chr19:1568094-1568123	MEX3D	HGNC:16734	ENSG00000181588	GGGCGGCGCGGGCGGCGGCGGCGGCGCGGG
hsa_m5C_3426	chr19	1568104	1568105	-	ENST00000402693	C221	m5C	C19	5'-GGGCGGCGCGGGCGGCGGCGGCGGCGCGGG-3'	..(((.(((..((....)).))).)))... (-14.60)	bulge	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	30	chr19:1568094-1568123	MEX3D	HGNC:16734	ENSG00000181588	GGGCGGCGCGGGCGGCGGCGGCGGCGCGGG
hsa_m5C_3427	chr19	1568101	1568102	-	ENST00000402693	C224	m5C	C22	5'-GGGCGGCGCGGGCGGCGGCGGCGGCGCGGG-3'	..(((.(((..((....)).))).)))... (-14.60)	bulge	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	30	chr19:1568094-1568123	MEX3D	HGNC:16734	ENSG00000181588	GGGCGGCGCGGGCGGCGGCGGCGGCGCGGG
hsa_m5C_3428	chr19	1568098	1568099	-	ENST00000402693	C227	m5C	C25	5'-GGGCGGCGCGGGCGGCGGCGGCGGCGCGGG-3'	..(((.(((..((....)).))).)))... (-14.60)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	30	chr19:1568094-1568123	MEX3D	HGNC:16734	ENSG00000181588	GGGCGGCGCGGGCGGCGGCGGCGGCGCGGG
hsa_m5C_3429	chr19	1568096	1568097	-	ENST00000402693	C229	m5C	C27	5'-GGGCGGCGCGGGCGGCGGCGGCGGCGCGGG-3'	..(((.(((..((....)).))).)))... (-14.60)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	30	chr19:1568094-1568123	MEX3D	HGNC:16734	ENSG00000181588	GGGCGGCGCGGGCGGCGGCGGCGGCGCGGG
hsa_m5C_3430	chr19	1568019	1568020	-	ENST00000402693	C306	m5C	C6	5'-GGGGGCGGGGGCGGCGGCGGCGGCGGCGUGGGGGCGGCGGGGG-3'	....((....)).((....)).((.((......)).))..... (-10.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	43	chr19:1567983-1568025	MEX3D	HGNC:16734	ENSG00000181588	GGGGGCGGGGGCGGCGGCGGCGGCGGCGUGGGGGCGGCGGGGG
hsa_m5C_3431	chr19	1568013	1568014	-	ENST00000402693	C312	m5C	C12	5'-GGGGGCGGGGGCGGCGGCGGCGGCGGCGUGGGGGCGGCGGGGG-3'	....((....)).((....)).((.((......)).))..... (-10.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	43	chr19:1567983-1568025	MEX3D	HGNC:16734	ENSG00000181588	GGGGGCGGGGGCGGCGGCGGCGGCGGCGUGGGGGCGGCGGGGG
hsa_m5C_3432	chr19	1568010	1568011	-	ENST00000402693	C315	m5C	C15	5'-GGGGGCGGGGGCGGCGGCGGCGGCGGCGUGGGGGCGGCGGGGG-3'	....((....)).((....)).((.((......)).))..... (-10.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969;28418038	43	chr19:1567983-1568025	MEX3D	HGNC:16734	ENSG00000181588	GGGGGCGGGGGCGGCGGCGGCGGCGGCGUGGGGGCGGCGGGGG
hsa_m5C_3433	chr19	1568007	1568008	-	ENST00000402693	C318	m5C	C18	5'-GGGGGCGGGGGCGGCGGCGGCGGCGGCGUGGGGGCGGCGGGGG-3'	....((....)).((....)).((.((......)).))..... (-10.40)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	43	chr19:1567983-1568025	MEX3D	HGNC:16734	ENSG00000181588	GGGGGCGGGGGCGGCGGCGGCGGCGGCGUGGGGGCGGCGGGGG
hsa_m5C_3434	chr19	1568004	1568005	-	ENST00000402693	C321	m5C	C21	5'-GGGGGCGGGGGCGGCGGCGGCGGCGGCGUGGGGGCGGCGGGGG-3'	....((....)).((....)).((.((......)).))..... (-10.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	28418038	43	chr19:1567983-1568025	MEX3D	HGNC:16734	ENSG00000181588	GGGGGCGGGGGCGGCGGCGGCGGCGGCGUGGGGGCGGCGGGGG
hsa_m5C_3435	chr19	1568001	1568002	-	ENST00000402693	C324	m5C	C24	5'-GGGGGCGGGGGCGGCGGCGGCGGCGGCGUGGGGGCGGCGGGGG-3'	....((....)).((....)).((.((......)).))..... (-10.40)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	43	chr19:1567983-1568025	MEX3D	HGNC:16734	ENSG00000181588	GGGGGCGGGGGCGGCGGCGGCGGCGGCGUGGGGGCGGCGGGGG
hsa_m5C_3436	chr19	1567998	1567999	-	ENST00000402693	C327	m5C	C27	5'-GGGGGCGGGGGCGGCGGCGGCGGCGGCGUGGGGGCGGCGGGGG-3'	....((....)).((....)).((.((......)).))..... (-10.40)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database	28418038	43	chr19:1567983-1568025	MEX3D	HGNC:16734	ENSG00000181588	GGGGGCGGGGGCGGCGGCGGCGGCGGCGUGGGGGCGGCGGGGG
hsa_m5C_3437	chr22	37490655	37490656	-	ENST00000403299	C3819	m5C	C14	5'-GGACUGGGGUGUUCCCUGG-3'	...((((((....)))))) ( -7.00)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr22:37490651-37490669	CARD10	HGNC:16422	ENSG00000100065	GGACUGGGGUGUUCCCUGG
hsa_m5C_3438	chr2	131147568	131147569	+	ENST00000403716	C2067	m5C	C3	5'-GGCGGGCGGAUCACGAGG-3'	......((.....))... ( -0.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	18	chr2:131147567-131147584	PLEKHB2	HGNC:19236	ENSG00000115762	GGCGGGCGGAUCACGAGG
hsa_m5C_3439	chr2	131147572	131147573	+	ENST00000403716	C2071	m5C	C7	5'-GGCGGGCGGAUCACGAGG-3'	......((.....))... ( -0.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	18	chr2:131147567-131147584	PLEKHB2	HGNC:19236	ENSG00000115762	GGCGGGCGGAUCACGAGG
hsa_m5C_3440	chr19	10309795	10309796	-	ENST00000403903	C85	m5C	C6	5'-GGGAUCCAAGGCAGAGGCCUGGG-3'	.....(((.(((....)))))). ( -7.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	23	chr19:10309779-10309801	ZGLP1	HGNC:37245	ENSG00000220201	GGGAUCCAAGGCAGAGGCCUGGG
hsa_m5C_3441	chr22	38072501	38072502	+	ENST00000404072	C929	m5C	C29	5'-GGG^CCUUUGGGGACGUGUUCUCCGUGAUCGGGGUGCGGG-3'	...((....))....(((.(((((....))))).))).. ( -9.80)	loop	mRNA	MRC-5;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database;38168991	28418038;38168991	39	chr22:38071742-38071744;38072477-38072512	PICK1	HGNC:9394	ENSG00000100151	GGGCCUUUGGGGACGUGUUCUCCGUGAUCGGGGUGCGGG
hsa_m5C_3442	chr1	1716388	1716389	-	ENST00000404249	C558	m5C	C15	5'-GGGAAUGGGAAAGACAGAAGAGAAGGGAAAUGGCAAGGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	39	chr1:1716365-1716403	CDK11A	HGNC:1730	ENSG00000008128	GGGAAUGGGAAAGACAGAAGAGAAGGGAAAUGGCAAGGG
hsa_m5C_3443	chr2	219556580	219556581	-	ENST00000404537	C4516	m5C	C5	5'-GGCCCCAGGUGGAGAUGG-3'	....(((........))) ( -1.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr2:219556568-219556585	OBSL1	HGNC:29092	ENSG00000124006	GGCCCCAGGUGGAGAUGG
hsa_m5C_3444	chr2	219550837	219550838	-	ENST00000404537	C5995	m5C	C20	5'-GGCUGCUGGUAGAGG^GCAACUAGG-3'	((.((((.......)))).))... ( -3.80)	loop	mRNA	heart,Muscle;heart	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	24	chr2:219550834-219550842;219551529-219551543	OBSL1	HGNC:29092	ENSG00000124006	GGCUGCUGGUAGAGGGCAACUAGG
hsa_m5C_3445	chr3	13630780	13630781	+	ENST00000404922	C3176	m5C	C3	5'-GGCUACCAGCUGGCUGAGGAUGGG-3'	.....(((.((......)).))). ( -3.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr3:13630779-13630802	FBLN2	HGNC:3601	ENSG00000163520	GGCUACCAGCUGGCUGAGGAUGGG
hsa_m5C_3446	chr3	13630784	13630785	+	ENST00000404922	C3180	m5C	C7	5'-GGCUACCAGCUGGCUGAGGAUGGG-3'	.....(((.((......)).))). ( -3.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr3:13630779-13630802	FBLN2	HGNC:3601	ENSG00000163520	GGCUACCAGCUGGCUGAGGAUGGG
hsa_m5C_3447	chr2	61825888	61825889	-	ENST00000404929	C2736	m5C	C8	5'-GGGAGGCCGAGACGGGUGG-3'	.....(((......))).. ( -3.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr2:61825878-61825896	FAM161A	HGNC:25808	ENSG00000170264	GGGAGGCCGAGACGGGUGG
hsa_m5C_3448	chrX	21967252	21967253	+	ENST00000404933	C223	m5C	C9	5'-GGGGAUGGCGG-3'	NA	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	11	chrX:21967245-21967255	SMS	HGNC:11123	ENSG00000102172	GGGGAUGGCGG
hsa_m5C_3449	chr2	24665763	24665764	+	ENST00000405141	C816	m5C	C25	5'-GGCAUCAAG^CACGGAAAAGAGGCGCAGG-3'	.((.((............)).))..... ( -1.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	28	chr2:24658758-24658766;24665749-24665767	NCOA1	HGNC:7668	ENSG00000084676	GGCAUCAAGCACGGAAAAGAGGCGCAGG
hsa_m5C_3450	chr12	124495153	124495154	-	ENST00000405201	C567	m5C	C4	5'-GGACGCACACG^GACGUCGGGCUCCUGG-3'	(((.((...((.....)).)))))... ( -4.50)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr12:124486553-124486568;124495147-124495157	NCOR2	HGNC:7673	ENSG00000196498	GGACGCACACGGACGUCGGGCUCCUGG
hsa_m5C_3451	chr12	124341977	124341978	-	ENST00000405201	C5502	m5C	C6	5'-GGCGGCGCUGGAGAACCGG-3'	.......((((....)))) ( -2.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr12:124341965-124341983	NCOR2	HGNC:7673	ENSG00000196498	GGCGGCGCUGGAGAACCGG
hsa_m5C_3452	chr12	124341975	124341976	-	ENST00000405201	C5504	m5C	C8	5'-GGCGGCGCUGGAGAACCGG-3'	.......((((....)))) ( -2.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr12:124341965-124341983	NCOR2	HGNC:7673	ENSG00000196498	GGCGGCGCUGGAGAACCGG
hsa_m5C_3453	chr12	124333133	124333134	-	ENST00000405201	C7220	m5C	C21	5'-GGGAUGGGGAACAGACGGAGCCCAG^CAGG-3'	....((((............))))..... ( -4.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	29	chr12:124332464-124332467;124333130-124333154	NCOR2	HGNC:7673	ENSG00000196498	GGGAUGGGGAACAGACGGAGCCCAGCAGG
hsa_m5C_3454	chr12	124333132	124333133	-	ENST00000405201	C7221	m5C	C22	5'-GGGAUGGGGAACAGACGGAGCCCAG^CAGG-3'	....((((............))))..... ( -4.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	29	chr12:124332464-124332467;124333130-124333154	NCOR2	HGNC:7673	ENSG00000196498	GGGAUGGGGAACAGACGGAGCCCAGCAGG
hsa_m5C_3455	chr12	124333131	124333132	-	ENST00000405201	C7222	m5C	C23	5'-GGGAUGGGGAACAGACGGAGCCCAG^CAGG-3'	....((((............))))..... ( -4.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	29	chr12:124332464-124332467;124333130-124333154	NCOR2	HGNC:7673	ENSG00000196498	GGGAUGGGGAACAGACGGAGCCCAGCAGG
hsa_m5C_3456	chr7	116560377	116560378	+	ENST00000405348	C1851	m5C	C4	5'-GGCCUCCAAGGAGGGG-3'	..((((....)))).. ( -5.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	16	chr7:116560375-116560390	CAV1	HGNC:1527	ENSG00000105974	GGCCUCCAAGGAGGGG
hsa_m5C_3457	chr7	116560379	116560380	+	ENST00000405348	C1853	m5C	C6	5'-GGCCUCCAAGGAGGGG-3'	..((((....)))).. ( -5.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	16	chr7:116560375-116560390	CAV1	HGNC:1527	ENSG00000105974	GGCCUCCAAGGAGGGG
hsa_m5C_3458	chr7	116560380	116560381	+	ENST00000405348	C1854	m5C	C7	5'-GGCCUCCAAGGAGGGG-3'	..((((....)))).. ( -5.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	16	chr7:116560375-116560390	CAV1	HGNC:1527	ENSG00000105974	GGCCUCCAAGGAGGGG
hsa_m5C_3459	chr10	102163551	102163552	+	ENST00000405356	C3648	m5C	C16	5'-GGCCUGACGGUAUGGCUGCAGG-3'	..((((.((((...)))))))) ( -7.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr10:102163537-102163558	NOLC1	HGNC:15608	ENSG00000166197	GGCCUGACGGUAUGGCUGCAGG
hsa_m5C_3460	chr22	19851805	19851806	-	ENST00000405640	C1125	m5C	C26	5'-GGCGCCUAACAGGCCGAGCCCAGGCCUGG-3'	.........((((((.......)))))). (-12.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	29	chr22:19851803-19851831	RTL10	HGNC:26112	ENSG00000215012	GGCGCCUAACAGGCCGAGCCCAGGCCUGG
hsa_m5C_3461	chr22	19851921	19851922	-	ENST00000405640	C1009	m5C	C6	5'-GGCUACUGGACCGCUUCUUGGCCCAGCUGG-3'	..(((((((.(((.....))).)))).))) ( -7.90)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr22:19851898-19851927	RTL10	HGNC:26112	ENSG00000215012	GGCUACUGGACCGCUUCUUGGCCCAGCUGG
hsa_m5C_3462	chr2	240561046	240561047	+	ENST00000405954	C691	m5C	C5	5'-GGCACCGCGGCCUCAGCCUGGCGAAGG-3'	.....((((((....)))..))).... ( -6.60)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr2:240561043-240561069	DUSP28	HGNC:33237	ENSG00000188542	GGCACCGCGGCCUCAGCCUGGCGAAGG
hsa_m5C_3463	chr17	18317561	18317562	+	ENST00000406438	C2270	m5C	C11	5'-GGAAGGAGAGCGAUGGUCAGUUGG-3'	..........((((.....)))). ( -0.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr17:18317552-18317575	SMCR8	HGNC:17921	ENSG00000176994	GGAAGGAGAGCGAUGGUCAGUUGG
hsa_m5C_3464	chr17	18325961	18325962	+	ENST00000406438	C6203	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr17:18325957-18325971	SMCR8	HGNC:17921	ENSG00000176994	GGAGGCUGAGGCAGG
hsa_m5C_3465	chr17	18325967	18325968	+	ENST00000406438	C6209	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr17:18325957-18325971	SMCR8	HGNC:17921	ENSG00000176994	GGAGGCUGAGGCAGG
hsa_m5C_3466	chr11	28332674	28332675	+	ENST00000406787	C3472	m5C	C3	5'-GGCGGGCAUGGUGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	22344696	14	chr11:28332673-28332686	METTL15	HGNC:26606	ENSG00000169519	GGCGGGCAUGGUGG
hsa_m5C_3467	chr22	21923190	21923191	-	ENST00000407142	C1823	m5C	C4	5'-GGGCGGGAACCAGGGAGAAGGG-3'	((.......))........... ( -1.50)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	22	chr22:21923173-21923194	PPM1F	HGNC:19388	ENSG00000100034	GGGCGGGAACCAGGGAGAAGGG
hsa_m5C_3468	chr7	886020	886021	+	ENST00000407192	C2479	m5C	C22	5'-GGGAGCGCGGUGGCGAGGGCACGUGG-3'	.....((((...((....)).)))). ( -5.60)	loop	mRNA	T24;liver,T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	26	chr7:886000-886025	GET4	HGNC:21690	ENSG00000239857	GGGAGCGCGGUGGCGAGGGCACGUGG
hsa_m5C_3469	chr2	241633686	241633687	-	ENST00000407315	C611	m5C	C3	5'-GGCGGCCCAGGAGG-3'	((....))...... ( -0.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	14	chr2:241633676-241633689	THAP4	HGNC:23187	ENSG00000176946	GGCGGCCCAGGAGG
hsa_m5C_3470	chr2	241633682	241633683	-	ENST00000407315	C615	m5C	C7	5'-GGCGGCCCAGGAGG-3'	((....))...... ( -0.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr2:241633676-241633689	THAP4	HGNC:23187	ENSG00000176946	GGCGGCCCAGGAGG
hsa_m5C_3471	chr22	38866866	38866867	-	ENST00000407418	C607	m5C	C18	5'-GGGCGCCGGGCAGGGGGCCGGGG-3'	.(((.((......)).))).... (-10.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	23	chr22:38866862-38866884	CBX6	HGNC:1556	ENSG00000183741	GGGCGCCGGGCAGGGGGCCGGGG
hsa_m5C_3472	chr22	38866865	38866866	-	ENST00000407418	C608	m5C	C19	5'-GGGCGCCGGGCAGGGGGCCGGGG-3'	.(((.((......)).))).... (-10.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	23	chr22:38866862-38866884	CBX6	HGNC:1556	ENSG00000183741	GGGCGCCGGGCAGGGGGCCGGGG
hsa_m5C_3473	chr7	158941926	158941927	+	ENST00000407559	C2959	m5C	C4	5'-G^GCCGGCUGUUCGGACGG-3'	..((((....)))).... ( -3.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr7:158934549-158934549;158941925-158941941	DYNC2I1	HGNC:21862	ENSG00000126870	GGCCGGCUGUUCGGACGG
hsa_m5C_3474	chr19	7962919	7962920	-	ENST00000407627	C1707	m5C	C16	5'-GGGAAUGGCGGCGGGCCCGUCCAGCGUGGG-3'	.(((..(((.....)))..)))........ ( -8.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	30	chr19:7962906-7962935	ELAVL1	HGNC:3312	ENSG00000066044	GGGAAUGGCGGCGGGCCCGUCCAGCGUGGG
hsa_m5C_3475	chr19	7962914	7962915	-	ENST00000407627	C1712	m5C	C21	5'-GGGAAUGGCGGCGGGCCCGUCCAGCGUGGG-3'	.(((..(((.....)))..)))........ ( -8.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	30	chr19:7962906-7962935	ELAVL1	HGNC:3312	ENSG00000066044	GGGAAUGGCGGCGGGCCCGUCCAGCGUGGG
hsa_m5C_3476	chr19	7962913	7962914	-	ENST00000407627	C1713	m5C	C22	5'-GGGAAUGGCGGCGGGCCCGUCCAGCGUGGG-3'	.(((..(((.....)))..)))........ ( -8.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	30	chr19:7962906-7962935	ELAVL1	HGNC:3312	ENSG00000066044	GGGAAUGGCGGCGGGCCCGUCCAGCGUGGG
hsa_m5C_3477	chr2	26189205	26189206	+	ENST00000407684	C4700	m5C	C5	5'-GGCACAGGAGGGUACAGUUGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	21	chr2:26189202-26189222	GAREM2	HGNC:27172	ENSG00000157833	GGCACAGGAGGGUACAGUUGG
hsa_m5C_3478	chr2	232549752	232549753	-	ENST00000408957	C805	m5C	C22	5'-GGCCGAAGGCUAGGCCUCCUGCGG-3'	((((........))))........ ( -8.00)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr2:232549751-232549774	TIGD1	HGNC:14523	ENSG00000221944	GGCCGAAGGCUAGGCCUCCUGCGG
hsa_m5C_3479	chr8	47738036	47738037	-	ENST00000408965	C128	m5C	C4	5'-GGGCCGGGCGGGCAAGCCGGG-3'	...((.(((......))).)) ( -8.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969	21	chr8:47738020-47738040	CEBPD	HGNC:1835	ENSG00000221869	GGGCCGGGCGGGCAAGCCGGG
hsa_m5C_3480	chr8	47738035	47738036	-	ENST00000408965	C129	m5C	C5	5'-GGGCCGGGCGGGCAAGCCGGG-3'	...((.(((......))).)) ( -8.50)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	21	chr8:47738020-47738040	CEBPD	HGNC:1835	ENSG00000221869	GGGCCGGGCGGGCAAGCCGGG
hsa_m5C_3481	chr8	47738031	47738032	-	ENST00000408965	C133	m5C	C9	5'-GGGCCGGGCGGGCAAGCCGGG-3'	...((.(((......))).)) ( -8.50)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	21	chr8:47738020-47738040	CEBPD	HGNC:1835	ENSG00000221869	GGGCCGGGCGGGCAAGCCGGG
hsa_m5C_3482	chr8	47738022	47738023	-	ENST00000408965	C142	m5C	C18	5'-GGGCCGGGCGGGCAAGCCGGG-3'	...((.(((......))).)) ( -8.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr8:47738020-47738040	CEBPD	HGNC:1835	ENSG00000221869	GGGCCGGGCGGGCAAGCCGGG
hsa_m5C_3483	chr8	47737836	47737837	-	ENST00000408965	C328	m5C	C9	5'-GGGCGGCGCGGGGCCCCUGG-3'	(((.(((.....)))))).. ( -8.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr8:47737826-47737845	CEBPD	HGNC:1835	ENSG00000221869	GGGCGGCGCGGGGCCCCUGG
hsa_m5C_3484	chr8	47737831	47737832	-	ENST00000408965	C333	m5C	C14	5'-GGGCGGCGCGGGGCCCCUGG-3'	(((.(((.....)))))).. ( -8.50)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr8:47737826-47737845	CEBPD	HGNC:1835	ENSG00000221869	GGGCGGCGCGGGGCCCCUGG
hsa_m5C_3485	chr8	47737830	47737831	-	ENST00000408965	C334	m5C	C15	5'-GGGCGGCGCGGGGCCCCUGG-3'	(((.(((.....)))))).. ( -8.50)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr8:47737826-47737845	CEBPD	HGNC:1835	ENSG00000221869	GGGCGGCGCGGGGCCCCUGG
hsa_m5C_3486	chr9	137200503	137200504	-	ENST00000409012	C238	m5C	C3	5'-GGCGCGGCGGGGGCGCGG-3'	.((((.......)))).. ( -7.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	18	chr9:137200489-137200506	TPRN	HGNC:26894	ENSG00000176058	GGCGCGGCGGGGGCGCGG
hsa_m5C_3487	chr9	137200492	137200493	-	ENST00000409012	C249	m5C	C14	5'-GGCGCGGCGGGGGCGCGG-3'	.((((.......)))).. ( -7.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	18	chr9:137200489-137200506	TPRN	HGNC:26894	ENSG00000176058	GGCGCGGCGGGGGCGCGG
hsa_m5C_3488	chr9	137200603	137200604	-	ENST00000409012	C138	m5C	C10	5'-GGGCGGGGGCGCGGGGCCCGGGG-3'	......((((.....)))).... ( -8.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	23	chr9:137200591-137200613	TPRN	HGNC:26894	ENSG00000176058	GGGCGGGGGCGCGGGGCCCGGGG
hsa_m5C_3489	chr9	137200595	137200596	-	ENST00000409012	C146	m5C	C18	5'-GGGCGGGGGCGCGGGGCCCGGGG-3'	......((((.....)))).... ( -8.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	23	chr9:137200591-137200613	TPRN	HGNC:26894	ENSG00000176058	GGGCGGGGGCGCGGGGCCCGGGG
hsa_m5C_3490	chr2	69461887	69461888	-	ENST00000409085	C17266	m5C	C7	5'-GGAGGCCAGGCGCGG-3'	....((.....)).. ( -0.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	15	chr2:69461880-69461894	AAK1	HGNC:19679	ENSG00000115977	GGAGGCCAGGCGCGG
hsa_m5C_3491	chr2	69461883	69461884	-	ENST00000409085	C17270	m5C	C11	5'-GGAGGCCAGGCGCGG-3'	....((.....)).. ( -0.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	15	chr2:69461880-69461894	AAK1	HGNC:19679	ENSG00000115977	GGAGGCCAGGCGCGG
hsa_m5C_3492	chr2	69463629	69463630	-	ENST00000409085	C15524	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	31358969	15	chr2:69463621-69463635	AAK1	HGNC:19679	ENSG00000115977	GGAGGCUGAGGCAGG
hsa_m5C_3493	chr2	231711907	231711908	+	ENST00000409115	C318	m5C	C7	5'-GGGGAGCAGGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	13	chr2:231711902-231711914	PTMA	HGNC:9623	ENSG00000187514	GGGGAGCAGGAGG
hsa_m5C_3494	chr2	105399364	105399365	-	ENST00000409177	C303	m5C	C18	5'-GGGACCAGGCAGAGAUCCCGGCGUGGG-3'	....(((.((..........)).))). ( -6.70)	bulge	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	27	chr2:105399356-105399382	FHL2	HGNC:3703	ENSG00000115641	GGGACCAGGCAGAGAUCCCGGCGUGGG
hsa_m5C_3495	chr2	105399363	105399364	-	ENST00000409177	C304	m5C	C19	5'-GGGACCAGGCAGAGAUCCCGGCGUGGG-3'	....(((.((..........)).))). ( -6.70)	bulge	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	27	chr2:105399356-105399382	FHL2	HGNC:3703	ENSG00000115641	GGGACCAGGCAGAGAUCCCGGCGUGGG
hsa_m5C_3496	chr2	105399360	105399361	-	ENST00000409177	C307	m5C	C22	5'-GGGACCAGGCAGAGAUCCCGGCGUGGG-3'	....(((.((..........)).))). ( -6.70)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	27	chr2:105399356-105399382	FHL2	HGNC:3703	ENSG00000115641	GGGACCAGGCAGAGAUCCCGGCGUGGG
hsa_m5C_3497	chr2	74101668	74101669	+	ENST00000409262	C5553	m5C	C3	5'-GGCGGUGGUGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	11	chr2:74101667-74101677	TET3	HGNC:28313	ENSG00000187605	GGCGGUGGUGG
hsa_m5C_3498	chr2	74046643	74046644	+	ENST00000409262	C1399	m5C	C18	5'-GGGGACCCCGGCCAGGGCCUGAGGG-3'	.(((.(((......))))))..... ( -7.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr2:74046627-74046651	TET3	HGNC:28313	ENSG00000187605	GGGGACCCCGGCCAGGGCCUGAGGG
hsa_m5C_3499	chr8	144435068	144435069	-	ENST00000409379	C2980	m5C	C13	5'-GGAAAGAGGGGGCCCUGCUGG-3'	....(((((....))).)).. ( -2.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr8:144435061-144435081	TONSL	HGNC:7801	ENSG00000160949	GGAAAGAGGGGGCCCUGCUGG
hsa_m5C_3500	chr8	144435067	144435068	-	ENST00000409379	C2981	m5C	C14	5'-GGAAAGAGGGGGCCCUGCUGG-3'	....(((((....))).)).. ( -2.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr8:144435061-144435081	TONSL	HGNC:7801	ENSG00000160949	GGAAAGAGGGGGCCCUGCUGG
hsa_m5C_3501	chr17	1724970	1724971	+	ENST00000409644	C268	m5C	C4	5'-GGGCAGCGGGGGGCGGG-3'	.....((.....))... ( -1.50)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	17	chr17:1724968-1724984	WDR81	HGNC:26600	ENSG00000167716	GGGCAGCGGGGGGCGGG
hsa_m5C_3502	chr17	1724973	1724974	+	ENST00000409644	C271	m5C	C7	5'-GGGCAGCGGGGGGCGGG-3'	.....((.....))... ( -1.50)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	17	chr17:1724968-1724984	WDR81	HGNC:26600	ENSG00000167716	GGGCAGCGGGGGGCGGG
hsa_m5C_3503	chr17	1724980	1724981	+	ENST00000409644	C278	m5C	C14	5'-GGGCAGCGGGGGGCGGG-3'	.....((.....))... ( -1.50)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	17	chr17:1724968-1724984	WDR81	HGNC:26600	ENSG00000167716	GGGCAGCGGGGGGCGGG
hsa_m5C_3504	chr17	1727946	1727947	+	ENST00000409644	C3244	m5C	C13	5'-GGUGCGGCUGGGCCUGCAGG-3'	..((((((...))).))).. ( -5.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr17:1727935-1727954	WDR81	HGNC:26600	ENSG00000167716	GGUGCGGCUGGGCCUGCAGG
hsa_m5C_3505	chr16	1443990	1443991	-	ENST00000409671	C566	m5C	C8	5'-GGACCCUCAGGGGCAUCGG-3'	...(((....)))...... ( -4.00)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	19	chr16:1443980-1443998	CCDC154	HGNC:34454	ENSG00000197599	GGACCCUCAGGGGCAUCGG
hsa_m5C_3506	chr9	137070508	137070509	-	ENST00000409687	C49	m5C	C5	5'-GGGGCCGCGCUGGGACGCACGCGGGUGGACGAGGGG-3'	....(((((.((.....)))))))............ ( -9.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	36	chr9:137070478-137070513	SAPCD2	HGNC:28055	ENSG00000186193	GGGGCCGCGCUGGGACGCACGCGGGUGGACGAGGGG
hsa_m5C_3507	chr9	137070507	137070508	-	ENST00000409687	C50	m5C	C6	5'-GGGGCCGCGCUGGGACGCACGCGGGUGGACGAGGGG-3'	....(((((.((.....)))))))............ ( -9.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	36	chr9:137070478-137070513	SAPCD2	HGNC:28055	ENSG00000186193	GGGGCCGCGCUGGGACGCACGCGGGUGGACGAGGGG
hsa_m5C_3508	chr11	77214801	77214802	+	ENST00000409709	C7044	m5C	C6	5'-GGCAGCGAGGCUGGGCUGG-3'	..((((........)))). ( -5.90)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	19	chr11:77214797-77214815	MYO7A	HGNC:7606	ENSG00000137474	GGCAGCGAGGCUGGGCUGG
hsa_m5C_3509	chr2	84971369	84971370	+	ENST00000409785	C210	m5C	C26	5'-GGGAGUCGAGUGGGAGUCGGCCGGCCGGCGCGGG-3'	....((((.((.((......)).))))))..... (-10.40)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	34	chr2:84971345-84971378	KCMF1	HGNC:20589	ENSG00000176407	GGGAGUCGAGUGGGAGUCGGCCGGCCGGCGCGGG
hsa_m5C_3510	chr9	137077689	137077690	+	ENST00000409858	C174	m5C	C3	5'-GGCGGCGGAGG-3'	NA	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database	28418038	11	chr9:137077688-137077698	UAP1L1	HGNC:28082	ENSG00000197355	GGCGGCGGAGG
hsa_m5C_3511	chr9	137077692	137077693	+	ENST00000409858	C177	m5C	C6	5'-GGCGGCGGAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF;MRC-5;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr9:137077688-137077698	UAP1L1	HGNC:28082	ENSG00000197355	GGCGGCGGAGG
hsa_m5C_3512	chr16	30711847	30711848	+	ENST00000411466	C2042	m5C	C7	5'-GGAGGACCGGAGUGAGG-3'	((....))......... ( -0.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr16:30711842-30711858	SRCAP	HGNC:16974	ENSG00000080603	GGAGGACCGGAGUGAGG
hsa_m5C_3513	chr16	30739340	30739341	+	ENST00000411466	C9837	m5C	C3	5'-GGCCAGGCGGGUUGG-3'	((((.....)))).. ( -2.20)	loop	mRNA	heart	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	15	chr16:30739339-30739353	SRCAP	HGNC:16974	ENSG00000080603	GGCCAGGCGGGUUGG
hsa_m5C_3514	chr16	30739341	30739342	+	ENST00000411466	C9838	m5C	C4	5'-GGCCAGGCGGGUUGG-3'	((((.....)))).. ( -2.20)	loop	mRNA	heart	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	15	chr16:30739339-30739353	SRCAP	HGNC:16974	ENSG00000080603	GGCCAGGCGGGUUGG
hsa_m5C_3515	chr16	30739345	30739346	+	ENST00000411466	C9842	m5C	C8	5'-GGCCAGGCGGGUUGG-3'	((((.....)))).. ( -2.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr16:30739339-30739353	SRCAP	HGNC:16974	ENSG00000080603	GGCCAGGCGGGUUGG
hsa_m5C_3516	chr16	30700665	30700666	+	ENST00000411466	C378	m5C	C17	5'-GGGACGCCCUGGUGGGCCCCGGG-3'	(((..((((....)))))))... (-12.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr16:30700650-30700672	SRCAP	HGNC:16974	ENSG00000080603	GGGACGCCCUGGUGGGCCCCGGG
hsa_m5C_3517	chr21	44818040	44818041	-	ENST00000411651	C89	m5C	C14	5'-GGCGGGAGAGCGGCGGG-3'	.((......))...... ( -1.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr21:44818038-44818054	SUMO3	HGNC:11124	ENSG00000184900	GGCGGGAGAGCGGCGGG
hsa_m5C_3518	chr10	32346864	32346865	+	ENST00000412085	C69	m5C	C11	5'-GGAAAACCGGCAGCGGCUUCGAGG-3'	.(((..(((....))).))).... ( -4.20)	loop	lncRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	24	chr10:32346855-32346878	EPC1-AS2	HGNC:56646	ENSG00000233825	GGAAAACCGGCAGCGGCUUCGAGG
hsa_m5C_3519	chr11	66616643	66616644	+	ENST00000412278	C19	m5C	C7	5'-GGAGGACUGCCGGUCGUUCGG-3'	(((.((((...)))).))).. ( -6.70)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	21	chr11:66616638-66616658	RBM14-RBM4	HGNC:38840	ENSG00000248643	GGAGGACUGCCGGUCGUUCGG
hsa_m5C_3520	chr19	55259000	55259001	-	ENST00000412770	C17	m5C	C10	5'-GGAUAGUGGCGGAGGGAGCCGGG-3'	......((((.......)))).. ( -4.70)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	23	chr19:55258988-55259010	PPP6R1	HGNC:29195	ENSG00000105063	GGAUAGUGGCGGAGGGAGCCGGG
hsa_m5C_3521	chr19	55258490	55258491	-	ENST00000412770	C527	m5C	C11	5'-GGCGGCGGGGCGGGGGGGG-3'	.((......))........ ( -2.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	19	chr19:55258483-55258501	PPP6R1	HGNC:29195	ENSG00000105063	GGCGGCGGGGCGGGGGGGG
hsa_m5C_3522	chr19	55230047	55230048	-	ENST00000412770	C3715	m5C	C5	5'-GGGACGGCCCAGCGUGGGUGGGGGUGCCAGAGGGUCCCGAGUGGG-3'	(((((.(((((...))))).((....)).....)))))....... (-14.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr19:55230008-55230052	PPP6R1	HGNC:29195	ENSG00000105063	GGGACGGCCCAGCGUGGGUGGGGGUGCCAGAGGGUCCCGAGUGGG
hsa_m5C_3523	chr17	66788924	66788925	+	ENST00000413366	C2039	m5C	C5	5'-GGAUCGACUGGGAAAAACUGGAGAACAGGG-3'	.................(((.....))).. ( -2.60)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr17:66788921-66788950	PRKCA	HGNC:9393	ENSG00000154229	GGAUCGACUGGGAAAAACUGGAGAACAGGG
hsa_m5C_3524	chr17	66788927	66788928	+	ENST00000413366	C2042	m5C	C8	5'-GGAUCGACUGGGAAAAACUGGAGAACAGGG-3'	.................(((.....))).. ( -2.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr17:66788921-66788950	PRKCA	HGNC:9393	ENSG00000154229	GGAUCGACUGGGAAAAACUGGAGAACAGGG
hsa_m5C_3525	chr2	110212532	110212533	-	ENST00000414416	C1639	m5C	C3	5'-GGCGGCAGCCAUGGCGG-3'	(((....)))....... ( -5.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr2:110212519-110212535	MTLN	HGNC:27339	ENSG00000175701	GGCGGCAGCCAUGGCGG
hsa_m5C_3526	chr1	224418355	224418356	-	ENST00000414423	C1615	m5C	C7	5'-GGCAGGCGGUGG-3'	NA	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	12	chr1:224418351-224418362	WDR26	HGNC:21208	ENSG00000162923	GGCAGGCGGUGG
hsa_m5C_3527	chr9	136805145	136805146	-	ENST00000414656	C1167	m5C	C7	5'-GGUGGACCCGGAGUGAGUGG-3'	((.....))........... ( -0.30)	loop	lncRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr9:136805133-136805152	CCDC183-AS1	HGNC:44105	ENSG00000228544	GGUGGACCCGGAGUGAGUGG
hsa_m5C_3528	chr14	104894762	104894763	+	ENST00000414716	C4743	m5C	C26	5'-GGAGCCUGGACCUGCUCACAGGAAACAGG-3'	....((((..((((....))))...)))) ( -9.30)	loop	mRNA	frontal_cortex,293T,liver,lung,Testis,HeLa,T24;293T;HeLa,siControl;HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	30872485;28418038;31061524;38168991	29	chr14:104894738-104894766	CEP170B	HGNC:20362	ENSG00000099814	GGAGCCUGGACCUGCUCACAGGAAACAGG
hsa_m5C_3529	chr14	104886058	104886059	+	ENST00000414716	C2237	m5C	C6	5'-GGGCUCCCCUGGGGGUCAGAAGUGGGUGUCCCGCUGGG-3'	.((((((....))))))...((((((...))))))... (-15.50)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	38	chr14:104886054-104886091	CEP170B	HGNC:20362	ENSG00000099814	GGGCUCCCCUGGGGGUCAGAAGUGGGUGUCCCGCUGGG
hsa_m5C_3530	chr14	104886059	104886060	+	ENST00000414716	C2238	m5C	C7	5'-GGGCUCCCCUGGGGGUCAGAAGUGGGUGUCCCGCUGGG-3'	.((((((....))))))...((((((...))))))... (-15.50)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	38	chr14:104886054-104886091	CEP170B	HGNC:20362	ENSG00000099814	GGGCUCCCCUGGGGGUCAGAAGUGGGUGUCCCGCUGGG
hsa_m5C_3531	chr14	104886060	104886061	+	ENST00000414716	C2239	m5C	C8	5'-GGGCUCCCCUGGGGGUCAGAAGUGGGUGUCCCGCUGGG-3'	.((((((....))))))...((((((...))))))... (-15.50)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	38	chr14:104886054-104886091	CEP170B	HGNC:20362	ENSG00000099814	GGGCUCCCCUGGGGGUCAGAAGUGGGUGUCCCGCUGGG
hsa_m5C_3532	chr14	104865334	104865335	+	ENST00000414716	C68	m5C	C21	5'-GGGCUCGGCCCGGGCUGCCACGAGCGUGCGGGCCUCGCCGGG-3'	.(((..((((((.((.((.....)))).))))))..)))... (-23.80)	loop	mRNA	T24;293T;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	31358969;38168991	42	chr14:104865315-104865356	CEP170B	HGNC:20362	ENSG00000099814	GGGCUCGGCCCGGGCUGCCACGAGCGUGCGGGCCUCGCCGGG
hsa_m5C_3533	chr11	2885165	2885166	-	ENST00000414822	C606	m5C	C5	5'-GGCCCGUCGCGGUCGCGGUGG-3'	...(((((((....))))))) ( -6.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr11:2885150-2885170	CDKN1C	HGNC:1786	ENSG00000129757	GGCCCGUCGCGGUCGCGGUGG
hsa_m5C_3534	chr11	2885156	2885157	-	ENST00000414822	C615	m5C	C14	5'-GGCCCGUCGCGGUCGCGGUGG-3'	...(((((((....))))))) ( -6.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr11:2885150-2885170	CDKN1C	HGNC:1786	ENSG00000129757	GGCCCGUCGCGGUCGCGGUGG
hsa_m5C_3535	chr11	2885154	2885155	-	ENST00000414822	C617	m5C	C16	5'-GGCCCGUCGCGGUCGCGGUGG-3'	...(((((((....))))))) ( -6.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr11:2885150-2885170	CDKN1C	HGNC:1786	ENSG00000129757	GGCCCGUCGCGGUCGCGGUGG
hsa_m5C_3536	chr11	2885104	2885105	-	ENST00000414822	C667	m5C	C4	5'-GGCCUCGAGGAGGCGCCGG-3'	.(((((...)))))..... ( -7.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	19	chr11:2885090-2885108	CDKN1C	HGNC:1786	ENSG00000129757	GGCCUCGAGGAGGCGCCGG
hsa_m5C_3537	chr1	16535303	16535304	-	ENST00000415386	C346	m5C	C3	5'-GGCCCGGGUUCGAUUCCCGGUCAGGG-3'	((((.(((.......))))))).... ( -9.80)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr1:16535281-16535306	LINC01783	HGNC:52573	ENSG00000233421	GGCCCGGGUUCGAUUCCCGGUCAGGG
hsa_m5C_3538	chr1	16535302	16535303	-	ENST00000415386	C347	m5C	C4	5'-GGCCCGGGUUCGAUUCCCGGUCAGGG-3'	((((.(((.......))))))).... ( -9.80)	loop	lncRNA	HEK293;cytosolic	Modomics:(Low);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	29106616;30526041	26	chr1:16535281-16535306	LINC01783	HGNC:52573	ENSG00000233421	GGCCCGGGUUCGAUUCCCGGUCAGGG
hsa_m5C_3539	chr1	16535301	16535302	-	ENST00000415386	C348	m5C	C5	5'-GGCCCGGGUUCGAUUCCCGGUCAGGG-3'	((((.(((.......))))))).... ( -9.80)	loop	lncRNA	HEK293;cytosolic	Modomics:(Low);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	29106616;30526041	26	chr1:16535281-16535306	LINC01783	HGNC:52573	ENSG00000233421	GGCCCGGGUUCGAUUCCCGGUCAGGG
hsa_m5C_3540	chr1	16535290	16535291	-	ENST00000415386	C359	m5C	C16	5'-GGCCCGGGUUCGAUUCCCGGUCAGGG-3'	((((.(((.......))))))).... ( -9.80)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr1:16535281-16535306	LINC01783	HGNC:52573	ENSG00000233421	GGCCCGGGUUCGAUUCCCGGUCAGGG
hsa_m5C_3541	chr1	16535289	16535290	-	ENST00000415386	C360	m5C	C17	5'-GGCCCGGGUUCGAUUCCCGGUCAGGG-3'	((((.(((.......))))))).... ( -9.80)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr1:16535281-16535306	LINC01783	HGNC:52573	ENSG00000233421	GGCCCGGGUUCGAUUCCCGGUCAGGG
hsa_m5C_3542	chr1	16535288	16535289	-	ENST00000415386	C361	m5C	C18	5'-GGCCCGGGUUCGAUUCCCGGUCAGGG-3'	((((.(((.......))))))).... ( -9.80)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr1:16535281-16535306	LINC01783	HGNC:52573	ENSG00000233421	GGCCCGGGUUCGAUUCCCGGUCAGGG
hsa_m5C_3543	chr1	16535284	16535285	-	ENST00000415386	C365	m5C	C22	5'-GGCCCGGGUUCGAUUCCCGGUCAGGG-3'	((((.(((.......))))))).... ( -9.80)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr1:16535281-16535306	LINC01783	HGNC:52573	ENSG00000233421	GGCCCGGGUUCGAUUCCCGGUCAGGG
hsa_m5C_3544	chr2	208254228	208254229	-	ENST00000415913	C94	m5C	C18	5'-GGCCAUAAGGACGGGUGCAGG-3'	.(((.........)))..... ( -1.10)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	21	chr2:208254226-208254246	IDH1	HGNC:5382	ENSG00000138413	GGCCAUAAGGACGGGUGCAGG
hsa_m5C_3545	chr7	108569590	108569591	-	ENST00000415914	C116	m5C	C10	5'-GGCCCCGGUCUCCAGGGG-3'	..((((........)))) ( -6.90)	loop	mRNA	293T;Testis	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991	38168991	18	chr7:108569583-108569600	THAP5	HGNC:23188	ENSG00000177683	GGCCCCGGUCUCCAGGGG
hsa_m5C_3546	chr11	2129486	2129487	-	ENST00000416167	C5210	m5C	C13	5'-GGAGUGGGUGUUCCCGGGGG-3'	....((((....)))).... ( -4.30)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	20	chr11:2129480-2129499	IGF2	HGNC:5466	ENSG00000167244	GGAGUGGGUGUUCCCGGGGG
hsa_m5C_3547	chr11	2129485	2129486	-	ENST00000416167	C5211	m5C	C14	5'-GGAGUGGGUGUUCCCGGGGG-3'	....((((....)))).... ( -4.30)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	20	chr11:2129480-2129499	IGF2	HGNC:5466	ENSG00000167244	GGAGUGGGUGUUCCCGGGGG
hsa_m5C_3548	chr7	67308938	67308939	+	ENST00000416602	C367	m5C	C15	5'-GGAUGUAAAG^GACUCGGGG-3'	NA	loop	lncRNA	HeLa,rip antibody: ALYREF;frontal_cortex	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	19	chr7:67306074-67306083;67308935-67308943	NA	NA	ENSG00000291153	GGAUGUAAAGGACUCGGGG
hsa_m5C_3549	chr3	51944201	51944202	+	ENST00000417220	C785	m5C	C5	5'-GGAACCGCUGGGGCCGUGUG^GGAGAGG-3'	((..((...))..))............ ( -4.80)	bulge	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	27	chr3:51944198-51944217;51944390-51944396	PARP3	HGNC:273	ENSG00000041880	GGAACCGCUGGGGCCGUGUGGGAGAGG
hsa_m5C_3550	chr16	66941802	66941803	+	ENST00000417689	C2284	m5C	C10	5'-GGAAAUGGACAGAGAGGCCUCCCAGG-3'	.....(((...(((....)))))).. ( -2.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr16:66941794-66941819	CES2	HGNC:1864	ENSG00000172831	GGAAAUGGACAGAGAGGCCUCCCAGG
hsa_m5C_3551	chr6	32940942	32940943	-	ENST00000418107	C86	m5C	C16	5'-GGGGGGUCAAGGGACCCGGG-3'	...(((((....)))))... ( -8.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	20	chr6:32940939-32940958	HLA-DMB	HGNC:4935	ENSG00000242574	GGGGGGUCAAGGGACCCGGG
hsa_m5C_3552	chr7	74122418	74122419	+	ENST00000418310	C3254	m5C	C13	5'-GGCCCGUGGGACCAUGACUUAGGGAGGUGG-3'	..(((..((........))..)))...... ( -6.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr7:74122407-74122436	LIMK1	HGNC:6613	ENSG00000106683	GGCCCGUGGGACCAUGACUUAGGGAGGUGG
hsa_m5C_3553	chr3	186584466	186584467	+	ENST00000418776	C291	m5C	C5	5'-GGAGCGAAGCUAUGGAAGAAAGGGGAAGGG-3'	..(((...)))................... ( -0.70)	bulge	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr3:186584463-186584492	NA	NA	ENSG00000283149	GGAGCGAAGCUAUGGAAGAAAGGGGAAGGG
hsa_m5C_3554	chr3	186584471	186584472	+	ENST00000418776	C296	m5C	C10	5'-GGAGCGAAGCUAUGGAAGAAAGGGGAAGGG-3'	..(((...)))................... ( -0.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr3:186584463-186584492	NA	NA	ENSG00000283149	GGAGCGAAGCUAUGGAAGAAAGGGGAAGGG
hsa_m5C_3555	chr9	127715627	127715628	-	ENST00000419060	C1469	m5C	C8	5'-GGCCGGGCGGCUUUUUGG-3'	((((....))))...... ( -4.30)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr9:127715618-127715635	PTRH1	HGNC:27039	ENSG00000187024	GGCCGGGCGGCUUUUUGG
hsa_m5C_3556	chr1	211259643	211259644	+	ENST00000419091	C279	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	22344696	11	chr1:211259639-211259649	RCOR3	HGNC:25594	ENSG00000117625	GGCGGCGGCGG
hsa_m5C_3557	chr9	129505801	129505802	+	ENST00000419300	C2680	m5C	C10	5'-GGGGUUGGGCGUUGGGGAGCAGUUUGCUCAGCUGUAAAAUGGG-3'	..((((((((((((.....)))..))))))))).......... (-11.40)	bulge	lncRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	43	chr9:129505793-129505835	LINC00963	HGNC:48716	ENSG00000204054	GGGGUUGGGCGUUGGGGAGCAGUUUGCUCAGCUGUAAAAUGGG
hsa_m5C_3558	chr9	128284534	128284535	+	ENST00000419867	C356	m5C	C8	5'-GGCCAGGCUGAUGGGACCAGCGAGG-3'	..((..((((.......))))..)) ( -6.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	25	chr9:128284528-128284552	SWI5	HGNC:31412	ENSG00000175854	GGCCAGGCUGAUGGGACCAGCGAGG
hsa_m5C_3559	chr9	128276389	128276390	+	ENST00000419867	C149	m5C	C15	5'-GGGGCCUCGGACCCCAGG-3'	((((.......))))... ( -6.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	18	chr9:128276376-128276393	SWI5	HGNC:31412	ENSG00000175854	GGGGCCUCGGACCCCAGG
hsa_m5C_3560	chr19	54128332	54128333	+	ENST00000419967	C1498	m5C	C14	5'-GGAGCGGCUGGGGCUGACGGAGAUCCGG-3'	....((((....)))).(((....))). ( -6.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr19:54128320-54128347	PRPF31	HGNC:15446	ENSG00000105618	GGAGCGGCUGGGGCUGACGGAGAUCCGG
hsa_m5C_3561	chr19	54128343	54128344	+	ENST00000419967	C1509	m5C	C25	5'-GGAGCGGCUGGGGCUGACGGAGAUCCGG-3'	....((((....)))).(((....))). ( -6.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr19:54128320-54128347	PRPF31	HGNC:15446	ENSG00000105618	GGAGCGGCUGGGGCUGACGGAGAUCCGG
hsa_m5C_3562	chr19	49689640	49689641	+	ENST00000420022	C48	m5C	C20	5'-GGUGCGGGAAGCGGGGACCCGG-3'	....((((.........)))). ( -5.10)	loop	mRNA	T24;spleen,T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	22	chr19:49689622-49689643	ADM5	HGNC:27293	ENSG00000224420	GGUGCGGGAAGCGGGGACCCGG
hsa_m5C_3563	chr19	35718300	35718301	+	ENST00000420124	C299	m5C	C12	5'-GGGGCCGGGGACGGGGUCGGGG-3'	..((((........)))).... ( -5.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	22	chr19:35718290-35718311	KMT2B	HGNC:15840	ENSG00000272333	GGGGCCGGGGACGGGGUCGGGG
hsa_m5C_3564	chr17	7668797	7668798	-	ENST00000420246	C2259	m5C	C3	5'-GGCUGGAGUGGAGUGG-3'	.(((.......))).. ( -0.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr17:7668785-7668800	TP53	HGNC:11998	ENSG00000141510	GGCUGGAGUGGAGUGG
hsa_m5C_3565	chr1	2193788	2193789	-	ENST00000420515	C319	m5C	C37	5'-GGGGCCCGGGCCGUUCCUACCGGCUGCUUCACGGGGCAGGAGG-3'	(((((.......)))))..((..((((((....))))))..)) (-13.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	43	chr1:2193783-2193825	FAAP20	HGNC:26428	ENSG00000162585	GGGGCCCGGGCCGUUCCUACCGGCUGCUUCACGGGGCAGGAGG
hsa_m5C_3566	chr6	169802632	169802633	+	ENST00000420557	C2342	m5C	C7	5'-GGGAGGCCGAGGUGG-3'	((....))....... ( -1.60)	loop	lncRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr6:169802627-169802641	LINC00574	HGNC:21598	ENSG00000231690	GGGAGGCCGAGGUGG
hsa_m5C_3567	chr6	169802633	169802634	+	ENST00000420557	C2343	m5C	C8	5'-GGGAGGCCGAGGUGG-3'	((....))....... ( -1.60)	loop	lncRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr6:169802627-169802641	LINC00574	HGNC:21598	ENSG00000231690	GGGAGGCCGAGGUGG
hsa_m5C_3568	chr15	43573810	43573811	-	ENST00000420765	C2479	m5C	C26	5'-GGCACUGGCUGAUGUGGUCAUUCCCCAG^G-3'	....((((..((((....))))..)))). ( -7.70)	loop	mRNA	HeLa	BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	31061524	29	chr15:43573484-43573484;43573809-43573836	PPIP5K1	HGNC:29023	ENSG00000168781	GGCACUGGCUGAUGUGGUCAUUCCCCAGG
hsa_m5C_3569	chr22	50521778	50521779	+	ENST00000420993	C1153	m5C	C11	5'-GGAGGAGGCUCUGG-3'	((((....)))).. ( -3.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	14	chr22:50521769-50521782	NCAPH2	HGNC:25071	ENSG00000025770	GGAGGAGGCUCUGG
hsa_m5C_3570	chr4	4418101	4418102	+	ENST00000421177	C3216	m5C	C30	5'-GGGAGGGGCACCACCCAUCUGGGUGGAGACAGCUGGG-3'	(((.((....)).)))..((((.((....)).)))). (-13.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	37	chr4:4418073-4418109	NSG1	HGNC:18790	ENSG00000168824	GGGAGGGGCACCACCCAUCUGGGUGGAGACAGCUGGG
hsa_m5C_3571	chr9	34665628	34665629	-	ENST00000421828	C417	m5C	C5	5'-GGCGCUGGAGGCGGAGGAGG-3'	..((((...))))....... ( -3.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	20	chr9:34665614-34665633	NA	NA	ENSG00000187186	GGCGCUGGAGGCGGAGGAGG
hsa_m5C_3572	chr19	51098872	51098873	-	ENST00000421832	C859	m5C	C11	5'-GGAGGCGGCGCGG-3'	NA	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	13	chr19:51098871-51098883	CTU1	HGNC:29590	ENSG00000142544	GGAGGCGGCGCGG
hsa_m5C_3573	chr13	50909814	50909815	+	ENST00000422660	C69	m5C	C19	5'-GGAGCCGCGAGGGAGAGGCCGCGG-3'	....(((((..........))))) ( -6.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	24	chr13:50909797-50909820	RNASEH2B	HGNC:25671	ENSG00000136104	GGAGCCGCGAGGGAGAGGCCGCGG
hsa_m5C_3574	chr13	50910019	50910020	+	ENST00000422660	C274	m5C	C8	5'-GGCGGGGCUGG-3'	(((...))).. ( -0.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	11	chr13:50910013-50910023	RNASEH2B	HGNC:25671	ENSG00000136104	GGCGGGGCUGG
hsa_m5C_3575	chr19	43592140	43592141	-	ENST00000422989	C1912	m5C	C5	5'-GGUGCAGCGGCGACAGGUGGCCUGG-3'	....((((.((.....)).)).)). ( -5.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr19:43592121-43592145	IRGQ	HGNC:24868	ENSG00000167378	GGUGCAGCGGCGACAGGUGGCCUGG
hsa_m5C_3576	chr19	43592137	43592138	-	ENST00000422989	C1915	m5C	C8	5'-GGUGCAGCGGCGACAGGUGGCCUGG-3'	....((((.((.....)).)).)). ( -5.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr19:43592121-43592145	IRGQ	HGNC:24868	ENSG00000167378	GGUGCAGCGGCGACAGGUGGCCUGG
hsa_m5C_3577	chr19	43592134	43592135	-	ENST00000422989	C1918	m5C	C11	5'-GGUGCAGCGGCGACAGGUGGCCUGG-3'	....((((.((.....)).)).)). ( -5.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr19:43592121-43592145	IRGQ	HGNC:24868	ENSG00000167378	GGUGCAGCGGCGACAGGUGGCCUGG
hsa_m5C_3578	chr19	43592131	43592132	-	ENST00000422989	C1921	m5C	C14	5'-GGUGCAGCGGCGACAGGUGGCCUGG-3'	....((((.((.....)).)).)). ( -5.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr19:43592121-43592145	IRGQ	HGNC:24868	ENSG00000167378	GGUGCAGCGGCGACAGGUGGCCUGG
hsa_m5C_3579	chr19	43592124	43592125	-	ENST00000422989	C1928	m5C	C21	5'-GGUGCAGCGGCGACAGGUGGCCUGG-3'	....((((.((.....)).)).)). ( -5.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr19:43592121-43592145	IRGQ	HGNC:24868	ENSG00000167378	GGUGCAGCGGCGACAGGUGGCCUGG
hsa_m5C_3580	chr19	43592123	43592124	-	ENST00000422989	C1929	m5C	C22	5'-GGUGCAGCGGCGACAGGUGGCCUGG-3'	....((((.((.....)).)).)). ( -5.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr19:43592121-43592145	IRGQ	HGNC:24868	ENSG00000167378	GGUGCAGCGGCGACAGGUGGCCUGG
hsa_m5C_3581	chr14	104176588	104176589	+	ENST00000423312	C3937	m5C	C6	5'-GGCUCCCCCCGGCUGCCUGAGGCCCAGG-3'	......((..((((......))))..)) ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr14:104176584-104176611	KIF26A	HGNC:20226	ENSG00000066735	GGCUCCCCCCGGCUGCCUGAGGCCCAGG
hsa_m5C_3582	chr14	104176590	104176591	+	ENST00000423312	C3939	m5C	C8	5'-GGCUCCCCCCGGCUGCCUGAGGCCCAGG-3'	......((..((((......))))..)) ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr14:104176584-104176611	KIF26A	HGNC:20226	ENSG00000066735	GGCUCCCCCCGGCUGCCUGAGGCCCAGG
hsa_m5C_3583	chr14	104176598	104176599	+	ENST00000423312	C3947	m5C	C16	5'-GGCUCCCCCCGGCUGCCUGAGGCCCAGG-3'	......((..((((......))))..)) ( -6.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr14:104176584-104176611	KIF26A	HGNC:20226	ENSG00000066735	GGCUCCCCCCGGCUGCCUGAGGCCCAGG
hsa_m5C_3584	chr14	104176607	104176608	+	ENST00000423312	C3956	m5C	C25	5'-GGCUCCCCCCGGCUGCCUGAGGCCCAGG-3'	......((..((((......))))..)) ( -6.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr14:104176584-104176611	KIF26A	HGNC:20226	ENSG00000066735	GGCUCCCCCCGGCUGCCUGAGGCCCAGG
hsa_m5C_3585	chr14	104175746	104175747	+	ENST00000423312	C3095	m5C	C14	5'-GGGCAUGAGUGGGCAGGUGGCUGGG-3'	((.(((..........))).))... ( -2.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	25	chr14:104175734-104175758	KIF26A	HGNC:20226	ENSG00000066735	GGGCAUGAGUGGGCAGGUGGCUGGG
hsa_m5C_3586	chr14	104175753	104175754	+	ENST00000423312	C3102	m5C	C21	5'-GGGCAUGAGUGGGCAGGUGGCUGGG-3'	((.(((..........))).))... ( -2.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	25	chr14:104175734-104175758	KIF26A	HGNC:20226	ENSG00000066735	GGGCAUGAGUGGGCAGGUGGCUGGG
hsa_m5C_3587	chr14	104176070	104176071	+	ENST00000423312	C3419	m5C	C8	5'-GGGGGGGCCCCUGGAGGGGGCAGCCUGGG-3'	.(((..((((((...))))))..)))... (-15.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	29	chr14:104176064-104176092	KIF26A	HGNC:20226	ENSG00000066735	GGGGGGGCCCCUGGAGGGGGCAGCCUGGG
hsa_m5C_3588	chr14	104176072	104176073	+	ENST00000423312	C3421	m5C	C10	5'-GGGGGGGCCCCUGGAGGGGGCAGCCUGGG-3'	.(((..((((((...))))))..)))... (-15.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	29	chr14:104176064-104176092	KIF26A	HGNC:20226	ENSG00000066735	GGGGGGGCCCCUGGAGGGGGCAGCCUGGG
hsa_m5C_3589	chr14	104171859	104171860	+	ENST00000423312	C1387	m5C	C21	5'-GGUCCCCCAGGCAGCGCAGGCCCCCGG-3'	......((.((..((....))..)))) ( -4.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr14:104171840-104171866	KIF26A	HGNC:20226	ENSG00000066735	GGUCCCCCAGGCAGCGCAGGCCCCCGG
hsa_m5C_3590	chr14	104171860	104171861	+	ENST00000423312	C1388	m5C	C22	5'-GGUCCCCCAGGCAGCGCAGGCCCCCGG-3'	......((.((..((....))..)))) ( -4.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr14:104171840-104171866	KIF26A	HGNC:20226	ENSG00000066735	GGUCCCCCAGGCAGCGCAGGCCCCCGG
hsa_m5C_3591	chr14	104171862	104171863	+	ENST00000423312	C1390	m5C	C24	5'-GGUCCCCCAGGCAGCGCAGGCCCCCGG-3'	......((.((..((....))..)))) ( -4.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr14:104171840-104171866	KIF26A	HGNC:20226	ENSG00000066735	GGUCCCCCAGGCAGCGCAGGCCCCCGG
hsa_m5C_3592	chr1	175158456	175158457	-	ENST00000423313	C3077	m5C	C7	5'-GGAGGGCGGAUCACCGGGAUCCGGG-3'	......((((((.....)))))).. ( -8.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr1:175158439-175158463	KIAA0040	HGNC:28950	ENSG00000235750	GGAGGGCGGAUCACCGGGAUCCGGG
hsa_m5C_3593	chr4	2064494	2064495	+	ENST00000423729	C1462	m5C	C5	5'-GGGGCCAGGCUCCGG-3'	(((((...))))).. ( -6.60)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	15	chr4:2064491-2064505	NAT8L	HGNC:26742	ENSG00000185818	GGGGCCAGGCUCCGG
hsa_m5C_3594	chr4	2064495	2064496	+	ENST00000423729	C1463	m5C	C6	5'-GGGGCCAGGCUCCGG-3'	(((((...))))).. ( -6.60)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	15	chr4:2064491-2064505	NAT8L	HGNC:26742	ENSG00000185818	GGGGCCAGGCUCCGG
hsa_m5C_3595	chr4	2059710	2059711	+	ENST00000423729	C385	m5C	C5	5'-GGGGCGGGGGGCGCGGGGCCGCCGGGGG-3'	......((.(((.....))).))..... (-10.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	28	chr4:2059707-2059734	NAT8L	HGNC:26742	ENSG00000185818	GGGGCGGGGGGCGCGGGGCCGCCGGGGG
hsa_m5C_3596	chr4	2059717	2059718	+	ENST00000423729	C392	m5C	C12	5'-GGGGCGGGGGGCGCGGGGCCGCCGGGGG-3'	......((.(((.....))).))..... (-10.50)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	28	chr4:2059707-2059734	NAT8L	HGNC:26742	ENSG00000185818	GGGGCGGGGGGCGCGGGGCCGCCGGGGG
hsa_m5C_3597	chr4	2059719	2059720	+	ENST00000423729	C394	m5C	C14	5'-GGGGCGGGGGGCGCGGGGCCGCCGGGGG-3'	......((.(((.....))).))..... (-10.50)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database	28418038	28	chr4:2059707-2059734	NAT8L	HGNC:26742	ENSG00000185818	GGGGCGGGGGGCGCGGGGCCGCCGGGGG
hsa_m5C_3598	chr12	49742269	49742270	+	ENST00000423828	C462	m5C	C11	5'-GGAUUGGUUACCUUUGGGCAG^AGUGG-3'	..........((....))........ ( -0.70)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	26	chr12:49742260-49742280;49752464-49752468	TMBIM6	HGNC:11723	ENSG00000139644	GGAUUGGUUACCUUUGGGCAGAGUGG
hsa_m5C_3599	chr8	60844870	60844871	+	ENST00000423902	C5375	m5C	C6	5'-GGGGACGGUGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	11	chr8:60844866-60844876	CHD7	HGNC:20626	ENSG00000171316	GGGGACGGUGG
hsa_m5C_3600	chr2	119681863	119681864	+	ENST00000424086	C1484	m5C	C18	5'-GGAGGGCCCUGUUGGAGCCUUUGG-3'	.((((((((....)).)))))).. (-10.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr2:119681847-119681870	TMEM177	HGNC:28143	ENSG00000144120	GGAGGGCCCUGUUGGAGCCUUUGG
hsa_m5C_3601	chr3	50503407	50503408	-	ENST00000424201	C227	m5C	C14	5'-GGCGGUGCCGGCUCGG-3'	(((...)))....... ( -3.00)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr3:50503406-50503421	CACNA2D2	HGNC:1400	ENSG00000007402	GGCGGUGCCGGCUCGG
hsa_m5C_3602	chr6	41684964	41684965	-	ENST00000424495	C2618	m5C	C3	5'-GGCCCAGGGGAGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	13	chr6:41684955-41684967	TFEB	HGNC:11753	ENSG00000112561	GGCCCAGGGGAGG
hsa_m5C_3603	chr6	41684338	41684339	-	ENST00000424495	C3244	m5C	C4	5'-GGGCAGGGAGGGGCAGGG-3'	..((........)).... ( -0.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	18	chr6:41684325-41684342	TFEB	HGNC:11753	ENSG00000112561	GGGCAGGGAGGGGCAGGG
hsa_m5C_3604	chr17	1517016	1517017	+	ENST00000425081	C141	m5C	C10	5'-GGGGUCAAACGAGGGUCGGGGGUGGGG-3'	.((.((......)).)).......... ( -1.40)	loop	lncRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31061524	27	chr17:1517008-1517034	PITPNA-AS1	HGNC:44116	ENSG00000236618	GGGGUCAAACGAGGGUCGGGGGUGGGG
hsa_m5C_3605	chr19	44663370	44663371	+	ENST00000425690	C3001	m5C	C17	5'-GGACAGAGGAUUUGCUCUGGACAGAGAUGG-3'	...(((((......)))))........... ( -7.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr19:44663355-44663384	PVR	HGNC:9705	ENSG00000073008	GGACAGAGGAUUUGCUCUGGACAGAGAUGG
hsa_m5C_3606	chr22	20241815	20241816	-	ENST00000425986	C1574	m5C	C9	5'-GGGGGUGGCGG-3'	NA	loop	mRNA	spleen	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31061524	11	chr22:20241814-20241824	RTN4R	HGNC:18601	ENSG00000040608	GGGGGUGGCGG
hsa_m5C_3607	chr18	79377724	79377725	+	ENST00000426216	C3803	m5C	C16	5'-GGCAAGCCCAGGGCACAGAGGCCGGG-3'	......(((..(((......)))))) ( -6.70)	loop	mRNA	HeLa	m5C-RIP-seq:(Medium)	pqsfinder&qgrs:(Low)	RMBase database	NA	26	chr18:79377710-79377735	ATP9B	HGNC:13541	ENSG00000166377	GGCAAGCCCAGGGCACAGAGGCCGGG
hsa_m5C_3608	chr22	45133241	45133242	-	ENST00000426282	C1854	m5C	C3	5'-GGCAUGGUGGUGG-3'	..(((....))). ( -0.40)	loop	lncRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database	28418038	13	chr22:45133232-45133244	NUP50-DT	HGNC:50502	ENSG00000226328	GGCAUGGUGGUGG
hsa_m5C_3609	chr22	45133376	45133377	-	ENST00000426282	C1719	m5C	C8	5'-GGCCGGGCAUGGUGG-3'	.((((....)))).. ( -2.90)	loop	lncRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	15	chr22:45133370-45133384	NUP50-DT	HGNC:50502	ENSG00000226328	GGCCGGGCAUGGUGG
hsa_m5C_3610	chr22	45133202	45133203	-	ENST00000426282	C1893	m5C	C7	5'-GGGAGGCUGAGGCAGGGAGAAUCACUUGAACCUGGGGGG-3'	......((.(((((((........))))..))).))... ( -8.60)	loop	lncRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	39	chr22:45133171-45133209	NUP50-DT	HGNC:50502	ENSG00000226328	GGGAGGCUGAGGCAGGGAGAAUCACUUGAACCUGGGGGG
hsa_m5C_3611	chr22	45133196	45133197	-	ENST00000426282	C1899	m5C	C13	5'-GGGAGGCUGAGGCAGGGAGAAUCACUUGAACCUGGGGGG-3'	......((.(((((((........))))..))).))... ( -8.60)	loop	lncRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	39	chr22:45133171-45133209	NUP50-DT	HGNC:50502	ENSG00000226328	GGGAGGCUGAGGCAGGGAGAAUCACUUGAACCUGGGGGG
hsa_m5C_3612	chr9	133348722	133348723	+	ENST00000426651	C472	m5C	C15	5'-GGCCACUCGGGGUUCCCGG-3'	.......((((...)))). ( -5.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr9:133348709-133348727	RPL7A	HGNC:10364	ENSG00000148303	GGCCACUCGGGGUUCCCGG
hsa_m5C_3613	chr9	133348724	133348725	+	ENST00000426651	C474	m5C	C17	5'-GGCCACUCGGGGUUCCCGG-3'	.......((((...)))). ( -5.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr9:133348709-133348727	RPL7A	HGNC:10364	ENSG00000148303	GGCCACUCGGGGUUCCCGG
hsa_m5C_3614	chr17	44316697	44316698	+	ENST00000426726	C1403	m5C	C14	5'-GGGAGAGGGCACGCGGGACGAGGAGCCCUGGG-3'	.....(((((...((...))....)))))... ( -7.90)	loop	mRNA	frontal_cortex,Testis;frontal_cortex	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	32	chr17:44316685-44316716	RUNDC3A	HGNC:16984	ENSG00000108309	GGGAGAGGGCACGCGGGACGAGGAGCCCUGGG
hsa_m5C_3615	chr1	113976024	113976025	+	ENST00000426820	C6357	m5C	C8	5'-GGAGGUGCAGGAUGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	15	chr1:113976018-113976032	HIPK1	HGNC:19006	ENSG00000163349	GGAGGUGCAGGAUGG
hsa_m5C_3616	chr1	113940974	113940975	+	ENST00000426820	C803	m5C	C4	5'-GGCCGGGGGACAUUUGG-3'	..(((((.....))))) ( -1.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr1:113940972-113940988	HIPK1	HGNC:19006	ENSG00000163349	GGCCGGGGGACAUUUGG
hsa_m5C_3617	chr1	101025418	101025419	-	ENST00000427040	C374	m5C	C10	5'-GGGUUGGGCCUGGGAGAUGCCAAGG-3'	((......))(((......)))... ( -4.00)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	25	chr1:101025404-101025428	DPH5	HGNC:24270	ENSG00000117543	GGGUUGGGCCUGGGAGAUGCCAAGG
hsa_m5C_3618	chr19	48479262	48479263	+	ENST00000427476	C1556	m5C	C8	5'-GGGUGGCCGGACCCCUGGGCCUUGGG-3'	....((((.........))))..... ( -7.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr19:48479256-48479281	CYTH2	HGNC:9502	ENSG00000105443	GGGUGGCCGGACCCCUGGGCCUUGGG
hsa_m5C_3619	chr5	177311861	177311862	-	ENST00000427908	C37	m5C	C10	5'-GGCCGGCACCCUAGGCCGG-3'	..(((((.......))))) ( -8.00)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr5:177311853-177311871	MXD3	HGNC:14008	ENSG00000213347	GGCCGGCACCCUAGGCCGG
hsa_m5C_3620	chr6	30345166	30345167	+	ENST00000428040	C9	m5C	C3	5'-GGCGGUGAUGGCGGG-3'	.((.......))... ( -1.40)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr6:30345165-30345179	RPP21	HGNC:21300	ENSG00000241370	GGCGGUGAUGGCGGG
hsa_m5C_3621	chr12	111841698	111841699	-	ENST00000428207	C1204	m5C	C7	5'-GGUAGCCGUUUGGCGUCGUGAGGUAUGG-3'	....(((....))).............. ( -4.00)	loop	lncRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr12:111841678-111841705	MAPKAPK5-AS1	HGNC:24091	ENSG00000234608	GGUAGCCGUUUGGCGUCGUGAGGUAUGG
hsa_m5C_3622	chr20	3868398	3868399	+	ENST00000428216	C4012	m5C	C6	5'-GGAGGCCAAGGUGG-3'	NA	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	14	chr20:3868394-3868407	MAVS	HGNC:29233	ENSG00000088888	GGAGGCCAAGGUGG
hsa_m5C_3623	chr20	3868399	3868400	+	ENST00000428216	C4013	m5C	C7	5'-GGAGGCCAAGGUGG-3'	NA	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	14	chr20:3868394-3868407	MAVS	HGNC:29233	ENSG00000088888	GGAGGCCAAGGUGG
hsa_m5C_3624	chr20	3866091	3866092	+	ENST00000428216	C1705	m5C	C27	5'-GGCUCUGUGGCUCCAGGUGGCUGUGACAGG-3'	....((((.((.((....))..)).)))). ( -8.80)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	m5C-RIP-seq:(Medium)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	31061524	30	chr20:3866066-3866095	MAVS	HGNC:29233	ENSG00000088888	GGCUCUGUGGCUCCAGGUGGCUGUGACAGG
hsa_m5C_3625	chr20	3866765	3866766	+	ENST00000428216	C2379	m5C	C25	5'-GGUUCCUGUGGACCUCAGGGAAGCCAGGG-3'	((((((((.......)))))..))).... ( -8.30)	loop	mRNA	T24;293T;HeLa	UBS-seq:(High);RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;30872485;38168991	29	chr20:3866742-3866770	MAVS	HGNC:29233	ENSG00000088888	GGUUCCUGUGGACCUCAGGGAAGCCAGGG
hsa_m5C_3626	chr19	10114531	10114532	+	ENST00000428358	C2413	m5C	C27	5'-GGCCCUACGUGGGCUACCAGGUGAUGCGGG-3'	..((((((.(((....))).)))....))) ( -9.60)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa,siControl;HeLa	m5C-RIP-seq:(Medium),RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038;31061524	30	chr19:10114506-10114535	PPAN-P2RY11	HGNC:33526	ENSG00000243207	GGCCCUACGUGGGCUACCAGGUGAUGCGGG
hsa_m5C_3627	chr1	51784021	51784022	+	ENST00000428468	C1640	m5C	C31	5'-GGGAUGUCAAUUGGGGUGCACAACAUAGGGCAGG^G-3'	....((((...((..........))...))))... ( -3.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	35	chr1:51783992-51784025;51784264-51784264	OSBPL9	HGNC:16386	ENSG00000117859	GGGAUGUCAAUUGGGGUGCACAACAUAGGGCAGGG
hsa_m5C_3628	chr7	103561934	103561935	-	ENST00000428762	C5531	m5C	C11	5'-GGACCCGGUUCAGAUGGAUUCAGG-3'	(((.(((.......))).)))... ( -3.00)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr7:103561922-103561945	RELN	HGNC:9957	ENSG00000189056	GGACCCGGUUCAGAUGGAUUCAGG
hsa_m5C_3629	chrX	21856793	21856794	+	ENST00000429584	C808	m5C	C8	5'-GGAGGACCAGUUGGCCCUCCCGG-3'	(((((.((....)).)))))... (-10.60)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chrX:21856787-21856809	YY2	HGNC:31684	ENSG00000230797	GGAGGACCAGUUGGCCCUCCCGG
hsa_m5C_3630	chrX	73851577	73851578	-	ENST00000429829	C1146	m5C	C17	5'-GGAAGGUUAGGAAAGACUAAGG-3'	......((((......)))).. ( -1.70)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chrX:73851573-73851594	XIST	HGNC:12810	ENSG00000229807	GGAAGGUUAGGAAAGACUAAGG
hsa_m5C_3631	chrX	73851156	73851157	-	ENST00000429829	C1567	m5C	C21	5'-GGGAGAAAAGGUGGGAUGGACAG-3'	NA	bulge	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	23	chrX:73851155-73851177	XIST	HGNC:12810	ENSG00000229807	GGGAGAAAAGGUGGGAUGGACAG
hsa_m5C_3632	chrX	73831193	73831194	-	ENST00000429829	C11624	m5C	C14	5'-GGUGGAGAUGGGGCAUGAGGAUCCUCCAGG-3'	((.(((...............))).))... ( -5.10)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chrX:73831178-73831207	XIST	HGNC:12810	ENSG00000229807	GGUGGAGAUGGGGCAUGAGGAUCCUCCAGG
hsa_m5C_3633	chrX	73831183	73831184	-	ENST00000429829	C11634	m5C	C24	5'-GGUGGAGAUGGGGCAUGAGGAUCCUCCAGG-3'	((.(((...............))).))... ( -5.10)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chrX:73831178-73831207	XIST	HGNC:12810	ENSG00000229807	GGUGGAGAUGGGGCAUGAGGAUCCUCCAGG
hsa_m5C_3634	chrX	73831180	73831181	-	ENST00000429829	C11637	m5C	C27	5'-GGUGGAGAUGGGGCAUGAGGAUCCUCCAGG-3'	((.(((...............))).))... ( -5.10)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chrX:73831178-73831207	XIST	HGNC:12810	ENSG00000229807	GGUGGAGAUGGGGCAUGAGGAUCCUCCAGG
hsa_m5C_3635	chrX	73842042	73842043	-	ENST00000429829	C10681	m5C	C11	5'-GGUGGUGGGUCUGUGG-3'	NA	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	16	chrX:73842038-73842053	XIST	HGNC:12810	ENSG00000229807	GGUGGUGGGUCUGUGG
hsa_m5C_3636	chr14	20505625	20505626	+	ENST00000430083	C90	m5C	C5	5'-GGUGCCCAGGCUGGAGUGCAGUGG-3'	.(((((((...))).))))..... ( -5.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr14:20505622-20505645	RNASE10	HGNC:19275	ENSG00000182545	GGUGCCCAGGCUGGAGUGCAGUGG
hsa_m5C_3637	chr2	70302046	70302047	-	ENST00000430566	C21	m5C	C6	5'-GGGCGCCGGCGCGGAGCGCCGCGGG-3'	...(((.(((((...)))))))).. (-12.90)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr2:70302028-70302052	FAM136A	HGNC:25911	ENSG00000035141	GGGCGCCGGCGCGGAGCGCCGCGGG
hsa_m5C_3638	chr2	70302045	70302046	-	ENST00000430566	C22	m5C	C7	5'-GGGCGCCGGCGCGGAGCGCCGCGGG-3'	...(((.(((((...)))))))).. (-12.90)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr2:70302028-70302052	FAM136A	HGNC:25911	ENSG00000035141	GGGCGCCGGCGCGGAGCGCCGCGGG
hsa_m5C_3639	chr1	16563478	16563479	-	ENST00000430580	C4772	m5C	C9	5'-GGAGGGAUCCUUGGCUGAGG-3'	(((....))).......... ( -2.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr1:16563468-16563487	NBPF1	HGNC:26088	ENSG00000219481	GGAGGGAUCCUUGGCUGAGG
hsa_m5C_3640	chr1	16563477	16563478	-	ENST00000430580	C4773	m5C	C10	5'-GGAGGGAUCCUUGGCUGAGG-3'	(((....))).......... ( -2.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr1:16563468-16563487	NBPF1	HGNC:26088	ENSG00000219481	GGAGGGAUCCUUGGCUGAGG
hsa_m5C_3641	chr1	16563472	16563473	-	ENST00000430580	C4778	m5C	C15	5'-GGAGGGAUCCUUGGCUGAGG-3'	(((....))).......... ( -2.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	20	chr1:16563468-16563487	NBPF1	HGNC:26088	ENSG00000219481	GGAGGGAUCCUUGGCUGAGG
hsa_m5C_3642	chr7	5374459	5374460	-	ENST00000430969	C3461	m5C	C2	5'-GCACCGGGCGGAGAUGG-3'	((.....))........ ( -0.80)	bulge	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr7:5374445-5374461	TNRC18	HGNC:11962	ENSG00000182095	GCACCGGGCGGAGAUGG
hsa_m5C_3643	chr7	5374457	5374458	-	ENST00000430969	C3463	m5C	C4	5'-GCACCGGGCGGAGAUGG-3'	((.....))........ ( -0.80)	bulge	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr7:5374445-5374461	TNRC18	HGNC:11962	ENSG00000182095	GCACCGGGCGGAGAUGG
hsa_m5C_3644	chr7	5374456	5374457	-	ENST00000430969	C3464	m5C	C5	5'-GCACCGGGCGGAGAUGG-3'	((.....))........ ( -0.80)	bulge	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr7:5374445-5374461	TNRC18	HGNC:11962	ENSG00000182095	GCACCGGGCGGAGAUGG
hsa_m5C_3645	chr7	5374452	5374453	-	ENST00000430969	C3468	m5C	C9	5'-GCACCGGGCGGAGAUGG-3'	((.....))........ ( -0.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr7:5374445-5374461	TNRC18	HGNC:11962	ENSG00000182095	GCACCGGGCGGAGAUGG
hsa_m5C_3646	chr7	5332840	5332841	-	ENST00000430969	C6565	m5C	C3	5'-GGCCCCAAGGAGCCUGGCUUCGAGG-3'	....((..(((((...)))))..)) ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr7:5332819-5332843	TNRC18	HGNC:11962	ENSG00000182095	GGCCCCAAGGAGCCUGGCUUCGAGG
hsa_m5C_3647	chr7	5332838	5332839	-	ENST00000430969	C6567	m5C	C5	5'-GGCCCCAAGGAGCCUGGCUUCGAGG-3'	....((..(((((...)))))..)) ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr7:5332819-5332843	TNRC18	HGNC:11962	ENSG00000182095	GGCCCCAAGGAGCCUGGCUUCGAGG
hsa_m5C_3648	chr7	5332837	5332838	-	ENST00000430969	C6568	m5C	C6	5'-GGCCCCAAGGAGCCUGGCUUCGAGG-3'	....((..(((((...)))))..)) ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr7:5332819-5332843	TNRC18	HGNC:11962	ENSG00000182095	GGCCCCAAGGAGCCUGGCUUCGAGG
hsa_m5C_3649	chr7	5351945	5351946	-	ENST00000430969	C5980	m5C	C5	5'-GGGGCCUGGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	12	chr7:5351939-5351950	TNRC18	HGNC:11962	ENSG00000182095	GGGGCCUGGCGG
hsa_m5C_3650	chr7	5351944	5351945	-	ENST00000430969	C5981	m5C	C6	5'-GGGGCCUGGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	12	chr7:5351939-5351950	TNRC18	HGNC:11962	ENSG00000182095	GGGGCCUGGCGG
hsa_m5C_3651	chr16	371567	371568	-	ENST00000431232	C2892	m5C	C6	5'-GGGGCCGGGAGCUGUGG-3'	..(((.....))).... ( -1.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr16:371557-371573	PGAP6	HGNC:17205	ENSG00000129925	GGGGCCGGGAGCUGUGG
hsa_m5C_3652	chr17	81239442	81239443	+	ENST00000431388	C126	m5C	C4	5'-GGGCCGAG^GCCGCGGCGUACGG-3'	..((((......))))...... ( -6.60)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	22	chr17:81239440-81239447;81239568-81239581	NDUFAF8	HGNC:33551	ENSG00000224877	GGGCCGAGGCCGCGGCGUACGG
hsa_m5C_3653	chr17	81239443	81239444	+	ENST00000431388	C127	m5C	C5	5'-GGGCCGAG^GCCGCGGCGUACGG-3'	..((((......))))...... ( -6.60)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	22	chr17:81239440-81239447;81239568-81239581	NDUFAF8	HGNC:33551	ENSG00000224877	GGGCCGAGGCCGCGGCGUACGG
hsa_m5C_3654	chr19	54174337	54174338	-	ENST00000431666	C1546	m5C	C7	5'-GGCUGCCGAGGGCCGGCUGG-3'	(((((((...)).))))).. ( -6.70)	loop	mRNA	HeLa	UBS-seq:(High);RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	30872485;38168991	20	chr19:54174325-54174344	MBOAT7	HGNC:15505	ENSG00000125505	GGCUGCCGAGGGCCGGCUGG
hsa_m5C_3655	chr19	54174135	54174136	-	ENST00000431666	C1748	m5C	C5	5'-GGGGCUGGGGCUGGCUUUAGG-3'	((((((......))))))... ( -3.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	21	chr19:54174120-54174140	MBOAT7	HGNC:15505	ENSG00000125505	GGGGCUGGGGCUGGCUUUAGG
hsa_m5C_3656	chr19	54174129	54174130	-	ENST00000431666	C1754	m5C	C11	5'-GGGGCUGGGGCUGGCUUUAGG-3'	((((((......))))))... ( -3.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	21	chr19:54174120-54174140	MBOAT7	HGNC:15505	ENSG00000125505	GGGGCUGGGGCUGGCUUUAGG
hsa_m5C_3657	chr6	33315128	33315129	-	ENST00000431845	C1949	m5C	C9	5'-GGAGUGGGCGGGGGCAGCGG-3'	...((..((....)).)).. ( -2.20)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	20	chr6:33315118-33315137	ZBTB22	HGNC:13085	ENSG00000236104	GGAGUGGGCGGGGGCAGCGG
hsa_m5C_3658	chr6	33315122	33315123	-	ENST00000431845	C1955	m5C	C15	5'-GGAGUGGGCGGGGGCAGCGG-3'	...((..((....)).)).. ( -2.20)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	20	chr6:33315118-33315137	ZBTB22	HGNC:13085	ENSG00000236104	GGAGUGGGCGGGGGCAGCGG
hsa_m5C_3659	chr2	181891970	181891971	+	ENST00000431877	C242	m5C	C9	5'-GGGGCCCCCUGCCCGGCCGGGCGCUGACAGCAAGGGCGGGG-3'	(((...)))..((((.((..((.......))..)).)))). (-18.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	41	chr2:181891963-181892003	ITPRID2	HGNC:11319	ENSG00000138434	GGGGCCCCCUGCCCGGCCGGGCGCUGACAGCAAGGGCGGGG
hsa_m5C_3660	chr2	181891989	181891990	+	ENST00000431877	C261	m5C	C28	5'-GGGGCCCCCUGCCCGGCCGGGCGCUGACAGCAAGGGCGGGG-3'	(((...)))..((((.((..((.......))..)).)))). (-18.80)	bulge	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	41	chr2:181891963-181892003	ITPRID2	HGNC:11319	ENSG00000138434	GGGGCCCCCUGCCCGGCCGGGCGCUGACAGCAAGGGCGGGG
hsa_m5C_3661	chr1	151994583	151994584	+	ENST00000432386	C54	m5C	C6	5'-GGAGGCCGAGGCGG-3'	....((....)).. ( -1.50)	loop	lncRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr1:151994579-151994592	NA	NA	ENSG00000229021	GGAGGCCGAGGCGG
hsa_m5C_3662	chr1	151994584	151994585	+	ENST00000432386	C55	m5C	C7	5'-GGAGGCCGAGGCGG-3'	....((....)).. ( -1.50)	loop	lncRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr1:151994579-151994592	NA	NA	ENSG00000229021	GGAGGCCGAGGCGG
hsa_m5C_3663	chr1	38991486	38991487	+	ENST00000432648	C212	m5C	C11	5'-GGCCCCACUCCGGGCCUCAGGCCCCCGG-3'	(((((......)))))............ (-10.20)	loop	mRNA	Testis,HeLa;293T;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	38168991;28418038;22344696	28	chr1:38991477-38991504	AKIRIN1	HGNC:25744	ENSG00000174574	GGCCCCACUCCGGGCCUCAGGCCCCCGG
hsa_m5C_3664	chr2	70279843	70279844	+	ENST00000433351	C3998	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr2:70279839-70279853	PCYOX1	HGNC:20588	ENSG00000116005	GGAGGCUGAGGCAGG
hsa_m5C_3665	chr2	70214451	70214452	-	ENST00000433529	C1129	m5C	C6	5'-GGGGCCAGUGGUAUGG-3'	....(((......))) ( -1.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr2:70214442-70214457	TIA1	HGNC:11802	ENSG00000116001	GGGGCCAGUGGUAUGG
hsa_m5C_3666	chr11	63765205	63765206	-	ENST00000433688	C839	m5C	C13	5'-GGCGAGGGGGCCCAGUGGCACCCCGG-3'	.....(((((((....))).)))).. (-12.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr11:63765193-63765218	ZFTA	HGNC:28449	ENSG00000188070	GGCGAGGGGGCCCAGUGGCACCCCGG
hsa_m5C_3667	chr11	63766267	63766268	-	ENST00000433688	C329	m5C	C38	5'-G^GGCAAGAUCUUCAGCUGGAAGGGGGUGCCUUGGGGUCCUGGGGG-3'	(((((...(((((.....)))))...))))).............. (-11.50)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	45	chr11:63766261-63766304;63768484-63768484	ZFTA	HGNC:28449	ENSG00000188070	GGGCAAGAUCUUCAGCUGGAAGGGGGUGCCUUGGGGUCCUGGGGG
hsa_m5C_3668	chr3	50577137	50577138	+	ENST00000434410	C797	m5C	C10	5'-GGAGGUGGGCUGCGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr3:50577129-50577143	HEMK1	HGNC:24923	ENSG00000114735	GGAGGUGGGCUGCGG
hsa_m5C_3669	chr6	33304500	33304501	-	ENST00000434618	C1043	m5C	C35	5'-GGGCCUGGAGGUGGAGUGGGAACUCCGGGGUGGCCCAGGGGG-3'	(((((......((((((....))))))....)))))...... (-19.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	42	chr6:33304494-33304535	TAPBP	HGNC:11566	ENSG00000231925	GGGCCUGGAGGUGGAGUGGGAACUCCGGGGUGGCCCAGGGGG
hsa_m5C_3670	chr15	84645699	84645700	-	ENST00000434634	C663	m5C	C3	5'-GGCCCUGGGUCUGGUGG-3'	((((...))))...... ( -3.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr15:84645686-84645702	WDR73	HGNC:25928	ENSG00000177082	GGCCCUGGGUCUGGUGG
hsa_m5C_3671	chr15	84645698	84645699	-	ENST00000434634	C664	m5C	C4	5'-GGCCCUGGGUCUGGUGG-3'	((((...))))...... ( -3.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr15:84645686-84645702	WDR73	HGNC:25928	ENSG00000177082	GGCCCUGGGUCUGGUGG
hsa_m5C_3672	chr15	84645697	84645698	-	ENST00000434634	C665	m5C	C5	5'-GGCCCUGGGUCUGGUGG-3'	((((...))))...... ( -3.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr15:84645686-84645702	WDR73	HGNC:25928	ENSG00000177082	GGCCCUGGGUCUGGUGG
hsa_m5C_3673	chr15	84645650	84645651	-	ENST00000434634	C712	m5C	C13	5'-GGGAGCUGGGGCCAGGGCCCUGGG-3'	.....(((((((....))))))). (-10.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr15:84645640-84645663	WDR73	HGNC:25928	ENSG00000177082	GGGAGCUGGGGCCAGGGCCCUGGG
hsa_m5C_3674	chr16	11915585	11915586	-	ENST00000434724	C371	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	11	chr16:11915578-11915588	GSPT1	HGNC:4621	ENSG00000103342	GGCGGCGGCGG
hsa_m5C_3675	chr16	11896700	11896701	-	ENST00000434724	C757	m5C	C11	5'-GGGGGUGGUUCCUUGGGAGAUGG-3'	(((((....)))))......... ( -3.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	23	chr16:11896689-11896711	GSPT1	HGNC:4621	ENSG00000103342	GGGGGUGGUUCCUUGGGAGAUGG
hsa_m5C_3676	chr16	11896699	11896700	-	ENST00000434724	C758	m5C	C12	5'-GGGGGUGGUUCCUUGGGAGAUGG-3'	(((((....)))))......... ( -3.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	23	chr16:11896689-11896711	GSPT1	HGNC:4621	ENSG00000103342	GGGGGUGGUUCCUUGGGAGAUGG
hsa_m5C_3677	chr6	37697758	37697759	-	ENST00000434837	C125	m5C	C4	5'-GGGCGGGGGCGGGGACGACCAACUUGGG-3'	(((..((..((....)).))..)))... ( -5.00)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	28	chr6:37697735-37697762	MDGA1	HGNC:19267	ENSG00000112139	GGGCGGGGGCGGGGACGACCAACUUGGG
hsa_m5C_3678	chr6	37697752	37697753	-	ENST00000434837	C131	m5C	C10	5'-GGGCGGGGGCGGGGACGACCAACUUGGG-3'	(((..((..((....)).))..)))... ( -5.00)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	28	chr6:37697735-37697762	MDGA1	HGNC:19267	ENSG00000112139	GGGCGGGGGCGGGGACGACCAACUUGGG
hsa_m5C_3679	chr11	108473174	108473175	-	ENST00000434945	C3311	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr11:108473166-108473180	POGLUT3	HGNC:28496	ENSG00000178202	GGAGGCUGAGGCAGG
hsa_m5C_3680	chr14	105469930	105469931	+	ENST00000435036	C2164	m5C	C3	5'-GGCGGCGGAUGAACUGG-3'	..(((........))). ( -0.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr14:105469929-105469945	MTA1	HGNC:7410	ENSG00000182979	GGCGGCGGAUGAACUGG
hsa_m5C_3681	chr14	105469941	105469942	+	ENST00000435036	C2175	m5C	C14	5'-GGCGGCGGAUGAACUGG-3'	..(((........))). ( -0.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr14:105469929-105469945	MTA1	HGNC:7410	ENSG00000182979	GGCGGCGGAUGAACUGG
hsa_m5C_3682	chr8	143577310	143577311	-	ENST00000435154	C551	m5C	C23	5'-GGGCCUGAGGCGGGCUCAGGGCCCCGAUGGG-3'	(((((((((.....)))).)))))....... (-15.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	31	chr8:143577303-143577333	NAPRT	HGNC:30450	ENSG00000147813	GGGCCUGAGGCGGGCUCAGGGCCCCGAUGGG
hsa_m5C_3683	chr8	143577308	143577309	-	ENST00000435154	C553	m5C	C25	5'-GGGCCUGAGGCGGGCUCAGGGCCCCGAUGGG-3'	(((((((((.....)))).)))))....... (-15.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	31	chr8:143577303-143577333	NAPRT	HGNC:30450	ENSG00000147813	GGGCCUGAGGCGGGCUCAGGGCCCCGAUGGG
hsa_m5C_3684	chr2	25743018	25743019	-	ENST00000435504	C3583	m5C	C5	5'-GGUUCAUGCUGGGUUUUGCUGGCAGAAGG-3'	..(((.((((((......))))))))).. ( -8.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr2:25742995-25743023	ASXL2	HGNC:23805	ENSG00000143970	GGUUCAUGCUGGGUUUUGCUGGCAGAAGG
hsa_m5C_3685	chr16	70251663	70251664	-	ENST00000435634	C277	m5C	C6	5'-GGCGGCGGCCCGG-3'	(((....)))... ( -4.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	13	chr16:70251657-70251669	EXOSC6	HGNC:19055	ENSG00000223496	GGCGGCGGCCCGG
hsa_m5C_3686	chr17	16061433	16061434	-	ENST00000436068	C6333	m5C	C20	5'-GGACAAGGAUGCGAGGGAACGUGG-3'	..........(((......))).. ( -0.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr17:16061430-16061453	NCOR1	HGNC:7672	ENSG00000141027	GGACAAGGAUGCGAGGGAACGUGG
hsa_m5C_3687	chr6	109094555	109094556	-	ENST00000436639	C291	m5C	C12	5'-GGGAGGAGCUGCGGAGGG-3'	NA	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	18	chr6:109094550-109094567	SESN1	HGNC:21595	ENSG00000080546	GGGAGGAGCUGCGGAGGG
hsa_m5C_3688	chr4	86594783	86594784	+	ENST00000436978	C470	m5C	C18	5'-GGACCCGGUCUCGGGACCAGCCG^G-3'	((.((((....)))).))...... ( -9.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr4:86594767-86594789;86635252-86635252	PTPN13	HGNC:9646	ENSG00000163629	GGACCCGGUCUCGGGACCAGCCGG
hsa_m5C_3689	chr4	86762856	86762857	+	ENST00000436978	C4164	m5C	C26	5'-GGUCACGUGGUACCCUGAGGCACAUCUCGG-3'	(((........)))(((((......))))) ( -5.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	30	chr4:86762832-86762861	PTPN13	HGNC:9646	ENSG00000163629	GGUCACGUGGUACCCUGAGGCACAUCUCGG
hsa_m5C_3690	chr4	86762858	86762859	+	ENST00000436978	C4166	m5C	C28	5'-GGUCACGUGGUACCCUGAGGCACAUCUCGG-3'	(((........)))(((((......))))) ( -5.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	30	chr4:86762832-86762861	PTPN13	HGNC:9646	ENSG00000163629	GGUCACGUGGUACCCUGAGGCACAUCUCGG
hsa_m5C_3691	chr4	86594691	86594692	+	ENST00000436978	C378	m5C	C13	5'-GGUGGUGGCUCUCGG-3'	NA	loop	mRNA	293T;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	38168991;28418038;22344696	15	chr4:86594680-86594694	PTPN13	HGNC:9646	ENSG00000163629	GGUGGUGGCUCUCGG
hsa_m5C_3692	chr7	73736357	73736358	-	ENST00000437775	C1183	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr7:73736349-73736363	ABHD11	HGNC:16407	ENSG00000106077	GGAGGCUGAGGCAGG
hsa_m5C_3693	chr6	73825876	73825877	+	ENST00000437994	C6962	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr6:73825872-73825886	CD109	HGNC:21685	ENSG00000156535	GGAGGCUGAGGCAGG
hsa_m5C_3694	chr1	16872628	16872629	+	ENST00000438002	C1685	m5C	C3	5'-GGCCCGGGUUCGAUUCCCGGCCAGGG-3'	((((.(((.......))))))).... (-12.50)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr1:16872627-16872652	LINC03126	HGNC:57013	ENSG00000228549	GGCCCGGGUUCGAUUCCCGGCCAGGG
hsa_m5C_3695	chr1	16872629	16872630	+	ENST00000438002	C1686	m5C	C4	5'-GGCCCGGGUUCGAUUCCCGGCCAGGG-3'	((((.(((.......))))))).... (-12.50)	loop	lncRNA	HEK293;cytosolic	Modomics:(Low);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	29106616;30526041	26	chr1:16872627-16872652	LINC03126	HGNC:57013	ENSG00000228549	GGCCCGGGUUCGAUUCCCGGCCAGGG
hsa_m5C_3696	chr1	16872630	16872631	+	ENST00000438002	C1687	m5C	C5	5'-GGCCCGGGUUCGAUUCCCGGCCAGGG-3'	((((.(((.......))))))).... (-12.50)	loop	lncRNA	HEK293;cytosolic	Modomics:(Low);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	29106616;30526041	26	chr1:16872627-16872652	LINC03126	HGNC:57013	ENSG00000228549	GGCCCGGGUUCGAUUCCCGGCCAGGG
hsa_m5C_3697	chr1	16872636	16872637	+	ENST00000438002	C1693	m5C	C11	5'-GGCCCGGGUUCGAUUCCCGGCCAGGG-3'	((((.(((.......))))))).... (-12.50)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr1:16872627-16872652	LINC03126	HGNC:57013	ENSG00000228549	GGCCCGGGUUCGAUUCCCGGCCAGGG
hsa_m5C_3698	chr1	16872641	16872642	+	ENST00000438002	C1698	m5C	C16	5'-GGCCCGGGUUCGAUUCCCGGCCAGGG-3'	((((.(((.......))))))).... (-12.50)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr1:16872627-16872652	LINC03126	HGNC:57013	ENSG00000228549	GGCCCGGGUUCGAUUCCCGGCCAGGG
hsa_m5C_3699	chr1	16872642	16872643	+	ENST00000438002	C1699	m5C	C17	5'-GGCCCGGGUUCGAUUCCCGGCCAGGG-3'	((((.(((.......))))))).... (-12.50)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr1:16872627-16872652	LINC03126	HGNC:57013	ENSG00000228549	GGCCCGGGUUCGAUUCCCGGCCAGGG
hsa_m5C_3700	chr1	16872643	16872644	+	ENST00000438002	C1700	m5C	C18	5'-GGCCCGGGUUCGAUUCCCGGCCAGGG-3'	((((.(((.......))))))).... (-12.50)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr1:16872627-16872652	LINC03126	HGNC:57013	ENSG00000228549	GGCCCGGGUUCGAUUCCCGGCCAGGG
hsa_m5C_3701	chr1	16872647	16872648	+	ENST00000438002	C1704	m5C	C22	5'-GGCCCGGGUUCGAUUCCCGGCCAGGG-3'	((((.(((.......))))))).... (-12.50)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr1:16872627-16872652	LINC03126	HGNC:57013	ENSG00000228549	GGCCCGGGUUCGAUUCCCGGCCAGGG
hsa_m5C_3702	chr10	80169299	80169300	-	ENST00000438331	C713	m5C	C5	5'-GGGGCCCCUGGGGCUGG-3'	..(((((...))))).. ( -7.00)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	17	chr10:80169288-80169304	ANXA11	HGNC:535	ENSG00000122359	GGGGCCCCUGGGGCUGG
hsa_m5C_3703	chr10	80169298	80169299	-	ENST00000438331	C714	m5C	C6	5'-GGGGCCCCUGGGGCUGG-3'	..(((((...))))).. ( -7.00)	loop	mRNA	HeLa,rip antibody: ALYREF;Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	17	chr10:80169288-80169304	ANXA11	HGNC:535	ENSG00000122359	GGGGCCCCUGGGGCUGG
hsa_m5C_3704	chr10	80169297	80169298	-	ENST00000438331	C715	m5C	C7	5'-GGGGCCCCUGGGGCUGG-3'	..(((((...))))).. ( -7.00)	loop	mRNA	HeLa,rip antibody: ALYREF;Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	17	chr10:80169288-80169304	ANXA11	HGNC:535	ENSG00000122359	GGGGCCCCUGGGGCUGG
hsa_m5C_3705	chr10	80169296	80169297	-	ENST00000438331	C716	m5C	C8	5'-GGGGCCCCUGGGGCUGG-3'	..(((((...))))).. ( -7.00)	loop	mRNA	HeLa,rip antibody: ALYREF;Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	17	chr10:80169288-80169304	ANXA11	HGNC:535	ENSG00000122359	GGGGCCCCUGGGGCUGG
hsa_m5C_3706	chr5	32090062	32090063	+	ENST00000438447	C7282	m5C	C6	5'-GGGGGCCCCUCGGGGGAGG-3'	.....((((...))))... ( -5.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr5:32090058-32090076	PDZD2	HGNC:18486	ENSG00000133401	GGGGGCCCCUCGGGGGAGG
hsa_m5C_3707	chr5	32090064	32090065	+	ENST00000438447	C7284	m5C	C8	5'-GGGGGCCCCUCGGGGGAGG-3'	.....((((...))))... ( -5.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr5:32090058-32090076	PDZD2	HGNC:18486	ENSG00000133401	GGGGGCCCCUCGGGGGAGG
hsa_m5C_3708	chr5	32090065	32090066	+	ENST00000438447	C7285	m5C	C9	5'-GGGGGCCCCUCGGGGGAGG-3'	.....((((...))))... ( -5.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr5:32090058-32090076	PDZD2	HGNC:18486	ENSG00000133401	GGGGGCCCCUCGGGGGAGG
hsa_m5C_3709	chr5	32090067	32090068	+	ENST00000438447	C7287	m5C	C11	5'-GGGGGCCCCUCGGGGGAGG-3'	.....((((...))))... ( -5.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr5:32090058-32090076	PDZD2	HGNC:18486	ENSG00000133401	GGGGGCCCCUCGGGGGAGG
hsa_m5C_3710	chr11	65919008	65919009	-	ENST00000438576	C54	m5C	C9	5'-GGCGGCGGCCGUGG-3'	(((....))).... ( -5.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	14	chr11:65919004-65919017	C11orf68	HGNC:28801	ENSG00000175573	GGCGGCGGCCGUGG
hsa_m5C_3711	chr11	65919020	65919021	-	ENST00000438576	C42	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969	11	chr11:65919019-65919029	C11orf68	HGNC:28801	ENSG00000175573	GGCGGCGGCGG
hsa_m5C_3712	chr3	197885508	197885509	+	ENST00000438796	C4467	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr3:197885504-197885518	LRCH3	HGNC:28637	ENSG00000186001	GGAGGCUGAGGCAGG
hsa_m5C_3713	chr3	197885514	197885515	+	ENST00000438796	C4473	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr3:197885504-197885518	LRCH3	HGNC:28637	ENSG00000186001	GGAGGCUGAGGCAGG
hsa_m5C_3714	chr3	197791339	197791340	+	ENST00000438796	C106	m5C	C14	5'-GGCACGGUAGCGUCGGGAGG-3'	(((........)))...... ( -1.70)	loop	mRNA	293T;HeLa	UBS-seq:(High);m5C-RIP-seq:(Medium);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;38168991;m6A-Atlas database;RMVar database	31061524;38168991	20	chr3:197791327-197791346	LRCH3	HGNC:28637	ENSG00000186001	GGCACGGUAGCGUCGGGAGG
hsa_m5C_3715	chr11	64288440	64288441	+	ENST00000438980	C1562	m5C	C13	5'-GGUGGGCUUCUUCCGGGUGCACCGG-3'	((((.((((.....)))).)))).. (-10.20)	loop	mRNA	HeLa,rescue;HeLa,With in vitro transcribed m5C spike-ins;293T;HeLa,rip antibody: ALYREF;HeLa,siControl;frontal_cortex,293T,lung,Testis,HeLa,T24;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	28418038;31061524;38168991	25	chr11:64288429-64288453	GPR137	HGNC:24300	ENSG00000173264	GGUGGGCUUCUUCCGGGUGCACCGG
hsa_m5C_3716	chr11	64288441	64288442	+	ENST00000438980	C1563	m5C	C14	5'-GGUGGGCUUCUUCCGGGUGCACCGG-3'	((((.((((.....)))).)))).. (-10.20)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	25	chr11:64288429-64288453	GPR137	HGNC:24300	ENSG00000173264	GGUGGGCUUCUUCCGGGUGCACCGG
hsa_m5C_3717	chr5	177133914	177133915	+	ENST00000439151	C143	m5C	C10	5'-GGGUCACCCCCUCCCCCCAGCUGGCCCGGGAGGGGGCGCGGGG-3'	......(((((((((.((....))...)))))))))....... (-22.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr5:177133906-177133948	NSD1	HGNC:14234	ENSG00000165671	GGGUCACCCCCUCCCCCCAGCUGGCCCGGGAGGGGGCGCGGGG
hsa_m5C_3718	chr5	177133915	177133916	+	ENST00000439151	C144	m5C	C11	5'-GGGUCACCCCCUCCCCCCAGCUGGCCCGGGAGGGGGCGCGGGG-3'	......(((((((((.((....))...)))))))))....... (-22.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr5:177133906-177133948	NSD1	HGNC:14234	ENSG00000165671	GGGUCACCCCCUCCCCCCAGCUGGCCCGGGAGGGGGCGCGGGG
hsa_m5C_3719	chr5	177133917	177133918	+	ENST00000439151	C146	m5C	C13	5'-GGGUCACCCCCUCCCCCCAGCUGGCCCGGGAGGGGGCGCGGGG-3'	......(((((((((.((....))...)))))))))....... (-22.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr5:177133906-177133948	NSD1	HGNC:14234	ENSG00000165671	GGGUCACCCCCUCCCCCCAGCUGGCCCGGGAGGGGGCGCGGGG
hsa_m5C_3720	chr5	177133918	177133919	+	ENST00000439151	C147	m5C	C14	5'-GGGUCACCCCCUCCCCCCAGCUGGCCCGGGAGGGGGCGCGGGG-3'	......(((((((((.((....))...)))))))))....... (-22.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr5:177133906-177133948	NSD1	HGNC:14234	ENSG00000165671	GGGUCACCCCCUCCCCCCAGCUGGCCCGGGAGGGGGCGCGGGG
hsa_m5C_3721	chr5	177133919	177133920	+	ENST00000439151	C148	m5C	C15	5'-GGGUCACCCCCUCCCCCCAGCUGGCCCGGGAGGGGGCGCGGGG-3'	......(((((((((.((....))...)))))))))....... (-22.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr5:177133906-177133948	NSD1	HGNC:14234	ENSG00000165671	GGGUCACCCCCUCCCCCCAGCUGGCCCGGGAGGGGGCGCGGGG
hsa_m5C_3722	chr5	177133920	177133921	+	ENST00000439151	C149	m5C	C16	5'-GGGUCACCCCCUCCCCCCAGCUGGCCCGGGAGGGGGCGCGGGG-3'	......(((((((((.((....))...)))))))))....... (-22.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr5:177133906-177133948	NSD1	HGNC:14234	ENSG00000165671	GGGUCACCCCCUCCCCCCAGCUGGCCCGGGAGGGGGCGCGGGG
hsa_m5C_3723	chr5	177133921	177133922	+	ENST00000439151	C150	m5C	C17	5'-GGGUCACCCCCUCCCCCCAGCUGGCCCGGGAGGGGGCGCGGGG-3'	......(((((((((.((....))...)))))))))....... (-22.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr5:177133906-177133948	NSD1	HGNC:14234	ENSG00000165671	GGGUCACCCCCUCCCCCCAGCUGGCCCGGGAGGGGGCGCGGGG
hsa_m5C_3724	chr5	177133922	177133923	+	ENST00000439151	C151	m5C	C18	5'-GGGUCACCCCCUCCCCCCAGCUGGCCCGGGAGGGGGCGCGGGG-3'	......(((((((((.((....))...)))))))))....... (-22.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr5:177133906-177133948	NSD1	HGNC:14234	ENSG00000165671	GGGUCACCCCCUCCCCCCAGCUGGCCCGGGAGGGGGCGCGGGG
hsa_m5C_3725	chr5	80637912	80637913	-	ENST00000439211	C833	m5C	C4	5'-GGUCUGGAUAGUUGGUGG-3'	NA	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr5:80637899-80637916	DHFR	HGNC:2861	ENSG00000228716	GGUCUGGAUAGUUGGUGG
hsa_m5C_3726	chr3	186584466	186584467	+	ENST00000439351	C1819	m5C	C5	5'-GGAGCGAAGCUAUGGAAGAAAGGGGAAGGG-3'	..(((...)))................... ( -0.70)	bulge	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr3:186584463-186584492	DNAJB11	HGNC:14889	ENSG00000090520	GGAGCGAAGCUAUGGAAGAAAGGGGAAGGG
hsa_m5C_3727	chr3	186584471	186584472	+	ENST00000439351	C1824	m5C	C10	5'-GGAGCGAAGCUAUGGAAGAAAGGGGAAGGG-3'	..(((...)))................... ( -0.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr3:186584463-186584492	DNAJB11	HGNC:14889	ENSG00000090520	GGAGCGAAGCUAUGGAAGAAAGGGGAAGGG
hsa_m5C_3728	chr19	52282214	52282215	+	ENST00000439461	C150	m5C	C7	5'-GGAGAACUACAGGAACCUGGUCUCCCUGG-3'	(((((.(((........)))))))).... ( -7.20)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr19:52282209-52282237	ZNF766	HGNC:28063	ENSG00000196214	GGAGAACUACAGGAACCUGGUCUCCCUGG
hsa_m5C_3729	chr19	12144966	12144967	-	ENST00000439556	C1625	m5C	C6	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr19:12144958-12144972	ZNF625	HGNC:30571	ENSG00000257591	GGAGGCCGAGGCAGG
hsa_m5C_3730	chr19	12144965	12144966	-	ENST00000439556	C1626	m5C	C7	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr19:12144958-12144972	ZNF625	HGNC:30571	ENSG00000257591	GGAGGCCGAGGCAGG
hsa_m5C_3731	chr1	149935683	149935684	-	ENST00000439741	C396	m5C	C22	5'-GGGAGCAGAUCCUAGCAUGGGCCCCAGGGGUGAGGAAGGG-3'	(((.((....((......)))))))............... ( -7.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	40	chr1:149935666-149935705	MTMR11	HGNC:24307	ENSG00000014914	GGGAGCAGAUCCUAGCAUGGGCCCCAGGGGUGAGGAAGGG
hsa_m5C_3732	chr12	6329008	6329009	-	ENST00000440083	C2161	m5C	C16	5'-GGCUGCUCGGGGGCCCCUGG-3'	((((.......))))..... ( -4.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr12:6329005-6329024	TNFRSF1A	HGNC:11916	ENSG00000067182	GGCUGCUCGGGGGCCCCUGG
hsa_m5C_3733	chr12	3638218	3638219	-	ENST00000440314	C1988	m5C	C17	5'-GGAAGAGGUCUCUGACCAGGGGGUACAGG-3'	...........((((((....))).))). ( -5.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	29	chr12:3638207-3638235	CRACR2A	HGNC:28657	ENSG00000130038	GGAAGAGGUCUCUGACCAGGGGGUACAGG
hsa_m5C_3734	chr11	69294394	69294395	+	ENST00000441339	C241	m5C	C4	5'-GGGCCGGGGCGUGCAUGGCCUCAGGG-3'	...(((((((.......))))).)). (-10.00)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	26	chr11:69294392-69294417	MYEOV	HGNC:7563	ENSG00000172927	GGGCCGGGGCGUGCAUGGCCUCAGGG
hsa_m5C_3735	chr11	69294395	69294396	+	ENST00000441339	C242	m5C	C5	5'-GGGCCGGGGCGUGCAUGGCCUCAGGG-3'	...(((((((.......))))).)). (-10.00)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	26	chr11:69294392-69294417	MYEOV	HGNC:7563	ENSG00000172927	GGGCCGGGGCGUGCAUGGCCUCAGGG
hsa_m5C_3736	chr11	69294400	69294401	+	ENST00000441339	C247	m5C	C10	5'-GGGCCGGGGCGUGCAUGGCCUCAGGG-3'	...(((((((.......))))).)). (-10.00)	bulge	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	26	chr11:69294392-69294417	MYEOV	HGNC:7563	ENSG00000172927	GGGCCGGGGCGUGCAUGGCCUCAGGG
hsa_m5C_3737	chr6	30578108	30578109	+	ENST00000441867	C317	m5C	C7	5'-GGCAGGCGGAAGAAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	16	chr6:30578103-30578118	ABCF1	HGNC:70	ENSG00000204574	GGCAGGCGGAAGAAGG
hsa_m5C_3738	chr14	102334580	102334581	+	ENST00000442396	C1464	m5C	C8	5'-GGAGGAUCUGGUGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	14	chr14:102334574-102334587	ZNF839	HGNC:20345	ENSG00000022976	GGAGGAUCUGGUGG
hsa_m5C_3739	chr8	143835362	143835363	-	ENST00000442628	C1944	m5C	C12	5'-GGCUGCCUGGCCGGGG-3'	((((....)))).... ( -5.20)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	16	chr8:143835359-143835374	NRBP2	HGNC:19339	ENSG00000185189	GGCUGCCUGGCCGGGG
hsa_m5C_3740	chr12	6914136	6914137	+	ENST00000443597	C1606	m5C	C37	5'-GGGCCGCCCUCGGGCAGGCGUGGGUGAGAGCCAAGACCGCGUGGG-3'	..((((((....))).)))((((.............))))..... (-15.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	45	chr12:6914101-6914145	LRRC23	HGNC:19138	ENSG00000010626	GGGCCGCCCUCGGGCAGGCGUGGGUGAGAGCCAAGACCGCGUGGG
hsa_m5C_3741	chr6	24403215	24403216	+	ENST00000443868	C309	m5C	C4	5'-GGCCCGACCGGCUCCGCGUGGCAG^G-3'	.(((((..((....)))).)))... ( -5.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr6:24403213-24403236;24405168-24405168	MRS2	HGNC:13785	ENSG00000124532	GGCCCGACCGGCUCCGCGUGGCAGG
hsa_m5C_3742	chr7	102320451	102320452	+	ENST00000444095	C1773	m5C	C15	5'-GGAGUCAGGGGGCUCGG-3'	.(((((....))))).. ( -5.90)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	17	chr7:102320438-102320454	SH2B2	HGNC:17381	ENSG00000160999	GGAGUCAGGGGGCUCGG
hsa_m5C_3743	chr7	50539917	50539918	-	ENST00000444124	C461	m5C	C27	5'-GGGGCCAUUGGCUGCAUCGGCUUCUCCUGG-3'	((((((..((....))..))))))...... ( -9.40)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr7:50539915-50539944	DDC	HGNC:2719	ENSG00000132437	GGGGCCAUUGGCUGCAUCGGCUUCUCCUGG
hsa_m5C_3744	chr19	55383757	55383758	-	ENST00000444469	C535	m5C	C4	5'-GGGCCCGGGGCGGCGGGCGCGGG-3'	..(((((......)))))..... (-10.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	23	chr19:55383739-55383761	TMEM238	HGNC:40042	ENSG00000233493	GGGCCCGGGGCGGCGGGCGCGGG
hsa_m5C_3745	chr19	55383756	55383757	-	ENST00000444469	C536	m5C	C5	5'-GGGCCCGGGGCGGCGGGCGCGGG-3'	..(((((......)))))..... (-10.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	23	chr19:55383739-55383761	TMEM238	HGNC:40042	ENSG00000233493	GGGCCCGGGGCGGCGGGCGCGGG
hsa_m5C_3746	chr19	55383755	55383756	-	ENST00000444469	C537	m5C	C6	5'-GGGCCCGGGGCGGCGGGCGCGGG-3'	..(((((......)))))..... (-10.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr19:55383739-55383761	TMEM238	HGNC:40042	ENSG00000233493	GGGCCCGGGGCGGCGGGCGCGGG
hsa_m5C_3747	chr19	55383750	55383751	-	ENST00000444469	C542	m5C	C11	5'-GGGCCCGGGGCGGCGGGCGCGGG-3'	..(((((......)))))..... (-10.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	23	chr19:55383739-55383761	TMEM238	HGNC:40042	ENSG00000233493	GGGCCCGGGGCGGCGGGCGCGGG
hsa_m5C_3748	chr19	55383747	55383748	-	ENST00000444469	C545	m5C	C14	5'-GGGCCCGGGGCGGCGGGCGCGGG-3'	..(((((......)))))..... (-10.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	23	chr19:55383739-55383761	TMEM238	HGNC:40042	ENSG00000233493	GGGCCCGGGGCGGCGGGCGCGGG
hsa_m5C_3749	chr19	55383743	55383744	-	ENST00000444469	C549	m5C	C18	5'-GGGCCCGGGGCGGCGGGCGCGGG-3'	..(((((......)))))..... (-10.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr19:55383739-55383761	TMEM238	HGNC:40042	ENSG00000233493	GGGCCCGGGGCGGCGGGCGCGGG
hsa_m5C_3750	chr1	2590030	2590031	+	ENST00000444521	C1391	m5C	C5	5'-GGGGCGGCCGGCCCGGGAGGG-3'	.((((.....))))....... ( -8.30)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr1:2590027-2590047	PRXL2B	HGNC:28390	ENSG00000157870	GGGGCGGCCGGCCCGGGAGGG
hsa_m5C_3751	chr1	2590033	2590034	+	ENST00000444521	C1394	m5C	C8	5'-GGGGCGGCCGGCCCGGGAGGG-3'	.((((.....))))....... ( -8.30)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr1:2590027-2590047	PRXL2B	HGNC:28390	ENSG00000157870	GGGGCGGCCGGCCCGGGAGGG
hsa_m5C_3752	chr3	58320879	58320880	+	ENST00000445193	C4170	m5C	C6	5'-GGAGGCCAAGGCAGG-3'	....((....))... ( -1.50)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	15	chr3:58320875-58320889	RPP14	HGNC:30327	ENSG00000163684	GGAGGCCAAGGCAGG
hsa_m5C_3753	chr3	58320880	58320881	+	ENST00000445193	C4171	m5C	C7	5'-GGAGGCCAAGGCAGG-3'	....((....))... ( -1.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	15	chr3:58320875-58320889	RPP14	HGNC:30327	ENSG00000163684	GGAGGCCAAGGCAGG
hsa_m5C_3754	chr3	58320885	58320886	+	ENST00000445193	C4176	m5C	C12	5'-GGAGGCCAAGGCAGG-3'	....((....))... ( -1.50)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	15	chr3:58320875-58320889	RPP14	HGNC:30327	ENSG00000163684	GGAGGCCAAGGCAGG
hsa_m5C_3755	chr3	58306279	58306280	+	ENST00000445193	C19	m5C	C10	5'-GGGGCGGGACGAGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr3:58306271-58306284	RPP14	HGNC:30327	ENSG00000163684	GGGGCGGGACGAGG
hsa_m5C_3756	chr9	136853114	136853115	+	ENST00000445819	C110	m5C	C16	5'-GG^CAGGGUCCUCAGGCUGGG-3'	(((..((...))..)))... ( -2.00)	loop	mRNA	Testis;HeLa	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	20	chr9:136852461-136852462;136853102-136853119	MAMDC4	HGNC:24083	ENSG00000177943	GGCAGGGUCCUCAGGCUGGG
hsa_m5C_3757	chr9	136855285	136855286	+	ENST00000445819	C1280	m5C	C21	5'-GGGCAGACAGGCCCGGGGGGCGUCGUGGG-3'	...(((((..((((...))))))).)).. ( -8.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	29	chr9:136855266-136855294	MAMDC4	HGNC:24083	ENSG00000177943	GGGCAGACAGGCCCGGGGGGCGUCGUGGG
hsa_m5C_3758	chr19	7612807	7612808	+	ENST00000446248	C2497	m5C	C24	5'-GGCCACCCGGCGCAGCCCUGGGCCCGGG-3'	.....(((((.((........))))))) (-11.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr19:7612785-7612812	CAMSAP3	HGNC:29307	ENSG00000076826	GGCCACCCGGCGCAGCCCUGGGCCCGGG
hsa_m5C_3759	chr19	7595921	7595922	+	ENST00000446248	C21	m5C	C3	5'-GGCCCGGCUGGGG-3'	..(((....))). ( -3.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	13	chr19:7595920-7595932	CAMSAP3	HGNC:29307	ENSG00000076826	GGCCCGGCUGGGG
hsa_m5C_3760	chr19	7595922	7595923	+	ENST00000446248	C22	m5C	C4	5'-GGCCCGGCUGGGG-3'	..(((....))). ( -3.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	13	chr19:7595920-7595932	CAMSAP3	HGNC:29307	ENSG00000076826	GGCCCGGCUGGGG
hsa_m5C_3761	chr19	7595923	7595924	+	ENST00000446248	C23	m5C	C5	5'-GGCCCGGCUGGGG-3'	..(((....))). ( -3.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	13	chr19:7595920-7595932	CAMSAP3	HGNC:29307	ENSG00000076826	GGCCCGGCUGGGG
hsa_m5C_3762	chr19	7612567	7612568	+	ENST00000446248	C2257	m5C	C12	5'-GGGCCCGGUGCCCCACGAGGGGCUGGGG-3'	...((((..(((((....))))))))). (-15.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr19:7612557-7612584	CAMSAP3	HGNC:29307	ENSG00000076826	GGGCCCGGUGCCCCACGAGGGGCUGGGG
hsa_m5C_3763	chr16	87702307	87702308	-	ENST00000446344	C284	m5C	C12	5'-GGGCCUGGGAGCCCCCGGCAGACCGG-3'	((((......))))((((....)))) (-11.20)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	26	chr16:87702294-87702319	KLHDC4	HGNC:25272	ENSG00000104731	GGGCCUGGGAGCCCCCGGCAGACCGG
hsa_m5C_3764	chr16	87702306	87702307	-	ENST00000446344	C285	m5C	C13	5'-GGGCCUGGGAGCCCCCGGCAGACCGG-3'	((((......))))((((....)))) (-11.20)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	26	chr16:87702294-87702319	KLHDC4	HGNC:25272	ENSG00000104731	GGGCCUGGGAGCCCCCGGCAGACCGG
hsa_m5C_3765	chr16	87702305	87702306	-	ENST00000446344	C286	m5C	C14	5'-GGGCCUGGGAGCCCCCGGCAGACCGG-3'	((((......))))((((....)))) (-11.20)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	26	chr16:87702294-87702319	KLHDC4	HGNC:25272	ENSG00000104731	GGGCCUGGGAGCCCCCGGCAGACCGG
hsa_m5C_3766	chr16	87702304	87702305	-	ENST00000446344	C287	m5C	C15	5'-GGGCCUGGGAGCCCCCGGCAGACCGG-3'	((((......))))((((....)))) (-11.20)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	26	chr16:87702294-87702319	KLHDC4	HGNC:25272	ENSG00000104731	GGGCCUGGGAGCCCCCGGCAGACCGG
hsa_m5C_3767	chr16	87702303	87702304	-	ENST00000446344	C288	m5C	C16	5'-GGGCCUGGGAGCCCCCGGCAGACCGG-3'	((((......))))((((....)))) (-11.20)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	26	chr16:87702294-87702319	KLHDC4	HGNC:25272	ENSG00000104731	GGGCCUGGGAGCCCCCGGCAGACCGG
hsa_m5C_3768	chr16	87702300	87702301	-	ENST00000446344	C291	m5C	C19	5'-GGGCCUGGGAGCCCCCGGCAGACCGG-3'	((((......))))((((....)))) (-11.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	26	chr16:87702294-87702319	KLHDC4	HGNC:25272	ENSG00000104731	GGGCCUGGGAGCCCCCGGCAGACCGG
hsa_m5C_3769	chr10	91410487	91410488	+	ENST00000446394	C204	m5C	C9	5'-GGUGGUGGCGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	11	chr10:91410480-91410490	HECTD2	HGNC:26736	ENSG00000165338	GGUGGUGGCGG
hsa_m5C_3770	chr11	1763607	1763608	-	ENST00000446489	C142	m5C	C12	5'-GGGGCGCCGGGCUCCGGAGGUGCAGGGGACCCGGG-3'	......(((((((((.........)))).))))). (-16.10)	loop	lncRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	35	chr11:1763585-1763619	NA	NA	ENSG00000229512	GGGGCGCCGGGCUCCGGAGGUGCAGGGGACCCGGG
hsa_m5C_3771	chr7	44707898	44707899	+	ENST00000447398	C3059	m5C	C22	5'-G^GUAUGCCGGCCGGGACCCAGCGG-3'	((....))..(((........))) ( -3.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	24	chr7:44707736-44707736;44707879-44707901	OGDH	HGNC:8124	ENSG00000105953	GGUAUGCCGGCCGGGACCCAGCGG
hsa_m5C_3772	chr6	34237227	34237228	+	ENST00000447654	C356	m5C	C6	5'-GGCGGCCGCGGCGG-3'	....((....)).. ( -1.40)	loop	mRNA	Different_Methylation_MDA468-MCF10A	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	30009162	14	chr6:34237223-34237236	HMGA1	HGNC:5010	ENSG00000137309	GGCGGCCGCGGCGG
hsa_m5C_3773	chr6	34237228	34237229	+	ENST00000447654	C357	m5C	C7	5'-GGCGGCCGCGGCGG-3'	....((....)).. ( -1.40)	loop	mRNA	293T;Muscle	UBS-seq:(High);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	31061524;38168991	14	chr6:34237223-34237236	HMGA1	HGNC:5010	ENSG00000137309	GGCGGCCGCGGCGG
hsa_m5C_3774	chr6	34246119	34246120	+	ENST00000447654	C2049	m5C	C16	5'-GGGUGUAGGGGCCACCUCCUCCCCCUGUUCUGUUGGGGAGGGG-3'	.(((......)))..(((((((((..........))))))))) (-18.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	43	chr6:34246105-34246147	HMGA1	HGNC:5010	ENSG00000137309	GGGUGUAGGGGCCACCUCCUCCCCCUGUUCUGUUGGGGAGGGG
hsa_m5C_3775	chr6	34246124	34246125	+	ENST00000447654	C2054	m5C	C21	5'-GGGUGUAGGGGCCACCUCCUCCCCCUGUUCUGUUGGGGAGGGG-3'	.(((......)))..(((((((((..........))))))))) (-18.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	43	chr6:34246105-34246147	HMGA1	HGNC:5010	ENSG00000137309	GGGUGUAGGGGCCACCUCCUCCCCCUGUUCUGUUGGGGAGGGG
hsa_m5C_3776	chr6	34246125	34246126	+	ENST00000447654	C2055	m5C	C22	5'-GGGUGUAGGGGCCACCUCCUCCCCCUGUUCUGUUGGGGAGGGG-3'	.(((......)))..(((((((((..........))))))))) (-18.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	43	chr6:34246105-34246147	HMGA1	HGNC:5010	ENSG00000137309	GGGUGUAGGGGCCACCUCCUCCCCCUGUUCUGUUGGGGAGGGG
hsa_m5C_3777	chr1	200669878	200669879	-	ENST00000447706	C29	m5C	C5	5'-GGGCCGCAGUCCUGACGAGCGGGUCAGGG-3'	..........((((((......)))))). (-10.60)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	29	chr1:200669855-200669883	DDX59	HGNC:25360	ENSG00000118197	GGGCCGCAGUCCUGACGAGCGGGUCAGGG
hsa_m5C_3778	chr17	7845425	7845426	+	ENST00000448097	C486	m5C	C23	5'-GGGGCAGGGGGCCGUGCCCAAUCUCCAGGGCUCCUGGG-3'	.(((((((...)).))))).....(((((...))))). (-16.60)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	38	chr17:7845404-7845441	KDM6B	HGNC:29012	ENSG00000132510	GGGGCAGGGGGCCGUGCCCAAUCUCCAGGGCUCCUGGG
hsa_m5C_3779	chr17	7845433	7845434	+	ENST00000448097	C494	m5C	C31	5'-GGGGCAGGGGGCCGUGCCCAAUCUCCAGGGCUCCUGGG-3'	.(((((((...)).))))).....(((((...))))). (-16.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	38	chr17:7845404-7845441	KDM6B	HGNC:29012	ENSG00000132510	GGGGCAGGGGGCCGUGCCCAAUCUCCAGGGCUCCUGGG
hsa_m5C_3780	chr1	154970568	154970569	-	ENST00000448116	C179	m5C	C3	5'-GGCAGGGGGGCCAGG-3'	(((......)))... ( -4.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr1:154970557-154970571	SHC1	HGNC:10840	ENSG00000160691	GGCAGGGGGGCCAGG
hsa_m5C_3781	chr1	154970560	154970561	-	ENST00000448116	C187	m5C	C11	5'-GGCAGGGGGGCCAGG-3'	(((......)))... ( -4.40)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	15	chr1:154970557-154970571	SHC1	HGNC:10840	ENSG00000160691	GGCAGGGGGGCCAGG
hsa_m5C_3782	chr1	154970559	154970560	-	ENST00000448116	C188	m5C	C12	5'-GGCAGGGGGGCCAGG-3'	(((......)))... ( -4.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr1:154970557-154970571	SHC1	HGNC:10840	ENSG00000160691	GGCAGGGGGGCCAGG
hsa_m5C_3783	chr1	154962970	154962971	-	ENST00000448116	C2808	m5C	C8	5'-GGGAGGGCGGGGUGGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr1:154962963-154962978	SHC1	HGNC:10840	ENSG00000160691	GGGAGGGCGGGGUGGG
hsa_m5C_3784	chr17	63842515	63842516	-	ENST00000448276	C170	m5C	C25	5'-GGGUCCGGCAGGAGGCGUGGGGGGCCCCGGGG-3'	((((((..((.......))..))))))..... (-11.10)	bulge	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	32	chr17:63842509-63842540	SMARCD2	HGNC:11107	ENSG00000108604	GGGUCCGGCAGGAGGCGUGGGGGGCCCCGGGG
hsa_m5C_3785	chr17	63842514	63842515	-	ENST00000448276	C171	m5C	C26	5'-GGGUCCGGCAGGAGGCGUGGGGGGCCCCGGGG-3'	((((((..((.......))..))))))..... (-11.10)	bulge	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	32	chr17:63842509-63842540	SMARCD2	HGNC:11107	ENSG00000108604	GGGUCCGGCAGGAGGCGUGGGGGGCCCCGGGG
hsa_m5C_3786	chr17	63842513	63842514	-	ENST00000448276	C172	m5C	C27	5'-GGGUCCGGCAGGAGGCGUGGGGGGCCCCGGGG-3'	((((((..((.......))..))))))..... (-11.10)	bulge	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	32	chr17:63842509-63842540	SMARCD2	HGNC:11107	ENSG00000108604	GGGUCCGGCAGGAGGCGUGGGGGGCCCCGGGG
hsa_m5C_3787	chr17	63842512	63842513	-	ENST00000448276	C173	m5C	C28	5'-GGGUCCGGCAGGAGGCGUGGGGGGCCCCGGGG-3'	((((((..((.......))..))))))..... (-11.10)	bulge	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	32	chr17:63842509-63842540	SMARCD2	HGNC:11107	ENSG00000108604	GGGUCCGGCAGGAGGCGUGGGGGGCCCCGGGG
hsa_m5C_3788	chr7	100359014	100359015	+	ENST00000448382	C1664	m5C	C4	5'-GGACACCCGGAGAUCAGGGAGG-3'	.....(((........)))... ( -4.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr7:100359012-100359033	PILRB	HGNC:18297	ENSG00000121716	GGACACCCGGAGAUCAGGGAGG
hsa_m5C_3789	chr17	68307000	68307001	+	ENST00000448504	C304	m5C	C9	5'-GGGGCUGACGGCGG-3'	...(((...))).. ( -1.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	14	chr17:68306993-68307006	ARSG	HGNC:24102	ENSG00000141337	GGGGCUGACGGCGG
hsa_m5C_3790	chr7	44056881	44056882	+	ENST00000448521	C489	m5C	C4	5'-GGACGUGGGACCCCAGGCCCCAGUG^G-3'	..((.((((.((...)).)))))).. ( -7.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	26	chr7:44056879-44056903;44057782-44057782	DBNL	HGNC:2696	ENSG00000136279	GGACGUGGGACCCCAGGCCCCAGUGG
hsa_m5C_3791	chr16	69119815	69119816	-	ENST00000448552	C1115	m5C	C12	5'-GGCCAGUUGGCCUGGGCCCAGG-3'	((((....)))).......... ( -7.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr16:69119806-69119827	CHTF8	HGNC:24353	ENSG00000168802	GGCCAGUUGGCCUGGGCCCAGG
hsa_m5C_3792	chr10	21516914	21516915	-	ENST00000449193	C3161	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	11	chr10:21516907-21516917	SKIDA1	HGNC:32697	ENSG00000180592	GGCGGCGGCGG
hsa_m5C_3793	chr10	21516911	21516912	-	ENST00000449193	C3164	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	11	chr10:21516907-21516917	SKIDA1	HGNC:32697	ENSG00000180592	GGCGGCGGCGG
hsa_m5C_3794	chr10	21516908	21516909	-	ENST00000449193	C3167	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	11	chr10:21516907-21516917	SKIDA1	HGNC:32697	ENSG00000180592	GGCGGCGGCGG
hsa_m5C_3795	chr2	64902332	64902333	-	ENST00000449259	C2435	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	lncRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr2:64902324-64902338	LINC02245	HGNC:53134	ENSG00000237638	GGAGGCUGAGGCAGG
hsa_m5C_3796	chr2	64902326	64902327	-	ENST00000449259	C2441	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	lncRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr2:64902324-64902338	LINC02245	HGNC:53134	ENSG00000237638	GGAGGCUGAGGCAGG
hsa_m5C_3797	chr17	18727726	18727727	+	ENST00000449552	C1654	m5C	C18	5'-GGAGCUGGAGACGAUGGCGG-3'	...((((.......)))).. ( -1.60)	loop	lncRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	20	chr17:18727710-18727729	NA	NA	ENSG00000291110	GGAGCUGGAGACGAUGGCGG
hsa_m5C_3798	chr12	121778179	121778180	+	ENST00000449592	C3622	m5C	C10	5'-GGCCGGGCACGGUGG-3'	.((((....)))).. ( -5.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	15	chr12:121778171-121778185	TMEM120B	HGNC:32008	ENSG00000188735	GGCCGGGCACGGUGG
hsa_m5C_3799	chr3	49684183	49684184	-	ENST00000449682	C2805	m5C	C37	5'-GGGACUGUUGGCCCCUGUGGGGGCCUGUGAG^GGUGACUACGGGGG-3'	...........(((((((((..((((....))))..))))))))) (-22.00)	loop	mRNA	lung	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	45	chr3:49684176-49684189;49684314-49684344	MST1	HGNC:7380	ENSG00000173531	GGGACUGUUGGCCCCUGUGGGGGCCUGUGAGGGUGACUACGGGGG
hsa_m5C_3800	chr3	46991467	46991468	+	ENST00000450053	C901	m5C	C10	5'-GGUGCGGGGCUGG-3'	(((.....))).. ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	13	chr3:46991459-46991471	NBEAL2	HGNC:31928	ENSG00000160796	GGUGCGGGGCUGG
hsa_m5C_3801	chr17	40089745	40089746	+	ENST00000450525	C1948	m5C	C9	5'-GGGAAGGGCGGGAGGAUUGAGAAGGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;RNAfold:(High)	m6A-Atlas database	28418038	26	chr17:40089738-40089763	THRA	HGNC:11796	ENSG00000126351	GGGAAGGGCGGGAGGAUUGAGAAGGG
hsa_m5C_3802	chr17	40062992	40062993	+	ENST00000450525	C29	m5C	C13	5'-GGGCGCAGGAGGCGGGCGGCCCGG-3'	((((((.........)).)))).. ( -8.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr17:40062981-40063004	THRA	HGNC:11796	ENSG00000126351	GGGCGCAGGAGGCGGGCGGCCCGG
hsa_m5C_3803	chr6	138988220	138988221	-	ENST00000450536	C33	m5C	C19	5'-GGGCGCGUCGGGGCCGGGCCGGG-3'	.(((.((.......)).)))... ( -7.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	23	chr6:138988217-138988239	REPS1	HGNC:15578	ENSG00000135597	GGGCGCGUCGGGGCCGGGCCGGG
hsa_m5C_3804	chr6	138987708	138987709	-	ENST00000450536	C545	m5C	C31	5'-GGGGCCGGGCCCCGAGUAGUGCAUGCGGGGCGGG-3'	....((..((((((.((.....)).)))))).)) (-13.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	34	chr6:138987706-138987739	REPS1	HGNC:15578	ENSG00000135597	GGGGCCGGGCCCCGAGUAGUGCAUGCGGGGCGGG
hsa_m5C_3805	chr19	55654367	55654368	+	ENST00000450554	C223	m5C	C9	5'-GGAAGGAGCCGAGGUACCCACGG-3'	........(((.((...)).))) ( -2.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr19:55654360-55654382	U2AF2	HGNC:23156	ENSG00000063244	GGAAGGAGCCGAGGUACCCACGG
hsa_m5C_3806	chr3	10108228	10108229	-	ENST00000450660	C27	m5C	C6	5'-GGGCCCGGAUGGUGGGACUGGG-3'	.((((((.....)))).))... ( -5.40)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	22	chr3:10108213-10108234	FANCD2OS	HGNC:28623	ENSG00000163705	GGGCCCGGAUGGUGGGACUGGG
hsa_m5C_3807	chr17	46335733	46335734	-	ENST00000450673	C4408	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	31358969	15	chr17:46335725-46335739	ARL17B	HGNC:32387	ENSG00000228696	GGAGGCUGAGGCAGG
hsa_m5C_3808	chr17	46335727	46335728	-	ENST00000450673	C4414	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	31358969	15	chr17:46335725-46335739	ARL17B	HGNC:32387	ENSG00000228696	GGAGGCUGAGGCAGG
hsa_m5C_3809	chr7	87059627	87059628	-	ENST00000450689	C27	m5C	C14	5'-GGCGGACGGGCAGCGGGUGACGG-3'	.((......))..((.....)). ( -2.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	23	chr7:87059619-87059641	ELAPOR2	HGNC:21945	ENSG00000164659	GGCGGACGGGCAGCGGGUGACGG
hsa_m5C_3810	chr8	22601789	22601790	+	ENST00000450780	C802	m5C	C5	5'-GGUGCUGGAGCAGAUGGCAAGG-3'	..(((((.......)))))... ( -2.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr8:22601786-22601807	NA	NA	ENSG00000248235	GGUGCUGGAGCAGAUGGCAAGG
hsa_m5C_3811	chr8	22601795	22601796	+	ENST00000450780	C808	m5C	C11	5'-GGUGCUGGAGCAGAUGGCAAGG-3'	..(((((.......)))))... ( -2.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr8:22601786-22601807	NA	NA	ENSG00000248235	GGUGCUGGAGCAGAUGGCAAGG
hsa_m5C_3812	chr11	20363895	20363896	+	ENST00000451739	C183	m5C	C11	5'-GGACCCGGGGCCGGGGGCUGG-3'	...((((....))))...... ( -6.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	21	chr11:20363886-20363906	HTATIP2	HGNC:16637	ENSG00000109854	GGACCCGGGGCCGGGGGCUGG
hsa_m5C_3813	chr11	20363896	20363897	+	ENST00000451739	C184	m5C	C12	5'-GGACCCGGGGCCGGGGGCUGG-3'	...((((....))))...... ( -6.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	21	chr11:20363886-20363906	HTATIP2	HGNC:16637	ENSG00000109854	GGACCCGGGGCCGGGGGCUGG
hsa_m5C_3814	chr5	180280453	180280454	-	ENST00000452135	C391	m5C	C12	5'-GGCUCUGGGGCCCAAGG-3'	((((....))))..... ( -4.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr5:180280449-180280465	MAPK9	HGNC:6886	ENSG00000050748	GGCUCUGGGGCCCAAGG
hsa_m5C_3815	chr11	108365777	108365778	+	ENST00000452508	C9630	m5C	C6	5'-GGAGGCCGAGGUGAGCGG-3'	.....(((.......))) ( -1.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	18	chr11:108365773-108365790	ATM	HGNC:795	ENSG00000149311	GGAGGCCGAGGUGAGCGG
hsa_m5C_3816	chr11	108365778	108365779	+	ENST00000452508	C9631	m5C	C7	5'-GGAGGCCGAGGUGAGCGG-3'	.....(((.......))) ( -1.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	18	chr11:108365773-108365790	ATM	HGNC:795	ENSG00000149311	GGAGGCCGAGGUGAGCGG
hsa_m5C_3817	chrX	53225188	53225189	-	ENST00000452825	C234	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	11	chrX:53225184-53225194	KDM5C	HGNC:11114	ENSG00000126012	GGCGGCGGCGG
hsa_m5C_3818	chr1	31842256	31842257	-	ENST00000453837	C2019	m5C	C8	5'-GGGAGGCCGAGGCGGG-3'	......(((...))). ( -1.70)	loop	lncRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr1:31842249-31842264	NA	NA	ENSG00000203620	GGGAGGCCGAGGCGGG
hsa_m5C_3819	chr11	60932057	60932058	+	ENST00000453848	C1461	m5C	C4	5'-GGACGGCGGGGGGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	14	chr11:60932055-60932068	TMEM132A	HGNC:31092	ENSG00000006118	GGACGGCGGGGGGG
hsa_m5C_3820	chr11	60924678	60924679	+	ENST00000453848	C220	m5C	C5	5'-GGGGCCCUACGGCCCCUGG-3'	((((((....))))))... (-13.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr11:60924675-60924693	TMEM132A	HGNC:31092	ENSG00000006118	GGGGCCCUACGGCCCCUGG
hsa_m5C_3821	chr11	60924686	60924687	+	ENST00000453848	C228	m5C	C13	5'-GGGGCCCUACGGCCCCUGG-3'	((((((....))))))... (-13.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr11:60924675-60924693	TMEM132A	HGNC:31092	ENSG00000006118	GGGGCCCUACGGCCCCUGG
hsa_m5C_3822	chr11	60924687	60924688	+	ENST00000453848	C229	m5C	C14	5'-GGGGCCCUACGGCCCCUGG-3'	((((((....))))))... (-13.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr11:60924675-60924693	TMEM132A	HGNC:31092	ENSG00000006118	GGGGCCCUACGGCCCCUGG
hsa_m5C_3823	chr11	60924688	60924689	+	ENST00000453848	C230	m5C	C15	5'-GGGGCCCUACGGCCCCUGG-3'	((((((....))))))... (-13.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr11:60924675-60924693	TMEM132A	HGNC:31092	ENSG00000006118	GGGGCCCUACGGCCCCUGG
hsa_m5C_3824	chr11	46366837	46366838	+	ENST00000454345	C696	m5C	C3	5'-GGCCAGCACCCUGGCCCUGGGG-3'	((((((....))))))...... (-10.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	22	chr11:46366836-46366857	DGKZ	HGNC:2857	ENSG00000149091	GGCCAGCACCCUGGCCCUGGGG
hsa_m5C_3825	chr11	46366849	46366850	+	ENST00000454345	C708	m5C	C15	5'-GGCCAGCACCCUGGCCCUGGGG-3'	((((((....))))))...... (-10.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	22	chr11:46366836-46366857	DGKZ	HGNC:2857	ENSG00000149091	GGCCAGCACCCUGGCCCUGGGG
hsa_m5C_3826	chr11	46366851	46366852	+	ENST00000454345	C710	m5C	C17	5'-GGCCAGCACCCUGGCCCUGGGG-3'	((((((....))))))...... (-10.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	22	chr11:46366836-46366857	DGKZ	HGNC:2857	ENSG00000149091	GGCCAGCACCCUGGCCCUGGGG
hsa_m5C_3827	chr11	46377145	46377146	+	ENST00000454345	C2954	m5C	C8	5'-GGGGCAUCGGCCCGG-3'	.((((....)))).. ( -7.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr11:46377139-46377153	DGKZ	HGNC:2857	ENSG00000149091	GGGGCAUCGGCCCGG
hsa_m5C_3828	chr22	40333107	40333108	+	ENST00000454349	C15580	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr22:40333103-40333117	TNRC6B	HGNC:29190	ENSG00000100354	GGAGGCUGAGGCAGG
hsa_m5C_3829	chr22	40266844	40266845	+	ENST00000454349	C2826	m5C	C12	5'-GGAUGAGGAACCCAGUGGUUGG-3'	........((((....)))).. ( -2.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr22:40266834-40266855	TNRC6B	HGNC:29190	ENSG00000100354	GGAUGAGGAACCCAGUGGUUGG
hsa_m5C_3830	chr12	111686088	111686089	+	ENST00000455480	C14	m5C	C9	5'-GGUCGGAGCGGAAGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr12:111686081-111686095	ACAD10	HGNC:21597	ENSG00000111271	GGUCGGAGCGGAAGG
hsa_m5C_3831	chr1	18956449	18956450	-	ENST00000455833	C227	m5C	C9	5'-GGAACCGCCCGGCCGGCCGCGCUGG-3'	....((((.(((....))).)).)) ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr1:18956434-18956458	IFFO2	HGNC:27006	ENSG00000169991	GGAACCGCCCGGCCGGCCGCGCUGG
hsa_m5C_3832	chr1	18956440	18956441	-	ENST00000455833	C236	m5C	C18	5'-GGAACCGCCCGGCCGGCCGCGCUGG-3'	....((((.(((....))).)).)) ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr1:18956434-18956458	IFFO2	HGNC:27006	ENSG00000169991	GGAACCGCCCGGCCGGCCGCGCUGG
hsa_m5C_3833	chr7	149879458	149879459	+	ENST00000456496	C1488	m5C	C8	5'-GGACCCGCAGGGCCUGCCUGGUUCCUGG-3'	(((((.((((...))))..))))).... ( -9.00)	loop	mRNA	293T;frontal_cortex,HeLa;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;38168991	28	chr7:149879452-149879479	ATP6V0E2	HGNC:21723	ENSG00000171130	GGACCCGCAGGGCCUGCCUGGUUCCUGG
hsa_m5C_3834	chr7	149879532	149879533	+	ENST00000456496	C1562	m5C	C26	5'-GGGCCCUGGGGAGCCCUGGGCACAGCAGCGGCCGAGGG-3'	...((((.((..((.(((....)))..))..)).)))) (-16.10)	loop	mRNA	293T;HeLa,rip antibody: ALYREF;frontal_cortex	UBS-seq:(High);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	28418038;31061524;38168991	38	chr7:149879508-149879545	ATP6V0E2	HGNC:21723	ENSG00000171130	GGGCCCUGGGGAGCCCUGGGCACAGCAGCGGCCGAGGG
hsa_m5C_3835	chr19	12666570	12666571	-	ENST00000456935	C172	m5C	C3	5'-GGCUGCCGGUGCUCGGGCCGGGG-3'	.....(((((......))))).. ( -8.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr19:12666551-12666573	MAN2B1	HGNC:6826	ENSG00000104774	GGCUGCCGGUGCUCGGGCCGGGG
hsa_m5C_3836	chr22	21549644	21549645	+	ENST00000458578	C199	m5C	C15	5'-GGCGCGCUCACGGCCCGGAG^G-3'	(((.((....)))))...... ( -4.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	21	chr22:21549631-21549650;21592861-21592861	UBE2L3	HGNC:12488	ENSG00000185651	GGCGCGCUCACGGCCCGGAGG
hsa_m5C_3837	chr22	21549645	21549646	+	ENST00000458578	C200	m5C	C16	5'-GGCGCGCUCACGGCCCGGAG^G-3'	(((.((....)))))...... ( -4.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	21	chr22:21549631-21549650;21592861-21592861	UBE2L3	HGNC:12488	ENSG00000185651	GGCGCGCUCACGGCCCGGAGG
hsa_m5C_3838	chrX	153700957	153700958	-	ENST00000458587	C1323	m5C	C6	5'-GGUCCCAUGGACAAGAAGGAAGAGUAAGG-3'	.((((...))))................. ( -3.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chrX:153700935-153700963	BCAP31	HGNC:16695	ENSG00000185825	GGUCCCAUGGACAAGAAGGAAGAGUAAGG
hsa_m5C_3839	chr13	44574908	44574909	-	ENST00000458659	C1422	m5C	C8	5'-GGGAUGACUGGGGGAUCGG-3'	.......((((....)))) ( -0.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr13:44574898-44574916	TSC22D1	HGNC:16826	ENSG00000102804	GGGAUGACUGGGGGAUCGG
hsa_m5C_3840	chr13	44573173	44573174	-	ENST00000458659	C3157	m5C	C10	5'-GGUGGAUGGCGAGG-3'	NA	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;Muscle,Testis,HeLa,T24;HeLa,siControl;HeLa	RNA-BisSeq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	14	chr13:44573170-44573183	TSC22D1	HGNC:16826	ENSG00000102804	GGUGGAUGGCGAGG
hsa_m5C_3841	chr9	137835431	137835432	+	ENST00000460843	C4400	m5C	C26	5'-GGCCUGCGUGGCUGGGGCCGAGUCCCAGG-3'	((((.....))))(((((...)))))... (-12.10)	loop	mRNA	293T,liver,lung,Muscle,spleen,Testis,HeLa,T24;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;38168991	29	chr9:137835407-137835435	EHMT1	HGNC:24650	ENSG00000181090	GGCCUGCGUGGCUGGGGCCGAGUCCCAGG
hsa_m5C_3842	chr9	137619013	137619014	+	ENST00000460843	C10	m5C	C9	5'-GGGCCACGCUGCGGGCCCGGGCCAUGG-3'	(((((.((...)))))))......... (-11.50)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr9:137619006-137619032	EHMT1	HGNC:24650	ENSG00000181090	GGGCCACGCUGCGGGCCCGGGCCAUGG
hsa_m5C_3843	chr9	137619011	137619012	+	ENST00000460843	C8	m5C	C7	5'-GGGCCACGCUGCGGGCCCGGGCCAUGG-3'	(((((.((...)))))))......... (-11.50)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr9:137619006-137619032	EHMT1	HGNC:24650	ENSG00000181090	GGGCCACGCUGCGGGCCCGGGCCAUGG
hsa_m5C_3844	chr1	109063688	109063689	-	ENST00000461096	C1444	m5C	C12	5'-GGAGGCUGAGGCGG-3'	....((....)).. ( -0.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	14	chr1:109063687-109063700	TAF13	HGNC:11546	ENSG00000197780	GGAGGCUGAGGCGG
hsa_m5C_3845	chr1	109063258	109063259	-	ENST00000461096	C1874	m5C	C7	5'-GGGAGGCCAAGGCGGGCGGAUCACG-3'	((...(((......)))...))... ( -5.20)	bulge	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	25	chr1:109063241-109063265	TAF13	HGNC:11546	ENSG00000197780	GGGAGGCCAAGGCGGGCGGAUCACG
hsa_m5C_3846	chr1	109063257	109063258	-	ENST00000461096	C1875	m5C	C8	5'-GGGAGGCCAAGGCGGGCGGAUCACG-3'	((...(((......)))...))... ( -5.20)	bulge	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr1:109063241-109063265	TAF13	HGNC:11546	ENSG00000197780	GGGAGGCCAAGGCGGGCGGAUCACG
hsa_m5C_3847	chr1	109063252	109063253	-	ENST00000461096	C1880	m5C	C13	5'-GGGAGGCCAAGGCGGGCGGAUCACG-3'	((...(((......)))...))... ( -5.20)	loop	mRNA	293T;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr1:109063241-109063265	TAF13	HGNC:11546	ENSG00000197780	GGGAGGCCAAGGCGGGCGGAUCACG
hsa_m5C_3848	chr1	109063243	109063244	-	ENST00000461096	C1889	m5C	C22	5'-GGGAGGCCAAGGCGGGCGGAUCACG-3'	((...(((......)))...))... ( -5.20)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr1:109063241-109063265	TAF13	HGNC:11546	ENSG00000197780	GGGAGGCCAAGGCGGGCGGAUCACG
hsa_m5C_3849	chr1	109063295	109063296	-	ENST00000461096	C1837	m5C	C11	5'-GGGCCGGGCGCGGUGG-3'	..((((....)))).. ( -5.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	16	chr1:109063291-109063306	TAF13	HGNC:11546	ENSG00000197780	GGGCCGGGCGCGGUGG
hsa_m5C_3850	chr6	31687514	31687515	-	ENST00000461287	C1981	m5C	C10	5'-GGACGGCGGCAGCUGG-3'	...((((....)))). ( -5.20)	loop	lncRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr6:31687509-31687524	NA	NA	ENSG00000204422	GGACGGCGGCAGCUGG
hsa_m5C_3851	chr20	18481793	18481794	+	ENST00000462997	C1078	m5C	C17	5'-GGUUUGGUCCGGGCACCCUGUGG-3'	.........((((...))))... ( -2.40)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr20:18481778-18481800	POLR3F	HGNC:15763	ENSG00000132664	GGUUUGGUCCGGGCACCCUGUGG
hsa_m5C_3852	chrX	153929752	153929753	-	ENST00000464845	C1075	m5C	C6	5'-GGCCCCGGGGAAGGAGGCCCUGG-3'	((((((......)).)))).... (-10.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chrX:153929736-153929758	NAA10	HGNC:18704	ENSG00000102030	GGCCCCGGGGAAGGAGGCCCUGG
hsa_m5C_3853	chrX	153933952	153933953	-	ENST00000464845	C302	m5C	C9	5'-GGUAUGUCCUGGCCAAAAU^GGAAGAGG-3'	(((........)))............. ( -2.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	27	chrX:153932577-153932584;153933943-153933961	NAA10	HGNC:18704	ENSG00000102030	GGUAUGUCCUGGCCAAAAUGGAAGAGG
hsa_m5C_3854	chrX	153933947	153933948	-	ENST00000464845	C307	m5C	C14	5'-GGUAUGUCCUGGCCAAAAU^GGAAGAGG-3'	(((........)))............. ( -2.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	27	chrX:153932577-153932584;153933943-153933961	NAA10	HGNC:18704	ENSG00000102030	GGUAUGUCCUGGCCAAAAUGGAAGAGG
hsa_m5C_3855	chr15	68784436	68784437	-	ENST00000465139	C630	m5C	C13	5'-GGAUGCUGAGGGCUACGUGGAGGG-3'	....(((...)))........... ( -0.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	24	chr15:68784426-68784449	ANP32A	HGNC:13233	ENSG00000140350	GGAUGCUGAGGGCUACGUGGAGGG
hsa_m5C_3856	chr15	68787502	68787503	-	ENST00000465139	C381	m5C	C5	5'-GGGGCCUGGAAGUAUUGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr15:68787490-68787507	ANP32A	HGNC:13233	ENSG00000140350	GGGGCCUGGAAGUAUUGG
hsa_m5C_3857	chr7	102496857	102496858	-	ENST00000465829	C911	m5C	C8	5'-GGUCAAGCUGGGCAUGCAG^GGCCCAGGG-3'	.......((((((.......)))))).. (-11.00)	loop	mRNA	Muscle	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	28	chr7:102496611-102496619;102496847-102496865	RASA4B	HGNC:35202	ENSG00000170667	GGUCAAGCUGGGCAUGCAGGGCCCAGGG
hsa_m5C_3858	chr11	31369868	31369869	+	ENST00000465995	C10	m5C	C4	5'-GGCCGACAGCAGGCGAGGAGUGG-3'	.(((.......)))......... ( -4.60)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	23	chr11:31369866-31369888	DNAJC24	HGNC:26979	ENSG00000170946	GGCCGACAGCAGGCGAGGAGUGG
hsa_m5C_3859	chr11	31369867	31369868	+	ENST00000465995	C9	m5C	C3	5'-GGCCGACAGCAGGCGAGGAGUGG-3'	.(((.......)))......... ( -4.60)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	23	chr11:31369866-31369888	DNAJC24	HGNC:26979	ENSG00000170946	GGCCGACAGCAGGCGAGGAGUGG
hsa_m5C_3860	chr11	31431531	31431532	+	ENST00000465995	C1667	m5C	C5	5'-GGGGCCAGGCAUGG-3'	....(((....))) ( -1.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	14	chr11:31431528-31431541	DNAJC24	HGNC:26979	ENSG00000170946	GGGGCCAGGCAUGG
hsa_m5C_3861	chr11	31431532	31431533	+	ENST00000465995	C1668	m5C	C6	5'-GGGGCCAGGCAUGG-3'	....(((....))) ( -1.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	14	chr11:31431528-31431541	DNAJC24	HGNC:26979	ENSG00000170946	GGGGCCAGGCAUGG
hsa_m5C_3862	chr11	31431536	31431537	+	ENST00000465995	C1672	m5C	C10	5'-GGGGCCAGGCAUGG-3'	....(((....))) ( -1.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	14	chr11:31431528-31431541	DNAJC24	HGNC:26979	ENSG00000170946	GGGGCCAGGCAUGG
hsa_m5C_3863	chr7	23299363	23299364	+	ENST00000466681	C26	m5C	C10	5'-GGGGCCGGGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	12	chr7:23299355-23299366	MALSU1	HGNC:21721	ENSG00000156928	GGGGCCGGGCGG
hsa_m5C_3864	chr4	26861290	26861291	+	ENST00000467087	C451	m5C	C4	5'-GGGCGGCGGGCGACUGG-3'	......(((....))). ( -1.80)	loop	mRNA	HeLa	UBS-seq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database;38168991	31061524;38168991	17	chr4:26861288-26861304	STIM2	HGNC:19205	ENSG00000109689	GGGCGGCGGGCGACUGG
hsa_m5C_3865	chr20	63563459	63563460	-	ENST00000467148	C6254	m5C	C8	5'-GGCAGGCCGGCCGG-3'	(((......))).. ( -4.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr20:63563454-63563467	HELZ2	HGNC:30021	ENSG00000130589	GGCAGGCCGGCCGG
hsa_m5C_3866	chr20	63565912	63565913	-	ENST00000467148	C3801	m5C	C5	5'-GGGGCAGCGGGGAACUGGGAGGCUGCCCCAGAGCCAGUAGGG-3'	((((((((.............))))))))....((....)). (-18.80)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	42	chr20:63565876-63565917	HELZ2	HGNC:30021	ENSG00000130589	GGGGCAGCGGGGAACUGGGAGGCUGCCCCAGAGCCAGUAGGG
hsa_m5C_3867	chr20	63565894	63565895	-	ENST00000467148	C3819	m5C	C23	5'-GGGGCAGCGGGGAACUGGGAGGCUGCCCCAGAGCCAGUAGGG-3'	((((((((.............))))))))....((....)). (-18.80)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	42	chr20:63565876-63565917	HELZ2	HGNC:30021	ENSG00000130589	GGGGCAGCGGGGAACUGGGAGGCUGCCCCAGAGCCAGUAGGG
hsa_m5C_3868	chr20	63565891	63565892	-	ENST00000467148	C3822	m5C	C26	5'-GGGGCAGCGGGGAACUGGGAGGCUGCCCCAGAGCCAGUAGGG-3'	((((((((.............))))))))....((....)). (-18.80)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	42	chr20:63565876-63565917	HELZ2	HGNC:30021	ENSG00000130589	GGGGCAGCGGGGAACUGGGAGGCUGCCCCAGAGCCAGUAGGG
hsa_m5C_3869	chr20	63565888	63565889	-	ENST00000467148	C3825	m5C	C29	5'-GGGGCAGCGGGGAACUGGGAGGCUGCCCCAGAGCCAGUAGGG-3'	((((((((.............))))))))....((....)). (-18.80)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	42	chr20:63565876-63565917	HELZ2	HGNC:30021	ENSG00000130589	GGGGCAGCGGGGAACUGGGAGGCUGCCCCAGAGCCAGUAGGG
hsa_m5C_3870	chr5	891663	891664	-	ENST00000467963	C387	m5C	C4	5'-GGACGAUGAGGAAAGAAGGAAGCGAAAG^G-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr5:891287-891287;891640-891667	BRD9	HGNC:25818	ENSG00000028310	GGACGAUGAGGAAAGAAGGAAGCGAAAGG
hsa_m5C_3871	chr5	891644	891645	-	ENST00000467963	C406	m5C	C23	5'-GGACGAUGAGGAAAGAAGGAAGCGAAAG^G-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr5:891287-891287;891640-891667	BRD9	HGNC:25818	ENSG00000028310	GGACGAUGAGGAAAGAAGGAAGCGAAAGG
hsa_m5C_3872	chr1	220058781	220058782	-	ENST00000469520	C1439	m5C	C6	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	15	chr1:220058773-220058787	BPNT1	HGNC:1096	ENSG00000162813	GGAGGCCGAGGCAGG
hsa_m5C_3873	chr1	220058780	220058781	-	ENST00000469520	C1440	m5C	C7	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	15	chr1:220058773-220058787	BPNT1	HGNC:1096	ENSG00000162813	GGAGGCCGAGGCAGG
hsa_m5C_3874	chr1	220058775	220058776	-	ENST00000469520	C1445	m5C	C12	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;SRV-infected and -uninfected Jurkat	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	30009162;28418038;31358969	15	chr1:220058773-220058787	BPNT1	HGNC:1096	ENSG00000162813	GGAGGCCGAGGCAGG
hsa_m5C_3875	chr3	101682333	101682334	-	ENST00000469605	C526	m5C	C11	5'-GGAUGGGGUGCAGUGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	16	chr3:101682329-101682344	RPL24	HGNC:10325	ENSG00000114391	GGAUGGGGUGCAGUGG
hsa_m5C_3876	chr6	3259010	3259011	+	ENST00000473000	C51	m5C	C6	5'-GGGAGCCGUGGGGCGGCAUGGAGGGG-3'	....(((((...)))))......... ( -7.20)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	22344696	26	chr6:3259006-3259031	PSMG4	HGNC:21108	ENSG00000180822	GGGAGCCGUGGGGCGGCAUGGAGGGG
hsa_m5C_3877	chr7	139231643	139231644	+	ENST00000473989	C408	m5C	C18	5'-GGGCGGAGCCGCCGGCCCCGCGGG-3'	..((((.(((...))).))))... (-11.70)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr7:139231627-139231650	UBN2	HGNC:21931	ENSG00000157741	GGGCGGAGCCGCCGGCCCCGCGGG
hsa_m5C_3878	chr3	122729271	122729272	+	ENST00000474629	C6126	m5C	C9	5'-GGACAGCUCUGGCCAGGGCUCUGGG-3'	....((((((....))))))..... ( -6.00)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr3:122729264-122729288	PARP14	HGNC:29232	ENSG00000173193	GGACAGCUCUGGCCAGGGCUCUGGG
hsa_m5C_3879	chr3	61562152	61562153	+	ENST00000474889	C583	m5C	C4	5'-GGGCCGCCGAGCGCGGGGGGCCCGUGGAGCGGGCGAGCCGGGG-3'	.(((((((...((((((...)))))).....)))).))).... (-22.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	43	chr3:61562150-61562192	PTPRG	HGNC:9671	ENSG00000144724	GGGCCGCCGAGCGCGGGGGGCCCGUGGAGCGGGCGAGCCGGGG
hsa_m5C_3880	chr3	61562153	61562154	+	ENST00000474889	C584	m5C	C5	5'-GGGCCGCCGAGCGCGGGGGGCCCGUGGAGCGGGCGAGCCGGGG-3'	.(((((((...((((((...)))))).....)))).))).... (-22.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	43	chr3:61562150-61562192	PTPRG	HGNC:9671	ENSG00000144724	GGGCCGCCGAGCGCGGGGGGCCCGUGGAGCGGGCGAGCCGGGG
hsa_m5C_3881	chr3	61562155	61562156	+	ENST00000474889	C586	m5C	C7	5'-GGGCCGCCGAGCGCGGGGGGCCCGUGGAGCGGGCGAGCCGGGG-3'	.(((((((...((((((...)))))).....)))).))).... (-22.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	43	chr3:61562150-61562192	PTPRG	HGNC:9671	ENSG00000144724	GGGCCGCCGAGCGCGGGGGGCCCGUGGAGCGGGCGAGCCGGGG
hsa_m5C_3882	chr3	61562156	61562157	+	ENST00000474889	C587	m5C	C8	5'-GGGCCGCCGAGCGCGGGGGGCCCGUGGAGCGGGCGAGCCGGGG-3'	.(((((((...((((((...)))))).....)))).))).... (-22.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	43	chr3:61562150-61562192	PTPRG	HGNC:9671	ENSG00000144724	GGGCCGCCGAGCGCGGGGGGCCCGUGGAGCGGGCGAGCCGGGG
hsa_m5C_3883	chr3	61562160	61562161	+	ENST00000474889	C591	m5C	C12	5'-GGGCCGCCGAGCGCGGGGGGCCCGUGGAGCGGGCGAGCCGGGG-3'	.(((((((...((((((...)))))).....)))).))).... (-22.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr3:61562150-61562192	PTPRG	HGNC:9671	ENSG00000144724	GGGCCGCCGAGCGCGGGGGGCCCGUGGAGCGGGCGAGCCGGGG
hsa_m5C_3884	chr17	18782410	18782411	+	ENST00000476139	C1098	m5C	C13	5'-GGGAGGCUGAGGCAGG-3'	.....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	16	chr17:18782399-18782414	TVP23B	HGNC:20399	ENSG00000171928	GGGAGGCUGAGGCAGG
hsa_m5C_3885	chr17	75153830	75153831	-	ENST00000476258	C413	m5C	C9	5'-GGAUCGAUCAGGUCCGGCGG-3'	(((((.....)))))..... ( -6.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr17:75153820-75153839	JPT1	HGNC:14569	ENSG00000189159	GGAUCGAUCAGGUCCGGCGG
hsa_m5C_3886	chr3	64099543	64099544	+	ENST00000476308	C272	m5C	C10	5'-GGUCGGAAACGGCGG-3'	.((((....)))).. ( -4.90)	loop	lncRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	15	chr3:64099535-64099549	PRICKLE2-AS1	HGNC:40916	ENSG00000241572	GGUCGGAAACGGCGG
hsa_m5C_3887	chr3	179604616	179604617	-	ENST00000476781	C22	m5C	C6	5'-GGCUGCGGCCGGUUUGG-3'	(((....)))....... ( -5.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	17	chr3:179604606-179604622	MRPL47	HGNC:16652	ENSG00000136522	GGCUGCGGCCGGUUUGG
hsa_m5C_3888	chr9	99221648	99221649	-	ENST00000476832	C294	m5C	C15	5'-GGCCUGGGCUGGGGCGG-3'	.((((......)))).. ( -6.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr9:99221647-99221663	ALG2	HGNC:23159	ENSG00000119523	GGCCUGGGCUGGGGCGG
hsa_m5C_3889	chr7	74601489	74601490	+	ENST00000476977	C4767	m5C	C3	5'-GGCUGGCGGGUGCAGUGG-3'	.((((.......)))).. ( -3.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	18	chr7:74601488-74601505	GTF2IRD1	HGNC:4661	ENSG00000006704	GGCUGGCGGGUGCAGUGG
hsa_m5C_3890	chr7	74601416	74601417	+	ENST00000476977	C4694	m5C	C4	5'-GGGCAGAUGGGCCGGCUGAGG-3'	.(((......)))........ ( -4.30)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	21	chr7:74601414-74601434	GTF2IRD1	HGNC:4661	ENSG00000006704	GGGCAGAUGGGCCGGCUGAGG
hsa_m5C_3891	chr7	74601424	74601425	+	ENST00000476977	C4702	m5C	C12	5'-GGGCAGAUGGGCCGGCUGAGG-3'	.(((......)))........ ( -4.30)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	21	chr7:74601414-74601434	GTF2IRD1	HGNC:4661	ENSG00000006704	GGGCAGAUGGGCCGGCUGAGG
hsa_m5C_3892	chr7	74601425	74601426	+	ENST00000476977	C4703	m5C	C13	5'-GGGCAGAUGGGCCGGCUGAGG-3'	.(((......)))........ ( -4.30)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	21	chr7:74601414-74601434	GTF2IRD1	HGNC:4661	ENSG00000006704	GGGCAGAUGGGCCGGCUGAGG
hsa_m5C_3893	chr1	1440510	1440511	+	ENST00000476993	C2121	m5C	C13	5'-GGGAGCACUUCCCAGGGGCCGCAGGGACGACACUCUCCAGGG-3'	((((.....)))).....((...((((......))))..)). ( -9.50)	loop	mRNA	liver	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	42	chr1:1440499-1440540	VWA1	HGNC:30910	ENSG00000179403	GGGAGCACUUCCCAGGGGCCGCAGGGACGACACUCUCCAGGG
hsa_m5C_3894	chr19	50312554	50312555	-	ENST00000477616	C6129	m5C	C7	5'-GGGAUUCGGGGAGGGAGAGAGCGAGCUAAAGGG-3'	.((.((((.............))))))...... ( -2.20)	loop	mRNA	frontal_cortex	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	33	chr19:50312529-50312561	KCNC3	HGNC:6235	ENSG00000131398	GGGAUUCGGGGAGGGAGAGAGCGAGCUAAAGGG
hsa_m5C_3895	chr1	19215941	19215942	-	ENST00000477853	C6358	m5C	C6	5'-GGAGGCCAAGGCAGG-3'	....((....))... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr1:19215933-19215947	EMC1	HGNC:28957	ENSG00000127463	GGAGGCCAAGGCAGG
hsa_m5C_3896	chr1	19215940	19215941	-	ENST00000477853	C6359	m5C	C7	5'-GGAGGCCAAGGCAGG-3'	....((....))... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr1:19215933-19215947	EMC1	HGNC:28957	ENSG00000127463	GGAGGCCAAGGCAGG
hsa_m5C_3897	chr1	19217890	19217891	-	ENST00000477853	C4409	m5C	C13	5'-GGUAGAUUAUGGCAGAGAAGGAAGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	27	chr1:19217877-19217903	EMC1	HGNC:28957	ENSG00000127463	GGUAGAUUAUGGCAGAGAAGGAAGAGG
hsa_m5C_3898	chr17	38848356	38848357	-	ENST00000479035	C2209	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;heart,T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr17:38848348-38848362	RPL23	HGNC:10316	ENSG00000125691	GGAGGCUGAGGCAGG
hsa_m5C_3899	chr17	38848350	38848351	-	ENST00000479035	C2215	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;Testis,T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr17:38848348-38848362	RPL23	HGNC:10316	ENSG00000125691	GGAGGCUGAGGCAGG
hsa_m5C_3900	chr17	38853060	38853061	-	ENST00000479035	C69	m5C	C15	5'-GGAUUUCCUUGGGUCUUCCGGUAGG-3'	(((...((...))...)))...... ( -3.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chr17:38853051-38853075	RPL23	HGNC:10316	ENSG00000125691	GGAUUUCCUUGGGUCUUCCGGUAGG
hsa_m5C_3901	chr17	38853057	38853058	-	ENST00000479035	C72	m5C	C18	5'-GGAUUUCCUUGGGUCUUCCGGUAGG-3'	(((...((...))...)))...... ( -3.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chr17:38853051-38853075	RPL23	HGNC:10316	ENSG00000125691	GGAUUUCCUUGGGUCUUCCGGUAGG
hsa_m5C_3902	chr17	38853056	38853057	-	ENST00000479035	C73	m5C	C19	5'-GGAUUUCCUUGGGUCUUCCGGUAGG-3'	(((...((...))...)))...... ( -3.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chr17:38853051-38853075	RPL23	HGNC:10316	ENSG00000125691	GGAUUUCCUUGGGUCUUCCGGUAGG
hsa_m5C_3903	chr10	71362512	71362513	+	ENST00000479577	C1782	m5C	C5	5'-GGAGCUGGCUGAGGCCACGG-3'	.....((((....))))... ( -4.40)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr10:71362509-71362528	SLC29A3	HGNC:23096	ENSG00000198246	GGAGCUGGCUGAGGCCACGG
hsa_m5C_3904	chr1	15665160	15665161	+	ENST00000480945	C6784	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr1:15665156-15665170	DDI2	HGNC:24578	ENSG00000197312	GGAGGCUGAGGCAGG
hsa_m5C_3905	chr1	15665166	15665167	+	ENST00000480945	C6790	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr1:15665156-15665170	DDI2	HGNC:24578	ENSG00000197312	GGAGGCUGAGGCAGG
hsa_m5C_3906	chr9	134429162	134429163	+	ENST00000481739	C1143	m5C	C4	5'-GGACGGGAUCCUCCUGGCCACCGG-3'	((.(((((...))))).))..... ( -7.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr9:134429160-134429183	RXRA	HGNC:10477	ENSG00000186350	GGACGGGAUCCUCCUGGCCACCGG
hsa_m5C_3907	chr9	134326557	134326558	+	ENST00000481739	C104	m5C	C10	5'-GGGCCCGGGCCGGCCGCGCCGG-3'	.(((.(((.....))).))).. (-10.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr9:134326549-134326570	RXRA	HGNC:10477	ENSG00000186350	GGGCCCGGGCCGGCCGCGCCGG
hsa_m5C_3908	chr9	134326566	134326567	+	ENST00000481739	C113	m5C	C19	5'-GGGCCCGGGCCGGCCGCGCCGG-3'	.(((.(((.....))).))).. (-10.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr9:134326549-134326570	RXRA	HGNC:10477	ENSG00000186350	GGGCCCGGGCCGGCCGCGCCGG
hsa_m5C_3909	chr9	134326552	134326553	+	ENST00000481739	C99	m5C	C5	5'-GGGCCCGGGCCGGCCGCGCCGG-3'	.(((.(((.....))).))).. (-10.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr9:134326549-134326570	RXRA	HGNC:10477	ENSG00000186350	GGGCCCGGGCCGGCCGCGCCGG
hsa_m5C_3910	chr1	43981131	43981132	+	ENST00000481924	C299	m5C	C6	5'-GGGCCCACUGGGCGGGCCAGUGGCCGCCUGCGGG-3'	(((((((((((.....)))))))..))))..... (-17.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	34	chr1:43981127-43981160	B4GALT2	HGNC:925	ENSG00000117411	GGGCCCACUGGGCGGGCCAGUGGCCGCCUGCGGG
hsa_m5C_3911	chr3	64099543	64099544	+	ENST00000482609	C2918	m5C	C10	5'-GGUCGGAAACGGCGG-3'	.((((....)))).. ( -4.90)	loop	lncRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	15	chr3:64099535-64099549	NA	NA	ENSG00000241111	GGUCGGAAACGGCGG
hsa_m5C_3912	chr7	99480229	99480230	+	ENST00000483089	C898	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr7:99480219-99480233	ZNF789	HGNC:27801	ENSG00000198556	GGAGGCUGAGGCAGG
hsa_m5C_3913	chr17	28549938	28549939	-	ENST00000484980	C1864	m5C	C5	5'-GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG-3'	.(((((((((((....)))))))))))((.(((....))).)) (-23.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr17:28549901-28549943	UNC119	HGNC:12565	ENSG00000109103	GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG
hsa_m5C_3914	chr17	28549937	28549938	-	ENST00000484980	C1865	m5C	C6	5'-GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG-3'	.(((((((((((....)))))))))))((.(((....))).)) (-23.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr17:28549901-28549943	UNC119	HGNC:12565	ENSG00000109103	GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG
hsa_m5C_3915	chr17	28549923	28549924	-	ENST00000484980	C1879	m5C	C20	5'-GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG-3'	.(((((((((((....)))))))))))((.(((....))).)) (-23.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr17:28549901-28549943	UNC119	HGNC:12565	ENSG00000109103	GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG
hsa_m5C_3916	chr17	28549922	28549923	-	ENST00000484980	C1880	m5C	C21	5'-GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG-3'	.(((((((((((....)))))))))))((.(((....))).)) (-23.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr17:28549901-28549943	UNC119	HGNC:12565	ENSG00000109103	GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG
hsa_m5C_3917	chr17	28549918	28549919	-	ENST00000484980	C1884	m5C	C25	5'-GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG-3'	.(((((((((((....)))))))))))((.(((....))).)) (-23.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr17:28549901-28549943	UNC119	HGNC:12565	ENSG00000109103	GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG
hsa_m5C_3918	chr17	28549917	28549918	-	ENST00000484980	C1885	m5C	C26	5'-GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG-3'	.(((((((((((....)))))))))))((.(((....))).)) (-23.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr17:28549901-28549943	UNC119	HGNC:12565	ENSG00000109103	GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG
hsa_m5C_3919	chr17	28549908	28549909	-	ENST00000484980	C1894	m5C	C35	5'-GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG-3'	.(((((((((((....)))))))))))((.(((....))).)) (-23.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr17:28549901-28549943	UNC119	HGNC:12565	ENSG00000109103	GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG
hsa_m5C_3920	chr17	28549907	28549908	-	ENST00000484980	C1895	m5C	C36	5'-GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG-3'	.(((((((((((....)))))))))))((.(((....))).)) (-23.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr17:28549901-28549943	UNC119	HGNC:12565	ENSG00000109103	GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG
hsa_m5C_3921	chr17	28549905	28549906	-	ENST00000484980	C1897	m5C	C38	5'-GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG-3'	.(((((((((((....)))))))))))((.(((....))).)) (-23.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr17:28549901-28549943	UNC119	HGNC:12565	ENSG00000109103	GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG
hsa_m5C_3922	chr17	28549904	28549905	-	ENST00000484980	C1898	m5C	C39	5'-GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG-3'	.(((((((((((....)))))))))))((.(((....))).)) (-23.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	43	chr17:28549901-28549943	UNC119	HGNC:12565	ENSG00000109103	GGGGCCUGGAGGGUGAUUUCCAGGCCUCUGUGGGCCACCAGGG
hsa_m5C_3923	chrX	52067321	52067322	-	ENST00000485287	C729	m5C	C8	5'-GGCUCCCCGGCCCAGGAGG-3'	..((((........)))). ( -4.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chrX:52067311-52067329	MAGED4B	HGNC:22880	ENSG00000187243	GGCUCCCCGGCCCAGGAGG
hsa_m5C_3924	chr6	43007023	43007024	+	ENST00000485511	C544	m5C	C11	5'-GGAGGUGAAGCGGGCAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	18	chr6:43007014-43007031	PPP2R5D	HGNC:9312	ENSG00000112640	GGAGGUGAAGCGGGCAGG
hsa_m5C_3925	chr2	23385406	23385407	+	ENST00000486442	C229	m5C	C3	5'-GGCCGCCGCGGCUGCGGGGAGAGGGCGG-3'	..(((((....((....))....))))) ( -9.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	28	chr2:23385405-23385432	KLHL29	HGNC:29404	ENSG00000119771	GGCCGCCGCGGCUGCGGGGAGAGGGCGG
hsa_m5C_3926	chr2	23385407	23385408	+	ENST00000486442	C230	m5C	C4	5'-GGCCGCCGCGGCUGCGGGGAGAGGGCGG-3'	..(((((....((....))....))))) ( -9.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	28	chr2:23385405-23385432	KLHL29	HGNC:29404	ENSG00000119771	GGCCGCCGCGGCUGCGGGGAGAGGGCGG
hsa_m5C_3927	chr2	23385415	23385416	+	ENST00000486442	C238	m5C	C12	5'-GGCCGCCGCGGCUGCGGGGAGAGGGCGG-3'	..(((((....((....))....))))) ( -9.70)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	28	chr2:23385405-23385432	KLHL29	HGNC:29404	ENSG00000119771	GGCCGCCGCGGCUGCGGGGAGAGGGCGG
hsa_m5C_3928	chr2	23385418	23385419	+	ENST00000486442	C241	m5C	C15	5'-GGCCGCCGCGGCUGCGGGGAGAGGGCGG-3'	..(((((....((....))....))))) ( -9.70)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	28	chr2:23385405-23385432	KLHL29	HGNC:29404	ENSG00000119771	GGCCGCCGCGGCUGCGGGGAGAGGGCGG
hsa_m5C_3929	chr2	23385429	23385430	+	ENST00000486442	C252	m5C	C26	5'-GGCCGCCGCGGCUGCGGGGAGAGGGCGG-3'	..(((((....((....))....))))) ( -9.70)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	28	chr2:23385405-23385432	KLHL29	HGNC:29404	ENSG00000119771	GGCCGCCGCGGCUGCGGGGAGAGGGCGG
hsa_m5C_3930	chr2	73080149	73080150	-	ENST00000486777	C3253	m5C	C24	5'-GGACUCCAGAGGUUGGAGAAGGCCCUGAGG-3'	...(((.((.((((......))))))))). ( -7.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr2:73080144-73080173	RAB11FIP5	HGNC:24845	ENSG00000135631	GGACUCCAGAGGUUGGAGAAGGCCCUGAGG
hsa_m5C_3931	chr2	73080148	73080149	-	ENST00000486777	C3254	m5C	C25	5'-GGACUCCAGAGGUUGGAGAAGGCCCUGAGG-3'	...(((.((.((((......))))))))). ( -7.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr2:73080144-73080173	RAB11FIP5	HGNC:24845	ENSG00000135631	GGACUCCAGAGGUUGGAGAAGGCCCUGAGG
hsa_m5C_3932	chr3	42087184	42087185	+	ENST00000487159	C398	m5C	C11	5'-GGCAGUGGGGCCCCCGAUGGCAGUGGG-3'	(((......)))((((.......)))) ( -6.10)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr3:42087175-42087201	TRAK1	HGNC:29947	ENSG00000182606	GGCAGUGGGGCCCCCGAUGGCAGUGGG
hsa_m5C_3933	chr22	50526453	50526454	-	ENST00000487577	C1238	m5C	C8	5'-GGCUCAGCGGACACGCGGGGACUCAGG-3'	..(((.(((....))).)))....... ( -7.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr22:50526435-50526461	TYMP	HGNC:3148	ENSG00000025708	GGCUCAGCGGACACGCGGGGACUCAGG
hsa_m5C_3934	chr3	141945381	141945382	-	ENST00000489671	C8926	m5C	C7	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr3:141945374-141945388	TFDP2	HGNC:11751	ENSG00000114126	GGGAGGCCGAGGCGG
hsa_m5C_3935	chr3	141945380	141945381	-	ENST00000489671	C8927	m5C	C8	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	15	chr3:141945374-141945388	TFDP2	HGNC:11751	ENSG00000114126	GGGAGGCCGAGGCGG
hsa_m5C_3936	chr3	141945375	141945376	-	ENST00000489671	C8932	m5C	C13	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	15	chr3:141945374-141945388	TFDP2	HGNC:11751	ENSG00000114126	GGGAGGCCGAGGCGG
hsa_m5C_3937	chr1	156243126	156243127	+	ENST00000490491	C802	m5C	C7	5'-GGCUUUCAGGAGGCCUAUCGG-3'	((((((...))))))...... ( -6.00)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	21	chr1:156243121-156243141	PMF1-BGLAP	HGNC:42953	ENSG00000260238	GGCUUUCAGGAGGCCUAUCGG
hsa_m5C_3938	chr2	216500009	216500010	+	ENST00000491306	C225	m5C	C3	5'-GGCUGGCGGUGCCUGG-3'	(((.......)))... ( -4.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	16	chr2:216500008-216500023	RPL37A	HGNC:10348	ENSG00000197756	GGCUGGCGGUGCCUGG
hsa_m5C_3939	chr2	216500013	216500014	+	ENST00000491306	C229	m5C	C7	5'-GGCUGGCGGUGCCUGG-3'	(((.......)))... ( -4.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	16	chr2:216500008-216500023	RPL37A	HGNC:10348	ENSG00000197756	GGCUGGCGGUGCCUGG
hsa_m5C_3940	chr2	216500018	216500019	+	ENST00000491306	C234	m5C	C12	5'-GGCUGGCGGUGCCUGG-3'	(((.......)))... ( -4.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	16	chr2:216500008-216500023	RPL37A	HGNC:10348	ENSG00000197756	GGCUGGCGGUGCCUGG
hsa_m5C_3941	chr2	216499981	216499982	+	ENST00000491306	C197	m5C	C11	5'-GGGGAUCUGGCACUGUGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	18	chr2:216499972-216499989	RPL37A	HGNC:10348	ENSG00000197756	GGGGAUCUGGCACUGUGG
hsa_m5C_3942	chr20	62306272	62306273	+	ENST00000491935	C612	m5C	C5	5'-GGGGCGCUGGGGGCCAGCGGAAGCAGCGG-3'	....((((((...)))))).......... ( -9.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	29	chr20:62306269-62306297	ADRM1	HGNC:15759	ENSG00000130706	GGGGCGCUGGGGGCCAGCGGAAGCAGCGG
hsa_m5C_3943	chr20	62306274	62306275	+	ENST00000491935	C614	m5C	C7	5'-GGGGCGCUGGGGGCCAGCGGAAGCAGCGG-3'	....((((((...)))))).......... ( -9.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	29	chr20:62306269-62306297	ADRM1	HGNC:15759	ENSG00000130706	GGGGCGCUGGGGGCCAGCGGAAGCAGCGG
hsa_m5C_3944	chr19	36446383	36446384	-	ENST00000493391	C4062	m5C	C13	5'-GGAAGGCUGAGGCAGG-3'	.....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	16	chr19:36446381-36446396	ZNF566	HGNC:25919	ENSG00000186017	GGAAGGCUGAGGCAGG
hsa_m5C_3945	chr19	36446357	36446358	-	ENST00000493391	C4088	m5C	C6	5'-GGAGGCGGAGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	11	chr19:36446353-36446363	ZNF566	HGNC:25919	ENSG00000186017	GGAGGCGGAGG
hsa_m5C_3946	chr19	36447133	36447134	-	ENST00000493391	C3312	m5C	C8	5'-GGGGAGGCUGAGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	13	chr19:36447129-36447141	ZNF566	HGNC:25919	ENSG00000186017	GGGGAGGCUGAGG
hsa_m5C_3947	chr6	42887487	42887488	+	ENST00000493763	C2087	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr6:42887477-42887491	RPL7L1	HGNC:21370	ENSG00000146223	GGAGGCUGAGGCAGG
hsa_m5C_3948	chr8	143605334	143605335	-	ENST00000495276	C1217	m5C	C12	5'-GGUAACAGGCACGGCUGG-3'	.....(((......))). ( -2.60)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr8:143605329-143605346	PYCR3	HGNC:25846	ENSG00000104524	GGUAACAGGCACGGCUGG
hsa_m5C_3949	chr3	52049332	52049333	-	ENST00000495880	C2947	m5C	C5	5'-GGGCCUGGGGCAGGCAGAGG-3'	..(((((...)))))..... ( -6.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	20	chr3:52049318-52049337	DUSP7	HGNC:3073	ENSG00000164086	GGGCCUGGGGCAGGCAGAGG
hsa_m5C_3950	chr3	155942994	155942995	+	ENST00000496455	C7606	m5C	C7	5'-GGGAGGCCGAGGCGGGCGG-3'	.....(((......))).. ( -5.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	19	chr3:155942989-155943007	GMPS	HGNC:4378	ENSG00000163655	GGGAGGCCGAGGCGGGCGG
hsa_m5C_3951	chr3	155942995	155942996	+	ENST00000496455	C7607	m5C	C8	5'-GGGAGGCCGAGGCGGGCGG-3'	.....(((......))).. ( -5.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	19	chr3:155942989-155943007	GMPS	HGNC:4378	ENSG00000163655	GGGAGGCCGAGGCGGGCGG
hsa_m5C_3952	chr3	155941168	155941169	+	ENST00000496455	C5780	m5C	C7	5'-GGGAGGCCGAGGUGGG-3'	((....))........ ( -1.60)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	16	chr3:155941163-155941178	GMPS	HGNC:4378	ENSG00000163655	GGGAGGCCGAGGUGGG
hsa_m5C_3953	chr3	155941169	155941170	+	ENST00000496455	C5781	m5C	C8	5'-GGGAGGCCGAGGUGGG-3'	((....))........ ( -1.60)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	16	chr3:155941163-155941178	GMPS	HGNC:4378	ENSG00000163655	GGGAGGCCGAGGUGGG
hsa_m5C_3954	chr3	49533550	49533551	+	ENST00000496474	C3819	m5C	C17	5'-GGCAGUGCCGGGCGGCCCCCUGG-3'	(((...)))(((.....)))... ( -6.00)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr3:49533535-49533557	DAG1	HGNC:2666	ENSG00000173402	GGCAGUGCCGGGCGGCCCCCUGG
hsa_m5C_3955	chr19	33302117	33302118	-	ENST00000498907	C417	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	28418038	11	chr19:33302110-33302120	CEBPA	HGNC:1833	ENSG00000245848	GGCGGCGGCGG
hsa_m5C_3956	chr19	33302114	33302115	-	ENST00000498907	C420	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	11	chr19:33302110-33302120	CEBPA	HGNC:1833	ENSG00000245848	GGCGGCGGCGG
hsa_m5C_3957	chr19	33302111	33302112	-	ENST00000498907	C423	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr19:33302110-33302120	CEBPA	HGNC:1833	ENSG00000245848	GGCGGCGGCGG
hsa_m5C_3958	chr6	28589383	28589384	+	ENST00000499525	C511	m5C	C10	5'-GGUUGGUCCCAUGGUGUAAUGG-3'	........((((......)))) ( -2.90)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr6:28589375-28589396	ZBED9-AS1	HGNC:55596	ENSG00000246350	GGUUGGUCCCAUGGUGUAAUGG
hsa_m5C_3959	chr15	50364664	50364665	+	ENST00000499624	C8645	m5C	C11	5'-GGCUGGGGUGCAGUGG-3'	.((((.....)))).. ( -3.50)	loop	lncRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	16	chr15:50364655-50364670	GABPB1-AS1	HGNC:44157	ENSG00000244879	GGCUGGGGUGCAGUGG
hsa_m5C_3960	chr19	1396105	1396106	-	ENST00000501448	C362	m5C	C20	5'-GGGGCUGGUGGGGUGGAGUCAGGGUUCCCCG-3'	(((((((((........)))))....)))). ( -7.80)	loop	lncRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	31	chr19:1396095-1396125	NA	NA	ENSG00000248015	GGGGCUGGUGGGGUGGAGUCAGGGUUCCCCG
hsa_m5C_3961	chr1	179229362	179229363	-	ENST00000502732	C315	m5C	C32	5'-GGGCAGCAGGUGGGCCGCGUCGGGGAAGCUCCGGGG-3'	..((.((......)).)).((((((...)))))).. ( -9.60)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;HeLa,siControl;HeLa	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	36	chr1:179229359-179229394	ABL2	HGNC:77	ENSG00000143322	GGGCAGCAGGUGGGCCGCGUCGGGGAAGCUCCGGGG
hsa_m5C_3962	chr5	181243302	181243303	-	ENST00000502844	C68	m5C	C3	5'-GGCCCAAGGCUCGUGGGGAGGCAGG-3'	..((((.......))))........ ( -4.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr5:181243281-181243305	RACK1	HGNC:4399	ENSG00000204628	GGCCCAAGGCUCGUGGGGAGGCAGG
hsa_m5C_3963	chr5	181243301	181243302	-	ENST00000502844	C69	m5C	C4	5'-GGCCCAAGGCUCGUGGGGAGGCAGG-3'	..((((.......))))........ ( -4.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr5:181243281-181243305	RACK1	HGNC:4399	ENSG00000204628	GGCCCAAGGCUCGUGGGGAGGCAGG
hsa_m5C_3964	chr5	181243300	181243301	-	ENST00000502844	C70	m5C	C5	5'-GGCCCAAGGCUCGUGGGGAGGCAGG-3'	..((((.......))))........ ( -4.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	25	chr5:181243281-181243305	RACK1	HGNC:4399	ENSG00000204628	GGCCCAAGGCUCGUGGGGAGGCAGG
hsa_m5C_3965	chr5	181239489	181239490	-	ENST00000502844	C1230	m5C	C4	5'-GGUCAAG^GUAUGGAACCUGG-3'	.....((((.....)))).. ( -3.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr5:181239165-181239177;181239487-181239493	RACK1	HGNC:4399	ENSG00000204628	GGUCAAGGUAUGGAACCUGG
hsa_m5C_3966	chr3	45225827	45225828	-	ENST00000503771	C460	m5C	C9	5'-GGAGGAGGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	11	chr3:45225826-45225836	TMEM158	HGNC:30293	ENSG00000249992	GGAGGAGGCGG
hsa_m5C_3967	chr3	45225818	45225819	-	ENST00000503771	C469	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	11	chr3:45225814-45225824	TMEM158	HGNC:30293	ENSG00000249992	GGCGGCGGCGG
hsa_m5C_3968	chr3	45225815	45225816	-	ENST00000503771	C472	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	11	chr3:45225814-45225824	TMEM158	HGNC:30293	ENSG00000249992	GGCGGCGGCGG
hsa_m5C_3969	chr3	45225632	45225633	-	ENST00000503771	C655	m5C	C7	5'-GGCUGGCGGCGG-3'	.(((...))).. ( -1.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	12	chr3:45225628-45225639	TMEM158	HGNC:30293	ENSG00000249992	GGCUGGCGGCGG
hsa_m5C_3970	chr3	45225629	45225630	-	ENST00000503771	C658	m5C	C10	5'-GGCUGGCGGCGG-3'	.(((...))).. ( -1.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	12	chr3:45225628-45225639	TMEM158	HGNC:30293	ENSG00000249992	GGCUGGCGGCGG
hsa_m5C_3971	chr22	31348281	31348282	+	ENST00000504184	C1506	m5C	C7	5'-GGAGGUCGAGGCAGG-3'	NA	loop	lncRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr22:31348276-31348290	LINC01521	HGNC:26029	ENSG00000213888	GGAGGUCGAGGCAGG
hsa_m5C_3972	chr22	31348286	31348287	+	ENST00000504184	C1511	m5C	C12	5'-GGAGGUCGAGGCAGG-3'	NA	loop	lncRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr22:31348276-31348290	LINC01521	HGNC:26029	ENSG00000213888	GGAGGUCGAGGCAGG
hsa_m5C_3973	chr8	143598791	143598792	+	ENST00000504548	C962	m5C	C14	5'-GGUCAUCGGGCGGCUGCCGG-3'	........(((....))).. ( -4.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr8:143598779-143598798	TIGD5	HGNC:18336	ENSG00000179886	GGUCAUCGGGCGGCUGCCGG
hsa_m5C_3974	chr1	1629410	1629411	+	ENST00000504599	C2777	m5C	C28	5'-G^GGAGCGGCAGGCGGGCGGGGGCGCGGCCCCGGG-3'	(((.((.((..((........)))).)))))... (-13.50)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	34	chr1:1629311-1629311;1629385-1629417	MIB2	HGNC:30577	ENSG00000197530	GGGAGCGGCAGGCGGGCGGGGGCGCGGCCCCGGG
hsa_m5C_3975	chr1	1629411	1629412	+	ENST00000504599	C2778	m5C	C29	5'-G^GGAGCGGCAGGCGGGCGGGGGCGCGGCCCCGGG-3'	(((.((.((..((........)))).)))))... (-13.50)	bulge	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	34	chr1:1629311-1629311;1629385-1629417	MIB2	HGNC:30577	ENSG00000197530	GGGAGCGGCAGGCGGGCGGGGGCGCGGCCCCGGG
hsa_m5C_3976	chr1	1629412	1629413	+	ENST00000504599	C2779	m5C	C30	5'-G^GGAGCGGCAGGCGGGCGGGGGCGCGGCCCCGGG-3'	(((.((.((..((........)))).)))))... (-13.50)	bulge	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	34	chr1:1629311-1629311;1629385-1629417	MIB2	HGNC:30577	ENSG00000197530	GGGAGCGGCAGGCGGGCGGGGGCGCGGCCCCGGG
hsa_m5C_3977	chr1	1629413	1629414	+	ENST00000504599	C2780	m5C	C31	5'-G^GGAGCGGCAGGCGGGCGGGGGCGCGGCCCCGGG-3'	(((.((.((..((........)))).)))))... (-13.50)	bulge	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	34	chr1:1629311-1629311;1629385-1629417	MIB2	HGNC:30577	ENSG00000197530	GGGAGCGGCAGGCGGGCGGGGGCGCGGCCCCGGG
hsa_m5C_3978	chr5	131391091	131391092	+	ENST00000505065	C824	m5C	C20	5'-GGAUACGAAGGCGGGAUAGCCCUGG-3'	.........(((......))).... ( -4.60)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr5:131391073-131391097	CDC42SE2	HGNC:18547	ENSG00000158985	GGAUACGAAGGCGGGAUAGCCCUGG
hsa_m5C_3979	chr4	6597243	6597244	+	ENST00000505907	C1185	m5C	C18	5'-GGCCGGCCCCCCGUGGGCAUCUGG-3'	.(((.((.....)).)))...... ( -7.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr4:6597227-6597250	MAN2B2	HGNC:29623	ENSG00000013288	GGCCGGCCCCCCGUGGGCAUCUGG
hsa_m5C_3980	chr5	146203624	146203625	+	ENST00000506502	C76	m5C	C10	5'-GGCCCCGGCCGGGG-3'	..((((....)))) ( -6.00)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr5:146203616-146203629	NA	NA	ENSG00000275740	GGCCCCGGCCGGGG
hsa_m5C_3981	chr5	131165228	131165229	-	ENST00000506908	C113	m5C	C3	5'-GGCCGCCGCGCGGGAGAGAGGCCGAGAUGG-3'	((((.((.....)).....))))....... ( -7.30)	bulge	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	30	chr5:131165202-131165231	HINT1	HGNC:4912	ENSG00000169567	GGCCGCCGCGCGGGAGAGAGGCCGAGAUGG
hsa_m5C_3982	chr5	131165227	131165228	-	ENST00000506908	C114	m5C	C4	5'-GGCCGCCGCGCGGGAGAGAGGCCGAGAUGG-3'	((((.((.....)).....))))....... ( -7.30)	bulge	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	30	chr5:131165202-131165231	HINT1	HGNC:4912	ENSG00000169567	GGCCGCCGCGCGGGAGAGAGGCCGAGAUGG
hsa_m5C_3983	chr5	131165225	131165226	-	ENST00000506908	C116	m5C	C6	5'-GGCCGCCGCGCGGGAGAGAGGCCGAGAUGG-3'	((((.((.....)).....))))....... ( -7.30)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	30	chr5:131165202-131165231	HINT1	HGNC:4912	ENSG00000169567	GGCCGCCGCGCGGGAGAGAGGCCGAGAUGG
hsa_m5C_3984	chr5	131165224	131165225	-	ENST00000506908	C117	m5C	C7	5'-GGCCGCCGCGCGGGAGAGAGGCCGAGAUGG-3'	((((.((.....)).....))))....... ( -7.30)	bulge	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	30	chr5:131165202-131165231	HINT1	HGNC:4912	ENSG00000169567	GGCCGCCGCGCGGGAGAGAGGCCGAGAUGG
hsa_m5C_3985	chr5	131165208	131165209	-	ENST00000506908	C133	m5C	C23	5'-GGCCGCCGCGCGGGAGAGAGGCCGAGAUGG-3'	((((.((.....)).....))))....... ( -7.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr5:131165202-131165231	HINT1	HGNC:4912	ENSG00000169567	GGCCGCCGCGCGGGAGAGAGGCCGAGAUGG
hsa_m5C_3986	chr5	44808966	44808967	+	ENST00000507110	C21	m5C	C3	5'-GGCGGCGGCCAGG-3'	(((....)))... ( -5.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	13	chr5:44808965-44808977	MRPS30	HGNC:8769	ENSG00000112996	GGCGGCGGCCAGG
hsa_m5C_3987	chr5	44808969	44808970	+	ENST00000507110	C24	m5C	C6	5'-GGCGGCGGCCAGG-3'	(((....)))... ( -5.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	13	chr5:44808965-44808977	MRPS30	HGNC:8769	ENSG00000112996	GGCGGCGGCCAGG
hsa_m5C_3988	chr4	7192878	7192879	+	ENST00000507866	C342	m5C	C13	5'-GGCGCGCGGAGCCCGGUGGCGG-3'	.((.(((........))))).. ( -5.30)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins	m5C-RIP-seq:(Medium)	pqsfinder&qgrs:(Low)	RMVar database	31061524	22	chr4:7192867-7192888	SORCS2	HGNC:16698	ENSG00000184985	GGCGCGCGGAGCCCGGUGGCGG
hsa_m5C_3989	chr4	7192879	7192880	+	ENST00000507866	C343	m5C	C14	5'-GGCGCGCGGAGCCCGGUGGCGG-3'	.((.(((........))))).. ( -5.30)	loop	mRNA	HeLa	m5C-RIP-seq:(Medium)	pqsfinder&qgrs:(Low)	RMBase database	NA	22	chr4:7192867-7192888	SORCS2	HGNC:16698	ENSG00000184985	GGCGCGCGGAGCCCGGUGGCGG
hsa_m5C_3990	chr12	54000577	54000578	+	ENST00000508190	C488	m5C	C7	5'-GGACUGCGGCCCAGGGGAGGG-3'	.........(((......))) ( -2.90)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	21	chr12:54000572-54000592	HOXC9	HGNC:5130	ENSG00000180806	GGACUGCGGCCCAGGGGAGGG
hsa_m5C_3991	chr12	54000580	54000581	+	ENST00000508190	C491	m5C	C10	5'-GGACUGCGGCCCAGGGGAGGG-3'	.........(((......))) ( -2.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	21	chr12:54000572-54000592	HOXC9	HGNC:5130	ENSG00000180806	GGACUGCGGCCCAGGGGAGGG
hsa_m5C_3992	chr12	54000581	54000582	+	ENST00000508190	C492	m5C	C11	5'-GGACUGCGGCCCAGGGGAGGG-3'	.........(((......))) ( -2.90)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	21	chr12:54000572-54000592	HOXC9	HGNC:5130	ENSG00000180806	GGACUGCGGCCCAGGGGAGGG
hsa_m5C_3993	chr12	54000582	54000583	+	ENST00000508190	C493	m5C	C12	5'-GGACUGCGGCCCAGGGGAGGG-3'	.........(((......))) ( -2.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	21	chr12:54000572-54000592	HOXC9	HGNC:5130	ENSG00000180806	GGACUGCGGCCCAGGGGAGGG
hsa_m5C_3994	chr5	176810657	176810658	+	ENST00000509580	C140	m5C	C13	5'-GGGCCCCGGGGGCGCCCCGAGCUGGGGCUCCGGG-3'	....((((((...(((((.....))))))))))) (-19.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	34	chr5:176810646-176810679	UNC5A	HGNC:12567	ENSG00000113763	GGGCCCCGGGGGCGCCCCGAGCUGGGGCUCCGGG
hsa_m5C_3995	chr18	59139872	59139873	+	ENST00000509791	C8	m5C	C7	5'-GGUGGGCGGGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	11	chr18:59139867-59139877	SEC11C	HGNC:23400	ENSG00000166562	GGUGGGCGGGG
hsa_m5C_3996	chr4	1241719	1241720	-	ENST00000510568	C204	m5C	C28	5'-GCGGCCUCGGGCCUGGCACUGCAACCUCAGGG-3'	((((((...))))..)).(((......))).. ( -7.80)	loop	mRNA	SNB19;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;38168991	28418038;38168991	32	chr4:1241716-1241747	CTBP1	HGNC:2494	ENSG00000159692	GCGGCCUCGGGCCUGGCACUGCAACCUCAGGG
hsa_m5C_3997	chr5	176908590	176908591	-	ENST00000511320	C1918	m5C	C10	5'-GGAGAUGGACCUGAAGGGAGUGG-3'	.........(((...)))..... ( -0.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr5:176908578-176908600	UIMC1	HGNC:30298	ENSG00000087206	GGAGAUGGACCUGAAGGGAGUGG
hsa_m5C_3998	chr5	176908589	176908590	-	ENST00000511320	C1919	m5C	C11	5'-GGAGAUGGACCUGAAGGGAGUGG-3'	.........(((...)))..... ( -0.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr5:176908578-176908600	UIMC1	HGNC:30298	ENSG00000087206	GGAGAUGGACCUGAAGGGAGUGG
hsa_m5C_3999	chr4	152975111	152975112	+	ENST00000511601	C2038	m5C	C5	5'-GGGGCCAGGAGG-3'	NA	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	12	chr4:152975108-152975119	FHDC1	HGNC:29363	ENSG00000137460	GGGGCCAGGAGG
hsa_m5C_4000	chr4	152975112	152975113	+	ENST00000511601	C2039	m5C	C6	5'-GGGGCCAGGAGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	12	chr4:152975108-152975119	FHDC1	HGNC:29363	ENSG00000137460	GGGGCCAGGAGG
hsa_m5C_4001	chr5	175967946	175967947	-	ENST00000513482	C334	m5C	C11	5'-GGAGAAGGACCGGUUG^G-3'	((.......))...... ( -0.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr5:175967267-175967267;175967942-175967957	THOC3	HGNC:19072	ENSG00000051596	GGAGAAGGACCGGUUGG
hsa_m5C_4002	chr4	105708894	105708895	+	ENST00000515279	C112	m5C	C17	5'-GGAGGCGAGUGGUCUGCGG-3'	..((((.....)))).... ( -3.50)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	19	chr4:105708879-105708897	GSTCD	HGNC:25806	ENSG00000138780	GGAGGCGAGUGGUCUGCGG
hsa_m5C_4003	chr7	97006206	97006207	+	ENST00000518156	C655	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	11	chr7:97006205-97006215	DLX6	HGNC:2919	ENSG00000006377	GGCGGCGGCGG
hsa_m5C_4004	chr7	97006209	97006210	+	ENST00000518156	C658	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	11	chr7:97006205-97006215	DLX6	HGNC:2919	ENSG00000006377	GGCGGCGGCGG
hsa_m5C_4005	chr7	97006212	97006213	+	ENST00000518156	C661	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	11	chr7:97006205-97006215	DLX6	HGNC:2919	ENSG00000006377	GGCGGCGGCGG
hsa_m5C_4006	chr5	154792681	154792682	+	ENST00000518297	C1006	m5C	C5	5'-GGAACAGGAGAAAGGAGAAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	21	chr5:154792678-154792698	LARP1	HGNC:29531	ENSG00000155506	GGAACAGGAGAAAGGAGAAGG
hsa_m5C_4007	chr5	154755959	154755960	+	ENST00000518297	C584	m5C	C9	5'-GGAGGGCACCGGGCAGCAGG-3'	.....((........))... ( -0.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr5:154755952-154755971	LARP1	HGNC:29531	ENSG00000155506	GGAGGGCACCGGGCAGCAGG
hsa_m5C_4008	chr5	154755652	154755653	+	ENST00000518297	C277	m5C	C11	5'-GGGACUGGGGCCCAGCGCCCCGGAGGAAGG-3'	....(((((((.....)))))))....... (-13.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	30	chr5:154755643-154755672	LARP1	HGNC:29531	ENSG00000155506	GGGACUGGGGCCCAGCGCCCCGGAGGAAGG
hsa_m5C_4009	chr5	154755653	154755654	+	ENST00000518297	C278	m5C	C12	5'-GGGACUGGGGCCCAGCGCCCCGGAGGAAGG-3'	....(((((((.....)))))))....... (-13.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	30	chr5:154755643-154755672	LARP1	HGNC:29531	ENSG00000155506	GGGACUGGGGCCCAGCGCCCCGGAGGAAGG
hsa_m5C_4010	chr5	154755495	154755496	+	ENST00000518297	C120	m5C	C29	5'-GGGGUGGGGGCGUCUUGCGAGGAACGGGCGGGGGGGG-3'	............((((((.........)))))).... ( -5.20)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	37	chr5:154755468-154755504	LARP1	HGNC:29531	ENSG00000155506	GGGGUGGGGGCGUCUUGCGAGGAACGGGCGGGGGGGG
hsa_m5C_4011	chr8	123182968	123182969	+	ENST00000518448	C2127	m5C	C7	5'-GGCUGGCCACGGACGCCCUCUUGG-3'	....(((.......)))....... ( -2.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr8:123182963-123182986	FAM83A	HGNC:28210	ENSG00000147689	GGCUGGCCACGGACGCCCUCUUGG
hsa_m5C_4012	chr8	123208462	123208463	+	ENST00000518448	C4094	m5C	C5	5'-GGGGCCAGGACUGG-3'	....(((....))) ( -0.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038;30872485	14	chr8:123208459-123208472	FAM83A	HGNC:28210	ENSG00000147689	GGGGCCAGGACUGG
hsa_m5C_4013	chr8	123208463	123208464	+	ENST00000518448	C4095	m5C	C6	5'-GGGGCCAGGACUGG-3'	....(((....))) ( -0.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038;30872485	14	chr8:123208459-123208472	FAM83A	HGNC:28210	ENSG00000147689	GGGGCCAGGACUGG
hsa_m5C_4014	chr12	6873277	6873278	-	ENST00000519357	C59	m5C	C4	5'-GGCCCGGCGACCUCCAGGGCUGGG-3'	..((((((..........)))))) ( -9.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr12:6873258-6873281	SPSB2	HGNC:29522	ENSG00000111671	GGCCCGGCGACCUCCAGGGCUGGG
hsa_m5C_4015	chr16	69119815	69119816	-	ENST00000519520	C997	m5C	C12	5'-GGCCAGUUGGCCUGGGCCCAGG-3'	((((....)))).......... ( -7.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr16:69119806-69119827	DERPC	HGNC:54084	ENSG00000286140	GGCCAGUUGGCCUGGGCCCAGG
hsa_m5C_4016	chr8	141128648	141128649	+	ENST00000519811	C61	m5C	C26	5'-GGCGCGGCUGGUCCCCAGGGGUCUGCGGG-3'	..(((((((((...))))....))))).. ( -9.20)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr8:141128624-141128652	DENND3	HGNC:29134	ENSG00000105339	GGCGCGGCUGGUCCCCAGGGGUCUGCGGG
hsa_m5C_4017	chr8	23574364	23574365	+	ENST00000519973	C3574	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Testis	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	NA	15	chr8:23574360-23574374	SLC25A37	HGNC:29786	ENSG00000147454	GGAGGCUGAGGCAGG
hsa_m5C_4018	chr8	102412380	102412381	-	ENST00000520539	C320	m5C	C6	5'-GGAGGCGGCGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	11	chr8:102412376-102412386	UBR5	HGNC:16806	ENSG00000104517	GGAGGCGGCGG
hsa_m5C_4019	chr8	23071591	23071592	-	ENST00000520840	C269	m5C	C13	5'-GGACCUGGGGUCCGG-3'	(((((...))))).. ( -7.50)	loop	lncRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr8:23071590-23071604	CHILL1	HGNC:55933	ENSG00000253616	GGACCUGGGGUCCGG
hsa_m5C_4020	chr8	70607624	70607625	-	ENST00000521425	C154	m5C	C4	5'-GGGCCGGGGAAGGCCGAGG-3'	.((((......)))).... ( -8.50)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr8:70607610-70607628	TRAM1	HGNC:20568	ENSG00000067167	GGGCCGGGGAAGGCCGAGG
hsa_m5C_4021	chr8	70607623	70607624	-	ENST00000521425	C155	m5C	C5	5'-GGGCCGGGGAAGGCCGAGG-3'	.((((......)))).... ( -8.50)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr8:70607610-70607628	TRAM1	HGNC:20568	ENSG00000067167	GGGCCGGGGAAGGCCGAGG
hsa_m5C_4022	chr8	98045373	98045374	-	ENST00000521726	C781	m5C	C3	5'-GGCAGGAAGAUGGUGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	16	chr8:98045361-98045376	RPL30	HGNC:10333	ENSG00000156482	GGCAGGAAGAUGGUGG
hsa_m5C_4023	chr8	26656751	26656752	+	ENST00000521913	C3375	m5C	C7	5'-GGGACCCUGGCCAAGUGCAGGAAUGG-3'	.....((((........))))..... ( -5.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr8:26656746-26656771	DPYSL2	HGNC:3014	ENSG00000092964	GGGACCCUGGCCAAGUGCAGGAAUGG
hsa_m5C_4024	chr8	26656756	26656757	+	ENST00000521913	C3380	m5C	C12	5'-GGGACCCUGGCCAAGUGCAGGAAUGG-3'	.....((((........))))..... ( -5.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr8:26656746-26656771	DPYSL2	HGNC:3014	ENSG00000092964	GGGACCCUGGCCAAGUGCAGGAAUGG
hsa_m5C_4025	chr5	157690222	157690223	-	ENST00000522076	C44	m5C	C13	5'-GGACUGCAGGCUCGGCGCGG-3'	...((((..((...)))))) ( -2.60)	loop	lncRNA	Testis	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	NA	20	chr5:157690216-157690235	NA	NA	ENSG00000290601	GGACUGCAGGCUCGGCGCGG
hsa_m5C_4026	chr5	180071686	180071687	-	ENST00000522208	C35	m5C	C22	5'-GGGACGAUGAGCUGCGCGGGGCGGGCGGG-3'	...........((((.((...)).)))). ( -7.50)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31061524	29	chr5:180071680-180071708	RNF130	HGNC:18280	ENSG00000113269	GGGACGAUGAGCUGCGCGGGGCGGGCGGG
hsa_m5C_4027	chr5	180071682	180071683	-	ENST00000522208	C39	m5C	C26	5'-GGGACGAUGAGCUGCGCGGGGCGGGCGGG-3'	...........((((.((...)).)))). ( -7.50)	loop	mRNA	HeLa,rip antibody: ALYREF;Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	29	chr5:180071680-180071708	RNF130	HGNC:18280	ENSG00000113269	GGGACGAUGAGCUGCGCGGGGCGGGCGGG
hsa_m5C_4028	chr8	143275959	143275960	+	ENST00000522452	C2454	m5C	C6	5'-GGGGGCGGGCGGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	13	chr8:143275955-143275967	NA	NA	ENSG00000264668	GGGGGCGGGCGGG
hsa_m5C_4029	chr8	143275963	143275964	+	ENST00000522452	C2458	m5C	C10	5'-GGGGGCGGGCGGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	13	chr8:143275955-143275967	NA	NA	ENSG00000264668	GGGGGCGGGCGGG
hsa_m5C_4030	chr8	142700506	142700507	+	ENST00000522591	C36	m5C	C28	5'-GGGGAGGGGGCGCCGCGCGCUGACCCUCCCUGGGCACCGCUGGGG-3'	(((((((((((((...)))))..)))))))).....((....)). (-24.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr8:142700480-142700524	LY6K	HGNC:24225	ENSG00000160886	GGGGAGGGGGCGCCGCGCGCUGACCCUCCCUGGGCACCGCUGGGG
hsa_m5C_4031	chr8	142700507	142700508	+	ENST00000522591	C37	m5C	C29	5'-GGGGAGGGGGCGCCGCGCGCUGACCCUCCCUGGGCACCGCUGGGG-3'	(((((((((((((...)))))..)))))))).....((....)). (-24.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr8:142700480-142700524	LY6K	HGNC:24225	ENSG00000160886	GGGGAGGGGGCGCCGCGCGCUGACCCUCCCUGGGCACCGCUGGGG
hsa_m5C_4032	chr8	41542147	41542148	+	ENST00000523277	C991	m5C	C7	5'-GGGAGGCCGAGGCGGGCGGAUCAUG-3'	((...(((......)))...))... ( -6.20)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	31358969	25	chr8:41542142-41542166	GINS4	HGNC:28226	ENSG00000147536	GGGAGGCCGAGGCGGGCGGAUCAUG
hsa_m5C_4033	chr8	41542148	41542149	+	ENST00000523277	C992	m5C	C8	5'-GGGAGGCCGAGGCGGGCGGAUCAUG-3'	((...(((......)))...))... ( -6.20)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	25	chr8:41542142-41542166	GINS4	HGNC:28226	ENSG00000147536	GGGAGGCCGAGGCGGGCGGAUCAUG
hsa_m5C_4034	chrX	46499415	46499416	-	ENST00000523374	C2384	m5C	C6	5'-GGAGGCUGAGGUGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969;28418038	14	chrX:46499408-46499421	ZNF674	HGNC:17625	ENSG00000251192	GGAGGCUGAGGUGG
hsa_m5C_4035	chr8	29068180	29068181	-	ENST00000524189	C7840	m5C	C8	5'-GGAAGGCCCCAGGAGUGG-3'	........(((....))) ( -1.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr8:29068171-29068188	KIF13B	HGNC:14405	ENSG00000197892	GGAAGGCCCCAGGAGUGG
hsa_m5C_4036	chr5	177524401	177524402	-	ENST00000524677	C2447	m5C	C16	5'-GGCUGGAGAGGGGAGCCGGGGGAGCCGG-3'	((((.....((....)).....)))).. ( -9.20)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	28	chr5:177524390-177524417	FAM193B	HGNC:25524	ENSG00000146067	GGCUGGAGAGGGGAGCCGGGGGAGCCGG
hsa_m5C_4037	chr5	177524400	177524401	-	ENST00000524677	C2448	m5C	C17	5'-GGCUGGAGAGGGGAGCCGGGGGAGCCGG-3'	((((.....((....)).....)))).. ( -9.20)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	28	chr5:177524390-177524417	FAM193B	HGNC:25524	ENSG00000146067	GGCUGGAGAGGGGAGCCGGGGGAGCCGG
hsa_m5C_4038	chr5	177554403	177554404	-	ENST00000524677	C183	m5C	C20	5'-GGGCAGGCGCGAGCGGGCUCGGGCCGCGGG-3'	..((.(((.((((....)))).)))))... (-14.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr5:177554394-177554423	FAM193B	HGNC:25524	ENSG00000146067	GGGCAGGCGCGAGCGGGCUCGGGCCGCGGG
hsa_m5C_4039	chr5	177554399	177554400	-	ENST00000524677	C187	m5C	C24	5'-GGGCAGGCGCGAGCGGGCUCGGGCCGCGGG-3'	..((.(((.((((....)))).)))))... (-14.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr5:177554394-177554423	FAM193B	HGNC:25524	ENSG00000146067	GGGCAGGCGCGAGCGGGCUCGGGCCGCGGG
hsa_m5C_4040	chr5	177554398	177554399	-	ENST00000524677	C188	m5C	C25	5'-GGGCAGGCGCGAGCGGGCUCGGGCCGCGGG-3'	..((.(((.((((....)))).)))))... (-14.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr5:177554394-177554423	FAM193B	HGNC:25524	ENSG00000146067	GGGCAGGCGCGAGCGGGCUCGGGCCGCGGG
hsa_m5C_4041	chr11	65538034	65538035	+	ENST00000524944	C2133	m5C	C14	5'-GGGAAGCUGAGGGCUCCUGGGAACAGGG-3'	....((((...))))((((....)))). ( -7.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	28	chr11:65538022-65538049	SCYL1	HGNC:14372	ENSG00000142186	GGGAAGCUGAGGGCUCCUGGGAACAGGG
hsa_m5C_4042	chr11	831583	831584	+	ENST00000525077	C1764	m5C	C21	5'-GGGACGCCUGCGAGGCCAGGCGGGCGGG-3'	....(((((((........))))))).. (-14.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	28	chr11:831564-831591	CRACR2B	HGNC:28703	ENSG00000177685	GGGACGCCUGCGAGGCCAGGCGGGCGGG
hsa_m5C_4043	chr11	77637778	77637779	-	ENST00000525428	C16	m5C	C8	5'-GGGCGGGCGGUGUGG-3'	NA	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMBase database;RMVar database	28418038	15	chr11:77637772-77637786	CLNS1A	HGNC:2080	ENSG00000074201	GGGCGGGCGGUGUGG
hsa_m5C_4044	chr19	10358018	10358019	-	ENST00000525621	C2673	m5C	C10	5'-GGGCCUGGGCGCCCUCUCCAGGGAGG^AGCGGG-3'	.........((((((((....))))).))).. (-11.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	32	chr19:10357913-10357918;10358003-10358028	TYK2	HGNC:12440	ENSG00000105397	GGGCCUGGGCGCCCUCUCCAGGGAGGAGCGGG
hsa_m5C_4045	chr11	65661739	65661740	-	ENST00000525693	C345	m5C	C9	5'-GGAAAGGACUGCCGGGAUGG-3'	.....((....))....... ( -0.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr11:65661729-65661748	RELA	HGNC:9955	ENSG00000173039	GGAAAGGACUGCCGGGAUGG
hsa_m5C_4046	chr11	65654474	65654475	-	ENST00000525693	C2309	m5C	C6	5'-GGGGGCCCCGGGG-3'	(((...))).... ( -2.90)	loop	mRNA	293T;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	13	chr11:65654468-65654480	RELA	HGNC:9955	ENSG00000173039	GGGGGCCCCGGGG
hsa_m5C_4047	chr11	65654473	65654474	-	ENST00000525693	C2310	m5C	C7	5'-GGGGGCCCCGGGG-3'	(((...))).... ( -2.90)	loop	mRNA	293T;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	13	chr11:65654468-65654480	RELA	HGNC:9955	ENSG00000173039	GGGGGCCCCGGGG
hsa_m5C_4048	chr11	65654472	65654473	-	ENST00000525693	C2311	m5C	C8	5'-GGGGGCCCCGGGG-3'	(((...))).... ( -2.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	13	chr11:65654468-65654480	RELA	HGNC:9955	ENSG00000173039	GGGGGCCCCGGGG
hsa_m5C_4049	chr11	65654471	65654472	-	ENST00000525693	C2312	m5C	C9	5'-GGGGGCCCCGGGG-3'	(((...))).... ( -2.90)	loop	mRNA	293T;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	13	chr11:65654468-65654480	RELA	HGNC:9955	ENSG00000173039	GGGGGCCCCGGGG
hsa_m5C_4050	chr11	75442494	75442495	-	ENST00000526177	C2500	m5C	C10	5'-GGCAGAGCUCCUGGAGCUGGCCAAGG-3'	(((..(((((...))))).))).... (-11.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr11:75442479-75442504	GDPD5	HGNC:28804	ENSG00000158555	GGCAGAGCUCCUGGAGCUGGCCAAGG
hsa_m5C_4051	chr12	104287184	104287185	+	ENST00000526691	C305	m5C	C28	5'-GGGAGCACGCGGGGGACGGCCUGCCGGCGGGG-3'	....((..(((((......)))))..)).... (-10.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	32	chr12:104287158-104287189	TXNRD1	HGNC:12437	ENSG00000198431	GGGAGCACGCGGGGGACGGCCUGCCGGCGGGG
hsa_m5C_4052	chr17	29121689	29121690	-	ENST00000527372	C1395	m5C	C8	5'-GGAGGAUCUGGCCUCACUGG-3'	.((((......))))..... ( -5.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr17:29121678-29121697	MYO18A	HGNC:31104	ENSG00000196535	GGAGGAUCUGGCCUCACUGG
hsa_m5C_4053	chr11	558316	558317	+	ENST00000527620	C723	m5C	C3	5'-GGCGAAGGAGGGGAGAAGG-3'	NA	loop	lncRNA	lung	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	19	chr11:558315-558333	LMNTD2-AS1	HGNC:41204	ENSG00000254815	GGCGAAGGAGGGGAGAAGG
hsa_m5C_4054	chr11	1275127	1275128	-	ENST00000527886	C2910	m5C	C36	5'-GGGGCCCGAGGGACCCACACAGUGGGGGCCAGCCUCGCUGGAGGG-3'	(((.((....)).)))...((((((((.....))))))))..... (-20.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	45	chr11:1275119-1275163	TOLLIP	HGNC:16476	ENSG00000078902	GGGGCCCGAGGGACCCACACAGUGGGGGCCAGCCUCGCUGGAGGG
hsa_m5C_4055	chr10	28523233	28523234	-	ENST00000528337	C2100	m5C	C7	5'-GGGAGGCUGAGGUGG-3'	NA	loop	lncRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr10:28523226-28523240	WAC-AS1	HGNC:27347	ENSG00000254635	GGGAGGCUGAGGUGG
hsa_m5C_4056	chr8	144326535	144326536	-	ENST00000528718	C317	m5C	C7	5'-GGGACGCCGCUGCGGGCCCCGACGUGGGAGCCGCGGGG-3'	((....)).((((((..(((.....)))..)))))).. (-18.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	38	chr8:144326505-144326542	DGAT1	HGNC:2843	ENSG00000185000	GGGACGCCGCUGCGGGCCCCGACGUGGGAGCCGCGGGG
hsa_m5C_4057	chr8	144326534	144326535	-	ENST00000528718	C318	m5C	C8	5'-GGGACGCCGCUGCGGGCCCCGACGUGGGAGCCGCGGGG-3'	((....)).((((((..(((.....)))..)))))).. (-18.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	38	chr8:144326505-144326542	DGAT1	HGNC:2843	ENSG00000185000	GGGACGCCGCUGCGGGCCCCGACGUGGGAGCCGCGGGG
hsa_m5C_4058	chr8	144326532	144326533	-	ENST00000528718	C320	m5C	C10	5'-GGGACGCCGCUGCGGGCCCCGACGUGGGAGCCGCGGGG-3'	((....)).((((((..(((.....)))..)))))).. (-18.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	38	chr8:144326505-144326542	DGAT1	HGNC:2843	ENSG00000185000	GGGACGCCGCUGCGGGCCCCGACGUGGGAGCCGCGGGG
hsa_m5C_4059	chr8	144326529	144326530	-	ENST00000528718	C323	m5C	C13	5'-GGGACGCCGCUGCGGGCCCCGACGUGGGAGCCGCGGGG-3'	((....)).((((((..(((.....)))..)))))).. (-18.50)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	38	chr8:144326505-144326542	DGAT1	HGNC:2843	ENSG00000185000	GGGACGCCGCUGCGGGCCCCGACGUGGGAGCCGCGGGG
hsa_m5C_4060	chr8	144326525	144326526	-	ENST00000528718	C327	m5C	C17	5'-GGGACGCCGCUGCGGGCCCCGACGUGGGAGCCGCGGGG-3'	((....)).((((((..(((.....)))..)))))).. (-18.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	38	chr8:144326505-144326542	DGAT1	HGNC:2843	ENSG00000185000	GGGACGCCGCUGCGGGCCCCGACGUGGGAGCCGCGGGG
hsa_m5C_4061	chr8	144326524	144326525	-	ENST00000528718	C328	m5C	C18	5'-GGGACGCCGCUGCGGGCCCCGACGUGGGAGCCGCGGGG-3'	((....)).((((((..(((.....)))..)))))).. (-18.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	38	chr8:144326505-144326542	DGAT1	HGNC:2843	ENSG00000185000	GGGACGCCGCUGCGGGCCCCGACGUGGGAGCCGCGGGG
hsa_m5C_4062	chr8	144326523	144326524	-	ENST00000528718	C329	m5C	C19	5'-GGGACGCCGCUGCGGGCCCCGACGUGGGAGCCGCGGGG-3'	((....)).((((((..(((.....)))..)))))).. (-18.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	38	chr8:144326505-144326542	DGAT1	HGNC:2843	ENSG00000185000	GGGACGCCGCUGCGGGCCCCGACGUGGGAGCCGCGGGG
hsa_m5C_4063	chr17	28644989	28644990	-	ENST00000528896	C169	m5C	C4	5'-GGCCG^GUGGCUUGUGG-3'	((((...))))..... ( -3.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr17:28644177-28644187;28644989-28644993	BLTP2	HGNC:28960	ENSG00000007202	GGCCGGUGGCUUGUGG
hsa_m5C_4064	chr8	144792096	144792097	-	ENST00000528957	C294	m5C	C15	5'-GGACAGAGGAAGGGCGCCGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr8:144792092-144792111	RPL8	HGNC:10368	ENSG00000161016	GGACAGAGGAAGGGCGCCGG
hsa_m5C_4065	chr8	144792377	144792378	-	ENST00000528957	C13	m5C	C6	5'-GGCCGCGCUGGUGAACAGGUAGG-3'	..((...(((.....)))...)) ( -4.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr8:144792361-144792383	RPL8	HGNC:10368	ENSG00000161016	GGCCGCGCUGGUGAACAGGUAGG
hsa_m5C_4066	chr8	144792375	144792376	-	ENST00000528957	C15	m5C	C8	5'-GGCCGCGCUGGUGAACAGGUAGG-3'	..((...(((.....)))...)) ( -4.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr8:144792361-144792383	RPL8	HGNC:10368	ENSG00000161016	GGCCGCGCUGGUGAACAGGUAGG
hsa_m5C_4067	chr11	67119747	67119748	+	ENST00000529006	C486	m5C	C4	5'-GGGCCGGCCCGGGGCUCGGGCCCGGG-3'	(((((((((...))))..)))))... (-15.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr11:67119745-67119770	KDM2A	HGNC:13606	ENSG00000173120	GGGCCGGCCCGGGGCUCGGGCCCGGG
hsa_m5C_4068	chr11	67119752	67119753	+	ENST00000529006	C491	m5C	C9	5'-GGGCCGGCCCGGGGCUCGGGCCCGGG-3'	(((((((((...))))..)))))... (-15.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr11:67119745-67119770	KDM2A	HGNC:13606	ENSG00000173120	GGGCCGGCCCGGGGCUCGGGCCCGGG
hsa_m5C_4069	chr11	67119753	67119754	+	ENST00000529006	C492	m5C	C10	5'-GGGCCGGCCCGGGGCUCGGGCCCGGG-3'	(((((((((...))))..)))))... (-15.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr11:67119745-67119770	KDM2A	HGNC:13606	ENSG00000173120	GGGCCGGCCCGGGGCUCGGGCCCGGG
hsa_m5C_4070	chr11	67119639	67119640	+	ENST00000529006	C378	m5C	C32	5'-GGGGCCCGCGUUCCGGGGGGCCGGGGCGGCGCGGGG-3'	....((((((((((((....)))))...))))))). (-21.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	36	chr11:67119609-67119644	KDM2A	HGNC:13606	ENSG00000173120	GGGGCCCGCGUUCCGGGGGGCCGGGGCGGCGCGGGG
hsa_m5C_4071	chr11	78196526	78196527	+	ENST00000529308	C531	m5C	C12	5'-GGUGGCGCCGGCCCCCCGG-3'	((.(((....))))).... ( -7.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr11:78196516-78196534	USP35	HGNC:20061	ENSG00000118369	GGUGGCGCCGGCCCCCCGG
hsa_m5C_4072	chr16	31713330	31713331	+	ENST00000529515	C88	m5C	C12	5'-GGAGGCCAAGGCGG-3'	....((....)).. ( -1.70)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr16:31713320-31713333	KRBOX5	HGNC:26987	ENSG00000197302	GGAGGCCAAGGCGG
hsa_m5C_4073	chr16	31087640	31087641	-	ENST00000529564	C590	m5C	C3	5'-GGCGAGUGGCCCUGGCAGG-3'	(((.....)))........ ( -4.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	19	chr16:31087625-31087643	NA	NA	ENSG00000255439	GGCGAGUGGCCCUGGCAGG
hsa_m5C_4074	chr16	31087632	31087633	-	ENST00000529564	C598	m5C	C11	5'-GGCGAGUGGCCCUGGCAGG-3'	(((.....)))........ ( -4.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	19	chr16:31087625-31087643	NA	NA	ENSG00000255439	GGCGAGUGGCCCUGGCAGG
hsa_m5C_4075	chr16	31087631	31087632	-	ENST00000529564	C599	m5C	C12	5'-GGCGAGUGGCCCUGGCAGG-3'	(((.....)))........ ( -4.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	19	chr16:31087625-31087643	NA	NA	ENSG00000255439	GGCGAGUGGCCCUGGCAGG
hsa_m5C_4076	chr16	31093414	31093415	-	ENST00000529564	C407	m5C	C5	5'-GGGGCAGGGGUUUCGGGCUGGUGG-3'	(((((....))))).......... ( -2.50)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	24	chr16:31093396-31093419	NA	NA	ENSG00000255439	GGGGCAGGGGUUUCGGGCUGGUGG
hsa_m5C_4077	chr11	83261178	83261179	-	ENST00000529689	C1892	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr11:83261176-83261190	CCDC90B	HGNC:28108	ENSG00000137500	GGAGGCUGAGGCAGG
hsa_m5C_4078	chr11	83261313	83261314	-	ENST00000529689	C1757	m5C	C13	5'-GGGAGGCUGAGGCGG-3'	.....((....)).. ( -0.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr11:83261312-83261326	CCDC90B	HGNC:28108	ENSG00000137500	GGGAGGCUGAGGCGG
hsa_m5C_4079	chr11	783703	783704	+	ENST00000530083	C297	m5C	C3	5'-GGCGGUGGGG-3'	NA	loop	lncRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	10	chr11:783702-783711	GATD1-DT	HGNC:29907	ENSG00000255284	GGCGGUGGGG
hsa_m5C_4080	chr11	119095194	119095195	-	ENST00000530167	C271	m5C	C9	5'-GGAGCUGGCGGGCAAUGCGG-3'	...(((....)))....... ( -2.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	20	chr11:119095184-119095203	H2AX	HGNC:4739	ENSG00000188486	GGAGCUGGCGGGCAAUGCGG
hsa_m5C_4081	chr11	119095190	119095191	-	ENST00000530167	C275	m5C	C13	5'-GGAGCUGGCGGGCAAUGCGG-3'	...(((....)))....... ( -2.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	20	chr11:119095184-119095203	H2AX	HGNC:4739	ENSG00000188486	GGAGCUGGCGGGCAAUGCGG
hsa_m5C_4082	chr11	119094499	119094500	-	ENST00000530167	C966	m5C	C5	5'-GGGCCGAGGUGGGCAGUCCAGG-3'	(((((......)))...))... ( -5.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr11:119094483-119094504	H2AX	HGNC:4739	ENSG00000188486	GGGCCGAGGUGGGCAGUCCAGG
hsa_m5C_4083	chr11	119094700	119094701	-	ENST00000530167	C765	m5C	C6	5'-GGGUUCGGGCCUUCCGGAUGCGGCUUGGG-3'	....(((((((..........))))))). ( -7.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr11:119094678-119094706	H2AX	HGNC:4739	ENSG00000188486	GGGUUCGGGCCUUCCGGAUGCGGCUUGGG
hsa_m5C_4084	chr12	754122	754123	+	ENST00000530271	C1201	m5C	C9	5'-GGCAGCGGCGGCGG-3'	....((....)).. ( -1.60)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	14	chr12:754115-754128	WNK1	HGNC:14540	ENSG00000060237	GGCAGCGGCGGCGG
hsa_m5C_4085	chr12	754125	754126	+	ENST00000530271	C1204	m5C	C12	5'-GGCAGCGGCGGCGG-3'	....((....)).. ( -1.60)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	14	chr12:754115-754128	WNK1	HGNC:14540	ENSG00000060237	GGCAGCGGCGGCGG
hsa_m5C_4086	chr8	144462559	144462560	-	ENST00000530374	C312	m5C	C29	5'-GGGGUCGGGGUCGGGGUCGGAGCCGGGCCCGGGG-3'	.(((((.((.((.......)).)).))))).... (-17.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	34	chr8:144462555-144462588	ZFTRAF1	HGNC:17806	ENSG00000187954	GGGGUCGGGGUCGGGGUCGGAGCCGGGCCCGGGG
hsa_m5C_4087	chr8	144462558	144462559	-	ENST00000530374	C313	m5C	C30	5'-GGGGUCGGGGUCGGGGUCGGAGCCGGGCCCGGGG-3'	.(((((.((.((.......)).)).))))).... (-17.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	34	chr8:144462555-144462588	ZFTRAF1	HGNC:17806	ENSG00000187954	GGGGUCGGGGUCGGGGUCGGAGCCGGGCCCGGGG
hsa_m5C_4088	chr11	810320	810321	+	ENST00000530797	C338	m5C	C7	5'-GGACAGCGUGGGUAUCGAGGCGG-3'	......(((..........))). ( -0.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr11:810315-810337	RPLP2	HGNC:10377	ENSG00000177600	GGACAGCGUGGGUAUCGAGGCGG
hsa_m5C_4089	chr11	810329	810330	+	ENST00000530797	C347	m5C	C16	5'-GGACAGCGUGGGUAUCGAGGCGG-3'	......(((..........))). ( -0.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr11:810315-810337	RPLP2	HGNC:10377	ENSG00000177600	GGACAGCGUGGGUAUCGAGGCGG
hsa_m5C_4090	chr11	16789875	16789876	-	ENST00000531066	C3068	m5C	C10	5'-GGCAGAG^GGCUCUCAGGGUCCACGUCAAGG-3'	(((...((((((...))))))..))).... ( -8.60)	loop	mRNA	HeLa,rip antibody: ALYREF;HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	30	chr11:16789856-16789878;16790798-16790804	PLEKHA7	HGNC:27049	ENSG00000166689	GGCAGAGGGCUCUCAGGGUCCACGUCAAGG
hsa_m5C_4091	chr11	16789873	16789874	-	ENST00000531066	C3070	m5C	C12	5'-GGCAGAG^GGCUCUCAGGGUCCACGUCAAGG-3'	(((...((((((...))))))..))).... ( -8.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr11:16789856-16789878;16790798-16790804	PLEKHA7	HGNC:27049	ENSG00000166689	GGCAGAGGGCUCUCAGGGUCCACGUCAAGG
hsa_m5C_4092	chr11	16789871	16789872	-	ENST00000531066	C3072	m5C	C14	5'-GGCAGAG^GGCUCUCAGGGUCCACGUCAAGG-3'	(((...((((((...))))))..))).... ( -8.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr11:16789856-16789878;16790798-16790804	PLEKHA7	HGNC:27049	ENSG00000166689	GGCAGAGGGCUCUCAGGGUCCACGUCAAGG
hsa_m5C_4093	chr11	16789865	16789866	-	ENST00000531066	C3078	m5C	C20	5'-GGCAGAG^GGCUCUCAGGGUCCACGUCAAGG-3'	(((...((((((...))))))..))).... ( -8.60)	loop	mRNA	HeLa,rip antibody: ALYREF;HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	30	chr11:16789856-16789878;16790798-16790804	PLEKHA7	HGNC:27049	ENSG00000166689	GGCAGAGGGCUCUCAGGGUCCACGUCAAGG
hsa_m5C_4094	chr11	16789864	16789865	-	ENST00000531066	C3079	m5C	C21	5'-GGCAGAG^GGCUCUCAGGGUCCACGUCAAGG-3'	(((...((((((...))))))..))).... ( -8.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr11:16789856-16789878;16790798-16790804	PLEKHA7	HGNC:27049	ENSG00000166689	GGCAGAGGGCUCUCAGGGUCCACGUCAAGG
hsa_m5C_4095	chr11	75399535	75399536	+	ENST00000531188	C19	m5C	C5	5'-GGAGCGCGGCGGCAAGAUGG-3'	...((......))....... ( -1.90)	loop	mRNA	HEK293;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038;30526041	20	chr11:75399532-75399551	RPS3	HGNC:10420	ENSG00000149273	GGAGCGCGGCGGCAAGAUGG
hsa_m5C_4096	chr11	75399537	75399538	+	ENST00000531188	C21	m5C	C7	5'-GGAGCGCGGCGGCAAGAUGG-3'	...((......))....... ( -1.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	20	chr11:75399532-75399551	RPS3	HGNC:10420	ENSG00000149273	GGAGCGCGGCGGCAAGAUGG
hsa_m5C_4097	chr11	75399540	75399541	+	ENST00000531188	C24	m5C	C10	5'-GGAGCGCGGCGGCAAGAUGG-3'	...((......))....... ( -1.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HCT116;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	20	chr11:75399532-75399551	RPS3	HGNC:10420	ENSG00000149273	GGAGCGCGGCGGCAAGAUGG
hsa_m5C_4098	chr6	136276412	136276413	-	ENST00000531224	C1360	m5C	C8	5'-GGGAGGGCAGAGGGAGAAUGGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	30526041	22	chr6:136276399-136276420	BCLAF1	HGNC:16863	ENSG00000029363	GGGAGGGCAGAGGGAGAAUGGG
hsa_m5C_4099	chr11	70188018	70188019	+	ENST00000531349	C3367	m5C	C4	5'-GGGCUGGGCAGGCCAGCCGGG-3'	.((((((.....))))))... (-12.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr11:70188016-70188036	ANO1	HGNC:21625	ENSG00000131620	GGGCUGGGCAGGCCAGCCGGG
hsa_m5C_4100	chr11	70188023	70188024	+	ENST00000531349	C3372	m5C	C9	5'-GGGCUGGGCAGGCCAGCCGGG-3'	.((((((.....))))))... (-12.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr11:70188016-70188036	ANO1	HGNC:21625	ENSG00000131620	GGGCUGGGCAGGCCAGCCGGG
hsa_m5C_4101	chr11	86952270	86952271	-	ENST00000531380	C795	m5C	C9	5'-GGAAGGGCCAGGUGAUGAAGAGG-3'	((.....)).............. ( -0.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr11:86952257-86952279	FZD4	HGNC:4042	ENSG00000174804	GGAAGGGCCAGGUGAUGAAGAGG
hsa_m5C_4102	chr11	62795002	62795003	-	ENST00000531709	C3424	m5C	C10	5'-GGAAG^UGGACGGAAAGUCCCGG-3'	......((((.....))))... ( -5.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr11:62794991-62795007;62795901-62795905	NXF1	HGNC:8071	ENSG00000162231	GGAAGUGGACGGAAAGUCCCGG
hsa_m5C_4103	chr11	65776002	65776003	-	ENST00000532090	C4875	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr11:65776000-65776014	AP5B1	HGNC:25104	ENSG00000254470	GGAGGCUGAGGCAGG
hsa_m5C_4104	chr11	65780106	65780107	-	ENST00000532090	C771	m5C	C6	5'-GGCCGCGGGUAGCGAUCUGGGGCGAGG-3'	.(((.(((((....))))).))).... (-11.80)	loop	mRNA	293T;HeLa	m5C-RIP-seq:(Medium),RNA-BisSeq:(High);UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;38168991	28418038;38168991	27	chr11:65780086-65780112	AP5B1	HGNC:25104	ENSG00000254470	GGCCGCGGGUAGCGAUCUGGGGCGAGG
hsa_m5C_4105	chr11	65774698	65774699	-	ENST00000532090	C6179	m5C	C6	5'-GGGGGCGGUGG-3'	NA	loop	mRNA	SRV-infected and -uninfected Jurkat	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	30009162	11	chr11:65774694-65774704	AP5B1	HGNC:25104	ENSG00000254470	GGGGGCGGUGG
hsa_m5C_4106	chr8	143581311	143581312	-	ENST00000532741	C1683	m5C	C3	5'-GGCCUCCAGCGGCACCAGCGGAGACCACGG-3'	((.((((.((.......)))))).)).... (-10.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr8:143581285-143581314	EEF1D	HGNC:3211	ENSG00000104529	GGCCUCCAGCGGCACCAGCGGAGACCACGG
hsa_m5C_4107	chr8	143581310	143581311	-	ENST00000532741	C1684	m5C	C4	5'-GGCCUCCAGCGGCACCAGCGGAGACCACGG-3'	((.((((.((.......)))))).)).... (-10.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr8:143581285-143581314	EEF1D	HGNC:3211	ENSG00000104529	GGCCUCCAGCGGCACCAGCGGAGACCACGG
hsa_m5C_4108	chr8	143581308	143581309	-	ENST00000532741	C1686	m5C	C6	5'-GGCCUCCAGCGGCACCAGCGGAGACCACGG-3'	((.((((.((.......)))))).)).... (-10.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr8:143581285-143581314	EEF1D	HGNC:3211	ENSG00000104529	GGCCUCCAGCGGCACCAGCGGAGACCACGG
hsa_m5C_4109	chr8	143581307	143581308	-	ENST00000532741	C1687	m5C	C7	5'-GGCCUCCAGCGGCACCAGCGGAGACCACGG-3'	((.((((.((.......)))))).)).... (-10.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr8:143581285-143581314	EEF1D	HGNC:3211	ENSG00000104529	GGCCUCCAGCGGCACCAGCGGAGACCACGG
hsa_m5C_4110	chr8	143581304	143581305	-	ENST00000532741	C1690	m5C	C10	5'-GGCCUCCAGCGGCACCAGCGGAGACCACGG-3'	((.((((.((.......)))))).)).... (-10.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr8:143581285-143581314	EEF1D	HGNC:3211	ENSG00000104529	GGCCUCCAGCGGCACCAGCGGAGACCACGG
hsa_m5C_4111	chr11	126211807	126211808	+	ENST00000533050	C27	m5C	C5	5'-GGAGCAGUGGCGUUUGGAGG-3'	.((((......))))..... ( -0.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr11:126211804-126211823	FAM118B	HGNC:26110	ENSG00000197798	GGAGCAGUGGCGUUUGGAGG
hsa_m5C_4112	chr11	126262260	126262261	+	ENST00000533050	C1309	m5C	C4	5'-GGGCGGGGUAGAAGAGGGGGG-3'	NA	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	21	chr11:126262258-126262278	FAM118B	HGNC:26110	ENSG00000197798	GGGCGGGGUAGAAGAGGGGGG
hsa_m5C_4113	chr11	66685856	66685857	-	ENST00000533211	C7776	m5C	C11	5'-GGGGCAAGGUCCCAGG-3'	(((((...)))))... ( -6.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	16	chr11:66685852-66685867	SPTBN2	HGNC:11276	ENSG00000173898	GGGGCAAGGUCCCAGG
hsa_m5C_4114	chr11	6616750	6616751	-	ENST00000533371	C908	m5C	C5	5'-GGGCCGGGGCCGGGCCGGG-3'	((.(((....))).))... ( -8.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	19	chr11:6616737-6616755	TPP1	HGNC:2073	ENSG00000166340	GGGCCGGGGCCGGGCCGGG
hsa_m5C_4115	chr14	64948285	64948286	-	ENST00000533601	C967	m5C	C24	5'-GGCCCGUGGGCAGACAGGGGAGCCGG-3'	(((((.((......)).))..))).. ( -9.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chr14:64948284-64948309	RAB15	HGNC:20150	ENSG00000139998	GGCCCGUGGGCAGACAGGGGAGCCGG
hsa_m5C_4116	chr14	64946811	64946812	-	ENST00000533601	C2441	m5C	C4	5'-GGGCGAGGCCUAGGAAGAGG-3'	((((...))))......... ( -3.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr14:64946796-64946815	RAB15	HGNC:20150	ENSG00000139998	GGGCGAGGCCUAGGAAGAGG
hsa_m5C_4117	chr14	64972153	64972154	-	ENST00000533601	C183	m5C	C8	5'-GGGCGGGCGCGGGCCGCGAUGG-3'	..(((.((....)))))..... ( -7.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	22	chr14:64972140-64972161	RAB15	HGNC:20150	ENSG00000139998	GGGCGGGCGCGGGCCGCGAUGG
hsa_m5C_4118	chr14	64972151	64972152	-	ENST00000533601	C185	m5C	C10	5'-GGGCGGGCGCGGGCCGCGAUGG-3'	..(((.((....)))))..... ( -7.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	22	chr14:64972140-64972161	RAB15	HGNC:20150	ENSG00000139998	GGGCGGGCGCGGGCCGCGAUGG
hsa_m5C_4119	chr11	44095690	44095691	+	ENST00000533608	C14	m5C	C10	5'-GGCCCGGAUCCCGGUUACCGG-3'	((.((((...))))...)).. ( -6.30)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	21	chr11:44095682-44095702	EXT2	HGNC:3513	ENSG00000151348	GGCCCGGAUCCCGGUUACCGG
hsa_m5C_4120	chr11	7987615	7987616	+	ENST00000533626	C890	m5C	C3	5'-GGCGGCCGCGUGGUCAGG-3'	...((((....))))... ( -4.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr11:7987614-7987631	EIF3F	HGNC:3275	ENSG00000175390	GGCGGCCGCGUGGUCAGG
hsa_m5C_4121	chr19	14090382	14090383	-	ENST00000533683	C369	m5C	C9	5'-GGAGACGGCGGCGG-3'	.....((....)). ( -0.60)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	14	chr19:14090378-14090391	SAMD1	HGNC:17958	ENSG00000141858	GGAGACGGCGGCGG
hsa_m5C_4122	chr19	14090379	14090380	-	ENST00000533683	C372	m5C	C12	5'-GGAGACGGCGGCGG-3'	.....((....)). ( -0.60)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	14	chr19:14090378-14090391	SAMD1	HGNC:17958	ENSG00000141858	GGAGACGGCGGCGG
hsa_m5C_4123	chr19	14089952	14089953	-	ENST00000533683	C799	m5C	C12	5'-GGGGGCAGCGGCGG-3'	....((....)).. ( -0.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	14	chr19:14089951-14089964	SAMD1	HGNC:17958	ENSG00000141858	GGGGGCAGCGGCGG
hsa_m5C_4124	chr19	14090024	14090025	-	ENST00000533683	C727	m5C	C7	5'-GGGGGGCGCGGUGCGGG-3'	......(((...))).. ( -1.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	17	chr19:14090015-14090031	SAMD1	HGNC:17958	ENSG00000141858	GGGGGGCGCGGUGCGGG
hsa_m5C_4125	chr19	14090022	14090023	-	ENST00000533683	C729	m5C	C9	5'-GGGGGGCGCGGUGCGGG-3'	......(((...))).. ( -1.80)	bulge	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	17	chr19:14090015-14090031	SAMD1	HGNC:17958	ENSG00000141858	GGGGGGCGCGGUGCGGG
hsa_m5C_4126	chr19	14090017	14090018	-	ENST00000533683	C734	m5C	C14	5'-GGGGGGCGCGGUGCGGG-3'	......(((...))).. ( -1.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	17	chr19:14090015-14090031	SAMD1	HGNC:17958	ENSG00000141858	GGGGGGCGCGGUGCGGG
hsa_m5C_4127	chr15	80596565	80596566	+	ENST00000533983	C5328	m5C	C6	5'-GGAGGCCGGAAUGCUCAUGG-3'	.(((.........))).... ( -1.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr15:80596561-80596580	ARNT2	HGNC:16876	ENSG00000172379	GGAGGCCGGAAUGCUCAUGG
hsa_m5C_4128	chr6	125153854	125153855	+	ENST00000534000	C83	m5C	C15	5'-GGAGUGGGAGCGAGCGGCGGGG-3'	.........((.....)).... ( -1.50)	bulge	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	22	chr6:125153841-125153862	TPD52L1	HGNC:12006	ENSG00000111907	GGAGUGGGAGCGAGCGGCGGGG
hsa_m5C_4129	chr11	8964342	8964343	-	ENST00000534025	C100	m5C	C6	5'-GGGCUCCGGGCUGUGGGACCGCUGGG-3'	.....((.(((.((...)).))).)) ( -6.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	30872485	26	chr11:8964323-8964348	TMEM9B	HGNC:1168	ENSG00000175348	GGGCUCCGGGCUGUGGGACCGCUGGG
hsa_m5C_4130	chr11	8964341	8964342	-	ENST00000534025	C101	m5C	C7	5'-GGGCUCCGGGCUGUGGGACCGCUGGG-3'	.....((.(((.((...)).))).)) ( -6.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	26	chr11:8964323-8964348	TMEM9B	HGNC:1168	ENSG00000175348	GGGCUCCGGGCUGUGGGACCGCUGGG
hsa_m5C_4131	chr11	8964344	8964345	-	ENST00000534025	C98	m5C	C4	5'-GGGCUCCGGGCUGUGGGACCGCUGGG-3'	.....((.(((.((...)).))).)) ( -6.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	26	chr11:8964323-8964348	TMEM9B	HGNC:1168	ENSG00000175348	GGGCUCCGGGCUGUGGGACCGCUGGG
hsa_m5C_4132	chr1	54170532	54170533	-	ENST00000534324	C5311	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	spleen	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	NA	15	chr1:54170524-54170538	CYB5RL	HGNC:32220	ENSG00000215883	GGAGGCUGAGGCAGG
hsa_m5C_4133	chr11	65502594	65502595	+	ENST00000534336	C4888	m5C	C8	5'-GGGUGGGCUUUUGUUGAUGAGGGAGGG-3'	.......(((((.((...)).))))). ( -2.00)	loop	lncRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4hunter score>=1.2;RNAfold;rG4-seq:(High)	m6A-Atlas database	22344696	27	chr11:65502588-65502614	MALAT1	HGNC:29665	ENSG00000251562	GGGUGGGCUUUUGUUGAUGAGGGAGGG
hsa_m5C_4134	chr11	118436726	118436727	+	ENST00000534358	C236	m5C	C15	5'-GGGAAGCAGCGGGGCUGGGGUUCCAGGG-3'	((((..((((...))))...)))).... ( -7.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	28	chr11:118436713-118436740	KMT2A	HGNC:7132	ENSG00000118058	GGGAAGCAGCGGGGCUGGGGUUCCAGGG
hsa_m5C_4135	chr11	498849	498850	-	ENST00000534797	C2106	m5C	C10	5'-GGGAGCUGGCCCUGGGCAGCAACAAGCUGGGUGAUGUGGG-3'	(((......)))....((((.....))))........... ( -8.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	40	chr11:498820-498859	RNH1	HGNC:10074	ENSG00000023191	GGGAGCUGGCCCUGGGCAGCAACAAGCUGGGUGAUGUGGG
hsa_m5C_4136	chr11	498847	498848	-	ENST00000534797	C2108	m5C	C12	5'-GGGAGCUGGCCCUGGGCAGCAACAAGCUGGGUGAUGUGGG-3'	(((......)))....((((.....))))........... ( -8.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	40	chr11:498820-498859	RNH1	HGNC:10074	ENSG00000023191	GGGAGCUGGCCCUGGGCAGCAACAAGCUGGGUGAUGUGGG
hsa_m5C_4137	chr12	53254092	53254093	+	ENST00000534842	C1726	m5C	C5	5'-GGCUCUGCUGGCAGUGGUGG-3'	.((((((....))).))).. ( -2.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	20	chr12:53254089-53254108	MFSD5	HGNC:28156	ENSG00000182544	GGCUCUGCUGGCAGUGGUGG
hsa_m5C_4138	chr12	6724688	6724689	+	ENST00000534947	C403	m5C	C25	5'-GGAAGUGAAGGUGACAGGGCAGAACCAGG-3'	................((......))... ( -1.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038;31061524	29	chr12:6724665-6724693	COPS7A	HGNC:16758	ENSG00000111652	GGAAGUGAAGGUGACAGGGCAGAACCAGG
hsa_m5C_4139	chr12	6724689	6724690	+	ENST00000534947	C404	m5C	C26	5'-GGAAGUGAAGGUGACAGGGCAGAACCAGG-3'	................((......))... ( -1.90)	loop	mRNA	293T;HeLa;heart,HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;38168991	29	chr12:6724665-6724693	COPS7A	HGNC:16758	ENSG00000111652	GGAAGUGAAGGUGACAGGGCAGAACCAGG
hsa_m5C_4140	chr8	42855432	42855433	-	ENST00000534961	C1980	m5C	C7	5'-GGAGAUCAGGACCAUCCUGGCUAACAUGG-3'	..((.((((((...))))))))....... ( -6.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr8:42855411-42855439	RNF170	HGNC:25358	ENSG00000120925	GGAGAUCAGGACCAUCCUGGCUAACAUGG
hsa_m5C_4141	chr6	82364999	82365000	+	ENST00000535040	C975	m5C	C32	5'-GGGGGUGCUCCCGGGGCCCCGCCGCCGGGGACGGG-3'	(((((.((((...))))))).)).(((....))). (-16.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	35	chr6:82364969-82365003	TPBG	HGNC:12004	ENSG00000146242	GGGGGUGCUCCCGGGGCCCCGCCGCCGGGGACGGG
hsa_m5C_4142	chr5	65563317	65563318	+	ENST00000535264	C80	m5C	C6	5'-GGCGGCGGAAAGUGG-3'	NA	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr5:65563313-65563327	PPWD1	HGNC:28954	ENSG00000113593	GGCGGCGGAAAGUGG
hsa_m5C_4143	chr19	1461096	1461097	+	ENST00000535453	C3295	m5C	C5	5'-GGUGCUGAGGGAGGCGGG-3'	..((((......)))).. ( -2.70)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	18	chr19:1461093-1461110	APC2	HGNC:24036	ENSG00000115266	GGUGCUGAGGGAGGCGGG
hsa_m5C_4144	chr14	104755659	104755660	+	ENST00000535554	C204	m5C	C5	5'-GGGGCCCAGGCCUACCUGGACCACGUGUGG-3'	..((.(((((....))))).))........ (-10.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr14:104755656-104755685	SIVA1	HGNC:17712	ENSG00000184990	GGGGCCCAGGCCUACCUGGACCACGUGUGG
hsa_m5C_4145	chr14	104755660	104755661	+	ENST00000535554	C205	m5C	C6	5'-GGGGCCCAGGCCUACCUGGACCACGUGUGG-3'	..((.(((((....))))).))........ (-10.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr14:104755656-104755685	SIVA1	HGNC:17712	ENSG00000184990	GGGGCCCAGGCCUACCUGGACCACGUGUGG
hsa_m5C_4146	chr17	47847268	47847269	-	ENST00000536300	C1463	m5C	C6	5'-GGUAUCCCGGGGGGCACUGG-3'	......((((......)))) ( -4.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr17:47847255-47847274	SP6	HGNC:14530	ENSG00000189120	GGUAUCCCGGGGGGCACUGG
hsa_m5C_4147	chr11	95230848	95230849	-	ENST00000536441	C354	m5C	C5	5'-GGGGCGGCGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	10	chr11:95230844-95230853	SESN3	HGNC:23060	ENSG00000149212	GGGGCGGCGG
hsa_m5C_4148	chr11	95230845	95230846	-	ENST00000536441	C357	m5C	C8	5'-GGGGCGGCGG-3'	NA	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	10	chr11:95230844-95230853	SESN3	HGNC:23060	ENSG00000149212	GGGGCGGCGG
hsa_m5C_4149	chr1	242084538	242084539	-	ENST00000536534	C7347	m5C	C7	5'-GGACGGCCGAGUGGUCUGAGG-3'	((((.((...)).)))).... ( -5.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	21	chr1:242084525-242084545	PLD5	HGNC:26879	ENSG00000180287	GGACGGCCGAGUGGUCUGAGG
hsa_m5C_4150	chr1	242084537	242084538	-	ENST00000536534	C7348	m5C	C8	5'-GGACGGCCGAGUGGUCUGAGG-3'	((((.((...)).)))).... ( -5.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	21	chr1:242084525-242084545	PLD5	HGNC:26879	ENSG00000180287	GGACGGCCGAGUGGUCUGAGG
hsa_m5C_4151	chr1	242084529	242084530	-	ENST00000536534	C7356	m5C	C16	5'-GGACGGCCGAGUGGUCUGAGG-3'	((((.((...)).)))).... ( -5.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	21	chr1:242084525-242084545	PLD5	HGNC:26879	ENSG00000180287	GGACGGCCGAGUGGUCUGAGG
hsa_m5C_4152	chr6	17706629	17706630	-	ENST00000537253	C205	m5C	C3	5'-GGCGGCCGGACCGG-3'	..(((.....))). ( -2.50)	loop	mRNA	HeLa	RBS-Seq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30872485	14	chr6:17706619-17706632	NUP153	HGNC:8062	ENSG00000124789	GGCGGCCGGACCGG
hsa_m5C_4153	chr6	17706626	17706627	-	ENST00000537253	C208	m5C	C6	5'-GGCGGCCGGACCGG-3'	..(((.....))). ( -2.50)	loop	mRNA	HeLa	RBS-Seq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30872485	14	chr6:17706619-17706632	NUP153	HGNC:8062	ENSG00000124789	GGCGGCCGGACCGG
hsa_m5C_4154	chr6	17706625	17706626	-	ENST00000537253	C209	m5C	C7	5'-GGCGGCCGGACCGG-3'	..(((.....))). ( -2.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	14	chr6:17706619-17706632	NUP153	HGNC:8062	ENSG00000124789	GGCGGCCGGACCGG
hsa_m5C_4155	chr17	5383472	5383473	+	ENST00000537505	C3042	m5C	C11	5'-GGCGUGGGAUCAGAUUUGGUGAUGG-3'	........((((.......)))).. ( -1.40)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr17:5383463-5383487	RABEP1	HGNC:17677	ENSG00000029725	GGCGUGGGAUCAGAUUUGGUGAUGG
hsa_m5C_4156	chr20	44651712	44651713	-	ENST00000537820	C33	m5C	C4	5'-GGCCGGCCGCGGCCACCGCUGG-3'	(((((....)))))........ (-10.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr20:44651695-44651716	ADA	HGNC:186	ENSG00000196839	GGCCGGCCGCGGCCACCGCUGG
hsa_m5C_4157	chr6	159680898	159680899	-	ENST00000538183	C2337	m5C	C11	5'-GGCUGGAGUGCAGUGGCGCGACCGG-3'	..((((.((((....))))..)))) ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr6:159680885-159680909	SOD2	HGNC:11180	ENSG00000291237	GGCUGGAGUGCAGUGGCGCGACCGG
hsa_m5C_4158	chr6	159680892	159680893	-	ENST00000538183	C2343	m5C	C17	5'-GGCUGGAGUGCAGUGGCGCGACCGG-3'	..((((.((((....))))..)))) ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr6:159680885-159680909	SOD2	HGNC:11180	ENSG00000291237	GGCUGGAGUGCAGUGGCGCGACCGG
hsa_m5C_4159	chr4	15003956	15003957	+	ENST00000538197	C1477	m5C	C3	5'-GGCGGCGGCAGCGG-3'	....((....)).. ( -1.70)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	14	chr4:15003955-15003968	CPEB2	HGNC:21745	ENSG00000137449	GGCGGCGGCAGCGG
hsa_m5C_4160	chr4	15003959	15003960	+	ENST00000538197	C1480	m5C	C6	5'-GGCGGCGGCAGCGG-3'	....((....)).. ( -1.70)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	14	chr4:15003955-15003968	CPEB2	HGNC:21745	ENSG00000137449	GGCGGCGGCAGCGG
hsa_m5C_4161	chr4	15003962	15003963	+	ENST00000538197	C1483	m5C	C9	5'-GGCGGCGGCAGCGG-3'	....((....)).. ( -1.70)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	14	chr4:15003955-15003968	CPEB2	HGNC:21745	ENSG00000137449	GGCGGCGGCAGCGG
hsa_m5C_4162	chr4	15002882	15002883	+	ENST00000538197	C403	m5C	C3	5'-GGCGGCGGCGCGG-3'	.(((....))).. ( -4.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969	13	chr4:15002881-15002893	CPEB2	HGNC:21745	ENSG00000137449	GGCGGCGGCGCGG
hsa_m5C_4163	chr22	38216273	38216274	+	ENST00000538320	C2229	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr22:38216269-38216283	MAFF	HGNC:6780	ENSG00000185022	GGAGGCUGAGGCAGG
hsa_m5C_4164	chr11	124877969	124877970	+	ENST00000538940	C3194	m5C	C3	5'-GGCCAGGGGCACGG-3'	.(((...))).... ( -2.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	14	chr11:124877968-124877981	ROBO3	HGNC:13433	ENSG00000154134	GGCCAGGGGCACGG
hsa_m5C_4165	chr11	124877970	124877971	+	ENST00000538940	C3195	m5C	C4	5'-GGCCAGGGGCACGG-3'	.(((...))).... ( -2.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	14	chr11:124877968-124877981	ROBO3	HGNC:13433	ENSG00000154134	GGCCAGGGGCACGG
hsa_m5C_4166	chr11	124877976	124877977	+	ENST00000538940	C3201	m5C	C10	5'-GGCCAGGGGCACGG-3'	.(((...))).... ( -2.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	14	chr11:124877968-124877981	ROBO3	HGNC:13433	ENSG00000154134	GGCCAGGGGCACGG
hsa_m5C_4167	chr17	64496682	64496683	-	ENST00000539111	C372	m5C	C7	5'-GGGUGCCACCCCGGCUUCGGACCCUUGG-3'	(((((((.....))).....)))).... ( -8.00)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr17:64496662-64496689	POLG2	HGNC:9180	ENSG00000256525	GGGUGCCACCCCGGCUUCGGACCCUUGG
hsa_m5C_4168	chr10	104255184	104255185	+	ENST00000539281	C329	m5C	C10	5'-GGGGCCGGUCCCGGAGG-3'	(((......)))..... ( -4.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr10:104255176-104255192	GSTO1	HGNC:13312	ENSG00000148834	GGGGCCGGUCCCGGAGG
hsa_m5C_4169	chr10	104255185	104255186	+	ENST00000539281	C330	m5C	C11	5'-GGGGCCGGUCCCGGAGG-3'	(((......)))..... ( -4.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr10:104255176-104255192	GSTO1	HGNC:13312	ENSG00000148834	GGGGCCGGUCCCGGAGG
hsa_m5C_4170	chr11	47177632	47177633	-	ENST00000539589	C1916	m5C	C6	5'-GGGUUCCUGGGGUGGGCUUGGGG-3'	.....((((((.....)))))). ( -5.70)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	23	chr11:47177616-47177638	PACSIN3	HGNC:8572	ENSG00000165912	GGGUUCCUGGGGUGGGCUUGGGG
hsa_m5C_4171	chr1	33256604	33256605	+	ENST00000539719	C114	m5C	C6	5'-GGCCGCCGGGCGCGGGGCUGCGG-3'	((((.(((....))))))).... (-10.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr1:33256600-33256622	ZNF362	HGNC:18079	ENSG00000160094	GGCCGCCGGGCGCGGGGCUGCGG
hsa_m5C_4172	chr1	33256616	33256617	+	ENST00000539719	C126	m5C	C18	5'-GGCCGCCGGGCGCGGGGCUGCGG-3'	((((.(((....))))))).... (-10.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr1:33256600-33256622	ZNF362	HGNC:18079	ENSG00000160094	GGCCGCCGGGCGCGGGGCUGCGG
hsa_m5C_4173	chr11	75422707	75422708	-	ENST00000539798	C1786	m5C	C16	5'-GGCGGGCGGGAUGAUCGCGG-3'	.....((((.....)))).. ( -4.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	20	chr11:75422704-75422723	KLHL35	HGNC:26597	ENSG00000149243	GGCGGGCGGGAUGAUCGCGG
hsa_m5C_4174	chr11	64251653	64251654	+	ENST00000540288	C108	m5C	C42	5'-GGGCUCCGUGGGUCCCCGACCCGCCCCUGGCCGGGCCAUGGCGGG-3'	((((((...))))))....((((((..((((...)))).)))))) (-22.90)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	m5C-RIP-seq:(Medium)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	31061524	45	chr11:64251613-64251657	PLCB3	HGNC:9056	ENSG00000149782	GGGCUCCGUGGGUCCCCGACCCGCCCCUGGCCGGGCCAUGGCGGG
hsa_m5C_4175	chr9	133469080	133469081	+	ENST00000540581	C1174	m5C	C10	5'-GGUGGAGCCCCAGGGCCUGGG-3'	........(((((...))))) ( -5.70)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038;31061524	21	chr9:133469072-133469092	CACFD1	HGNC:1365	ENSG00000160325	GGUGGAGCCCCAGGGCCUGGG
hsa_m5C_4176	chr9	133469081	133469082	+	ENST00000540581	C1175	m5C	C11	5'-GGUGGAGCCCCAGGGCCUGGG-3'	........(((((...))))) ( -5.70)	loop	mRNA	HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;38168991	21	chr9:133469072-133469092	CACFD1	HGNC:1365	ENSG00000160325	GGUGGAGCCCCAGGGCCUGGG
hsa_m5C_4177	chr16	88703060	88703061	-	ENST00000541206	C557	m5C	C5	5'-GGUGCGUGGUGGGG-3'	NA	loop	mRNA	spleen	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	14	chr16:88703052-88703065	RNF166	HGNC:28856	ENSG00000158717	GGUGCGUGGUGGGG
hsa_m5C_4178	chr19	44954697	44954698	+	ENST00000541297	C108	m5C	C6	5'-GGAUGCGAGGUUUGGACCACUGAGG-3'	........(((....)))....... ( -1.60)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr19:44954693-44954717	CLPTM1	HGNC:2087	ENSG00000104853	GGAUGCGAGGUUUGGACCACUGAGG
hsa_m5C_4179	chr1	155204913	155204914	-	ENST00000541576	C692	m5C	C15	5'-GGGUGGGUCCAUGGCCCGGG-3'	...((((((...)))))).. ( -6.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	20	chr1:155204909-155204928	THBS3	HGNC:11787	ENSG00000169231	GGGUGGGUCCAUGGCCCGGG
hsa_m5C_4180	chr1	155204912	155204913	-	ENST00000541576	C693	m5C	C16	5'-GGGUGGGUCCAUGGCCCGGG-3'	...((((((...)))))).. ( -6.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr1:155204909-155204928	THBS3	HGNC:11787	ENSG00000169231	GGGUGGGUCCAUGGCCCGGG
hsa_m5C_4181	chr1	155204911	155204912	-	ENST00000541576	C694	m5C	C17	5'-GGGUGGGUCCAUGGCCCGGG-3'	...((((((...)))))).. ( -6.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	20	chr1:155204909-155204928	THBS3	HGNC:11787	ENSG00000169231	GGGUGGGUCCAUGGCCCGGG
hsa_m5C_4182	chr21	33479852	33479853	-	ENST00000542230	C122	m5C	C9	5'-GGCGUGGGCGUUUGAGGAAGCUGG^G-3'	.((....))((((....)))).... ( -3.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chr21:33468926-33468926;33479838-33479861	TMEM50B	HGNC:1280	ENSG00000142188	GGCGUGGGCGUUUGAGGAAGCUGGG
hsa_m5C_4183	chr1	21597111	21597112	-	ENST00000542643	C2536	m5C	C24	5'-GGGCUGUCUCUGCAGGGCAGAGCCGUCCAGACCUGGGAUCAGGG-3'	((((...((((((...))))))..))))...((((....)))). (-18.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	44	chr1:21597092-21597135	RAP1GAP	HGNC:9858	ENSG00000076864	GGGCUGUCUCUGCAGGGCAGAGCCGUCCAGACCUGGGAUCAGGG
hsa_m5C_4184	chr12	122929252	122929253	-	ENST00000542678	C5798	m5C	C19	5'-GGGGAGUGAGGGGCUGGCCAGGUCUGGAGGGGCCUCAGGGG-3'	.........((((((..(((....)))...))))))..... (-11.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	41	chr12:122929231-122929271	ABCB9	HGNC:50	ENSG00000150967	GGGGAGUGAGGGGCUGGCCAGGUCUGGAGGGGCCUCAGGGG
hsa_m5C_4185	chr4	1983279	1983280	-	ENST00000542778	C1902	m5C	C7	5'-GGGGGUCCACGGGACGAUGG-3'	....((((...))))..... ( -4.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	20	chr4:1983267-1983286	NELFA	HGNC:12768	ENSG00000185049	GGGGGUCCACGGGACGAUGG
hsa_m5C_4186	chr12	31083969	31083970	+	ENST00000542838	C538	m5C	C5	5'-GGGGCUGCAGGCACCCCGAGG-3'	((((.((....)))))).... ( -7.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr12:31083966-31083986	DDX11	HGNC:2736	ENSG00000013573	GGGGCUGCAGGCACCCCGAGG
hsa_m5C_4187	chr16	30652820	30652821	+	ENST00000542965	C749	m5C	C7	5'-GGCAGGCCGGGUGG-3'	((....))...... ( -0.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	14	chr16:30652815-30652828	PRR14	HGNC:28458	ENSG00000156858	GGCAGGCCGGGUGG
hsa_m5C_4188	chr19	55642632	55642633	+	ENST00000543039	C871	m5C	C3	5'-GGCGGCGGGG-3'	NA	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	10	chr19:55642631-55642640	ZNF580	HGNC:29473	ENSG00000213015	GGCGGCGGGG
hsa_m5C_4189	chr19	55642635	55642636	+	ENST00000543039	C874	m5C	C6	5'-GGCGGCGGGG-3'	NA	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	10	chr19:55642631-55642640	ZNF580	HGNC:29473	ENSG00000213015	GGCGGCGGGG
hsa_m5C_4190	chr12	123661412	123661413	+	ENST00000543341	C2136	m5C	C12	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr12:123661402-123661416	GTF2H3	HGNC:4657	ENSG00000111358	GGAGGCCGAGGCAGG
hsa_m5C_4191	chr12	122981784	122981785	+	ENST00000543566	C1015	m5C	C3	5'-GGCAAGGAGAAGGCGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	16	chr12:122981783-122981798	ARL6IP4	HGNC:18076	ENSG00000182196	GGCAAGGAGAAGGCGG
hsa_m5C_4192	chr12	122981710	122981711	+	ENST00000543566	C941	m5C	C4	5'-GGCCGGAAGAAGCGGGG-3'	..(((.......))).. ( -3.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	17	chr12:122981708-122981724	ARL6IP4	HGNC:18076	ENSG00000182196	GGCCGGAAGAAGCGGGG
hsa_m5C_4193	chr12	122981719	122981720	+	ENST00000543566	C950	m5C	C13	5'-GGCCGGAAGAAGCGGGG-3'	..(((.......))).. ( -3.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	17	chr12:122981708-122981724	ARL6IP4	HGNC:18076	ENSG00000182196	GGCCGGAAGAAGCGGGG
hsa_m5C_4194	chr12	122981193	122981194	+	ENST00000543566	C752	m5C	C6	5'-GGGGACGGGGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	11	chr12:122981189-122981199	ARL6IP4	HGNC:18076	ENSG00000182196	GGGGACGGGGG
hsa_m5C_4195	chr17	59210312	59210313	+	ENST00000543872	C526	m5C	C7	5'-GGGGAUCCAGGACCUGG-3'	......((((...)))) ( -2.20)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	17	chr17:59210307-59210323	SMG8	HGNC:25551	ENSG00000167447	GGGGAUCCAGGACCUGG
hsa_m5C_4196	chr19	17727366	17727367	+	ENST00000544059	C2140	m5C	C4	5'-GGGCGGGGAGGCCGGG-3'	.(((......)))... ( -5.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr19:17727364-17727379	MAP1S	HGNC:15715	ENSG00000130479	GGGCGGGGAGGCCGGG
hsa_m5C_4197	chr4	87114938	87114939	+	ENST00000544085	C2740	m5C	C16	5'-GGACAAUGUGGAGGACAGG-3'	......(((.....))).. ( -0.40)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr4:87114924-87114942	AFF1	HGNC:7135	ENSG00000172493	GGACAAUGUGGAGGACAGG
hsa_m5C_4198	chr4	87007142	87007143	+	ENST00000544085	C391	m5C	C19	5'-GGAUUCGGACGCGGCGCUCCCCGG-3'	((....(((.((...))))))).. ( -3.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr4:87007125-87007148	AFF1	HGNC:7135	ENSG00000172493	GGAUUCGGACGCGGCGCUCCCCGG
hsa_m5C_4199	chr19	34172632	34172633	+	ENST00000544216	C130	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database;RMVar database	28418038;22344696	11	chr19:34172628-34172638	LSM14A	HGNC:24489	ENSG00000257103	GGCGGCGGCGG
hsa_m5C_4200	chr19	34172635	34172636	+	ENST00000544216	C133	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038;22344696	11	chr19:34172628-34172638	LSM14A	HGNC:24489	ENSG00000257103	GGCGGCGGCGG
hsa_m5C_4201	chr10	17235386	17235387	+	ENST00000544301	C1658	m5C	C16	5'-GGAAGGCGAGGAGAGCAG^G-3'	.....((.......))... ( -1.10)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038;22344696	19	chr10:17235372-17235389;17235846-17235846	VIM	HGNC:12692	ENSG00000026025	GGAAGGCGAGGAGAGCAGG
hsa_m5C_4202	chr10	17229653	17229654	+	ENST00000544301	C663	m5C	C7	5'-GGGGUGCGGCUCCUGCAGG-3'	(((((...)))))...... ( -4.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	19	chr10:17229648-17229666	VIM	HGNC:12692	ENSG00000026025	GGGGUGCGGCUCCUGCAGG
hsa_m5C_4203	chr10	17229656	17229657	+	ENST00000544301	C666	m5C	C10	5'-GGGGUGCGGCUCCUGCAGG-3'	(((((...)))))...... ( -4.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	19	chr10:17229648-17229666	VIM	HGNC:12692	ENSG00000026025	GGGGUGCGGCUCCUGCAGG
hsa_m5C_4204	chr10	17229658	17229659	+	ENST00000544301	C668	m5C	C12	5'-GGGGUGCGGCUCCUGCAGG-3'	(((((...)))))...... ( -4.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	19	chr10:17229648-17229666	VIM	HGNC:12692	ENSG00000026025	GGGGUGCGGCUCCUGCAGG
hsa_m5C_4205	chr10	17229659	17229660	+	ENST00000544301	C669	m5C	C13	5'-GGGGUGCGGCUCCUGCAGG-3'	(((((...)))))...... ( -4.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	19	chr10:17229648-17229666	VIM	HGNC:12692	ENSG00000026025	GGGGUGCGGCUCCUGCAGG
hsa_m5C_4206	chr22	29046790	29046791	+	ENST00000544604	C1015	m5C	C5	5'-GGGGCGCCGGGAGGGGAGCUGUGGG-3'	..(((.((......)).)))..... ( -6.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;rG4-seq:(High)	RMVar database	28418038	25	chr22:29046787-29046811	ZNRF3	HGNC:18126	ENSG00000183579	GGGGCGCCGGGAGGGGAGCUGUGGG
hsa_m5C_4207	chr22	29046792	29046793	+	ENST00000544604	C1017	m5C	C7	5'-GGGGCGCCGGGAGGGGAGCUGUGGG-3'	..(((.((......)).)))..... ( -6.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;rG4-seq:(High)	RMVar database	28418038	25	chr22:29046787-29046811	ZNRF3	HGNC:18126	ENSG00000183579	GGGGCGCCGGGAGGGGAGCUGUGGG
hsa_m5C_4208	chr12	6944048	6944049	+	ENST00000544681	C233	m5C	C13	5'-GGGCGUUGGGAACGGUUGUAGG-3'	((.((((...)))).))..... ( -1.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	22	chr12:6944037-6944058	C12orf57	HGNC:29521	ENSG00000111678	GGGCGUUGGGAACGGUUGUAGG
hsa_m5C_4209	chr12	123937178	123937179	-	ENST00000545135	C4121	m5C	C8	5'-GGGGUGGCACAUCGG-3'	..((((...)))).. ( -1.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr12:123937172-123937186	CCDC92	HGNC:29563	ENSG00000119242	GGGGUGGCACAUCGG
hsa_m5C_4210	chr12	67315219	67315220	+	ENST00000545606	C6443	m5C	C8	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr12:67315213-67315227	CAND1	HGNC:30688	ENSG00000111530	GGGAGGCCGAGGCGG
hsa_m5C_4211	chr12	67315224	67315225	+	ENST00000545606	C6448	m5C	C13	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr12:67315213-67315227	CAND1	HGNC:30688	ENSG00000111530	GGGAGGCCGAGGCGG
hsa_m5C_4212	chr14	64448219	64448220	+	ENST00000545908	C2579	m5C	C8	5'-GGAG^AACCUGGAGCUGGUUGAAAAAGG-3'	....((((.......))))........ ( -3.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr14:64444731-64444734;64448217-64448239	MTHFD1	HGNC:7432	ENSG00000100714	GGAGAACCUGGAGCUGGUUGAAAAAGG
hsa_m5C_4213	chr14	64442396	64442397	+	ENST00000545908	C2528	m5C	C9	5'-GGGGCGGCCCCACG^G-3'	((((...)))).... ( -6.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr14:64442389-64442402;64444693-64444693	MTHFD1	HGNC:7432	ENSG00000100714	GGGGCGGCCCCACGG
hsa_m5C_4214	chr11	66368587	66368588	-	ENST00000546034	C724	m5C	C4	5'-GGCCAGGGCCUGGCUGG-3'	((((((...)))))).. ( -7.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr11:66368575-66368591	SLC29A2	HGNC:11004	ENSG00000174669	GGCCAGGGCCUGGCUGG
hsa_m5C_4215	chr12	112022377	112022378	+	ENST00000546477	C908	m5C	C4	5'-GGGCCUCUGGUGUGGAGGCCCGCCAGG-3'	((((((((.....))))))))...... (-16.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr12:112022375-112022401	ERP29	HGNC:13799	ENSG00000089248	GGGCCUCUGGUGUGGAGGCCCGCCAGG
hsa_m5C_4216	chr12	112022380	112022381	+	ENST00000546477	C911	m5C	C7	5'-GGGCCUCUGGUGUGGAGGCCCGCCAGG-3'	((((((((.....))))))))...... (-16.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr12:112022375-112022401	ERP29	HGNC:13799	ENSG00000089248	GGGCCUCUGGUGUGGAGGCCCGCCAGG
hsa_m5C_4217	chr12	120444903	120444904	-	ENST00000546954	C211	m5C	C19	5'-GGACUGGAGUUCAUGGGCCAUGG-3'	((((....))))........... ( -2.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr12:120444900-120444922	TRIAP1	HGNC:26937	ENSG00000170855	GGACUGGAGUUCAUGGGCCAUGG
hsa_m5C_4218	chr12	119989481	119989482	+	ENST00000548673	C247	m5C	C3	5'-GGCAGCGGCAACAGGGCGG-3'	.......((......)).. ( -1.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr12:119989480-119989498	BICDL1	HGNC:28095	ENSG00000135127	GGCAGCGGCAACAGGGCGG
hsa_m5C_4219	chr12	119989853	119989854	+	ENST00000548673	C619	m5C	C26	5'-GGGCCGGGCCGCACCGCUGCGGGCUCCGCGCGCGCGGG-3'	.(((...)))...((((.(((.((...)).))))))). (-18.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	38	chr12:119989829-119989866	BICDL1	HGNC:28095	ENSG00000135127	GGGCCGGGCCGCACCGCUGCGGGCUCCGCGCGCGCGGG
hsa_m5C_4220	chr12	119989858	119989859	+	ENST00000548673	C624	m5C	C31	5'-GGGCCGGGCCGCACCGCUGCGGGCUCCGCGCGCGCGGG-3'	.(((...)))...((((.(((.((...)).))))))). (-18.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	38	chr12:119989829-119989866	BICDL1	HGNC:28095	ENSG00000135127	GGGCCGGGCCGCACCGCUGCGGGCUCCGCGCGCGCGGG
hsa_m5C_4221	chr12	98516029	98516030	-	ENST00000548760	C393	m5C	C9	5'-GGUGCCGGCGGGGAGCGG-3'	.((.((.....)).)).. ( -3.10)	loop	lncRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	18	chr12:98516021-98516038	TMPO-AS1	HGNC:44158	ENSG00000257167	GGUGCCGGCGGGGAGCGG
hsa_m5C_4222	chr16	655346	655347	+	ENST00000549091	C1689	m5C	C23	5'-GGGCAGUGUGCGGCUCUGGCGGCUGCGUGG-3'	..(((((.(((.......)))))))).... ( -9.60)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr16:655325-655354	WDR90	HGNC:26960	ENSG00000161996	GGGCAGUGUGCGGCUCUGGCGGCUGCGUGG
hsa_m5C_4223	chr12	55725893	55725894	-	ENST00000549117	C1007	m5C	C4	5'-G^GGCUGUGUGGAGAAGAUUGGGGGCUGG-3'	.((((.................)))).. ( -1.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	28	chr12:55725870-55725896;55726121-55726121	CD63	HGNC:1692	ENSG00000135404	GGGCUGUGUGGAGAAGAUUGGGGGCUGG
hsa_m5C_4224	chr14	104995065	104995066	+	ENST00000549240	C2367	m5C	C11	5'-GGGGGGUUGCCCAGGGAUGGACCCUGGG-3'	.........(((((((.....))))))) (-13.00)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr14:104995056-104995083	CLBA1	HGNC:20126	ENSG00000140104	GGGGGGUUGCCCAGGGAUGGACCCUGGG
hsa_m5C_4225	chr12	101697688	101697689	+	ENST00000549872	C18	m5C	C11	5'-GGGGCUGGGGCCCCGGCAGCCGG-3'	(((((....)))))......... (-10.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr12:101697679-101697701	CHPT1	HGNC:17852	ENSG00000111666	GGGGCUGGGGCCCCGGCAGCCGG
hsa_m5C_4226	chr12	56602804	56602805	-	ENST00000549884	C3536	m5C	C3	5'-GGCGGUCUCCCUGGGUCAGG-3'	.........((((...)))) ( -2.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr12:56602788-56602807	BAZ2A	HGNC:962	ENSG00000076108	GGCGGUCUCCCUGGGUCAGG
hsa_m5C_4227	chr12	111842409	111842410	+	ENST00000550735	C183	m5C	C24	5'-GGCCCUUGCACGGCGCCCCGGGUCGAGG-3'	(((((..((.....))...))))).... ( -8.90)	loop	mRNA	293T;HeLa	UBS-seq:(High);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;31061524;38168991	28	chr12:111842387-111842414	MAPKAPK5	HGNC:6889	ENSG00000089022	GGCCCUUGCACGGCGCCCCGGGUCGAGG
hsa_m5C_4228	chr19	48617850	48617851	-	ENST00000550973	C595	m5C	C4	5'-GGACCGAAAGGUUCGGCGCAAGG-3'	(((((....)))))......... ( -6.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr19:48617832-48617854	RPL18	HGNC:10310	ENSG00000063177	GGACCGAAAGGUUCGGCGCAAGG
hsa_m5C_4229	chr19	48616783	48616784	-	ENST00000550973	C804	m5C	C3	5'-GGCCGUGGUUGUGGGG-3'	..(((......))).. ( -0.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	16	chr19:48616771-48616786	RPL18	HGNC:10310	ENSG00000063177	GGCCGUGGUUGUGGGG
hsa_m5C_4230	chr19	48618724	48618725	-	ENST00000550973	C403	m5C	C7	5'-GGGGACCAGGCAGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr19:48618718-48618731	RPL18	HGNC:10310	ENSG00000063177	GGGGACCAGGCAGG
hsa_m5C_4231	chr12	49330936	49330937	+	ENST00000551245	C2203	m5C	C4	5'-GGCCAGGCAGGUAAGG-3'	.(((.....))).... ( -2.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr12:49330934-49330949	TROAP	HGNC:12327	ENSG00000135451	GGCCAGGCAGGUAAGG
hsa_m5C_4232	chr12	49329914	49329915	+	ENST00000551245	C1334	m5C	C16	5'-GGUCACUGGAGGGUUCUGG-3'	.....(((((....))))) ( -1.70)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr12:49329900-49329918	TROAP	HGNC:12327	ENSG00000135451	GGUCACUGGAGGGUUCUGG
hsa_m5C_4233	chr12	56157893	56157894	+	ENST00000553066	C1217	m5C	C6	5'-GGGGUCCGGACACUGG-3'	.....((((...)))) ( -1.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	16	chr12:56157889-56157904	MYL6B	HGNC:29823	ENSG00000196465	GGGGUCCGGACACUGG
hsa_m5C_4234	chr12	56157894	56157895	+	ENST00000553066	C1218	m5C	C7	5'-GGGGUCCGGACACUGG-3'	.....((((...)))) ( -1.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	16	chr12:56157889-56157904	MYL6B	HGNC:29823	ENSG00000196465	GGGGUCCGGACACUGG
hsa_m5C_4235	chr12	49527157	49527158	+	ENST00000553127	C3054	m5C	C6	5'-GGAGGCGGAGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	22344696	11	chr12:49527153-49527163	SPATS2	HGNC:18650	ENSG00000123352	GGAGGCGGAGG
hsa_m5C_4236	chr14	24437615	24437616	+	ENST00000553935	C2551	m5C	C11	5'-GGGUGGAGGGCAGGGUGGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	19	chr14:24437606-24437624	KHNYN	HGNC:20166	ENSG00000100441	GGGUGGAGGGCAGGGUGGG
hsa_m5C_4237	chr14	20343197	20343198	-	ENST00000554988	C488	m5C	C10	5'-GGGGAGGGGCCCGG-3'	(((......))).. ( -5.10)	loop	lncRNA	HeLa	Aza-IP:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	23604283	14	chr14:20343194-20343207	NA	NA	ENSG00000259001	GGGGAGGGGCCCGG
hsa_m5C_4238	chr14	20343196	20343197	-	ENST00000554988	C489	m5C	C11	5'-GGGGAGGGGCCCGG-3'	(((......))).. ( -5.10)	loop	lncRNA	HeLa	Aza-IP:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	23604283	14	chr14:20343194-20343207	NA	NA	ENSG00000259001	GGGGAGGGGCCCGG
hsa_m5C_4239	chr14	20343195	20343196	-	ENST00000554988	C490	m5C	C12	5'-GGGGAGGGGCCCGG-3'	(((......))).. ( -5.10)	loop	lncRNA	HeLa	Aza-IP:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	23604283	14	chr14:20343194-20343207	NA	NA	ENSG00000259001	GGGGAGGGGCCCGG
hsa_m5C_4240	chr17	51166834	51166835	+	ENST00000555572	C601	m5C	C14	5'-GGCAG^GACCAUGGCCAACCUGG-3'	(((.........)))....... ( -3.40)	loop	mRNA	Different_Methylation_MDA468-MCF10A	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	30009162	22	chr17:51161268-51161272;51166827-51166843	NME1-NME2	HGNC:33531	ENSG00000011052	GGCAGGACCAUGGCCAACCUGG
hsa_m5C_4241	chr14	88469959	88469960	-	ENST00000556564	C3521	m5C	C18	5'-GGCAGAUGGUAUGGGAACAGGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr14:88469956-88469977	PTPN21	HGNC:9651	ENSG00000070778	GGCAGAUGGUAUGGGAACAGGG
hsa_m5C_4242	chr15	92882899	92882900	+	ENST00000557682	C194	m5C	C11	5'-GGCCGCGAGGCCCGCCGGCCGG-3'	(((((((.....)).))))).. (-11.90)	loop	lncRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr15:92882890-92882911	CHASERR	HGNC:48626	ENSG00000272888	GGCCGCGAGGCCCGCCGGCCGG
hsa_m5C_4243	chr15	92882900	92882901	+	ENST00000557682	C195	m5C	C12	5'-GGCCGCGAGGCCCGCCGGCCGG-3'	(((((((.....)).))))).. (-11.90)	loop	lncRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr15:92882890-92882911	CHASERR	HGNC:48626	ENSG00000272888	GGCCGCGAGGCCCGCCGGCCGG
hsa_m5C_4244	chr15	29054495	29054496	+	ENST00000558402	C1211	m5C	C16	5'-GGAGGCCAACGGGAACACCGG-3'	.........(((.....))). ( -4.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr15:29054481-29054501	APBA2	HGNC:579	ENSG00000034053	GGAGGCCAACGGGAACACCGG
hsa_m5C_4245	chr15	29054498	29054499	+	ENST00000558402	C1214	m5C	C19	5'-GGAGGCCAACGGGAACACCGG-3'	.........(((.....))). ( -4.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr15:29054481-29054501	APBA2	HGNC:579	ENSG00000034053	GGAGGCCAACGGGAACACCGG
hsa_m5C_4246	chr15	40767392	40767393	+	ENST00000558467	C470	m5C	C19	5'-GGCACCCCUGUGGAGGGGCUGCUGUGG-3'	(((((((((....))))).)))).... (-14.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	27	chr15:40767375-40767401	GCHFR	HGNC:4194	ENSG00000137880	GGCACCCCUGUGGAGGGGCUGCUGUGG
hsa_m5C_4247	chr15	40767585	40767586	+	ENST00000558467	C663	m5C	C11	5'-GGGCCUGGGCCGAGGGCCUUGUGUAGG-3'	((((((.......))))))........ ( -8.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	27	chr15:40767576-40767602	GCHFR	HGNC:4194	ENSG00000137880	GGGCCUGGGCCGAGGGCCUUGUGUAGG
hsa_m5C_4248	chr15	70097176	70097177	-	ENST00000558939	C1000	m5C	C8	5'-GGAGGGGCCCCCGGCCUCGG-3'	...((((((...)))))).. ( -9.60)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr15:70097165-70097184	TLE3	HGNC:11839	ENSG00000140332	GGAGGGGCCCCCGGCCUCGG
hsa_m5C_4249	chr15	70097175	70097176	-	ENST00000558939	C1001	m5C	C9	5'-GGAGGGGCCCCCGGCCUCGG-3'	...((((((...)))))).. ( -9.60)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr15:70097165-70097184	TLE3	HGNC:11839	ENSG00000140332	GGAGGGGCCCCCGGCCUCGG
hsa_m5C_4250	chr15	70097174	70097175	-	ENST00000558939	C1002	m5C	C10	5'-GGAGGGGCCCCCGGCCUCGG-3'	...((((((...)))))).. ( -9.60)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr15:70097165-70097184	TLE3	HGNC:11839	ENSG00000140332	GGAGGGGCCCCCGGCCUCGG
hsa_m5C_4251	chr15	70097173	70097174	-	ENST00000558939	C1003	m5C	C11	5'-GGAGGGGCCCCCGGCCUCGG-3'	...((((((...)))))).. ( -9.60)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr15:70097165-70097184	TLE3	HGNC:11839	ENSG00000140332	GGAGGGGCCCCCGGCCUCGG
hsa_m5C_4252	chr15	70097172	70097173	-	ENST00000558939	C1004	m5C	C12	5'-GGAGGGGCCCCCGGCCUCGG-3'	...((((((...)))))).. ( -9.60)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	20	chr15:70097165-70097184	TLE3	HGNC:11839	ENSG00000140332	GGAGGGGCCCCCGGCCUCGG
hsa_m5C_4253	chr15	90910161	90910162	+	ENST00000559717	C1596	m5C	C17	5'-GGAGCCAGGGGCCCGGCCUCCAGG-3'	((((((.((...)))).))))... ( -8.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr15:90910146-90910169	MAN2A2	HGNC:6825	ENSG00000196547	GGAGCCAGGGGCCCGGCCUCCAGG
hsa_m5C_4254	chr15	90910162	90910163	+	ENST00000559717	C1597	m5C	C18	5'-GGAGCCAGGGGCCCGGCCUCCAGG-3'	((((((.((...)))).))))... ( -8.90)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;31061524	24	chr15:90910146-90910169	MAN2A2	HGNC:6825	ENSG00000196547	GGAGCCAGGGGCCCGGCCUCCAGG
hsa_m5C_4255	chr15	85213631	85213632	+	ENST00000559989	C7517	m5C	C7	5'-GGGAGGCCAAGGUGG-3'	((....))....... ( -1.60)	loop	lncRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr15:85213626-85213640	NA	NA	ENSG00000291211	GGGAGGCCAAGGUGG
hsa_m5C_4256	chr16	57759151	57759152	-	ENST00000561524	C2829	m5C	C4	5'-GG^CCUGACGGCUGGGG-3'	((((....)))).... ( -4.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr16:57759140-57759153;57759728-57759729	KIFC3	HGNC:6326	ENSG00000140859	GGCCUGACGGCUGGGG
hsa_m5C_4257	chr16	57759144	57759145	-	ENST00000561524	C2836	m5C	C11	5'-GG^CCUGACGGCUGGGG-3'	((((....)))).... ( -4.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr16:57759140-57759153;57759728-57759729	KIFC3	HGNC:6326	ENSG00000140859	GGCCUGACGGCUGGGG
hsa_m5C_4258	chr16	50153761	50153762	+	ENST00000561678	C457	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31061524	11	chr16:50153760-50153770	TENT4B	HGNC:30758	ENSG00000121274	GGCGGCGGCGG
hsa_m5C_4259	chr16	50153596	50153597	+	ENST00000561678	C292	m5C	C17	5'-GGGCGGCCGGGAGGGGCGGGGG-3'	...((.((.....)).)).... ( -6.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	22	chr16:50153581-50153602	TENT4B	HGNC:30758	ENSG00000121274	GGGCGGCCGGGAGGGGCGGGGG
hsa_m5C_4260	chr16	2001647	2001648	-	ENST00000562103	C1022	m5C	C4	5'-GGGCCGAGUGGCCCGGGCUGGCACUCG-3'	(((((....)))))(((......))). (-11.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr16:2001625-2001651	ZNF598	HGNC:28079	ENSG00000167962	GGGCCGAGUGGCCCGGGCUGGCACUCG
hsa_m5C_4261	chr16	2001646	2001647	-	ENST00000562103	C1023	m5C	C5	5'-GGGCCGAGUGGCCCGGGCUGGCACUCG-3'	(((((....)))))(((......))). (-11.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr16:2001625-2001651	ZNF598	HGNC:28079	ENSG00000167962	GGGCCGAGUGGCCCGGGCUGGCACUCG
hsa_m5C_4262	chr16	2001639	2001640	-	ENST00000562103	C1030	m5C	C12	5'-GGGCCGAGUGGCCCGGGCUGGCACUCG-3'	(((((....)))))(((......))). (-11.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr16:2001625-2001651	ZNF598	HGNC:28079	ENSG00000167962	GGGCCGAGUGGCCCGGGCUGGCACUCG
hsa_m5C_4263	chr16	2001638	2001639	-	ENST00000562103	C1031	m5C	C13	5'-GGGCCGAGUGGCCCGGGCUGGCACUCG-3'	(((((....)))))(((......))). (-11.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr16:2001625-2001651	ZNF598	HGNC:28079	ENSG00000167962	GGGCCGAGUGGCCCGGGCUGGCACUCG
hsa_m5C_4264	chr16	2001637	2001638	-	ENST00000562103	C1032	m5C	C14	5'-GGGCCGAGUGGCCCGGGCUGGCACUCG-3'	(((((....)))))(((......))). (-11.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr16:2001625-2001651	ZNF598	HGNC:28079	ENSG00000167962	GGGCCGAGUGGCCCGGGCUGGCACUCG
hsa_m5C_4265	chr16	29810103	29810104	+	ENST00000562594	C91	m5C	C6	5'-GGCGGCGGCAGCGG-3'	....((....)).. ( -1.70)	loop	lncRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr16:29810099-29810112	NA	NA	ENSG00000280607	GGCGGCGGCAGCGG
hsa_m5C_4266	chr16	29810106	29810107	+	ENST00000562594	C94	m5C	C9	5'-GGCGGCGGCAGCGG-3'	....((....)).. ( -1.70)	loop	lncRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038;22344696	14	chr16:29810099-29810112	NA	NA	ENSG00000280607	GGCGGCGGCAGCGG
hsa_m5C_4267	chr16	29810109	29810110	+	ENST00000562594	C97	m5C	C12	5'-GGCGGCGGCAGCGG-3'	....((....)).. ( -1.70)	loop	lncRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr16:29810099-29810112	NA	NA	ENSG00000280607	GGCGGCGGCAGCGG
hsa_m5C_4268	chr16	57664086	57664087	+	ENST00000562631	C2777	m5C	C28	5'-GGGCGAAUGGGGCCCAGGGCAGACCUUCAGGG-3'	((((.......))))(((.....)))...... (-10.40)	loop	mRNA	frontal_cortex,lung,Testis,HeLa,T24;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;38168991	32	chr16:57664060-57664091	ADGRG1	HGNC:4512	ENSG00000205336	GGGCGAAUGGGGCCCAGGGCAGACCUUCAGGG
hsa_m5C_4269	chrX	136874189	136874190	-	ENST00000562646	C1916	m5C	C9	5'-GGUGGUGGCCGUGG-3'	(((....))).... ( -3.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	14	chrX:136874185-136874198	RBMX	HGNC:9910	ENSG00000147274	GGUGGUGGCCGUGG
hsa_m5C_4270	chr16	30570028	30570029	-	ENST00000563276	C1135	m5C	C6	5'-GGGGGCGGCGGGGCCGGAGGCCUGGGAUCCGG-3'	.....(((..(((((...))))).....))). (-10.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	32	chr16:30570003-30570034	ZNF688	HGNC:30489	ENSG00000229809	GGGGGCGGCGGGGCCGGAGGCCUGGGAUCCGG
hsa_m5C_4271	chr16	30570025	30570026	-	ENST00000563276	C1138	m5C	C9	5'-GGGGGCGGCGGGGCCGGAGGCCUGGGAUCCGG-3'	.....(((..(((((...))))).....))). (-10.20)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	32	chr16:30570003-30570034	ZNF688	HGNC:30489	ENSG00000229809	GGGGGCGGCGGGGCCGGAGGCCUGGGAUCCGG
hsa_m5C_4272	chr16	30570020	30570021	-	ENST00000563276	C1143	m5C	C14	5'-GGGGGCGGCGGGGCCGGAGGCCUGGGAUCCGG-3'	.....(((..(((((...))))).....))). (-10.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	32	chr16:30570003-30570034	ZNF688	HGNC:30489	ENSG00000229809	GGGGGCGGCGGGGCCGGAGGCCUGGGAUCCGG
hsa_m5C_4273	chr16	30570019	30570020	-	ENST00000563276	C1144	m5C	C15	5'-GGGGGCGGCGGGGCCGGAGGCCUGGGAUCCGG-3'	.....(((..(((((...))))).....))). (-10.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	32	chr16:30570003-30570034	ZNF688	HGNC:30489	ENSG00000229809	GGGGGCGGCGGGGCCGGAGGCCUGGGAUCCGG
hsa_m5C_4274	chr3	51391310	51391311	+	ENST00000563281	C27	m5C	C3	5'-GGCGGCGCCGGGG-3'	(((...))).... ( -3.00)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	13	chr3:51391309-51391321	RBM15B	HGNC:24303	ENSG00000259956	GGCGGCGCCGGGG
hsa_m5C_4275	chr3	51391315	51391316	+	ENST00000563281	C32	m5C	C8	5'-GGCGGCGCCGGGG-3'	(((...))).... ( -3.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	13	chr3:51391309-51391321	RBM15B	HGNC:24303	ENSG00000259956	GGCGGCGCCGGGG
hsa_m5C_4276	chr3	51391493	51391494	+	ENST00000563281	C210	m5C	C13	5'-GGGAGGCGGAGGCGGGCGGGCGGCGGG-3'	.....((....))..((.....))... ( -3.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database	28418038	27	chr3:51391482-51391508	RBM15B	HGNC:24303	ENSG00000259956	GGGAGGCGGAGGCGGGCGGGCGGCGGG
hsa_m5C_4277	chr3	51391497	51391498	+	ENST00000563281	C214	m5C	C17	5'-GGGAGGCGGAGGCGGGCGGGCGGCGGG-3'	.....((....))..((.....))... ( -3.50)	loop	mRNA	T24,HeLa;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;rG4-seq:(High)	RMBase database;RMVar database	28418038	27	chr3:51391482-51391508	RBM15B	HGNC:24303	ENSG00000259956	GGGAGGCGGAGGCGGGCGGGCGGCGGG
hsa_m5C_4278	chr3	51391501	51391502	+	ENST00000563281	C218	m5C	C21	5'-GGGAGGCGGAGGCGGGCGGGCGGCGGG-3'	.....((....))..((.....))... ( -3.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database	28418038	27	chr3:51391482-51391508	RBM15B	HGNC:24303	ENSG00000259956	GGGAGGCGGAGGCGGGCGGGCGGCGGG
hsa_m5C_4279	chr3	51391504	51391505	+	ENST00000563281	C221	m5C	C24	5'-GGGAGGCGGAGGCGGGCGGGCGGCGGG-3'	.....((....))..((.....))... ( -3.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database	28418038	27	chr3:51391482-51391508	RBM15B	HGNC:24303	ENSG00000259956	GGGAGGCGGAGGCGGGCGGGCGGCGGG
hsa_m5C_4280	chr15	55588187	55588188	-	ENST00000563719	C158	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969	11	chr15:55588186-55588196	PYGO1	HGNC:30256	ENSG00000171016	GGCGGCGGCGG
hsa_m5C_4281	chr16	67175184	67175185	+	ENST00000564053	C1292	m5C	C8	5'-GGAGGGUCGGACGG-3'	NA	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;RMVar database	28418038	14	chr16:67175178-67175191	NOL3	HGNC:7869	ENSG00000140939	GGAGGGUCGGACGG
hsa_m5C_4282	chr16	67174809	67174810	+	ENST00000564053	C1019	m5C	C6	5'-GGCCUCUAAAGAGGCUGAACCGGAGCCGG-3'	((((((....))))))...(((....))) (-11.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	29	chr16:67174805-67174833	NOL3	HGNC:7869	ENSG00000140939	GGCCUCUAAAGAGGCUGAACCGGAGCCGG
hsa_m5C_4283	chrX	108734416	108734417	-	ENST00000564206	C1993	m5C	C8	5'-GGAGGAACUGGUGGAAAAGGGAAGUCUGG-3'	(((....((........)).....))).. ( -1.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	29	chrX:108734396-108734424	IRS4	HGNC:6128	ENSG00000133124	GGAGGAACUGGUGGAAAAGGGAAGUCUGG
hsa_m5C_4284	chr16	31457580	31457581	-	ENST00000564629	C2156	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	lncRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr16:31457572-31457586	NA	NA	ENSG00000260267	GGAGGCUGAGGCAGG
hsa_m5C_4285	chr16	31457574	31457575	-	ENST00000564629	C2162	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	lncRNA	HeLa,rip antibody: ALYREF;MRC-5;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	15	chr16:31457572-31457586	NA	NA	ENSG00000260267	GGAGGCUGAGGCAGG
hsa_m5C_4286	chr16	75599199	75599200	-	ENST00000564657	C3425	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	spleen	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	NA	15	chr16:75599191-75599205	ADAT1	HGNC:228	ENSG00000065457	GGAGGCUGAGGCAGG
hsa_m5C_4287	chr16	84648553	84648554	+	ENST00000564996	C44	m5C	C3	5'-GGCUGGCCGGGGG-3'	((....))..... ( -0.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	22344696	13	chr16:84648552-84648564	KLHL36	HGNC:17844	ENSG00000135686	GGCUGGCCGGGGG
hsa_m5C_4288	chr16	84648557	84648558	+	ENST00000564996	C48	m5C	C7	5'-GGCUGGCCGGGGG-3'	((....))..... ( -0.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	13	chr16:84648552-84648564	KLHL36	HGNC:17844	ENSG00000135686	GGCUGGCCGGGGG
hsa_m5C_4289	chr16	84648558	84648559	+	ENST00000564996	C49	m5C	C8	5'-GGCUGGCCGGGGG-3'	((....))..... ( -0.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	13	chr16:84648552-84648564	KLHL36	HGNC:17844	ENSG00000135686	GGCUGGCCGGGGG
hsa_m5C_4290	chr16	68070137	68070138	+	ENST00000565263	C725	m5C	C10	5'-GGGAG^GAAGCGGGAGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr16:68066632-68066636;68070134-68070144	DUS2	HGNC:26014	ENSG00000167264	GGGAGGAAGCGGGAGG
hsa_m5C_4291	chr2	36355057	36355058	-	ENST00000565283	C414	m5C	C17	5'-GGGAGCUGGGGAGGACCGUUGG-3'	.((..((....))..))..... ( -3.10)	loop	lncRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	22	chr2:36355053-36355074	CRIM1-DT	HGNC:54057	ENSG00000260025	GGGAGCUGGGGAGGACCGUUGG
hsa_m5C_4292	chr16	976834	976835	-	ENST00000565467	C2652	m5C	C11	5'-GGAAAGGAUUCAGGGAGCAGG-3'	NA	loop	lncRNA	spleen,Testis;spleen	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	21	chr16:976825-976845	CEROX1	HGNC:53928	ENSG00000260807	GGAAAGGAUUCAGGGAGCAGG
hsa_m5C_4293	chr20	36047251	36047252	-	ENST00000565493	C3767	m5C	C7	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	lncRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr20:36047244-36047258	NORAD	HGNC:44311	ENSG00000260032	GGAGGCCGAGGCAGG
hsa_m5C_4294	chr20	36050857	36050858	-	ENST00000565493	C161	m5C	C25	5'-GGGCCGGCGGGUGAACUGGGGGGCCCCGGG-3'	(((((..(((.....)))...))))).... (-13.20)	loop	lncRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr20:36050853-36050882	NORAD	HGNC:44311	ENSG00000260032	GGGCCGGCGGGUGAACUGGGGGGCCCCGGG
hsa_m5C_4295	chr16	88437223	88437224	+	ENST00000565624	C10241	m5C	C7	5'-GGGAGCCCGGGAGACCCGUGGGGGCAAGAGGG-3'	....(((((((...)))....))))....... ( -9.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	32	chr16:88437218-88437249	ZNF469	HGNC:23216	ENSG00000225614	GGGAGCCCGGGAGACCCGUGGGGGCAAGAGGG
hsa_m5C_4296	chr16	88429001	88429002	+	ENST00000565624	C2019	m5C	C7	5'-GGGGCCCCGAGUGGCAGGGGGGCAGCCAAGG-3'	((.(((((..........)))))..)).... (-13.10)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	31	chr16:88428996-88429026	ZNF469	HGNC:23216	ENSG00000225614	GGGGCCCCGAGUGGCAGGGGGGCAGCCAAGG
hsa_m5C_4297	chr16	88429002	88429003	+	ENST00000565624	C2020	m5C	C8	5'-GGGGCCCCGAGUGGCAGGGGGGCAGCCAAGG-3'	((.(((((..........)))))..)).... (-13.10)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	31	chr16:88428996-88429026	ZNF469	HGNC:23216	ENSG00000225614	GGGGCCCCGAGUGGCAGGGGGGCAGCCAAGG
hsa_m5C_4298	chr16	88429009	88429010	+	ENST00000565624	C2027	m5C	C15	5'-GGGGCCCCGAGUGGCAGGGGGGCAGCCAAGG-3'	((.(((((..........)))))..)).... (-13.10)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	31	chr16:88428996-88429026	ZNF469	HGNC:23216	ENSG00000225614	GGGGCCCCGAGUGGCAGGGGGGCAGCCAAGG
hsa_m5C_4299	chr16	2253309	2253310	-	ENST00000565678	C2118	m5C	C7	5'-GGUGGUCUUUCAGGUUAUCUUGG-3'	..........((((....)))). ( -2.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	23	chr16:2253294-2253316	RNPS1	HGNC:10080	ENSG00000205937	GGUGGUCUUUCAGGUUAUCUUGG
hsa_m5C_4300	chr16	12356277	12356278	+	ENST00000566228	C1971	m5C	C7	5'-GGGGACCG^GUGCCUGG-3'	(((........))).. ( -2.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr16:12356272-12356279;12398446-12398453	SNX29	HGNC:30542	ENSG00000048471	GGGGACCGGUGCCUGG
hsa_m5C_4301	chr16	85092859	85092860	+	ENST00000566428	C6402	m5C	C3	5'-GGCCAGGAACAGGAAUGUGUUGG-3'	..((((..(((....))).)))) ( -3.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr16:85092858-85092880	KIAA0513	HGNC:29058	ENSG00000135709	GGCCAGGAACAGGAAUGUGUUGG
hsa_m5C_4302	chr15	25088331	25088332	+	ENST00000567527	C672	m5C	C12	5'-GGGGUUCAGGGCCGCAAGG-3'	..((((...))))...... ( -2.00)	loop	lncRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr15:25088321-25088339	NA	NA	ENSG00000261069	GGGGUUCAGGGCCGCAAGG
hsa_m5C_4303	chr15	65593553	65593554	-	ENST00000567744	C1341	m5C	C17	5'-GGUGAUGAGGUGGGUACUGG-3'	NA	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	20	chr15:65593551-65593570	INTS14	HGNC:25372	ENSG00000138614	GGUGAUGAGGUGGGUACUGG
hsa_m5C_4304	chr16	715178	715179	+	ENST00000568223	C62	m5C	C17	5'-GGGCUUGGGGGCUUCGCCGGGGCCGGG-3'	.(((((.((.......)).)))))... (-11.80)	loop	mRNA	HeLa	m5C-RIP-seq:(Medium),RNA-BisSeq:(High);UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;38168991	28418038;38168991	27	chr16:715163-715189	METRN	HGNC:14151	ENSG00000103260	GGGCUUGGGGGCUUCGCCGGGGCCGGG
hsa_m5C_4305	chr16	67869549	67869550	+	ENST00000568233	C1333	m5C	C6	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr16:67869545-67869559	NUTF2	HGNC:13722	ENSG00000102898	GGAGGCCGAGGCAGG
hsa_m5C_4306	chr16	67869550	67869551	+	ENST00000568233	C1334	m5C	C7	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr16:67869545-67869559	NUTF2	HGNC:13722	ENSG00000102898	GGAGGCCGAGGCAGG
hsa_m5C_4307	chr16	67869555	67869556	+	ENST00000568233	C1339	m5C	C12	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr16:67869545-67869559	NUTF2	HGNC:13722	ENSG00000102898	GGAGGCCGAGGCAGG
hsa_m5C_4308	chr15	45198589	45198590	-	ENST00000568314	C550	m5C	C3	5'-GGCACGGCAAGGGG-3'	NA	loop	lncRNA	HeLa	Aza-IP:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	23604283	14	chr15:45198579-45198592	NA	NA	ENSG00000259932	GGCACGGCAAGGGG
hsa_m5C_4309	chr15	45198587	45198588	-	ENST00000568314	C552	m5C	C5	5'-GGCACGGCAAGGGG-3'	NA	loop	lncRNA	HeLa	Aza-IP:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	23604283	14	chr15:45198579-45198592	NA	NA	ENSG00000259932	GGCACGGCAAGGGG
hsa_m5C_4310	chr15	45198584	45198585	-	ENST00000568314	C555	m5C	C8	5'-GGCACGGCAAGGGG-3'	NA	loop	lncRNA	HeLa	Aza-IP:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	23604283	14	chr15:45198579-45198592	NA	NA	ENSG00000259932	GGCACGGCAAGGGG
hsa_m5C_4311	chr16	1778972	1778973	+	ENST00000568449	C4293	m5C	C13	5'-GGGGCCCCCAGGCAAGG-3'	...(((....))).... ( -3.50)	loop	mRNA	HeLa	BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	31061524	17	chr16:1778961-1778977	EME2	HGNC:27289	ENSG00000197774	GGGGCCCCCAGGCAAGG
hsa_m5C_4312	chr16	1976825	1976826	+	ENST00000568546	C1417	m5C	C14	5'-G^GCUGAAGGAGUCCUUCCUGGUGACAGG-3'	((((.....))))...((((....)))) ( -7.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr16:1976314-1976314;1976814-1976840	TBL3	HGNC:11587	ENSG00000183751	GGCUGAAGGAGUCCUUCCUGGUGACAGG
hsa_m5C_4313	chr17	5499783	5499784	-	ENST00000568641	C1143	m5C	C5	5'-GGGCCCUAGCCGGGGUCCACGGGAGGGCUGUCCUUGGGG-3'	(((((((....)))))))..((((......))))..... (-16.00)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	39	chr17:5499750-5499788	NA	NA	ENSG00000286190	GGGCCCUAGCCGGGGUCCACGGGAGGGCUGUCCUUGGGG
hsa_m5C_4314	chr9	137169004	137169005	-	ENST00000568665	C309	m5C	C24	5'-GGCUUCCUGCCUGGCGCUGGGCUCUGG-3'	(((.....))).(((.....))).... ( -6.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	27	chr9:137169002-137169028	NA	NA	ENSG00000261793	GGCUUCCUGCCUGGCGCUGGGCUCUGG
hsa_m5C_4315	chr16	2527779	2527780	+	ENST00000569317	C421	m5C	C24	5'-GGGGCAGGGGUCCUCG^GGCUGCACCUGGAGG-3'	....((((((((....))))...)))).... ( -8.80)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	31	chr16:2527600-2527615;2527773-2527787	NA	NA	ENSG00000259784	GGGGCAGGGGUCCUCGGGCUGCACCUGGAGG
hsa_m5C_4316	chr16	2527780	2527781	+	ENST00000569317	C422	m5C	C25	5'-GGGGCAGGGGUCCUCG^GGCUGCACCUGGAGG-3'	....((((((((....))))...)))).... ( -8.80)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	31	chr16:2527600-2527615;2527773-2527787	NA	NA	ENSG00000259784	GGGGCAGGGGUCCUCGGGCUGCACCUGGAGG
hsa_m5C_4317	chr15	89335075	89335076	+	ENST00000569473	C24	m5C	C4	5'-GGCCGCGUGGCCUAAUGGAUAAGG-3'	((((....))))............ ( -7.10)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	24	chr15:89335073-89335096	POLG-DT	HGNC:55363	ENSG00000261441	GGCCGCGUGGCCUAAUGGAUAAGG
hsa_m5C_4318	chr15	89335077	89335078	+	ENST00000569473	C26	m5C	C6	5'-GGCCGCGUGGCCUAAUGGAUAAGG-3'	((((....))))............ ( -7.10)	loop	lncRNA	HeLa	Aza-IP:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	23604283	24	chr15:89335073-89335096	POLG-DT	HGNC:55363	ENSG00000261441	GGCCGCGUGGCCUAAUGGAUAAGG
hsa_m5C_4319	chr15	89335083	89335084	+	ENST00000569473	C32	m5C	C12	5'-GGCCGCGUGGCCUAAUGGAUAAGG-3'	((((....))))............ ( -7.10)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	24	chr15:89335073-89335096	POLG-DT	HGNC:55363	ENSG00000261441	GGCCGCGUGGCCUAAUGGAUAAGG
hsa_m5C_4320	chr16	69318872	69318873	+	ENST00000570054	C466	m5C	C8	5'-GGCCGGGCUGGAGGGG-3'	..((........)).. ( -1.50)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	16	chr16:69318866-69318881	NA	NA	ENSG00000260914	GGCCGGGCUGGAGGGG
hsa_m5C_4321	chr16	80804498	80804499	-	ENST00000570137	C100	m5C	C7	5'-GGGUCGCCGGGUCGCGGGGGCCGCGGCGCUCGGG-3'	(((.(((((((((.....)))).))))))))... (-19.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	34	chr16:80804472-80804505	CDYL2	HGNC:23030	ENSG00000166446	GGGUCGCCGGGUCGCGGGGGCCGCGGCGCUCGGG
hsa_m5C_4322	chr16	2244514	2244515	-	ENST00000570258	C896	m5C	C18	5'-GGCCGGCCUGGACCUGACGG-3'	((((.....)).))...... ( -3.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr16:2244513-2244532	ECI1	HGNC:2703	ENSG00000167969	GGCCGGCCUGGACCUGACGG
hsa_m5C_4323	chr16	10941812	10941813	-	ENST00000570440	C648	m5C	C11	5'-GGACAUGGACCAGGCGCUCGUGG-3'	...(((((.........))))). ( -2.10)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr16:10941801-10941823	DEXI	HGNC:13267	ENSG00000182108	GGACAUGGACCAGGCGCUCGUGG
hsa_m5C_4324	chr16	10942111	10942112	-	ENST00000570440	C349	m5C	C3	5'-GGCUCCAGGGUACCCCUGGAUGG-3'	...(((((((...)))))))... (-11.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr16:10942092-10942114	DEXI	HGNC:13267	ENSG00000182108	GGCUCCAGGGUACCCCUGGAUGG
hsa_m5C_4325	chr16	10942109	10942110	-	ENST00000570440	C351	m5C	C5	5'-GGCUCCAGGGUACCCCUGGAUGG-3'	...(((((((...)))))))... (-11.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr16:10942092-10942114	DEXI	HGNC:13267	ENSG00000182108	GGCUCCAGGGUACCCCUGGAUGG
hsa_m5C_4326	chr16	10942132	10942133	-	ENST00000570440	C328	m5C	C15	5'-GGGGACAUCUGGAGCCCGG-3'	(((...........))).. ( -3.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	19	chr16:10942129-10942147	DEXI	HGNC:13267	ENSG00000182108	GGGGACAUCUGGAGCCCGG
hsa_m5C_4327	chr16	10942131	10942132	-	ENST00000570440	C329	m5C	C16	5'-GGGGACAUCUGGAGCCCGG-3'	(((...........))).. ( -3.90)	loop	mRNA	HeLa	RBS-Seq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30872485	19	chr16:10942129-10942147	DEXI	HGNC:13267	ENSG00000182108	GGGGACAUCUGGAGCCCGG
hsa_m5C_4328	chr16	10942130	10942131	-	ENST00000570440	C330	m5C	C17	5'-GGGGACAUCUGGAGCCCGG-3'	(((...........))).. ( -3.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	19	chr16:10942129-10942147	DEXI	HGNC:13267	ENSG00000182108	GGGGACAUCUGGAGCCCGG
hsa_m5C_4329	chr16	11837602	11837603	-	ENST00000571133	C1687	m5C	C6	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr16:11837594-11837608	RSL1D1	HGNC:24534	ENSG00000171490	GGAGGCCGAGGCAGG
hsa_m5C_4330	chr16	11837601	11837602	-	ENST00000571133	C1688	m5C	C7	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr16:11837594-11837608	RSL1D1	HGNC:24534	ENSG00000171490	GGAGGCCGAGGCAGG
hsa_m5C_4331	chr16	11837436	11837437	-	ENST00000571133	C1853	m5C	C6	5'-GGAGGCGGAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	11	chr16:11837432-11837442	RSL1D1	HGNC:24534	ENSG00000171490	GGAGGCGGAGG
hsa_m5C_4332	chr16	11837468	11837469	-	ENST00000571133	C1821	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr16:11837460-11837474	RSL1D1	HGNC:24534	ENSG00000171490	GGAGGCUGAGGCAGG
hsa_m5C_4333	chr16	11837462	11837463	-	ENST00000571133	C1827	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr16:11837460-11837474	RSL1D1	HGNC:24534	ENSG00000171490	GGAGGCUGAGGCAGG
hsa_m5C_4334	chr16	11835611	11835612	-	ENST00000571133	C3678	m5C	C7	5'-GGGAGGCUGAGGUGGG-3'	NA	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	16	chr16:11835603-11835618	RSL1D1	HGNC:24534	ENSG00000171490	GGGAGGCUGAGGUGGG
hsa_m5C_4335	chr17	80198535	80198536	+	ENST00000571427	C2527	m5C	C35	5'-GGGAACCUCACGGGCAUCUUCAUCCACCGGGUCACCCCGGG-3'	.(((.(((...)))..))).......(((((....))))). (-10.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	41	chr17:80198502-80198542	CARD14	HGNC:16446	ENSG00000141527	GGGAACCUCACGGGCAUCUUCAUCCACCGGGUCACCCCGGG
hsa_m5C_4336	chr17	80198536	80198537	+	ENST00000571427	C2528	m5C	C36	5'-GGGAACCUCACGGGCAUCUUCAUCCACCGGGUCACCCCGGG-3'	.(((.(((...)))..))).......(((((....))))). (-10.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	41	chr17:80198502-80198542	CARD14	HGNC:16446	ENSG00000141527	GGGAACCUCACGGGCAUCUUCAUCCACCGGGUCACCCCGGG
hsa_m5C_4337	chr17	83094676	83094677	+	ENST00000571814	C1733	m5C	C26	5'-GGUGAGGGCCGCGCGCUGGGAGCCGCAUGCCCUGGG-3'	....(((((.(((.(((...))))))..)))))... (-15.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	36	chr17:83094652-83094687	METRNL	HGNC:27584	ENSG00000176845	GGUGAGGGCCGCGCGCUGGGAGCCGCAUGCCCUGGG
hsa_m5C_4338	chr17	5583952	5583953	-	ENST00000572272	C557	m5C	C13	5'-GGACAGAGAUGGCUGGCGGAGCCUGG-3'	..........((((.....))))... ( -5.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr17:5583940-5583965	NLRP1	HGNC:14374	ENSG00000091592	GGACAGAGAUGGCUGGCGGAGCCUGG
hsa_m5C_4339	chr18	3608220	3608221	+	ENST00000572856	C2146	m5C	C8	5'-GGGGAGGCUGAGG-3'	NA	loop	lncRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	13	chr18:3608214-3608226	DLGAP1-AS2	HGNC:28146	ENSG00000262001	GGGGAGGCUGAGG
hsa_m5C_4340	chr17	7393315	7393316	-	ENST00000574401	C827	m5C	C5	5'-GGGGCCGGGCAGCCCCUGGGUCAGGCGG-3'	(((((......)))))............ (-10.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr17:7393293-7393320	PLSCR3	HGNC:16495	ENSG00000187838	GGGGCCGGGCAGCCCCUGGGUCAGGCGG
hsa_m5C_4341	chr17	7393314	7393315	-	ENST00000574401	C828	m5C	C6	5'-GGGGCCGGGCAGCCCCUGGGUCAGGCGG-3'	(((((......)))))............ (-10.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr17:7393293-7393320	PLSCR3	HGNC:16495	ENSG00000187838	GGGGCCGGGCAGCCCCUGGGUCAGGCGG
hsa_m5C_4342	chr16	4474463	4474464	-	ENST00000574733	C399	m5C	C7	5'-GGGGUCCCGGGCUCCUGG-3'	((((((...))))))... ( -6.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr16:4474453-4474470	NMRAL1	HGNC:24987	ENSG00000153406	GGGGUCCCGGGCUCCUGG
hsa_m5C_4343	chr16	3023896	3023897	-	ENST00000574980	C286	m5C	C5	5'-GGGCCCAGCGCCUCCCGCGGGCCGCCUUGGGGGUGACUUGGGG-3'	...(((((((((.((((.((....)).)))))))).)).))). (-21.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	43	chr16:3023859-3023901	HCFC1R1	HGNC:21198	ENSG00000103145	GGGCCCAGCGCCUCCCGCGGGCCGCCUUGGGGGUGACUUGGGG
hsa_m5C_4344	chr16	3023895	3023896	-	ENST00000574980	C287	m5C	C6	5'-GGGCCCAGCGCCUCCCGCGGGCCGCCUUGGGGGUGACUUGGGG-3'	...(((((((((.((((.((....)).)))))))).)).))). (-21.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	43	chr16:3023859-3023901	HCFC1R1	HGNC:21198	ENSG00000103145	GGGCCCAGCGCCUCCCGCGGGCCGCCUUGGGGGUGACUUGGGG
hsa_m5C_4345	chr16	3023879	3023880	-	ENST00000574980	C303	m5C	C22	5'-GGGCCCAGCGCCUCCCGCGGGCCGCCUUGGGGGUGACUUGGGG-3'	...(((((((((.((((.((....)).)))))))).)).))). (-21.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	43	chr16:3023859-3023901	HCFC1R1	HGNC:21198	ENSG00000103145	GGGCCCAGCGCCUCCCGCGGGCCGCCUUGGGGGUGACUUGGGG
hsa_m5C_4346	chr16	3023878	3023879	-	ENST00000574980	C304	m5C	C23	5'-GGGCCCAGCGCCUCCCGCGGGCCGCCUUGGGGGUGACUUGGGG-3'	...(((((((((.((((.((....)).)))))))).)).))). (-21.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	43	chr16:3023859-3023901	HCFC1R1	HGNC:21198	ENSG00000103145	GGGCCCAGCGCCUCCCGCGGGCCGCCUUGGGGGUGACUUGGGG
hsa_m5C_4347	chr16	3023876	3023877	-	ENST00000574980	C306	m5C	C25	5'-GGGCCCAGCGCCUCCCGCGGGCCGCCUUGGGGGUGACUUGGGG-3'	...(((((((((.((((.((....)).)))))))).)).))). (-21.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	43	chr16:3023859-3023901	HCFC1R1	HGNC:21198	ENSG00000103145	GGGCCCAGCGCCUCCCGCGGGCCGCCUUGGGGGUGACUUGGGG
hsa_m5C_4348	chr17	80352975	80352976	-	ENST00000575034	C2503	m5C	C8	5'-GGUGGAUCUCCGGAGG-3'	..(((....))).... ( -0.90)	loop	lncRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	16	chr17:80352968-80352983	RNF213-AS1	HGNC:54402	ENSG00000263069	GGUGGAUCUCCGGAGG
hsa_m5C_4349	chr17	81701933	81701934	-	ENST00000575312	C1384	m5C	C6	5'-GGGCACAGGCUGCUUGGGGGGUGAGGG-3'	(((((.....)))))............ ( -2.80)	loop	lncRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	27	chr17:81701913-81701939	NA	NA	ENSG00000262049	GGGCACAGGCUGCUUGGGGGGUGAGGG
hsa_m5C_4350	chr1	46668155	46668156	-	ENST00000576409	C299	m5C	C4	5'-GGCCCGAGGGGGGCGCCGACAGCAGCGGGGUCGGGG-3'	.((((.....)))).(((((.........))))).. (-15.00)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	36	chr1:46668124-46668159	ATPAF1	HGNC:18803	ENSG00000123472	GGCCCGAGGGGGGCGCCGACAGCAGCGGGGUCGGGG
hsa_m5C_4351	chr1	46668154	46668155	-	ENST00000576409	C300	m5C	C5	5'-GGCCCGAGGGGGGCGCCGACAGCAGCGGGGUCGGGG-3'	.((((.....)))).(((((.........))))).. (-15.00)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	36	chr1:46668124-46668159	ATPAF1	HGNC:18803	ENSG00000123472	GGCCCGAGGGGGGCGCCGACAGCAGCGGGGUCGGGG
hsa_m5C_4352	chr17	746922	746923	-	ENST00000576778	C2429	m5C	C11	5'-GGAGGACAGGCAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	14	chr17:746920-746933	GEMIN4	HGNC:15717	ENSG00000179409	GGAGGACAGGCAGG
hsa_m5C_4353	chr17	81029411	81029412	-	ENST00000577066	C4183	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	lncRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr17:81029409-81029423	BAIAP2-DT	HGNC:44342	ENSG00000226137	GGAGGCUGAGGCAGG
hsa_m5C_4354	chr17	28912823	28912824	-	ENST00000577226	C2094	m5C	C15	5'-GGCAAGGCUGGCCCCGG-3'	(((.......))).... ( -2.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr17:28912822-28912838	PHF12	HGNC:20816	ENSG00000109118	GGCAAGGCUGGCCCCGG
hsa_m5C_4355	chr17	32928218	32928219	+	ENST00000579849	C67	m5C	C24	5'-GGCGGGGCAGUCGCGGGAUGCGCCCGG-3'	..(((((((.((....))))).)))). (-11.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr17:32928196-32928222	TMEM98	HGNC:24529	ENSG00000006042	GGCGGGGCAGUCGCGGGAUGCGCCCGG
hsa_m5C_4356	chr17	32928219	32928220	+	ENST00000579849	C68	m5C	C25	5'-GGCGGGGCAGUCGCGGGAUGCGCCCGG-3'	..(((((((.((....))))).)))). (-11.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	27	chr17:32928196-32928222	TMEM98	HGNC:24529	ENSG00000006042	GGCGGGGCAGUCGCGGGAUGCGCCCGG
hsa_m5C_4357	chr18	75211691	75211692	+	ENST00000580243	C896	m5C	C3	5'-GGCCCCGGGCGCGGCGG-3'	..(((((....))).)) ( -5.30)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	17	chr18:75211690-75211706	TSHZ1	HGNC:10669	ENSG00000179981	GGCCCCGGGCGCGGCGG
hsa_m5C_4358	chr18	75211692	75211693	+	ENST00000580243	C897	m5C	C4	5'-GGCCCCGGGCGCGGCGG-3'	..(((((....))).)) ( -5.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	17	chr18:75211690-75211706	TSHZ1	HGNC:10669	ENSG00000179981	GGCCCCGGGCGCGGCGG
hsa_m5C_4359	chr18	75211693	75211694	+	ENST00000580243	C898	m5C	C5	5'-GGCCCCGGGCGCGGCGG-3'	..(((((....))).)) ( -5.30)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	17	chr18:75211690-75211706	TSHZ1	HGNC:10669	ENSG00000179981	GGCCCCGGGCGCGGCGG
hsa_m5C_4360	chr18	75211694	75211695	+	ENST00000580243	C899	m5C	C6	5'-GGCCCCGGGCGCGGCGG-3'	..(((((....))).)) ( -5.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	17	chr18:75211690-75211706	TSHZ1	HGNC:10669	ENSG00000179981	GGCCCCGGGCGCGGCGG
hsa_m5C_4361	chr18	75211698	75211699	+	ENST00000580243	C903	m5C	C10	5'-GGCCCCGGGCGCGGCGG-3'	..(((((....))).)) ( -5.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	17	chr18:75211690-75211706	TSHZ1	HGNC:10669	ENSG00000179981	GGCCCCGGGCGCGGCGG
hsa_m5C_4362	chr1	150308595	150308596	+	ENST00000581066	C1079	m5C	C7	5'-GGGAGGCUGAGGCGGGCGG-3'	.....(((......))).. ( -2.80)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;heart,spleen,Testis,HeLa,T24	m5C-RIP-seq:(Medium);RNA-BisSeq:(High),m5C-RIP-seq:(Medium)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	31061524	19	chr1:150308590-150308608	MRPS21	HGNC:14046	ENSG00000266472	GGGAGGCUGAGGCGGGCGG
hsa_m5C_4363	chr1	150308601	150308602	+	ENST00000581066	C1085	m5C	C13	5'-GGGAGGCUGAGGCGGGCGG-3'	.....(((......))).. ( -2.80)	loop	mRNA	Testis,HeLa,T24;HeLa,With in vitro transcribed non-m5C spike-ins	m5C-RIP-seq:(Medium);RNA-BisSeq:(High),m5C-RIP-seq:(Medium)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	31061524	19	chr1:150308590-150308608	MRPS21	HGNC:14046	ENSG00000266472	GGGAGGCUGAGGCGGGCGG
hsa_m5C_4364	chr1	150308605	150308606	+	ENST00000581066	C1089	m5C	C17	5'-GGGAGGCUGAGGCGGGCGG-3'	.....(((......))).. ( -2.80)	loop	mRNA	Testis,HeLa,T24;HeLa,With in vitro transcribed non-m5C spike-ins	m5C-RIP-seq:(Medium);RNA-BisSeq:(High),m5C-RIP-seq:(Medium)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	31061524	19	chr1:150308590-150308608	MRPS21	HGNC:14046	ENSG00000266472	GGGAGGCUGAGGCGGGCGG
hsa_m5C_4365	chr17	82237392	82237393	+	ENST00000581287	C2945	m5C	C24	5'-GGUGGUCACGGCCCAGCCGGGCUCGGGG-3'	........((((((....)))).))... ( -9.40)	loop	mRNA	Different_Methylation_MDA468-MCF10A	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	30009162	28	chr17:82237370-82237397	SLC16A3	HGNC:10924	ENSG00000141526	GGUGGUCACGGCCCAGCCGGGCUCGGGG
hsa_m5C_4366	chr18	633343	633344	+	ENST00000581619	C1825	m5C	C9	5'-GGGCAGGACAGAGGACUGUGUGG-3'	..((((.........)))).... ( -3.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	23	chr18:633336-633358	CLUL1	HGNC:2096	ENSG00000079101	GGGCAGGACAGAGGACUGUGUGG
hsa_m5C_4367	chr17	7577774	7577775	+	ENST00000581621	C991	m5C	C5	5'-GGUUCCUGGAACCCAGGUGCCUACCUGG-3'	(((.(((((...))))).)))....... (-11.70)	loop	lncRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	28	chr17:7577771-7577798	NA	NA	ENSG00000264772	GGUUCCUGGAACCCAGGUGCCUACCUGG
hsa_m5C_4368	chr17	67826006	67826007	+	ENST00000582467	C505	m5C	C6	5'-GGGGGCGAGGAGGCGGGGGCGGCAGGACGGGGGGCGGGGG-3'	............((.....((......))....))..... ( -3.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	40	chr17:67826002-67826041	BPTF	HGNC:3581	ENSG00000171634	GGGGGCGAGGAGGCGGGGGCGGCAGGACGGGGGGCGGGGG
hsa_m5C_4369	chr17	67826014	67826015	+	ENST00000582467	C513	m5C	C14	5'-GGGGGCGAGGAGGCGGGGGCGGCAGGACGGGGGGCGGGGG-3'	............((.....((......))....))..... ( -3.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	40	chr17:67826002-67826041	BPTF	HGNC:3581	ENSG00000171634	GGGGGCGAGGAGGCGGGGGCGGCAGGACGGGGGGCGGGGG
hsa_m5C_4370	chr17	67826020	67826021	+	ENST00000582467	C519	m5C	C20	5'-GGGGGCGAGGAGGCGGGGGCGGCAGGACGGGGGGCGGGGG-3'	............((.....((......))....))..... ( -3.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	40	chr17:67826002-67826041	BPTF	HGNC:3581	ENSG00000171634	GGGGGCGAGGAGGCGGGGGCGGCAGGACGGGGGGCGGGGG
hsa_m5C_4371	chr17	67826023	67826024	+	ENST00000582467	C522	m5C	C23	5'-GGGGGCGAGGAGGCGGGGGCGGCAGGACGGGGGGCGGGGG-3'	............((.....((......))....))..... ( -3.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	40	chr17:67826002-67826041	BPTF	HGNC:3581	ENSG00000171634	GGGGGCGAGGAGGCGGGGGCGGCAGGACGGGGGGCGGGGG
hsa_m5C_4372	chr1	145745707	145745708	-	ENST00000582693	C2295	m5C	C6	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	15	chr1:145745699-145745713	RNF115	HGNC:18154	ENSG00000265491	GGAGGCCGAGGCAGG
hsa_m5C_4373	chr1	145745706	145745707	-	ENST00000582693	C2296	m5C	C7	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	15	chr1:145745699-145745713	RNF115	HGNC:18154	ENSG00000265491	GGAGGCCGAGGCAGG
hsa_m5C_4374	chr1	145745701	145745702	-	ENST00000582693	C2301	m5C	C12	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	15	chr1:145745699-145745713	RNF115	HGNC:18154	ENSG00000265491	GGAGGCCGAGGCAGG
hsa_m5C_4375	chr17	64146426	64146427	+	ENST00000582965	C262	m5C	C6	5'-GGGGCCGCCUGGCCUCCCGCGG-3'	((((((....))))))...... (-10.30)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr17:64146422-64146443	SNHG25	HGNC:51534	ENSG00000266402	GGGGCCGCCUGGCCUCCCGCGG
hsa_m5C_4376	chr17	64146434	64146435	+	ENST00000582965	C270	m5C	C14	5'-GGGGCCGCCUGGCCUCCCGCGG-3'	((((((....))))))...... (-10.30)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr17:64146422-64146443	SNHG25	HGNC:51534	ENSG00000266402	GGGGCCGCCUGGCCUCCCGCGG
hsa_m5C_4377	chr17	64146438	64146439	+	ENST00000582965	C274	m5C	C18	5'-GGGGCCGCCUGGCCUCCCGCGG-3'	((((((....))))))...... (-10.30)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr17:64146422-64146443	SNHG25	HGNC:51534	ENSG00000266402	GGGGCCGCCUGGCCUCCCGCGG
hsa_m5C_4378	chr1	43453716	43453717	-	ENST00000583037	C273	m5C	C10	5'-GGGUGCGGGCCGCGGGCAGCUCGGG-3'	.....(((((........))))).. ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	25	chr1:43453702-43453726	HYI	HGNC:26948	ENSG00000178922	GGGUGCGGGCCGCGGGCAGCUCGGG
hsa_m5C_4379	chr1	43453715	43453716	-	ENST00000583037	C274	m5C	C11	5'-GGGUGCGGGCCGCGGGCAGCUCGGG-3'	.....(((((........))))).. ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	25	chr1:43453702-43453726	HYI	HGNC:26948	ENSG00000178922	GGGUGCGGGCCGCGGGCAGCUCGGG
hsa_m5C_4380	chr1	43453706	43453707	-	ENST00000583037	C283	m5C	C20	5'-GGGUGCGGGCCGCGGGCAGCUCGGG-3'	.....(((((........))))).. ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	25	chr1:43453702-43453726	HYI	HGNC:26948	ENSG00000178922	GGGUGCGGGCCGCGGGCAGCUCGGG
hsa_m5C_4381	chr1	43453704	43453705	-	ENST00000583037	C285	m5C	C22	5'-GGGUGCGGGCCGCGGGCAGCUCGGG-3'	.....(((((........))))).. ( -6.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	25	chr1:43453702-43453726	HYI	HGNC:26948	ENSG00000178922	GGGUGCGGGCCGCGGGCAGCUCGGG
hsa_m5C_4382	chr17	47678397	47678398	+	ENST00000583648	C2788	m5C	C17	5'-GGGAUUAAAGGGGGAUCAGG-3'	..((((.......))))... ( -0.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	20	chr17:47678382-47678401	KPNB1	HGNC:6400	ENSG00000108424	GGGAUUAAAGGGGGAUCAGG
hsa_m5C_4383	chr17	75138494	75138495	-	ENST00000584339	C321	m5C	C6	5'-GGAGGCGGAGG-3'	NA	loop	lncRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	11	chr17:75138490-75138500	NA	NA	ENSG00000265800	GGAGGCGGAGG
hsa_m5C_4384	chr17	81456345	81456346	+	ENST00000584436	C5079	m5C	C17	5'-GGCGGGCUGGCGCCCUCCGUGGCCCACAGG-3'	((.((((....)))).))(((...)))... (-11.20)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	30	chr17:81456330-81456359	BAHCC1	HGNC:29279	ENSG00000266074	GGCGGGCUGGCGCCCUCCGUGGCCCACAGG
hsa_m5C_4385	chr17	81445060	81445061	+	ENST00000584436	C3085	m5C	C6	5'-GGGGGCCGGGG-3'	NA	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	11	chr17:81445056-81445066	BAHCC1	HGNC:29279	ENSG00000266074	GGGGGCCGGGG
hsa_m5C_4386	chr17	81445061	81445062	+	ENST00000584436	C3086	m5C	C7	5'-GGGGGCCGGGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	31358969	11	chr17:81445056-81445066	BAHCC1	HGNC:29279	ENSG00000266074	GGGGGCCGGGG
hsa_m5C_4387	chr17	58358622	58358623	-	ENST00000584437	C3109	m5C	C17	5'-GGAGCCAGGCAUGGGCCCUCGG-3'	((.(((.......))))).... ( -6.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr17:58358618-58358639	RNF43	HGNC:18505	ENSG00000108375	GGAGCCAGGCAUGGGCCCUCGG
hsa_m5C_4388	chr17	39708325	39708326	+	ENST00000584601	C938	m5C	C7	5'-G^GAUAUCCAGGAGGUGCAGG-3'	((....))............ ( -0.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr17:39707141-39707141;39708321-39708339	ERBB2	HGNC:3430	ENSG00000141736	GGAUAUCCAGGAGGUGCAGG
hsa_m5C_4389	chr17	82443559	82443560	-	ENST00000585115	C1897	m5C	C8	5'-GGAGAGGCGGGGCCAGGCCGGGCCCUUGUGGG-3'	......((((((((......))))).)))... (-11.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	32	chr17:82443536-82443567	CYBC1	HGNC:28672	ENSG00000178927	GGAGAGGCGGGGCCAGGCCGGGCCCUUGUGGG
hsa_m5C_4390	chr17	82443554	82443555	-	ENST00000585115	C1902	m5C	C13	5'-GGAGAGGCGGGGCCAGGCCGGGCCCUUGUGGG-3'	......((((((((......))))).)))... (-11.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	32	chr17:82443536-82443567	CYBC1	HGNC:28672	ENSG00000178927	GGAGAGGCGGGGCCAGGCCGGGCCCUUGUGGG
hsa_m5C_4391	chr17	82443548	82443549	-	ENST00000585115	C1908	m5C	C19	5'-GGAGAGGCGGGGCCAGGCCGGGCCCUUGUGGG-3'	......((((((((......))))).)))... (-11.80)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	32	chr17:82443536-82443567	CYBC1	HGNC:28672	ENSG00000178927	GGAGAGGCGGGGCCAGGCCGGGCCCUUGUGGG
hsa_m5C_4392	chr19	1224241	1224242	+	ENST00000585465	C630	m5C	C6	5'-GGGGGCCCCCCAGGAGG-3'	((((...))))...... ( -6.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	17	chr19:1224237-1224253	STK11	HGNC:11389	ENSG00000118046	GGGGGCCCCCCAGGAGG
hsa_m5C_4393	chr19	1224242	1224243	+	ENST00000585465	C631	m5C	C7	5'-GGGGGCCCCCCAGGAGG-3'	((((...))))...... ( -6.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	17	chr19:1224237-1224253	STK11	HGNC:11389	ENSG00000118046	GGGGGCCCCCCAGGAGG
hsa_m5C_4394	chr19	1224243	1224244	+	ENST00000585465	C632	m5C	C8	5'-GGGGGCCCCCCAGGAGG-3'	((((...))))...... ( -6.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	17	chr19:1224237-1224253	STK11	HGNC:11389	ENSG00000118046	GGGGGCCCCCCAGGAGG
hsa_m5C_4395	chr19	1224244	1224245	+	ENST00000585465	C633	m5C	C9	5'-GGGGGCCCCCCAGGAGG-3'	((((...))))...... ( -6.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	17	chr19:1224237-1224253	STK11	HGNC:11389	ENSG00000118046	GGGGGCCCCCCAGGAGG
hsa_m5C_4396	chr19	1224245	1224246	+	ENST00000585465	C634	m5C	C10	5'-GGGGGCCCCCCAGGAGG-3'	((((...))))...... ( -6.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	17	chr19:1224237-1224253	STK11	HGNC:11389	ENSG00000118046	GGGGGCCCCCCAGGAGG
hsa_m5C_4397	chr19	1224188	1224189	+	ENST00000585465	C577	m5C	C7	5'-GGGGGUCCCCGGGGGGUACAGUGUCUGGG-3'	.......((((((..........)))))) ( -6.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	29	chr19:1224183-1224211	STK11	HGNC:11389	ENSG00000118046	GGGGGUCCCCGGGGGGUACAGUGUCUGGG
hsa_m5C_4398	chr19	1224189	1224190	+	ENST00000585465	C578	m5C	C8	5'-GGGGGUCCCCGGGGGGUACAGUGUCUGGG-3'	.......((((((..........)))))) ( -6.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	29	chr19:1224183-1224211	STK11	HGNC:11389	ENSG00000118046	GGGGGUCCCCGGGGGGUACAGUGUCUGGG
hsa_m5C_4399	chr19	1224190	1224191	+	ENST00000585465	C579	m5C	C9	5'-GGGGGUCCCCGGGGGGUACAGUGUCUGGG-3'	.......((((((..........)))))) ( -6.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	29	chr19:1224183-1224211	STK11	HGNC:11389	ENSG00000118046	GGGGGUCCCCGGGGGGUACAGUGUCUGGG
hsa_m5C_4400	chr19	1224191	1224192	+	ENST00000585465	C580	m5C	C10	5'-GGGGGUCCCCGGGGGGUACAGUGUCUGGG-3'	.......((((((..........)))))) ( -6.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	29	chr19:1224183-1224211	STK11	HGNC:11389	ENSG00000118046	GGGGGUCCCCGGGGGGUACAGUGUCUGGG
hsa_m5C_4401	chr19	55047484	55047485	-	ENST00000585492	C498	m5C	C16	5'-GGCGGCUGCAAG^GCUCUGG-3'	...((((....)))).... ( -3.00)	loop	lncRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr19:55047482-55047488;55048329-55048340	NA	NA	ENSG00000267149	GGCGGCUGCAAGGCUCUGG
hsa_m5C_4402	chr19	990251	990252	+	ENST00000585809	C494	m5C	C7	5'-GGAUUCCGGCGCCCAGGCACGUCUGG-3'	.....((((((........)).)))) ( -4.50)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	26	chr19:990246-990271	WDR18	HGNC:17956	ENSG00000065268	GGAUUCCGGCGCCCAGGCACGUCUGG
hsa_m5C_4403	chr17	51260003	51260004	-	ENST00000586178	C46	m5C	C28	5'-GGGCCACCCGAGUUAAAGGGGGGAAAUCCGGG-3'	(((((.(((........))).))...)))... ( -9.00)	loop	mRNA	T24;293T;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	31358969;38168991	32	chr17:51260000-51260031	MBTD1	HGNC:19866	ENSG00000011258	GGGCCACCCGAGUUAAAGGGGGGAAAUCCGGG
hsa_m5C_4404	chr19	13758972	13758973	+	ENST00000586600	C866	m5C	C10	5'-GGAGGAGCGCUGGGACAUGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	20	chr19:13758964-13758983	YJU2B	HGNC:28118	ENSG00000104957	GGAGGAGCGCUGGGACAUGG
hsa_m5C_4405	chr19	13759149	13759150	+	ENST00000586600	C954	m5C	C9	5'-GGCUGGAGCAUGGCGAGG-3'	.((((.....)))).... ( -2.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr19:13759142-13759159	YJU2B	HGNC:28118	ENSG00000104957	GGCUGGAGCAUGGCGAGG
hsa_m5C_4406	chr19	13759154	13759155	+	ENST00000586600	C959	m5C	C14	5'-GGCUGGAGCAUGGCGAGG-3'	.((((.....)))).... ( -2.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr19:13759142-13759159	YJU2B	HGNC:28118	ENSG00000104957	GGCUGGAGCAUGGCGAGG
hsa_m5C_4407	chr19	11178563	11178564	-	ENST00000586659	C1745	m5C	C6	5'-GGAGGCCGGGGG-3'	NA	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	12	chr19:11178558-11178569	KANK2	HGNC:29300	ENSG00000197256	GGAGGCCGGGGG
hsa_m5C_4408	chr19	11178562	11178563	-	ENST00000586659	C1746	m5C	C7	5'-GGAGGCCGGGGG-3'	NA	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	12	chr19:11178558-11178569	KANK2	HGNC:29300	ENSG00000197256	GGAGGCCGGGGG
hsa_m5C_4409	chr19	10925697	10925698	-	ENST00000586748	C514	m5C	C9	5'-GGAAUCGGCCGGAUCUGUAUG^G-3'	(((.((.....)))))...... ( -1.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr19:10924192-10924192;10925686-10925706	YIPF2	HGNC:28476	ENSG00000130733	GGAAUCGGCCGGAUCUGUAUGG
hsa_m5C_4410	chr19	55651342	55651343	+	ENST00000586790	C1209	m5C	C38	5'-GGGCCCAGGCGGAUGGAGGGGGACAGCCGUGGUGGGGCUGGGGG-3'	((.((((.((((.((........)).))))..)))).))..... (-16.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	44	chr19:55651306-55651349	CCDC106	HGNC:30181	ENSG00000173581	GGGCCCAGGCGGAUGGAGGGGGACAGCCGUGGUGGGGCUGGGGG
hsa_m5C_4411	chr19	14073498	14073499	+	ENST00000587086	C714	m5C	C18	5'-GGGCGCGGGCGGGCGCGCAGAUGCAGCGGG-3'	..(((((......)))))............ ( -9.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	30	chr19:14073482-14073511	MISP3	HGNC:26963	ENSG00000141854	GGGCGCGGGCGGGCGCGCAGAUGCAGCGGG
hsa_m5C_4412	chr19	12930684	12930685	-	ENST00000588025	C473	m5C	C15	5'-GGGCGAGGAGAUUGCCCGGGAGGG-3'	((((((.....))))))....... ( -9.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	24	chr19:12930676-12930699	FARSA	HGNC:3592	ENSG00000179115	GGGCGAGGAGAUUGCCCGGGAGGG
hsa_m5C_4413	chr19	12930683	12930684	-	ENST00000588025	C474	m5C	C16	5'-GGGCGAGGAGAUUGCCCGGGAGGG-3'	((((((.....))))))....... ( -9.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	24	chr19:12930676-12930699	FARSA	HGNC:3592	ENSG00000179115	GGGCGAGGAGAUUGCCCGGGAGGG
hsa_m5C_4414	chr19	12930682	12930683	-	ENST00000588025	C475	m5C	C17	5'-GGGCGAGGAGAUUGCCCGGGAGGG-3'	((((((.....))))))....... ( -9.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	24	chr19:12930676-12930699	FARSA	HGNC:3592	ENSG00000179115	GGGCGAGGAGAUUGCCCGGGAGGG
hsa_m5C_4415	chr19	12933763	12933764	-	ENST00000588025	C274	m5C	C5	5'-GGUUCCG^GUGGCGG-3'	....(((....))) ( -2.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr19:12933675-12933681;12933762-12933768	FARSA	HGNC:3592	ENSG00000179115	GGUUCCGGUGGCGG
hsa_m5C_4416	chr19	625151	625152	-	ENST00000588649	C950	m5C	C6	5'-GGAGGCAGGACCAGGACGCCGG-3'	...(((...........))).. ( -3.00)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr19:625136-625157	POLRMT	HGNC:9200	ENSG00000099821	GGAGGCAGGACCAGGACGCCGG
hsa_m5C_4417	chr19	625145	625146	-	ENST00000588649	C956	m5C	C12	5'-GGAGGCAGGACCAGGACGCCGG-3'	...(((...........))).. ( -3.00)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr19:625136-625157	POLRMT	HGNC:9200	ENSG00000099821	GGAGGCAGGACCAGGACGCCGG
hsa_m5C_4418	chr19	10687670	10687671	+	ENST00000588657	C2629	m5C	C6	5'-GGGGGCGGGG-3'	NA	loop	mRNA	HeLa,knock out;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	m5C-RIP-seq:(Medium)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	31061524	10	chr19:10687666-10687675	ILF3	HGNC:6038	ENSG00000129351	GGGGGCGGGG
hsa_m5C_4419	chr19	5661776	5661777	+	ENST00000588852	C2245	m5C	C11	5'-GGAGCGGCGGCCCGCGG-3'	...((((....)))).. ( -5.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr19:5661767-5661783	SAFB	HGNC:10520	ENSG00000160633	GGAGCGGCGGCCCGCGG
hsa_m5C_4420	chr19	5661777	5661778	+	ENST00000588852	C2246	m5C	C12	5'-GGAGCGGCGGCCCGCGG-3'	...((((....)))).. ( -5.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr19:5661767-5661783	SAFB	HGNC:10520	ENSG00000160633	GGAGCGGCGGCCCGCGG
hsa_m5C_4421	chr19	5667157	5667158	+	ENST00000588852	C2570	m5C	C21	5'-GGGCCGGGGGCUGCCUCCUCCCCCCAG^GGGCAGACGUGACUGGG-3'	(((..(((((...))))).)))(((((..((....))..))))) (-19.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	44	chr19:5667138-5667164;5667347-5667363	SAFB	HGNC:10520	ENSG00000160633	GGGCCGGGGGCUGCCUCCUCCCCCCAGGGGCAGACGUGACUGGG
hsa_m5C_4422	chr19	5667158	5667159	+	ENST00000588852	C2571	m5C	C22	5'-GGGCCGGGGGCUGCCUCCUCCCCCCAG^GGGCAGACGUGACUGGG-3'	(((..(((((...))))).)))(((((..((....))..))))) (-19.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	44	chr19:5667138-5667164;5667347-5667363	SAFB	HGNC:10520	ENSG00000160633	GGGCCGGGGGCUGCCUCCUCCCCCCAGGGGCAGACGUGACUGGG
hsa_m5C_4423	chr19	5667159	5667160	+	ENST00000588852	C2572	m5C	C23	5'-GGGCCGGGGGCUGCCUCCUCCCCCCAG^GGGCAGACGUGACUGGG-3'	(((..(((((...))))).)))(((((..((....))..))))) (-19.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	44	chr19:5667138-5667164;5667347-5667363	SAFB	HGNC:10520	ENSG00000160633	GGGCCGGGGGCUGCCUCCUCCCCCCAGGGGCAGACGUGACUGGG
hsa_m5C_4424	chr19	5667160	5667161	+	ENST00000588852	C2573	m5C	C24	5'-GGGCCGGGGGCUGCCUCCUCCCCCCAG^GGGCAGACGUGACUGGG-3'	(((..(((((...))))).)))(((((..((....))..))))) (-19.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	44	chr19:5667138-5667164;5667347-5667363	SAFB	HGNC:10520	ENSG00000160633	GGGCCGGGGGCUGCCUCCUCCCCCCAGGGGCAGACGUGACUGGG
hsa_m5C_4425	chr19	5667161	5667162	+	ENST00000588852	C2574	m5C	C25	5'-GGGCCGGGGGCUGCCUCCUCCCCCCAG^GGGCAGACGUGACUGGG-3'	(((..(((((...))))).)))(((((..((....))..))))) (-19.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	44	chr19:5667138-5667164;5667347-5667363	SAFB	HGNC:10520	ENSG00000160633	GGGCCGGGGGCUGCCUCCUCCCCCCAGGGGCAGACGUGACUGGG
hsa_m5C_4426	chr19	5623111	5623112	+	ENST00000588852	C30	m5C	C14	5'-GGGGCGACUGGAGCGG-3'	...((.......)).. ( -1.30)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr19:5623099-5623114	SAFB	HGNC:10520	ENSG00000160633	GGGGCGACUGGAGCGG
hsa_m5C_4427	chr2	178802302	178802303	-	ENST00000589042	C355	m5C	C15	5'-GGUUUAGGGAUGGCCAGG-3'	((((.......))))... ( -2.90)	loop	mRNA	heart,Muscle;heart	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	18	chr2:178802300-178802317	TTN	HGNC:12403	ENSG00000155657	GGUUUAGGGAUGGCCAGG
hsa_m5C_4428	chr17	76081983	76081984	-	ENST00000589210	C3814	m5C	C16	5'-GGGGCUGGGCUGGGGCCGCUCUUGGCCCCAAGGUUGCCCCGGG-3'	(((((.((.((((((((......)))))).)).)))))))... (-27.60)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	43	chr17:76081957-76081999	EXOC7	HGNC:23214	ENSG00000182473	GGGGCUGGGCUGGGGCCGCUCUUGGCCCCAAGGUUGCCCCGGG
hsa_m5C_4429	chr17	76081982	76081983	-	ENST00000589210	C3815	m5C	C17	5'-GGGGCUGGGCUGGGGCCGCUCUUGGCCCCAAGGUUGCCCCGGG-3'	(((((.((.((((((((......)))))).)).)))))))... (-27.60)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	43	chr17:76081957-76081999	EXOC7	HGNC:23214	ENSG00000182473	GGGGCUGGGCUGGGGCCGCUCUUGGCCCCAAGGUUGCCCCGGG
hsa_m5C_4430	chr17	76081973	76081974	-	ENST00000589210	C3824	m5C	C26	5'-GGGGCUGGGCUGGGGCCGCUCUUGGCCCCAAGGUUGCCCCGGG-3'	(((((.((.((((((((......)))))).)).)))))))... (-27.60)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	43	chr17:76081957-76081999	EXOC7	HGNC:23214	ENSG00000182473	GGGGCUGGGCUGGGGCCGCUCUUGGCCCCAAGGUUGCCCCGGG
hsa_m5C_4431	chr17	76081972	76081973	-	ENST00000589210	C3825	m5C	C27	5'-GGGGCUGGGCUGGGGCCGCUCUUGGCCCCAAGGUUGCCCCGGG-3'	(((((.((.((((((((......)))))).)).)))))))... (-27.60)	bulge	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	43	chr17:76081957-76081999	EXOC7	HGNC:23214	ENSG00000182473	GGGGCUGGGCUGGGGCCGCUCUUGGCCCCAAGGUUGCCCCGGG
hsa_m5C_4432	chr17	76081971	76081972	-	ENST00000589210	C3826	m5C	C28	5'-GGGGCUGGGCUGGGGCCGCUCUUGGCCCCAAGGUUGCCCCGGG-3'	(((((.((.((((((((......)))))).)).)))))))... (-27.60)	bulge	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	43	chr17:76081957-76081999	EXOC7	HGNC:23214	ENSG00000182473	GGGGCUGGGCUGGGGCCGCUCUUGGCCCCAAGGUUGCCCCGGG
hsa_m5C_4433	chr17	76081970	76081971	-	ENST00000589210	C3827	m5C	C29	5'-GGGGCUGGGCUGGGGCCGCUCUUGGCCCCAAGGUUGCCCCGGG-3'	(((((.((.((((((((......)))))).)).)))))))... (-27.60)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	43	chr17:76081957-76081999	EXOC7	HGNC:23214	ENSG00000182473	GGGGCUGGGCUGGGGCCGCUCUUGGCCCCAAGGUUGCCCCGGG
hsa_m5C_4434	chr17	76082265	76082266	-	ENST00000589210	C3532	m5C	C8	5'-GGGUUAUCAGGGGAUUGAGGUCACCUGGGACUUCAGGG-3'	.((((.(((((.(((....))).)))))))))...... ( -9.40)	loop	mRNA	frontal_cortex,heart,293T,lung,Muscle,spleen,Testis,HeLa;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;38168991	28418038;30872485;38168991	38	chr17:76082236-76082273	EXOC7	HGNC:23214	ENSG00000182473	GGGUUAUCAGGGGAUUGAGGUCACCUGGGACUUCAGGG
hsa_m5C_4435	chr19	9811002	9811003	-	ENST00000589626	C1184	m5C	C4	5'-GGGCUGGGGUGGGAGGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	17	chr19:9810990-9811006	FBXL12	HGNC:13611	ENSG00000127452	GGGCUGGGGUGGGAGGG
hsa_m5C_4436	chr17	75823500	75823501	+	ENST00000589666	C2331	m5C	C4	5'-GGCCCACCUGGAACAAGUGGACAAG^G-3'	...((((.((...)).))))...... ( -4.60)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	26	chr17:75823498-75823522;75824262-75824262	UNK	HGNC:29369	ENSG00000132478	GGCCCACCUGGAACAAGUGGACAAGG
hsa_m5C_4437	chr17	75784854	75784855	+	ENST00000589666	C50	m5C	C7	5'-GGGGAGCGGCGAAGAGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr17:75784849-75784865	UNK	HGNC:29369	ENSG00000132478	GGGGAGCGGCGAAGAGG
hsa_m5C_4438	chr17	43002750	43002751	+	ENST00000589913	C610	m5C	C4	5'-GGCCCGACGGGAGGCCAAGG-3'	((((........)))).... ( -7.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr17:43002748-43002767	RPL27	HGNC:10328	ENSG00000131469	GGCCCGACGGGAGGCCAAGG
hsa_m5C_4439	chr17	43002754	43002755	+	ENST00000589913	C614	m5C	C8	5'-GGCCCGACGGGAGGCCAAGG-3'	((((........)))).... ( -7.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr17:43002748-43002767	RPL27	HGNC:10328	ENSG00000131469	GGCCCGACGGGAGGCCAAGG
hsa_m5C_4440	chr17	43002761	43002762	+	ENST00000589913	C621	m5C	C15	5'-GGCCCGACGGGAGGCCAAGG-3'	((((........)))).... ( -7.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr17:43002748-43002767	RPL27	HGNC:10328	ENSG00000131469	GGCCCGACGGGAGGCCAAGG
hsa_m5C_4441	chr19	34481884	34481885	+	ENST00000590071	C128	m5C	C20	5'-GGGGUCCCGGGGCGGGCUCCGGG-3'	((((.((((...))))))))... (-11.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr19:34481866-34481888	WTIP	HGNC:20964	ENSG00000142279	GGGGUCCCGGGGCGGGCUCCGGG
hsa_m5C_4442	chr19	1229828	1229829	-	ENST00000590083	C2719	m5C	C3	5'-GGCCCAAGGACGGCGAGG-3'	.(((.......))).... ( -3.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	18	chr19:1229814-1229831	CBARP	HGNC:28617	ENSG00000099625	GGCCCAAGGACGGCGAGG
hsa_m5C_4443	chr19	1229827	1229828	-	ENST00000590083	C2720	m5C	C4	5'-GGCCCAAGGACGGCGAGG-3'	.(((.......))).... ( -3.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	18	chr19:1229814-1229831	CBARP	HGNC:28617	ENSG00000099625	GGCCCAAGGACGGCGAGG
hsa_m5C_4444	chr19	1229826	1229827	-	ENST00000590083	C2721	m5C	C5	5'-GGCCCAAGGACGGCGAGG-3'	.(((.......))).... ( -3.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	18	chr19:1229814-1229831	CBARP	HGNC:28617	ENSG00000099625	GGCCCAAGGACGGCGAGG
hsa_m5C_4445	chr19	1228670	1228671	-	ENST00000590083	C3877	m5C	C11	5'-GGCCGGGAGGCGG-3'	.(((....))).. ( -5.00)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	13	chr19:1228669-1228681	CBARP	HGNC:28617	ENSG00000099625	GGCCGGGAGGCGG
hsa_m5C_4446	chr17	78126780	78126781	-	ENST00000590602	C270	m5C	C7	5'-GGGGACCAGGG^CCAGG-3'	.((........))... ( -1.40)	loop	mRNA	293T;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	16	chr17:78126644-78126648;78126777-78126787	TMC6	HGNC:18021	ENSG00000141524	GGGGACCAGGGCCAGG
hsa_m5C_4447	chr17	42668014	42668015	-	ENST00000591022	C2925	m5C	C19	5'-GGGACAGGGCACAUCCCACACCCAAGGGCUACAAUGGG-3'	(((...(((.....)))...)))............... ( -7.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	38	chr17:42667996-42668033	PLEKHH3	HGNC:26105	ENSG00000068137	GGGACAGGGCACAUCCCACACCCAAGGGCUACAAUGGG
hsa_m5C_4448	chr17	42668012	42668013	-	ENST00000591022	C2927	m5C	C21	5'-GGGACAGGGCACAUCCCACACCCAAGGGCUACAAUGGG-3'	(((...(((.....)))...)))............... ( -7.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	38	chr17:42667996-42668033	PLEKHH3	HGNC:26105	ENSG00000068137	GGGACAGGGCACAUCCCACACCCAAGGGCUACAAUGGG
hsa_m5C_4449	chr17	42670128	42670129	-	ENST00000591022	C2233	m5C	C4	5'-GGGCGGAGCGGGCCCGGCGCGGCGGGG-3'	((((.......))))............ ( -8.10)	bulge	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	27	chr17:42670106-42670132	PLEKHH3	HGNC:26105	ENSG00000068137	GGGCGGAGCGGGCCCGGCGCGGCGGGG
hsa_m5C_4450	chr17	42670123	42670124	-	ENST00000591022	C2238	m5C	C9	5'-GGGCGGAGCGGGCCCGGCGCGGCGGGG-3'	((((.......))))............ ( -8.10)	bulge	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	27	chr17:42670106-42670132	PLEKHH3	HGNC:26105	ENSG00000068137	GGGCGGAGCGGGCCCGGCGCGGCGGGG
hsa_m5C_4451	chr17	42670114	42670115	-	ENST00000591022	C2247	m5C	C18	5'-GGGCGGAGCGGGCCCGGCGCGGCGGGG-3'	((((.......))))............ ( -8.10)	bulge	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	27	chr17:42670106-42670132	PLEKHH3	HGNC:26105	ENSG00000068137	GGGCGGAGCGGGCCCGGCGCGGCGGGG
hsa_m5C_4452	chr17	42670112	42670113	-	ENST00000591022	C2249	m5C	C20	5'-GGGCGGAGCGGGCCCGGCGCGGCGGGG-3'	((((.......))))............ ( -8.10)	bulge	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	27	chr17:42670106-42670132	PLEKHH3	HGNC:26105	ENSG00000068137	GGGCGGAGCGGGCCCGGCGCGGCGGGG
hsa_m5C_4453	chr17	42670109	42670110	-	ENST00000591022	C2252	m5C	C23	5'-GGGCGGAGCGGGCCCGGCGCGGCGGGG-3'	((((.......))))............ ( -8.10)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	27	chr17:42670106-42670132	PLEKHH3	HGNC:26105	ENSG00000068137	GGGCGGAGCGGGCCCGGCGCGGCGGGG
hsa_m5C_4454	chr19	12748039	12748040	+	ENST00000591090	C1085	m5C	C12	5'-GGUGCGGGGGGCAGACAAGG-3'	..(((.....)))....... ( -2.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	20	chr19:12748029-12748048	GET3	HGNC:752	ENSG00000198356	GGUGCGGGGGGCAGACAAGG
hsa_m5C_4455	chr17	75845970	75845971	-	ENST00000591399	C1974	m5C	C9	5'-GGGUGGGGCCGGGAACAAGGG-3'	((......))........... ( -1.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	30872485	21	chr17:75845959-75845979	WBP2	HGNC:12738	ENSG00000132471	GGGUGGGGCCGGGAACAAGGG
hsa_m5C_4456	chr17	75845969	75845970	-	ENST00000591399	C1975	m5C	C10	5'-GGGUGGGGCCGGGAACAAGGG-3'	((......))........... ( -1.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	21	chr17:75845959-75845979	WBP2	HGNC:12738	ENSG00000132471	GGGUGGGGCCGGGAACAAGGG
hsa_m5C_4457	chr19	10652982	10652983	-	ENST00000591501	C893	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	lncRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr19:10652974-10652988	ILF3-DT	HGNC:27115	ENSG00000267100	GGAGGCUGAGGCAGG
hsa_m5C_4458	chr19	10652976	10652977	-	ENST00000591501	C899	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	lncRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr19:10652974-10652988	ILF3-DT	HGNC:27115	ENSG00000267100	GGAGGCUGAGGCAGG
hsa_m5C_4459	chr19	38870124	38870125	-	ENST00000591812	C1243	m5C	C5	5'-GGGGCGGGGCCUCCGGGGGCACAGGGG-3'	(((((...))).))............. ( -5.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;RNAfold:(High)	m6A-Atlas database	28418038	27	chr19:38870103-38870129	RINL	HGNC:24795	ENSG00000187994	GGGGCGGGGCCUCCGGGGGCACAGGGG
hsa_m5C_4460	chr19	44901506	44901507	+	ENST00000592434	C1236	m5C	C7	5'-GGGAGGCCAAGGCGG-3'	.....((....)).. ( -1.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr19:44901501-44901515	TOMM40	HGNC:18001	ENSG00000130204	GGGAGGCCAAGGCGG
hsa_m5C_4461	chr19	44901507	44901508	+	ENST00000592434	C1237	m5C	C8	5'-GGGAGGCCAAGGCGG-3'	.....((....)).. ( -1.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr19:44901501-44901515	TOMM40	HGNC:18001	ENSG00000130204	GGGAGGCCAAGGCGG
hsa_m5C_4462	chr17	44801715	44801716	-	ENST00000592524	C4424	m5C	C12	5'-GGAGGUUGAGGCAGG-3'	NA	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr17:44801713-44801727	GJC1	HGNC:4280	ENSG00000182963	GGAGGUUGAGGCAGG
hsa_m5C_4463	chr17	45104988	45104989	+	ENST00000592782	C1594	m5C	C5	5'-GGGGCAGAGAAG^GUUGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr17:45104985-45104996;45105619-45105623	NMT1	HGNC:7857	ENSG00000136448	GGGGCAGAGAAGGUUGG
hsa_m5C_4464	chr19	9913640	9913641	-	ENST00000593091	C196	m5C	C31	5'-GGGCCAGAGAAGGGACGCGCGGCGGGCGGCCGCGGGG-3'	...((......))....((((((.....))))))... (-13.80)	bulge	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	37	chr19:9913635-9913671	OLFM2	HGNC:17189	ENSG00000105088	GGGCCAGAGAAGGGACGCGCGGCGGGCGGCCGCGGGG
hsa_m5C_4465	chr19	9913638	9913639	-	ENST00000593091	C198	m5C	C33	5'-GGGCCAGAGAAGGGACGCGCGGCGGGCGGCCGCGGGG-3'	...((......))....((((((.....))))))... (-13.80)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	37	chr19:9913635-9913671	OLFM2	HGNC:17189	ENSG00000105088	GGGCCAGAGAAGGGACGCGCGGCGGGCGGCCGCGGGG
hsa_m5C_4466	chr19	57304804	57304805	+	ENST00000593427	C501	m5C	C8	5'-GGGAGGCCGAGGCGGG-3'	......(((...))). ( -1.70)	loop	lncRNA	Muscle	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	16	chr19:57304798-57304813	NA	NA	ENSG00000268205	GGGAGGCCGAGGCGGG
hsa_m5C_4467	chr19	39825821	39825822	-	ENST00000593685	C2252	m5C	C6	5'-GGACUCGGAUGACUGGAGG-3'	...(((.........))). ( -2.10)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	19	chr19:39825809-39825827	DYRK1B	HGNC:3092	ENSG00000105204	GGACUCGGAUGACUGGAGG
hsa_m5C_4468	chr19	40800540	40800541	+	ENST00000593726	C997	m5C	C29	5'-GGGUGGCACCAUGGGCCCGGGCGGUGCCCUCCAUGCCCGGG-3'	((......)).....(((((((((......))..))))))) (-18.00)	loop	mRNA	Testis	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	NA	41	chr19:40800513-40800553	EGLN2	HGNC:14660	ENSG00000269858	GGGUGGCACCAUGGGCCCGGGCGGUGCCCUCCAUGCCCGGG
hsa_m5C_4469	chr19	49835552	49835553	+	ENST00000593767	C1747	m5C	C18	5'-GGGGGGACAGCAGGCACCCCCAGGGCUGGG-3'	(((((...........)))))......... (-10.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	30	chr19:49835536-49835565	MED25	HGNC:28845	ENSG00000104973	GGGGGGACAGCAGGCACCCCCAGGGCUGGG
hsa_m5C_4470	chr19	49835554	49835555	+	ENST00000593767	C1749	m5C	C20	5'-GGGGGGACAGCAGGCACCCCCAGGGCUGGG-3'	(((((...........)))))......... (-10.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	30	chr19:49835536-49835565	MED25	HGNC:28845	ENSG00000104973	GGGGGGACAGCAGGCACCCCCAGGGCUGGG
hsa_m5C_4471	chr19	7477420	7477421	-	ENST00000593942	C800	m5C	C3	5'-GGCAAGCGGAGGGCCAUGG-3'	(((.........))).... ( -3.40)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	19	chr19:7477405-7477423	PEX11G	HGNC:20208	ENSG00000104883	GGCAAGCGGAGGGCCAUGG
hsa_m5C_4472	chr19	4675883	4675884	-	ENST00000593973	C3766	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF;heart	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	15	chr19:4675881-4675895	DPP9	HGNC:18648	ENSG00000142002	GGAGGCUGAGGCAGG
hsa_m5C_4473	chr19	4676025	4676026	-	ENST00000593973	C3624	m5C	C7	5'-GGGAGGCUGAGGCGG-3'	.....((....)).. ( -0.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr19:4676018-4676032	DPP9	HGNC:18648	ENSG00000142002	GGGAGGCUGAGGCGG
hsa_m5C_4474	chr19	4675625	4675626	-	ENST00000593973	C4024	m5C	C38	5'-GGGUCAUGCGGGCCCCACAGGAGAAGCGGCCAGGGCCCGCGGG-3'	.......((((((((....((........)).))))))))... (-19.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	43	chr19:4675621-4675663	DPP9	HGNC:18648	ENSG00000142002	GGGUCAUGCGGGCCCCACAGGAGAAGCGGCCAGGGCCCGCGGG
hsa_m5C_4475	chr19	52064886	52064887	-	ENST00000594440	C3455	m5C	C7	5'-GGGAGGCUGAGGUGGG-3'	NA	loop	mRNA	lung	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	16	chr19:52064878-52064893	ZNF841	HGNC:27611	ENSG00000197608	GGGAGGCUGAGGUGGG
hsa_m5C_4476	chr19	4347352	4347353	-	ENST00000594776	C248	m5C	C12	5'-GGAAGCUGAG^GCAGGAGAAUGG-3'	....((....)).......... ( -0.30)	loop	lncRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr19:4347343-4347354;4353812-4353821	NA	NA	ENSG00000269807	GGAAGCUGAGGCAGGAGAAUGG
hsa_m5C_4477	chr19	17217810	17217811	+	ENST00000595101	C761	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	spleen	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr19:17217806-17217820	USE1	HGNC:30882	ENSG00000053501	GGAGGCUGAGGCAGG
hsa_m5C_4478	chr19	17306230	17306231	+	ENST00000595444	C439	m5C	C3	5'-GGCCCGGGGCAAGGCUCGCGG-3'	...(((((((...)))).))) ( -7.10)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;rG4-seq:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	21	chr19:17306229-17306249	MRPL34	HGNC:14488	ENSG00000130312	GGCCCGGGGCAAGGCUCGCGG
hsa_m5C_4479	chr19	17306231	17306232	+	ENST00000595444	C440	m5C	C4	5'-GGCCCGGGGCAAGGCUCGCGG-3'	...(((((((...)))).))) ( -7.10)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;rG4-seq:(High)	RMBase database;m6A-Atlas database	28418038;30872485	21	chr19:17306229-17306249	MRPL34	HGNC:14488	ENSG00000130312	GGCCCGGGGCAAGGCUCGCGG
hsa_m5C_4480	chr19	17306232	17306233	+	ENST00000595444	C441	m5C	C5	5'-GGCCCGGGGCAAGGCUCGCGG-3'	...(((((((...)))).))) ( -7.10)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;rG4-seq:(High)	RMBase database;m6A-Atlas database	28418038;30872485	21	chr19:17306229-17306249	MRPL34	HGNC:14488	ENSG00000130312	GGCCCGGGGCAAGGCUCGCGG
hsa_m5C_4481	chr19	17306237	17306238	+	ENST00000595444	C446	m5C	C10	5'-GGCCCGGGGCAAGGCUCGCGG-3'	...(((((((...)))).))) ( -7.10)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;rG4-seq:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	21	chr19:17306229-17306249	MRPL34	HGNC:14488	ENSG00000130312	GGCCCGGGGCAAGGCUCGCGG
hsa_m5C_4482	chr19	17101749	17101750	+	ENST00000595618	C185	m5C	C15	5'-GGCAGCUCGGGCCGCCGGGAGCAGG-3'	.((..(((((....))))).))... ( -8.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr19:17101736-17101760	MYO9B	HGNC:7609	ENSG00000099331	GGCAGCUCGGGCCGCCGGGAGCAGG
hsa_m5C_4483	chr19	17205965	17205966	+	ENST00000595618	C5223	m5C	C16	5'-GGGAGGAAG^GGCGAGCCAGG-3'	........((.....))... ( -1.30)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	20	chr19:17205328-17205336;17205960-17205970	MYO9B	HGNC:7609	ENSG00000099331	GGGAGGAAGGGCGAGCCAGG
hsa_m5C_4484	chr19	52876749	52876750	-	ENST00000595635	C5878	m5C	C6	5'-GGAGGCCAAGGUGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	31358969	14	chr19:52876742-52876755	ZNF320	HGNC:13842	ENSG00000182986	GGAGGCCAAGGUGG
hsa_m5C_4485	chr19	52876748	52876749	-	ENST00000595635	C5879	m5C	C7	5'-GGAGGCCAAGGUGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	14	chr19:52876742-52876755	ZNF320	HGNC:13842	ENSG00000182986	GGAGGCCAAGGUGG
hsa_m5C_4486	chr19	52878367	52878368	-	ENST00000595635	C4260	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr19:52878359-52878373	ZNF320	HGNC:13842	ENSG00000182986	GGAGGCUGAGGCAGG
hsa_m5C_4487	chr19	52878361	52878362	-	ENST00000595635	C4266	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr19:52878359-52878373	ZNF320	HGNC:13842	ENSG00000182986	GGAGGCUGAGGCAGG
hsa_m5C_4488	chr19	16551872	16551873	-	ENST00000595753	C3090	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr19:16551864-16551878	SLC35E1	HGNC:20803	ENSG00000127526	GGAGGCUGAGGCAGG
hsa_m5C_4489	chr19	16551996	16551997	-	ENST00000595753	C2966	m5C	C7	5'-GGGAGGCUGAGGUGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr19:16551989-16552003	SLC35E1	HGNC:20803	ENSG00000127526	GGGAGGCUGAGGUGG
hsa_m5C_4490	chr19	58479722	58479723	+	ENST00000596341	C2928	m5C	C25	5'-GGAGAAGUACGGCACAGUGGUCUCCCUGG^G-3'	(((((..(((......))).)))))..... ( -8.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr19:58479699-58479727;58479930-58479930	ZNF446	HGNC:21036	ENSG00000083838	GGAGAAGUACGGCACAGUGGUCUCCCUGGG
hsa_m5C_4491	chr19	52598056	52598057	-	ENST00000596451	C286	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	lncRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr19:52598054-52598068	NA	NA	ENSG00000268970	GGAGGCUGAGGCAGG
hsa_m5C_4492	chr13	98395325	98395326	+	ENST00000596580	C1364	m5C	C26	5'-GGAACCGAAGGUUUCCGCCGGGGAGCCGGG-3'	((((((...))))))..((((....)))). (-11.60)	loop	mRNA	HeLa,siControl;T24;HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	28418038;38168991;31061524;22344696	30	chr13:98395301-98395330	FARP1	HGNC:3591	ENSG00000152767	GGAACCGAAGGUUUCCGCCGGGGAGCCGGG
hsa_m5C_4493	chr19	48390526	48390527	-	ENST00000597017	C329	m5C	C7	5'-GGACCACAGGAAUUUCAGGGAAGAGCCAGG-3'	........((..((((...))))..))... ( -1.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr19:48390504-48390533	KDELR1	HGNC:6304	ENSG00000105438	GGACCACAGGAAUUUCAGGGAAGAGCCAGG
hsa_m5C_4494	chr19	17943817	17943818	+	ENST00000597436	C882	m5C	C23	5'-GGGUCACAGAGCGUUCCGGGGGCCAAGGCGCCGGGCCCCGGGG-3'	..............(((((((.((........)).))))))). (-19.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	43	chr19:17943796-17943838	CCDC124	HGNC:25171	ENSG00000007080	GGGUCACAGAGCGUUCCGGGGGCCAAGGCGCCGGGCCCCGGGG
hsa_m5C_4495	chr19	17943818	17943819	+	ENST00000597436	C883	m5C	C24	5'-GGGUCACAGAGCGUUCCGGGGGCCAAGGCGCCGGGCCCCGGGG-3'	..............(((((((.((........)).))))))). (-19.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	43	chr19:17943796-17943838	CCDC124	HGNC:25171	ENSG00000007080	GGGUCACAGAGCGUUCCGGGGGCCAAGGCGCCGGGCCCCGGGG
hsa_m5C_4496	chr19	17943830	17943831	+	ENST00000597436	C895	m5C	C36	5'-GGGUCACAGAGCGUUCCGGGGGCCAAGGCGCCGGGCCCCGGGG-3'	..............(((((((.((........)).))))))). (-19.20)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	43	chr19:17943796-17943838	CCDC124	HGNC:25171	ENSG00000007080	GGGUCACAGAGCGUUCCGGGGGCCAAGGCGCCGGGCCCCGGGG
hsa_m5C_4497	chr19	17943831	17943832	+	ENST00000597436	C896	m5C	C37	5'-GGGUCACAGAGCGUUCCGGGGGCCAAGGCGCCGGGCCCCGGGG-3'	..............(((((((.((........)).))))))). (-19.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	43	chr19:17943796-17943838	CCDC124	HGNC:25171	ENSG00000007080	GGGUCACAGAGCGUUCCGGGGGCCAAGGCGCCGGGCCCCGGGG
hsa_m5C_4498	chr19	17943832	17943833	+	ENST00000597436	C897	m5C	C38	5'-GGGUCACAGAGCGUUCCGGGGGCCAAGGCGCCGGGCCCCGGGG-3'	..............(((((((.((........)).))))))). (-19.20)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	43	chr19:17943796-17943838	CCDC124	HGNC:25171	ENSG00000007080	GGGUCACAGAGCGUUCCGGGGGCCAAGGCGCCGGGCCCCGGGG
hsa_m5C_4499	chr19	17943833	17943834	+	ENST00000597436	C898	m5C	C39	5'-GGGUCACAGAGCGUUCCGGGGGCCAAGGCGCCGGGCCCCGGGG-3'	..............(((((((.((........)).))))))). (-19.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	43	chr19:17943796-17943838	CCDC124	HGNC:25171	ENSG00000007080	GGGUCACAGAGCGUUCCGGGGGCCAAGGCGCCGGGCCCCGGGG
hsa_m5C_4500	chr19	6375439	6375440	-	ENST00000597721	C3619	m5C	C10	5'-GGCCUGGCGCUGGCCCGG-3'	((((.......))))... ( -6.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	18	chr19:6375432-6375449	PSPN	HGNC:9579	ENSG00000125650	GGCCUGGCGCUGGCCCGG
hsa_m5C_4501	chr19	6375435	6375436	-	ENST00000597721	C3623	m5C	C14	5'-GGCCUGGCGCUGGCCCGG-3'	((((.......))))... ( -6.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	18	chr19:6375432-6375449	PSPN	HGNC:9579	ENSG00000125650	GGCCUGGCGCUGGCCCGG
hsa_m5C_4502	chr19	6375434	6375435	-	ENST00000597721	C3624	m5C	C15	5'-GGCCUGGCGCUGGCCCGG-3'	((((.......))))... ( -6.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	18	chr19:6375432-6375449	PSPN	HGNC:9579	ENSG00000125650	GGCCUGGCGCUGGCCCGG
hsa_m5C_4503	chr19	6375433	6375434	-	ENST00000597721	C3625	m5C	C16	5'-GGCCUGGCGCUGGCCCGG-3'	((((.......))))... ( -6.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	18	chr19:6375432-6375449	PSPN	HGNC:9579	ENSG00000125650	GGCCUGGCGCUGGCCCGG
hsa_m5C_4504	chr19	58554966	58554967	-	ENST00000597848	C24	m5C	C22	5'-GGUGAGUGGCCCCUGCUGGACCGUGG-3'	(((.(((((...)))))..))).... ( -5.60)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr19:58554963-58554988	CHMP2A	HGNC:30216	ENSG00000130724	GGUGAGUGGCCCCUGCUGGACCGUGG
hsa_m5C_4505	chr19	18543530	18543531	-	ENST00000597960	C47	m5C	C6	5'-GGGGGCGGGGAGGGGGGCGCAGGACCCCAAGUGGGG-3'	(((((((..........)))....))))........ ( -9.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	36	chr19:18543501-18543536	FKBP8	HGNC:3724	ENSG00000105701	GGGGGCGGGGAGGGGGGCGCAGGACCCCAAGUGGGG
hsa_m5C_4506	chr19	52651821	52651822	-	ENST00000598322	C2845	m5C	C6	5'-GGAGGCCAAGGCAGG-3'	....((....))... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr19:52651813-52651827	NA	NA	ENSG00000269825	GGAGGCCAAGGCAGG
hsa_m5C_4507	chr19	52651820	52651821	-	ENST00000598322	C2846	m5C	C7	5'-GGAGGCCAAGGCAGG-3'	....((....))... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr19:52651813-52651827	NA	NA	ENSG00000269825	GGAGGCCAAGGCAGG
hsa_m5C_4508	chr19	52651165	52651166	-	ENST00000598322	C3501	m5C	C14	5'-GGAUUGGGAACAACAGGAUGAGUGG-3'	NA	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr19:52651155-52651179	NA	NA	ENSG00000269825	GGAUUGGGAACAACAGGAUGAGUGG
hsa_m5C_4509	chr19	49090338	49090339	+	ENST00000598441	C392	m5C	C5	5'-GGAGCGCAUGGAGAGGAAA^AGACGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chr19:49090335-49090353;49090466-49090471	SNRNP70	HGNC:11150	ENSG00000104852	GGAGCGCAUGGAGAGGAAAAGACGG
hsa_m5C_4510	chr19	49090340	49090341	+	ENST00000598441	C394	m5C	C7	5'-GGAGCGCAUGGAGAGGAAA^AGACGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chr19:49090335-49090353;49090466-49090471	SNRNP70	HGNC:11150	ENSG00000104852	GGAGCGCAUGGAGAGGAAAAGACGG
hsa_m5C_4511	chr19	49104722	49104723	+	ENST00000598441	C761	m5C	C6	5'-GGAGGCCCCGGCGG-3'	((.....))..... ( -0.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	14	chr19:49104718-49104731	SNRNP70	HGNC:11150	ENSG00000104852	GGAGGCCCCGGCGG
hsa_m5C_4512	chr19	49104723	49104724	+	ENST00000598441	C762	m5C	C7	5'-GGAGGCCCCGGCGG-3'	((.....))..... ( -0.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr19:49104718-49104731	SNRNP70	HGNC:11150	ENSG00000104852	GGAGGCCCCGGCGG
hsa_m5C_4513	chr19	49108035	49108036	+	ENST00000598441	C1103	m5C	C21	5'-GGGAGCGGGCCCGGCGGGAGCGGG-3'	(((......))).((....))... ( -5.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	22344696	24	chr19:49108016-49108039	SNRNP70	HGNC:11150	ENSG00000104852	GGGAGCGGGCCCGGCGGGAGCGGG
hsa_m5C_4514	chr19	55484238	55484239	+	ENST00000598519	C3314	m5C	C16	5'-GGCCCCGCGGGGCUCCCCGG-3'	(((((....)))))...... ( -8.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr19:55484224-55484243	ZNF628	HGNC:28054	ENSG00000197483	GGCCCCGCGGGGCUCCCCGG
hsa_m5C_4515	chr19	55476668	55476669	+	ENST00000598519	C53	m5C	C6	5'-GGGGGCCGUUGGGAGGG-3'	.....((....)).... ( -1.40)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	17	chr19:55476664-55476680	ZNF628	HGNC:28054	ENSG00000197483	GGGGGCCGUUGGGAGGG
hsa_m5C_4516	chr19	55476669	55476670	+	ENST00000598519	C54	m5C	C7	5'-GGGGGCCGUUGGGAGGG-3'	.....((....)).... ( -1.40)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	17	chr19:55476664-55476680	ZNF628	HGNC:28054	ENSG00000197483	GGGGGCCGUUGGGAGGG
hsa_m5C_4517	chr19	41871981	41871982	+	ENST00000598742	C1078	m5C	C4	5'-GGGCCUGGGGCCUGCACAGGCUGAAUGG-3'	.((((((.........))))))...... ( -9.40)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr19:41871979-41872006	RPS19	HGNC:10402	ENSG00000105372	GGGCCUGGGGCCUGCACAGGCUGAAUGG
hsa_m5C_4518	chr19	41871982	41871983	+	ENST00000598742	C1079	m5C	C5	5'-GGGCCUGGGGCCUGCACAGGCUGAAUGG-3'	.((((((.........))))))...... ( -9.40)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	28	chr19:41871979-41872006	RPS19	HGNC:10402	ENSG00000105372	GGGCCUGGGGCCUGCACAGGCUGAAUGG
hsa_m5C_4519	chr1	1716388	1716389	-	ENST00000598846	C3179	m5C	C15	5'-GGGAAUGGGAAAGACAGAAGAGAAGGGAAAUGGCAAGGG-3'	NA	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	39	chr1:1716365-1716403	NA	NA	ENSG00000268575	GGGAAUGGGAAAGACAGAAGAGAAGGGAAAUGGCAAGGG
hsa_m5C_4520	chr19	39457719	39457720	+	ENST00000599117	C654	m5C	C12	5'-GGAGGAUGGAGCAGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr19:39457709-39457725	SUPT5H	HGNC:11469	ENSG00000196235	GGAGGAUGGAGCAGAGG
hsa_m5C_4521	chr19	39459903	39459904	+	ENST00000599117	C935	m5C	C10	5'-GGGGAGGAACGG-3'	NA	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	12	chr19:39459895-39459906	SUPT5H	HGNC:11469	ENSG00000196235	GGGGAGGAACGG
hsa_m5C_4522	chrX	49175492	49175493	-	ENST00000599218	C2104	m5C	C3	5'-GGCUGGAGUGCAGUGGUGUGAUCAGG-3'	.((((.....))))............ ( -3.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chrX:49175470-49175495	PRICKLE3	HGNC:6645	ENSG00000012211	GGCUGGAGUGCAGUGGUGUGAUCAGG
hsa_m5C_4523	chrX	49175484	49175485	-	ENST00000599218	C2112	m5C	C11	5'-GGCUGGAGUGCAGUGGUGUGAUCAGG-3'	.((((.....))))............ ( -3.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	26	chrX:49175470-49175495	PRICKLE3	HGNC:6645	ENSG00000012211	GGCUGGAGUGCAGUGGUGUGAUCAGG
hsa_m5C_4524	chr19	39125860	39125861	+	ENST00000599386	C28	m5C	C9	5'-GGGAGGCGCGAGGGCGCGG-3'	.....((((....)))).. ( -7.60)	bulge	mRNA	frontal_cortex;frontal_cortex,HeLa	RNA-BisSeq:(High),m5C-RIP-seq:(Medium);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	19	chr19:39125853-39125871	PAK4	HGNC:16059	ENSG00000130669	GGGAGGCGCGAGGGCGCGG
hsa_m5C_4525	chrX	52187746	52187747	+	ENST00000599522	C1292	m5C	C11	5'-GGUGCGGGCUCAGUUGGCCCCUCGG-3'	.....(((((.....)))))..... ( -7.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chrX:52187737-52187761	MAGED4	HGNC:23793	ENSG00000154545	GGUGCGGGCUCAGUUGGCCCCUCGG
hsa_m5C_4526	chr19	41898568	41898569	+	ENST00000599846	C1542	m5C	C8	5'-GGUGAAGCGGCAGGAGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	17	chr19:41898562-41898578	ARHGEF1	HGNC:681	ENSG00000076928	GGUGAAGCGGCAGGAGG
hsa_m5C_4527	chr19	15109021	15109022	+	ENST00000600252	C190	m5C	C13	5'-GGCAGUGAGGGGCUGGGUGGG-3'	..((((.....))))...... ( -3.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	21	chr19:15109010-15109030	SYDE1	HGNC:25824	ENSG00000105137	GGCAGUGAGGGGCUGGGUGGG
hsa_m5C_4528	chr19	15110174	15110175	+	ENST00000600252	C1343	m5C	C14	5'-GGGGAGGCCAGGGCCCGAACAGGGCCACUGCGAGGGG-3'	......((.(((((((.....))))).))))...... (-14.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	37	chr19:15110162-15110198	SYDE1	HGNC:25824	ENSG00000105137	GGGGAGGCCAGGGCCCGAACAGGGCCACUGCGAGGGG
hsa_m5C_4529	chr19	15110175	15110176	+	ENST00000600252	C1344	m5C	C15	5'-GGGGAGGCCAGGGCCCGAACAGGGCCACUGCGAGGGG-3'	......((.(((((((.....))))).))))...... (-14.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	37	chr19:15110162-15110198	SYDE1	HGNC:25824	ENSG00000105137	GGGGAGGCCAGGGCCCGAACAGGGCCACUGCGAGGGG
hsa_m5C_4530	chr19	15110185	15110186	+	ENST00000600252	C1354	m5C	C25	5'-GGGGAGGCCAGGGCCCGAACAGGGCCACUGCGAGGGG-3'	......((.(((((((.....))))).))))...... (-14.80)	bulge	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	37	chr19:15110162-15110198	SYDE1	HGNC:25824	ENSG00000105137	GGGGAGGCCAGGGCCCGAACAGGGCCACUGCGAGGGG
hsa_m5C_4531	chr19	15109908	15109909	+	ENST00000600252	C1077	m5C	C7	5'-GGGGGGCCCCGGGCCGGCAGCAGGGCCUGGGGG-3'	......(((((((((........))))))))). (-21.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	33	chr19:15109903-15109935	SYDE1	HGNC:25824	ENSG00000105137	GGGGGGCCCCGGGCCGGCAGCAGGGCCUGGGGG
hsa_m5C_4532	chr19	15109909	15109910	+	ENST00000600252	C1078	m5C	C8	5'-GGGGGGCCCCGGGCCGGCAGCAGGGCCUGGGGG-3'	......(((((((((........))))))))). (-21.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	33	chr19:15109903-15109935	SYDE1	HGNC:25824	ENSG00000105137	GGGGGGCCCCGGGCCGGCAGCAGGGCCUGGGGG
hsa_m5C_4533	chr19	15109910	15109911	+	ENST00000600252	C1079	m5C	C9	5'-GGGGGGCCCCGGGCCGGCAGCAGGGCCUGGGGG-3'	......(((((((((........))))))))). (-21.70)	loop	mRNA	HeLa,rip antibody: ALYREF;HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	33	chr19:15109903-15109935	SYDE1	HGNC:25824	ENSG00000105137	GGGGGGCCCCGGGCCGGCAGCAGGGCCUGGGGG
hsa_m5C_4534	chr19	15109915	15109916	+	ENST00000600252	C1084	m5C	C14	5'-GGGGGGCCCCGGGCCGGCAGCAGGGCCUGGGGG-3'	......(((((((((........))))))))). (-21.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	33	chr19:15109903-15109935	SYDE1	HGNC:25824	ENSG00000105137	GGGGGGCCCCGGGCCGGCAGCAGGGCCUGGGGG
hsa_m5C_4535	chr19	48620450	48620451	-	ENST00000600303	C177	m5C	C3	5'-GGCUGGUAGGAGCAAGG-3'	.(((......))).... ( -3.00)	loop	lncRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	17	chr19:48620437-48620453	NA	NA	ENSG00000268093	GGCUGGUAGGAGCAAGG
hsa_m5C_4536	chr19	48874268	48874269	+	ENST00000600406	C1485	m5C	C11	5'-GGUGUAUUGGCCAGGAGAGG-3'	(((......)))........ ( -3.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr19:48874259-48874278	PPP1R15A	HGNC:14375	ENSG00000087074	GGUGUAUUGGCCAGGAGAGG
hsa_m5C_4537	chr19	48874269	48874270	+	ENST00000600406	C1486	m5C	C12	5'-GGUGUAUUGGCCAGGAGAGG-3'	(((......)))........ ( -3.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr19:48874259-48874278	PPP1R15A	HGNC:14375	ENSG00000087074	GGUGUAUUGGCCAGGAGAGG
hsa_m5C_4538	chr19	6424512	6424513	-	ENST00000600480	C299	m5C	C3	5'-GGCGGAGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	30872485	11	chr19:6424505-6424515	KHSRP	HGNC:6316	ENSG00000088247	GGCGGAGGCGG
hsa_m5C_4539	chr19	6424506	6424507	-	ENST00000600480	C305	m5C	C9	5'-GGCGGAGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	11	chr19:6424505-6424515	KHSRP	HGNC:6316	ENSG00000088247	GGCGGAGGCGG
hsa_m5C_4540	chr19	43527178	43527179	-	ENST00000600651	C23	m5C	C6	5'-GGGCGCGAUGGCGGAGGCUGUACUGAGG-3'	...(((....)))............... ( -4.00)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	28	chr19:43527157-43527184	ETHE1	HGNC:23287	ENSG00000105755	GGGCGCGAUGGCGGAGGCUGUACUGAGG
hsa_m5C_4541	chr19	51002453	51002454	-	ENST00000600767	C258	m5C	C18	5'-GGGUGGGCGGUGAAGGGCAGAUGAGGG-3'	......((........))......... ( -1.70)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;RNAfold:(High)	RMBase database	28418038	27	chr19:51002445-51002471	KLK8	HGNC:6369	ENSG00000129455	GGGUGGGCGGUGAAGGGCAGAUGAGGG
hsa_m5C_4542	chrX	154411826	154411827	+	ENST00000601016	C289	m5C	C20	5'-GGGGCGCUGGGAGCGCCGGCCGCGGGCCGGGUGGG-3'	..((((((...))))))((((...))))....... (-16.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	35	chrX:154411808-154411842	TAFAZZIN	HGNC:11577	ENSG00000102125	GGGGCGCUGGGAGCGCCGGCCGCGGGCCGGGUGGG
hsa_m5C_4543	chr11	70820405	70820406	-	ENST00000601538	C1716	m5C	C13	5'-GGCUGGGCGGCGCAGG-3'	.(((....)))..... ( -1.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr11:70820403-70820418	SHANK2	HGNC:14295	ENSG00000162105	GGCUGGGCGGCGCAGG
hsa_m5C_4544	chr16	67682288	67682289	-	ENST00000602279	C3652	m5C	C7	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr16:67682281-67682295	GFOD2	HGNC:28159	ENSG00000141098	GGGAGGCCGAGGCGG
hsa_m5C_4545	chr16	67682287	67682288	-	ENST00000602279	C3653	m5C	C8	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr16:67682281-67682295	GFOD2	HGNC:28159	ENSG00000141098	GGGAGGCCGAGGCGG
hsa_m5C_4546	chr16	67682282	67682283	-	ENST00000602279	C3658	m5C	C13	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr16:67682281-67682295	GFOD2	HGNC:28159	ENSG00000141098	GGGAGGCCGAGGCGG
hsa_m5C_4547	chr3	169764849	169764850	-	ENST00000602385	C211	m5C	C6	5'-GGGGACCUGCGGCGG-3'	NA	loop	lncRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr3:169764841-169764855	TERC	HGNC:11727	ENSG00000270141	GGGGACCUGCGGCGG
hsa_m5C_4548	chr1	109100497	109100498	+	ENST00000602755	C306	m5C	C5	5'-GGUCCCCGAGGUCCCGGAGCUGG-3'	(((..(((......))).))).. ( -3.60)	loop	lncRNA	HeLa	Aza-IP:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	23604283	23	chr1:109100494-109100516	NA	NA	ENSG00000270066	GGUCCCCGAGGUCCCGGAGCUGG
hsa_m5C_4549	chr1	109100499	109100500	+	ENST00000602755	C308	m5C	C7	5'-GGUCCCCGAGGUCCCGGAGCUGG-3'	(((..(((......))).))).. ( -3.60)	loop	lncRNA	HeLa	Aza-IP:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	23604283	23	chr1:109100494-109100516	NA	NA	ENSG00000270066	GGUCCCCGAGGUCCCGGAGCUGG
hsa_m5C_4550	chr1	109100506	109100507	+	ENST00000602755	C315	m5C	C14	5'-GGUCCCCGAGGUCCCGGAGCUGG-3'	(((..(((......))).))).. ( -3.60)	loop	lncRNA	HeLa	Aza-IP:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	23604283	23	chr1:109100494-109100516	NA	NA	ENSG00000270066	GGUCCCCGAGGUCCCGGAGCUGG
hsa_m5C_4551	chr1	109100507	109100508	+	ENST00000602755	C316	m5C	C15	5'-GGUCCCCGAGGUCCCGGAGCUGG-3'	(((..(((......))).))).. ( -3.60)	loop	lncRNA	frontal_cortex,heart,293T,liver,lung,Muscle,spleen,Testis;HeLa	Aza-IP:(High);UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	23604283;28418038;38168991	23	chr1:109100494-109100516	NA	NA	ENSG00000270066	GGUCCCCGAGGUCCCGGAGCUGG
hsa_m5C_4552	chr1	145957850	145957851	-	ENST00000604000	C167	m5C	C4	5'-GGCCCGGAGUGACUGGGG-3'	..(((((.....))))). ( -6.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr1:145957837-145957854	LIX1L	HGNC:28715	ENSG00000271601	GGCCCGGAGUGACUGGGG
hsa_m5C_4553	chr1	145957849	145957850	-	ENST00000604000	C168	m5C	C5	5'-GGCCCGGAGUGACUGGGG-3'	..(((((.....))))). ( -6.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr1:145957837-145957854	LIX1L	HGNC:28715	ENSG00000271601	GGCCCGGAGUGACUGGGG
hsa_m5C_4554	chr12	121830313	121830314	+	ENST00000604567	C6215	m5C	C12	5'-GGCCCCGGGGCCCGG-3'	((((....))))... ( -6.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr12:121830303-121830317	SETD1B	HGNC:29187	ENSG00000139718	GGCCCCGGGGCCCGG
hsa_m5C_4555	chr1	154962002	154962003	+	ENST00000605085	C179	m5C	C12	5'-GGGCGGUGGAGCCGCCGCGGAGGG-3'	.((((((...))))))........ (-10.60)	bulge	lncRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr1:154961992-154962015	PYGO2-AS1	HGNC:55250	ENSG00000271380	GGGCGGUGGAGCCGCCGCGGAGGG
hsa_m5C_4556	chr1	54200316	54200317	+	ENST00000605337	C122	m5C	C13	5'-GGGGCUUCGGGGCCCCGAGACGCGGGGCGUAUGAGUGGGG-3'	...((((....((((((.....))))))....)))).... (-15.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	30872485	40	chr1:54200305-54200344	MRPL37	HGNC:14034	ENSG00000116221	GGGGCUUCGGGGCCCCGAGACGCGGGGCGUAUGAGUGGGG
hsa_m5C_4557	chr1	54200317	54200318	+	ENST00000605337	C123	m5C	C14	5'-GGGGCUUCGGGGCCCCGAGACGCGGGGCGUAUGAGUGGGG-3'	...((((....((((((.....))))))....)))).... (-15.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	40	chr1:54200305-54200344	MRPL37	HGNC:14034	ENSG00000116221	GGGGCUUCGGGGCCCCGAGACGCGGGGCGUAUGAGUGGGG
hsa_m5C_4558	chr1	54200318	54200319	+	ENST00000605337	C124	m5C	C15	5'-GGGGCUUCGGGGCCCCGAGACGCGGGGCGUAUGAGUGGGG-3'	...((((....((((((.....))))))....)))).... (-15.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	40	chr1:54200305-54200344	MRPL37	HGNC:14034	ENSG00000116221	GGGGCUUCGGGGCCCCGAGACGCGGGGCGUAUGAGUGGGG
hsa_m5C_4559	chr1	54200319	54200320	+	ENST00000605337	C125	m5C	C16	5'-GGGGCUUCGGGGCCCCGAGACGCGGGGCGUAUGAGUGGGG-3'	...((((....((((((.....))))))....)))).... (-15.50)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	40	chr1:54200305-54200344	MRPL37	HGNC:14034	ENSG00000116221	GGGGCUUCGGGGCCCCGAGACGCGGGGCGUAUGAGUGGGG
hsa_m5C_4560	chr7	128657111	128657112	+	ENST00000605862	C10919	m5C	C4	5'-GGGCCCCCAUCCCCAGGGGUAGGGGCCGUAGGG-3'	.((((((.((((....)))).))))))...... (-19.80)	loop	lncRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	33	chr7:128657109-128657141	NA	NA	ENSG00000242588	GGGCCCCCAUCCCCAGGGGUAGGGGCCGUAGGG
hsa_m5C_4561	chr7	128657112	128657113	+	ENST00000605862	C10920	m5C	C5	5'-GGGCCCCCAUCCCCAGGGGUAGGGGCCGUAGGG-3'	.((((((.((((....)))).))))))...... (-19.80)	loop	lncRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	33	chr7:128657109-128657141	NA	NA	ENSG00000242588	GGGCCCCCAUCCCCAGGGGUAGGGGCCGUAGGG
hsa_m5C_4562	chr7	128657113	128657114	+	ENST00000605862	C10921	m5C	C6	5'-GGGCCCCCAUCCCCAGGGGUAGGGGCCGUAGGG-3'	.((((((.((((....)))).))))))...... (-19.80)	loop	lncRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	33	chr7:128657109-128657141	NA	NA	ENSG00000242588	GGGCCCCCAUCCCCAGGGGUAGGGGCCGUAGGG
hsa_m5C_4563	chr7	128657114	128657115	+	ENST00000605862	C10922	m5C	C7	5'-GGGCCCCCAUCCCCAGGGGUAGGGGCCGUAGGG-3'	.((((((.((((....)))).))))))...... (-19.80)	loop	lncRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	33	chr7:128657109-128657141	NA	NA	ENSG00000242588	GGGCCCCCAUCCCCAGGGGUAGGGGCCGUAGGG
hsa_m5C_4564	chr7	128657115	128657116	+	ENST00000605862	C10923	m5C	C8	5'-GGGCCCCCAUCCCCAGGGGUAGGGGCCGUAGGG-3'	.((((((.((((....)))).))))))...... (-19.80)	loop	lncRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	33	chr7:128657109-128657141	NA	NA	ENSG00000242588	GGGCCCCCAUCCCCAGGGGUAGGGGCCGUAGGG
hsa_m5C_4565	chr6	13591721	13591722	+	ENST00000606117	C641	m5C	C14	5'-GGGUGUGGGAGUUCUACCACUACCGGCGGGAGGUCAUGGG-3'	.(((((((........)))).)))(((.....)))..... (-12.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	40	chr6:13591709-13591748	SIRT5	HGNC:14933	ENSG00000124523	GGGUGUGGGAGUUCUACCACUACCGGCGGGAGGUCAUGGG
hsa_m5C_4566	chr1	47997291	47997292	-	ENST00000606738	C94	m5C	C12	5'-GGGCUCGGGGGCAGCCGG-3'	.((((.......)))).. ( -4.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	18	chr1:47997286-47997303	TRABD2B	HGNC:44200	ENSG00000269113	GGGCUCGGGGGCAGCCGG
hsa_m5C_4567	chr1	179919162	179919163	+	ENST00000606911	C2894	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr1:179919158-179919172	TOR1AIP1	HGNC:29456	ENSG00000143337	GGAGGCUGAGGCAGG
hsa_m5C_4568	chr1	179919168	179919169	+	ENST00000606911	C2900	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr1:179919158-179919172	TOR1AIP1	HGNC:29456	ENSG00000143337	GGAGGCUGAGGCAGG
hsa_m5C_4569	chr6	149863656	149863657	+	ENST00000606915	C164	m5C	C6	5'-GGCCGCCGGCGCCCGCAGGAAGCUGG-3'	.....(((((..((...))..))))) ( -7.60)	loop	lncRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr6:149863652-149863677	NA	NA	ENSG00000268592	GGCCGCCGGCGCCCGCAGGAAGCUGG
hsa_m5C_4570	chr6	149863662	149863663	+	ENST00000606915	C170	m5C	C12	5'-GGCCGCCGGCGCCCGCAGGAAGCUGG-3'	.....(((((..((...))..))))) ( -7.60)	loop	lncRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr6:149863652-149863677	NA	NA	ENSG00000268592	GGCCGCCGGCGCCCGCAGGAAGCUGG
hsa_m5C_4571	chr1	1615743	1615744	-	ENST00000607222	C52	m5C	C4	5'-GGGCUGCUGGGCCAGCGGGAGCGGG-3'	..(((.(((......))).)))... ( -8.80)	loop	lncRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	25	chr1:1615723-1615747	NA	NA	ENSG00000272106	GGGCUGCUGGGCCAGCGGGAGCGGG
hsa_m5C_4572	chr19	39492630	39492631	+	ENST00000607714	C3889	m5C	C7	5'-GGGAGACCGAGGCGGGUGGAUCACCUG-3'	((....))....((((((...)))))) ( -7.80)	bulge	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	27	chr19:39492625-39492651	TIMM50	HGNC:23656	ENSG00000105197	GGGAGACCGAGGCGGGUGGAUCACCUG
hsa_m5C_4573	chr19	39492631	39492632	+	ENST00000607714	C3890	m5C	C8	5'-GGGAGACCGAGGCGGGUGGAUCACCUG-3'	((....))....((((((...)))))) ( -7.80)	bulge	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	27	chr19:39492625-39492651	TIMM50	HGNC:23656	ENSG00000105197	GGGAGACCGAGGCGGGUGGAUCACCUG
hsa_m5C_4574	chr19	39492636	39492637	+	ENST00000607714	C3895	m5C	C13	5'-GGGAGACCGAGGCGGGUGGAUCACCUG-3'	((....))....((((((...)))))) ( -7.80)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	27	chr19:39492625-39492651	TIMM50	HGNC:23656	ENSG00000105197	GGGAGACCGAGGCGGGUGGAUCACCUG
hsa_m5C_4575	chr9	120793235	120793236	-	ENST00000608872	C85	m5C	C15	5'-GGCUGCGGAGCGGACCCGG-3'	((((((...)))).))... ( -5.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr9:120793232-120793250	FBXW2	HGNC:13608	ENSG00000119402	GGCUGCGGAGCGGACCCGG
hsa_m5C_4576	chr9	120793234	120793235	-	ENST00000608872	C86	m5C	C16	5'-GGCUGCGGAGCGGACCCGG-3'	((((((...)))).))... ( -5.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr9:120793232-120793250	FBXW2	HGNC:13608	ENSG00000119402	GGCUGCGGAGCGGACCCGG
hsa_m5C_4577	chr9	120793233	120793234	-	ENST00000608872	C87	m5C	C17	5'-GGCUGCGGAGCGGACCCGG-3'	((((((...)))).))... ( -5.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr9:120793232-120793250	FBXW2	HGNC:13608	ENSG00000119402	GGCUGCGGAGCGGACCCGG
hsa_m5C_4578	chr16	684145	684146	-	ENST00000609261	C111	m5C	C25	5'-GGGCGACGGCGGGUG^GCGCCCGGGCGGGCCGGGGG-3'	..((.((.....)).)).(((((.....))))).. (-15.50)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	35	chr16:684136-684155;684234-684248	JMJD8	HGNC:14148	ENSG00000161999	GGGCGACGGCGGGUGGCGCCCGGGCGGGCCGGGGG
hsa_m5C_4579	chr16	684141	684142	-	ENST00000609261	C115	m5C	C29	5'-GGGCGACGGCGGGUG^GCGCCCGGGCGGGCCGGGGG-3'	..((.((.....)).)).(((((.....))))).. (-15.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	35	chr16:684136-684155;684234-684248	JMJD8	HGNC:14148	ENSG00000161999	GGGCGACGGCGGGUGGCGCCCGGGCGGGCCGGGGG
hsa_m5C_4580	chr16	684140	684141	-	ENST00000609261	C116	m5C	C30	5'-GGGCGACGGCGGGUG^GCGCCCGGGCGGGCCGGGGG-3'	..((.((.....)).)).(((((.....))))).. (-15.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	35	chr16:684136-684155;684234-684248	JMJD8	HGNC:14148	ENSG00000161999	GGGCGACGGCGGGUGGCGCCCGGGCGGGCCGGGGG
hsa_m5C_4581	chr1	179877789	179877790	-	ENST00000609928	C14	m5C	C10	5'-GGGCCGCGGCGGCCGCUGG-3'	.(((((...)))))..... ( -8.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	19	chr1:179877781-179877799	TOR1AIP2	HGNC:24055	ENSG00000169905	GGGCCGCGGCGGCCGCUGG
hsa_m5C_4582	chr1	179877785	179877786	-	ENST00000609928	C18	m5C	C14	5'-GGGCCGCGGCGGCCGCUGG-3'	.(((((...)))))..... ( -8.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr1:179877781-179877799	TOR1AIP2	HGNC:24055	ENSG00000169905	GGGCCGCGGCGGCCGCUGG
hsa_m5C_4583	chr1	92299114	92299115	+	ENST00000610020	C57	m5C	C12	5'-GGCCGCAAGGCCGGGG-3'	((((....)))).... ( -8.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	16	chr1:92299104-92299119	RPAP2	HGNC:25791	ENSG00000122484	GGCCGCAAGGCCGGGG
hsa_m5C_4584	chr1	92388810	92388811	+	ENST00000610020	C3654	m5C	C18	5'-GGGACGUGGGAGCUUGGCGGG-3'	....(((.((...)).))).. ( -1.80)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;HeLa,siControl;HeLa	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	21	chr1:92388794-92388814	RPAP2	HGNC:25791	ENSG00000122484	GGGACGUGGGAGCUUGGCGGG
hsa_m5C_4585	chr19	54460952	54460953	+	ENST00000610347	C4727	m5C	C14	5'-GGAGGGGCGGGGGCAGG-3'	......((....))... ( -1.60)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	17	chr19:54460940-54460956	LENG8	HGNC:15500	ENSG00000167615	GGAGGGGCGGGGGCAGG
hsa_m5C_4586	chr19	54454594	54454595	+	ENST00000610347	C647	m5C	C3	5'-GGCCCGCCACGGGCCAGGCCUAUGGG-3'	((((((...))))))........... (-12.00)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	26	chr19:54454593-54454618	LENG8	HGNC:15500	ENSG00000167615	GGCCCGCCACGGGCCAGGCCUAUGGG
hsa_m5C_4587	chr19	54454595	54454596	+	ENST00000610347	C648	m5C	C4	5'-GGCCCGCCACGGGCCAGGCCUAUGGG-3'	((((((...))))))........... (-12.00)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	26	chr19:54454593-54454618	LENG8	HGNC:15500	ENSG00000167615	GGCCCGCCACGGGCCAGGCCUAUGGG
hsa_m5C_4588	chr19	54454596	54454597	+	ENST00000610347	C649	m5C	C5	5'-GGCCCGCCACGGGCCAGGCCUAUGGG-3'	((((((...))))))........... (-12.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;30872485	26	chr19:54454593-54454618	LENG8	HGNC:15500	ENSG00000167615	GGCCCGCCACGGGCCAGGCCUAUGGG
hsa_m5C_4589	chr19	54454605	54454606	+	ENST00000610347	C658	m5C	C14	5'-GGCCCGCCACGGGCCAGGCCUAUGGG-3'	((((((...))))))........... (-12.00)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	26	chr19:54454593-54454618	LENG8	HGNC:15500	ENSG00000167615	GGCCCGCCACGGGCCAGGCCUAUGGG
hsa_m5C_4590	chr1	54226327	54226328	-	ENST00000610401	C2356	m5C	C13	5'-GGCCAGAGGGGCCGG-3'	((((.....)))).. ( -7.40)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	15	chr1:54226326-54226340	SSBP3	HGNC:15674	ENSG00000157216	GGCCAGAGGGGCCGG
hsa_m5C_4591	chr19	39342493	39342494	+	ENST00000610417	C74	m5C	C18	5'-GGGAGGAGGGAGGGGAGCUUGCGGGCCCGAGAGGGG-3'	(((......(((.....))).....)))........ ( -6.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	36	chr19:39342477-39342512	SAMD4B	HGNC:25492	ENSG00000179134	GGGAGGAGGGAGGGGAGCUUGCGGGCCCGAGAGGGG
hsa_m5C_4592	chr9	133338558	133338559	-	ENST00000610672	C4131	m5C	C7	5'-GGGAGGCCGAGGCGGG-3'	......(((...))). ( -1.70)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr9:133338550-133338565	MED22	HGNC:11477	ENSG00000148297	GGGAGGCCGAGGCGGG
hsa_m5C_4593	chr9	133341173	133341174	-	ENST00000610672	C1516	m5C	C38	5'-GGGGAUCUCAGCAGUGGGGCAGGAGGGUGCCUGAUUUCGGGG-3'	......(((...(((.(((((......))))).)))..))). (-11.10)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038;31061524	42	chr9:133341170-133341211	MED22	HGNC:11477	ENSG00000148297	GGGGAUCUCAGCAGUGGGGCAGGAGGGUGCCUGAUUUCGGGG
hsa_m5C_4594	chr16	1769459	1769460	+	ENST00000610761	C4795	m5C	C11	5'-GGCCCGGCUCCCUGGGG-3'	..(((((....))))). ( -6.60)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr16:1769450-1769466	MAPK8IP3	HGNC:6884	ENSG00000138834	GGCCCGGCUCCCUGGGG
hsa_m5C_4595	chr19	56103189	56103190	-	ENST00000610935	C162	m5C	C6	5'-GGUCUCCGGGGCCGCUGG-3'	(((((...)))))..... ( -5.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr19:56103178-56103195	ZNF787	HGNC:26998	ENSG00000142409	GGUCUCCGGGGCCGCUGG
hsa_m5C_4596	chr19	56103188	56103189	-	ENST00000610935	C163	m5C	C7	5'-GGUCUCCGGGGCCGCUGG-3'	(((((...)))))..... ( -5.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr19:56103178-56103195	ZNF787	HGNC:26998	ENSG00000142409	GGUCUCCGGGGCCGCUGG
hsa_m5C_4597	chr19	56103182	56103183	-	ENST00000610935	C169	m5C	C13	5'-GGUCUCCGGGGCCGCUGG-3'	(((((...)))))..... ( -5.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr19:56103178-56103195	ZNF787	HGNC:26998	ENSG00000142409	GGUCUCCGGGGCCGCUGG
hsa_m5C_4598	chr19	44813471	44813472	+	ENST00000611077	C690	m5C	C13	5'-GGUCCGGGAGGCCUCGG-3'	...(((((....))))) ( -5.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr19:44813460-44813476	BCAM	HGNC:6722	ENSG00000187244	GGUCCGGGAGGCCUCGG
hsa_m5C_4599	chr12	120117198	120117199	+	ENST00000611079	C293	m5C	C37	5'-GGGCUCGCACGAGCUCCGGGUUUCCAGAGGCAGGGGCCGGGG-3'	.(((((....)))))((.((((((........)))))).)). (-16.10)	loop	lncRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	42	chr12:120117163-120117204	RAB35-AS1	HGNC:56348	ENSG00000277283	GGGCUCGCACGAGCUCCGGGUUUCCAGAGGCAGGGGCCGGGG
hsa_m5C_4600	chr12	120117199	120117200	+	ENST00000611079	C294	m5C	C38	5'-GGGCUCGCACGAGCUCCGGGUUUCCAGAGGCAGGGGCCGGGG-3'	.(((((....)))))((.((((((........)))))).)). (-16.10)	loop	lncRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	42	chr12:120117163-120117204	RAB35-AS1	HGNC:56348	ENSG00000277283	GGGCUCGCACGAGCUCCGGGUUUCCAGAGGCAGGGGCCGGGG
hsa_m5C_4601	chr5	159209432	159209433	-	ENST00000611185	C134	m5C	C22	5'-GGACGAUGGUGACCGUACGGGCCGG-3'	((.((((((...)))).))..)).. ( -5.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr5:159209430-159209454	RNF145	HGNC:20853	ENSG00000145860	GGACGAUGGUGACCGUACGGGCCGG
hsa_m5C_4602	chr5	159209431	159209432	-	ENST00000611185	C135	m5C	C23	5'-GGACGAUGGUGACCGUACGGGCCGG-3'	((.((((((...)))).))..)).. ( -5.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr5:159209430-159209454	RNF145	HGNC:20853	ENSG00000145860	GGACGAUGGUGACCGUACGGGCCGG
hsa_m5C_4603	chr5	159209477	159209478	-	ENST00000611185	C89	m5C	C16	5'-GGCUGCUAAGGGGCUCGG-3'	((((.......))))... ( -2.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	18	chr5:159209476-159209493	RNF145	HGNC:20853	ENSG00000145860	GGCUGCUAAGGGGCUCGG
hsa_m5C_4604	chr6	150865923	150865924	+	ENST00000611279	C246	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	11	chr6:150865922-150865932	MTHFD1L	HGNC:21055	ENSG00000120254	GGCGGCGGCGG
hsa_m5C_4605	chr6	150865926	150865927	+	ENST00000611279	C249	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	11	chr6:150865922-150865932	MTHFD1L	HGNC:21055	ENSG00000120254	GGCGGCGGCGG
hsa_m5C_4606	chr6	150865929	150865930	+	ENST00000611279	C252	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	11	chr6:150865922-150865932	MTHFD1L	HGNC:21055	ENSG00000120254	GGCGGCGGCGG
hsa_m5C_4607	chr7	76286795	76286796	+	ENST00000611745	C3126	m5C	C18	5'-GGGAGUGGAGACGGGUCCCUGGGGAGGG-3'	((((.((....))..))))......... ( -5.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	28	chr7:76286779-76286806	SRRM3	HGNC:26729	ENSG00000177679	GGGAGUGGAGACGGGUCCCUGGGGAGGG
hsa_m5C_4608	chrX	48983788	48983789	-	ENST00000611757	C1132	m5C	C8	5'-GGAAUUACAGGAGGCUCGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	19	chrX:48983778-48983796	GRIPAP1	HGNC:18706	ENSG00000068400	GGAAUUACAGGAGGCUCGG
hsa_m5C_4609	chr17	3663573	3663574	-	ENST00000611779	C624	m5C	C10	5'-GGCCUGGGGCCUCUGG-3'	((((...))))..... ( -5.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	16	chr17:3663568-3663583	TAX1BP3	HGNC:30684	ENSG00000213977	GGCCUGGGGCCUCUGG
hsa_m5C_4610	chr17	3663572	3663573	-	ENST00000611779	C625	m5C	C11	5'-GGCCUGGGGCCUCUGG-3'	((((...))))..... ( -5.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	16	chr17:3663568-3663583	TAX1BP3	HGNC:30684	ENSG00000213977	GGCCUGGGGCCUCUGG
hsa_m5C_4611	chr17	3663570	3663571	-	ENST00000611779	C627	m5C	C13	5'-GGCCUGGGGCCUCUGG-3'	((((...))))..... ( -5.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	16	chr17:3663568-3663583	TAX1BP3	HGNC:30684	ENSG00000213977	GGCCUGGGGCCUCUGG
hsa_m5C_4612	chr17	3663624	3663625	-	ENST00000611779	C573	m5C	C4	5'-GGUCCCAGAGGCCUGGCCUGG-3'	((..((((....))))))... ( -5.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	21	chr17:3663608-3663628	TAX1BP3	HGNC:30684	ENSG00000213977	GGUCCCAGAGGCCUGGCCUGG
hsa_m5C_4613	chr17	3663623	3663624	-	ENST00000611779	C574	m5C	C5	5'-GGUCCCAGAGGCCUGGCCUGG-3'	((..((((....))))))... ( -5.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	21	chr17:3663608-3663628	TAX1BP3	HGNC:30684	ENSG00000213977	GGUCCCAGAGGCCUGGCCUGG
hsa_m5C_4614	chr17	3663622	3663623	-	ENST00000611779	C575	m5C	C6	5'-GGUCCCAGAGGCCUGGCCUGG-3'	((..((((....))))))... ( -5.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	21	chr17:3663608-3663628	TAX1BP3	HGNC:30684	ENSG00000213977	GGUCCCAGAGGCCUGGCCUGG
hsa_m5C_4615	chr17	3663616	3663617	-	ENST00000611779	C581	m5C	C12	5'-GGUCCCAGAGGCCUGGCCUGG-3'	((..((((....))))))... ( -5.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	21	chr17:3663608-3663628	TAX1BP3	HGNC:30684	ENSG00000213977	GGUCCCAGAGGCCUGGCCUGG
hsa_m5C_4616	chr17	3663615	3663616	-	ENST00000611779	C582	m5C	C13	5'-GGUCCCAGAGGCCUGGCCUGG-3'	((..((((....))))))... ( -5.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	21	chr17:3663608-3663628	TAX1BP3	HGNC:30684	ENSG00000213977	GGUCCCAGAGGCCUGGCCUGG
hsa_m5C_4617	chr17	37515570	37515571	-	ENST00000612223	C7377	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	31358969	15	chr17:37515568-37515582	SYNRG	HGNC:557	ENSG00000275066	GGAGGCUGAGGCAGG
hsa_m5C_4618	chr20	63700269	63700270	-	ENST00000612256	C1346	m5C	C6	5'-GGCAUCCGGAGGCUUUGGAGGGGAGUCUGG-3'	.....(((((..((((...))))..))))) ( -6.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr20:63700246-63700275	ARFRP1	HGNC:662	ENSG00000101246	GGCAUCCGGAGGCUUUGGAGGGGAGUCUGG
hsa_m5C_4619	chr2	238848207	238848208	+	ENST00000612363	C124	m5C	C4	5'-GGGCGGGCGCCAUGGAGGAGG-3'	.(((....))).......... ( -4.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	21	chr2:238848205-238848225	TWIST2	HGNC:20670	ENSG00000233608	GGGCGGGCGCCAUGGAGGAGG
hsa_m5C_4620	chr2	238848211	238848212	+	ENST00000612363	C128	m5C	C8	5'-GGGCGGGCGCCAUGGAGGAGG-3'	.(((....))).......... ( -4.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	21	chr2:238848205-238848225	TWIST2	HGNC:20670	ENSG00000233608	GGGCGGGCGCCAUGGAGGAGG
hsa_m5C_4621	chr2	238848213	238848214	+	ENST00000612363	C130	m5C	C10	5'-GGGCGGGCGCCAUGGAGGAGG-3'	.(((....))).......... ( -4.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	21	chr2:238848205-238848225	TWIST2	HGNC:20670	ENSG00000233608	GGGCGGGCGCCAUGGAGGAGG
hsa_m5C_4622	chr2	238848214	238848215	+	ENST00000612363	C131	m5C	C11	5'-GGGCGGGCGCCAUGGAGGAGG-3'	.(((....))).......... ( -4.00)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	21	chr2:238848205-238848225	TWIST2	HGNC:20670	ENSG00000233608	GGGCGGGCGCCAUGGAGGAGG
hsa_m5C_4623	chr17	50140098	50140099	-	ENST00000612501	C2024	m5C	C12	5'-GGGGAGGAUGACGAGGAG^ACGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	22	chr17:50139578-50139581;50140093-50140110	PPP1R9B	HGNC:9298	ENSG00000108819	GGGGAGGAUGACGAGGAGACGG
hsa_m5C_4624	chr6	113859941	113859942	+	ENST00000612661	C763	m5C	C3	5'-GGCCGCGGAGGGAGAGG-3'	..((......))..... ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	17	chr6:113859940-113859956	MARCKS	HGNC:6759	ENSG00000277443	GGCCGCGGAGGGAGAGG
hsa_m5C_4625	chr6	113859942	113859943	+	ENST00000612661	C764	m5C	C4	5'-GGCCGCGGAGGGAGAGG-3'	..((......))..... ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	17	chr6:113859940-113859956	MARCKS	HGNC:6759	ENSG00000277443	GGCCGCGGAGGGAGAGG
hsa_m5C_4626	chr6	113859944	113859945	+	ENST00000612661	C766	m5C	C6	5'-GGCCGCGGAGGGAGAGG-3'	..((......))..... ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	17	chr6:113859940-113859956	MARCKS	HGNC:6759	ENSG00000277443	GGCCGCGGAGGGAGAGG
hsa_m5C_4627	chr2	171339235	171339236	-	ENST00000612742	C695	m5C	C5	5'-GGACCUAUGGAGACUGGAUUGUUUCCUGG-3'	....(((.((((((......))))))))) ( -8.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr2:171339212-171339240	METTL8	HGNC:25856	ENSG00000123600	GGACCUAUGGAGACUGGAUUGUUUCCUGG
hsa_m5C_4628	chr22	38296892	38296893	-	ENST00000612795	C2572	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr22:38296884-38296898	CSNK1E	HGNC:2453	ENSG00000213923	GGAGGCUGAGGCAGG
hsa_m5C_4629	chr8	142669951	142669952	-	ENST00000612905	C16	m5C	C10	5'-GGCCGGCGGCGG-3'	.(((...))).. ( -2.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	12	chr8:142669950-142669961	JRK	HGNC:6199	ENSG00000234616	GGCCGGCGGCGG
hsa_m5C_4630	chr15	80059768	80059769	+	ENST00000613266	C202	m5C	C13	5'-GGCGGCUACCGGCGG-3'	.((........)).. ( -1.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	15	chr15:80059757-80059771	ZFAND6	HGNC:30164	ENSG00000086666	GGCGGCUACCGGCGG
hsa_m5C_4631	chr10	70114168	70114169	-	ENST00000613322	C1348	m5C	C8	5'-GGAGAGGCCAGGCGG-3'	((.....))...... ( -0.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr10:70114162-70114176	AIFM2	HGNC:21411	ENSG00000042286	GGAGAGGCCAGGCGG
hsa_m5C_4632	chr10	70114167	70114168	-	ENST00000613322	C1349	m5C	C9	5'-GGAGAGGCCAGGCGG-3'	((.....))...... ( -0.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr10:70114162-70114176	AIFM2	HGNC:21411	ENSG00000042286	GGAGAGGCCAGGCGG
hsa_m5C_4633	chr10	70114163	70114164	-	ENST00000613322	C1353	m5C	C13	5'-GGAGAGGCCAGGCGG-3'	((.....))...... ( -0.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr10:70114162-70114176	AIFM2	HGNC:21411	ENSG00000042286	GGAGAGGCCAGGCGG
hsa_m5C_4634	chr5	150026829	150026830	+	ENST00000613459	C2323	m5C	C4	5'-GGGCGAGGCAGCAGCAUGGGACUGCCCAGG-3'	(((((...((......))....)))))... ( -8.60)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	30	chr5:150026827-150026856	HMGXB3	HGNC:28982	ENSG00000113716	GGGCGAGGCAGCAGCAUGGGACUGCCCAGG
hsa_m5C_4635	chr1	23760728	23760729	+	ENST00000613537	C3508	m5C	C3	5'-GGCAGGAUUUGGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	15	chr1:23760727-23760741	ELOA	HGNC:11620	ENSG00000011007	GGCAGGAUUUGGAGG
hsa_m5C_4636	chr14	21477256	21477257	+	ENST00000613569	C255	m5C	C31	5'-GGGGGCGGUGGGAGCGAUGAGGGUCUGAGACGGUGGG-3'	.....((.((.....(((....))).....)).)).. ( -2.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	37	chr14:21477227-21477263	TOX4	HGNC:20161	ENSG00000092203	GGGGGCGGUGGGAGCGAUGAGGGUCUGAGACGGUGGG
hsa_m5C_4637	chr7	100784698	100784699	+	ENST00000613979	C6895	m5C	C13	5'-GGACCUGGAUGGCCGG-3'	((.((.....)))).. ( -4.30)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr7:100784687-100784702	ZAN	HGNC:12857	ENSG00000146839	GGACCUGGAUGGCCGG
hsa_m5C_4638	chr7	100784699	100784700	+	ENST00000613979	C6896	m5C	C14	5'-GGACCUGGAUGGCCGG-3'	((.((.....)))).. ( -4.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	16	chr7:100784687-100784702	ZAN	HGNC:12857	ENSG00000146839	GGACCUGGAUGGCCGG
hsa_m5C_4639	chr11	6475792	6475793	-	ENST00000614314	C2736	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr11:6475790-6475804	ARFIP2	HGNC:17160	ENSG00000132254	GGAGGCUGAGGCAGG
hsa_m5C_4640	chr17	49404500	49404501	-	ENST00000614445	C1479	m5C	C6	5'-GGUGCCGGGGAGGGGCAGAGAGG-3'	..((((.......))))...... ( -5.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	23	chr17:49404484-49404506	PHB1	HGNC:8912	ENSG00000167085	GGUGCCGGGGAGGGGCAGAGAGG
hsa_m5C_4641	chr17	36602197	36602198	+	ENST00000614766	C616	m5C	C9	5'-GGCCCCGGCCUUGGAGAGAGG-3'	(((....)))........... ( -3.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr17:36602190-36602210	MRM1	HGNC:26202	ENSG00000278619	GGCCCCGGCCUUGGAGAGAGG
hsa_m5C_4642	chr17	37478016	37478017	+	ENST00000615182	C2528	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr17:37478012-37478026	TADA2A	HGNC:11531	ENSG00000276234	GGAGGCUGAGGCAGG
hsa_m5C_4643	chr19	1087108	1087109	-	ENST00000615234	C2319	m5C	C7	5'-GGGAGGCUGAGGCGG-3'	.....((....)).. ( -0.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr19:1087101-1087115	POLR2E	HGNC:9192	ENSG00000099817	GGGAGGCUGAGGCGG
hsa_m5C_4644	chr19	1087102	1087103	-	ENST00000615234	C2325	m5C	C13	5'-GGGAGGCUGAGGCGG-3'	.....((....)).. ( -0.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr19:1087101-1087115	POLR2E	HGNC:9192	ENSG00000099817	GGGAGGCUGAGGCGG
hsa_m5C_4645	chr19	1088472	1088473	-	ENST00000615234	C955	m5C	C14	5'-GGUCACCUGGGGGCAGCUGGUGCCGGG-3'	((.((((.((......))))))))... ( -8.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	27	chr19:1088460-1088486	POLR2E	HGNC:9192	ENSG00000099817	GGUCACCUGGGGGCAGCUGGUGCCGGG
hsa_m5C_4646	chr11	113277506	113277507	+	ENST00000615285	C5141	m5C	C7	5'-GGGUGUCUGAGACCGGGAGGGCCCAGCAGUGAGGG-3'	((((.((((....))))...))))........... ( -8.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	35	chr11:113277501-113277535	NCAM1	HGNC:7656	ENSG00000149294	GGGUGUCUGAGACCGGGAGGGCCCAGCAGUGAGGG
hsa_m5C_4647	chr15	22999614	22999615	-	ENST00000615383	C3306	m5C	C13	5'-GGAGUUUGAGGCCAGCCUGGGCAACAUGG-3'	......((..(((......)))..))... ( -5.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr15:22999599-22999627	TUBGCP5	HGNC:18600	ENSG00000275835	GGAGUUUGAGGCCAGCCUGGGCAACAUGG
hsa_m5C_4648	chr4	94665248	94665249	+	ENST00000615540	C3241	m5C	C8	5'-GGGAGGCCAAGACGGGCGG-3'	.....(((......))).. ( -4.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr4:94665242-94665260	PDLIM5	HGNC:17468	ENSG00000163110	GGGAGGCCAAGACGGGCGG
hsa_m5C_4649	chr5	81474546	81474547	-	ENST00000615665	C503	m5C	C17	5'-G^GCACUUGGAGGUGUCCCAGG-3'	((((((....))))))..... ( -5.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr5:81474543-81474562;81489250-81489250	SSBP2	HGNC:15831	ENSG00000145687	GGCACUUGGAGGUGUCCCAGG
hsa_m5C_4650	chr2	54645240	54645241	+	ENST00000615901	C4537	m5C	C8	5'-GGAGAAUCAGAUGGAAGUGCGGAAGAAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr2:54645234-54645262	SPTBN1	HGNC:11275	ENSG00000115306	GGAGAAUCAGAUGGAAGUGCGGAAGAAGG
hsa_m5C_4651	chr1	86746766	86746767	+	ENST00000616170	C5047	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Testis;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	22344696	15	chr1:86746762-86746776	SH3GLB1	HGNC:10833	ENSG00000097033	GGAGGCUGAGGCAGG
hsa_m5C_4652	chr1	86746772	86746773	+	ENST00000616170	C5053	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr1:86746762-86746776	SH3GLB1	HGNC:10833	ENSG00000097033	GGAGGCUGAGGCAGG
hsa_m5C_4653	chr16	30006804	30006805	-	ENST00000616445	C1050	m5C	C25	5'-GGCUGCCAUGGACGUCAACGGUUACUCGG-3'	(((((...((.....)).)))))...... ( -1.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr16:30006801-30006829	DOC2A	HGNC:2985	ENSG00000149927	GGCUGCCAUGGACGUCAACGGUUACUCGG
hsa_m5C_4654	chr6	52267884	52267885	-	ENST00000616552	C2259	m5C	C4	5'-GGACCAGGAGCAGAAGAGGAAGAG^AAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr6:52266693-52266696;52267865-52267888	MCM3	HGNC:6945	ENSG00000112118	GGACCAGGAGCAGAAGAGGAAGAGAAGG
hsa_m5C_4655	chr6	52267883	52267884	-	ENST00000616552	C2260	m5C	C5	5'-GGACCAGGAGCAGAAGAGGAAGAG^AAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr6:52266693-52266696;52267865-52267888	MCM3	HGNC:6945	ENSG00000112118	GGACCAGGAGCAGAAGAGGAAGAGAAGG
hsa_m5C_4656	chr6	52267877	52267878	-	ENST00000616552	C2266	m5C	C11	5'-GGACCAGGAGCAGAAGAGGAAGAG^AAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr6:52266693-52266696;52267865-52267888	MCM3	HGNC:6945	ENSG00000112118	GGACCAGGAGCAGAAGAGGAAGAGAAGG
hsa_m5C_4657	chr6	52273818	52273819	-	ENST00000616552	C1679	m5C	C15	5'-GGAUCAGAUGGAUCCUGAGCAGGAUCGG-3'	..........((((((....)))))).. ( -7.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr6:52273806-52273833	MCM3	HGNC:6945	ENSG00000112118	GGAUCAGAUGGAUCCUGAGCAGGAUCGG
hsa_m5C_4658	chr6	52273813	52273814	-	ENST00000616552	C1684	m5C	C20	5'-GGAUCAGAUGGAUCCUGAGCAGGAUCGG-3'	..........((((((....)))))).. ( -7.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr6:52273806-52273833	MCM3	HGNC:6945	ENSG00000112118	GGAUCAGAUGGAUCCUGAGCAGGAUCGG
hsa_m5C_4659	chr19	4493770	4493771	+	ENST00000616600	C801	m5C	C7	5'-GGUGGCCAUGGCGCGG-3'	.(((.......))).. ( -1.70)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	16	chr19:4493765-4493780	HDGFL2	HGNC:14680	ENSG00000167674	GGUGGCCAUGGCGCGG
hsa_m5C_4660	chr11	45869787	45869788	+	ENST00000616623	C1250	m5C	C6	5'-GGGACCUCUGGGUCAGCUGGGAGAGCGGGG-3'	..((((....)))).(((.....))).... ( -7.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	30	chr11:45869783-45869812	CRY2	HGNC:2385	ENSG00000121671	GGGACCUCUGGGUCAGCUGGGAGAGCGGGG
hsa_m5C_4661	chr10	15097359	15097360	+	ENST00000616640	C181	m5C	C20	5'-GGCGCAGGCGCACUGGGCGCCGG-3'	(((((.((....))..))))).. ( -9.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr10:15097341-15097363	RPP38	HGNC:30329	ENSG00000152464	GGCGCAGGCGCACUGGGCGCCGG
hsa_m5C_4662	chr10	15097360	15097361	+	ENST00000616640	C182	m5C	C21	5'-GGCGCAGGCGCACUGGGCGCCGG-3'	(((((.((....))..))))).. ( -9.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	23	chr10:15097341-15097363	RPP38	HGNC:30329	ENSG00000152464	GGCGCAGGCGCACUGGGCGCCGG
hsa_m5C_4663	chr3	50269300	50269301	+	ENST00000616701	C155	m5C	C28	5'-GGCCUGGCCCUGCUCUGGGCAGUGGGGCUGGGG-3'	..((((((((((((......)))))))))))). (-19.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	33	chr3:50269274-50269306	SEMA3B	HGNC:10724	ENSG00000012171	GGCCUGGCCCUGCUCUGGGCAGUGGGGCUGGGG
hsa_m5C_4664	chr17	38510687	38510688	+	ENST00000616767	C4580	m5C	C3	5'-GGCGGCGCCGGAGCAGCUGG-3'	..((((((....)).)))). ( -5.70)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	20	chr17:38510686-38510705	ARHGAP23	HGNC:29293	ENSG00000275832	GGCGGCGCCGGAGCAGCUGG
hsa_m5C_4665	chr17	38510690	38510691	+	ENST00000616767	C4583	m5C	C6	5'-GGCGGCGCCGGAGCAGCUGG-3'	..((((((....)).)))). ( -5.70)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	20	chr17:38510686-38510705	ARHGAP23	HGNC:29293	ENSG00000275832	GGCGGCGCCGGAGCAGCUGG
hsa_m5C_4666	chr17	38510692	38510693	+	ENST00000616767	C4585	m5C	C8	5'-GGCGGCGCCGGAGCAGCUGG-3'	..((((((....)).)))). ( -5.70)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	20	chr17:38510686-38510705	ARHGAP23	HGNC:29293	ENSG00000275832	GGCGGCGCCGGAGCAGCUGG
hsa_m5C_4667	chr17	38510693	38510694	+	ENST00000616767	C4586	m5C	C9	5'-GGCGGCGCCGGAGCAGCUGG-3'	..((((((....)).)))). ( -5.70)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	20	chr17:38510686-38510705	ARHGAP23	HGNC:29293	ENSG00000275832	GGCGGCGCCGGAGCAGCUGG
hsa_m5C_4668	chr17	38510497	38510498	+	ENST00000616767	C4390	m5C	C28	5'-GGGCCGCCCAGACGGCGAGGGCGCGGGCCGGGG-3'	((.((((((..........)).)))).)).... (-14.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	33	chr17:38510471-38510503	ARHGAP23	HGNC:29293	ENSG00000275832	GGGCCGCCCAGACGGCGAGGGCGCGGGCCGGGG
hsa_m5C_4669	chr17	38466581	38466582	+	ENST00000616767	C1287	m5C	C4	5'-GGGCGGGGGAGAGACGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr17:38466579-38466595	ARHGAP23	HGNC:29293	ENSG00000275832	GGGCGGGGGAGAGACGG
hsa_m5C_4670	chr17	17303762	17303763	+	ENST00000616989	C429	m5C	C7	5'-GGAGGACCGGCGCGG-3'	......(((...))) ( -0.80)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr17:17303757-17303771	NT5M	HGNC:15769	ENSG00000205309	GGAGGACCGGCGCGG
hsa_m5C_4671	chr17	17303763	17303764	+	ENST00000616989	C430	m5C	C8	5'-GGAGGACCGGCGCGG-3'	......(((...))) ( -0.80)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	15	chr17:17303757-17303771	NT5M	HGNC:15769	ENSG00000205309	GGAGGACCGGCGCGG
hsa_m5C_4672	chr17	38561794	38561795	-	ENST00000617146	C1615	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	11	chr17:38561787-38561797	SRCIN1	HGNC:29506	ENSG00000277363	GGCGGCGGCGG
hsa_m5C_4673	chr3	188883495	188883496	+	ENST00000617246	C11141	m5C	C6	5'-GGAGGCCGAGGCGAGCGG-3'	....((....))...... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	18	chr3:188883491-188883508	LPP	HGNC:6679	ENSG00000145012	GGAGGCCGAGGCGAGCGG
hsa_m5C_4674	chr3	188883496	188883497	+	ENST00000617246	C11142	m5C	C7	5'-GGAGGCCGAGGCGAGCGG-3'	....((....))...... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	18	chr3:188883491-188883508	LPP	HGNC:6679	ENSG00000145012	GGAGGCCGAGGCGAGCGG
hsa_m5C_4675	chr3	188883501	188883502	+	ENST00000617246	C11147	m5C	C12	5'-GGAGGCCGAGGCGAGCGG-3'	....((....))...... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	18	chr3:188883491-188883508	LPP	HGNC:6679	ENSG00000145012	GGAGGCCGAGGCGAGCGG
hsa_m5C_4676	chr3	188883505	188883506	+	ENST00000617246	C11151	m5C	C16	5'-GGAGGCCGAGGCGAGCGG-3'	....((....))...... ( -1.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	18	chr3:188883491-188883508	LPP	HGNC:6679	ENSG00000145012	GGAGGCCGAGGCGAGCGG
hsa_m5C_4677	chr3	188883631	188883632	+	ENST00000617246	C11277	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr3:188883627-188883641	LPP	HGNC:6679	ENSG00000145012	GGAGGCUGAGGCAGG
hsa_m5C_4678	chr3	188883637	188883638	+	ENST00000617246	C11283	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr3:188883627-188883641	LPP	HGNC:6679	ENSG00000145012	GGAGGCUGAGGCAGG
hsa_m5C_4679	chr3	188881038	188881039	+	ENST00000617246	C8684	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr3:188881034-188881048	LPP	HGNC:6679	ENSG00000145012	GGAGGCUGAGGCAGG
hsa_m5C_4680	chr3	188881044	188881045	+	ENST00000617246	C8690	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr3:188881034-188881048	LPP	HGNC:6679	ENSG00000145012	GGAGGCUGAGGCAGG
hsa_m5C_4681	chr3	188880894	188880895	+	ENST00000617246	C8540	m5C	C7	5'-GGGAGGCCAAGGCGG-3'	.....((....)).. ( -1.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr3:188880889-188880903	LPP	HGNC:6679	ENSG00000145012	GGGAGGCCAAGGCGG
hsa_m5C_4682	chr3	188880895	188880896	+	ENST00000617246	C8541	m5C	C8	5'-GGGAGGCCAAGGCGG-3'	.....((....)).. ( -1.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr3:188880889-188880903	LPP	HGNC:6679	ENSG00000145012	GGGAGGCCAAGGCGG
hsa_m5C_4683	chr3	188880900	188880901	+	ENST00000617246	C8546	m5C	C13	5'-GGGAGGCCAAGGCGG-3'	.....((....)).. ( -1.70)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	15	chr3:188880889-188880903	LPP	HGNC:6679	ENSG00000145012	GGGAGGCCAAGGCGG
hsa_m5C_4684	chr8	38970658	38970659	+	ENST00000617275	C2277	m5C	C3	5'-GGCGUGGUGGUGCAGG-3'	.(((......)))... ( -0.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr8:38970657-38970672	PLEKHA2	HGNC:14336	ENSG00000169499	GGCGUGGUGGUGCAGG
hsa_m5C_4685	chr5	58454448	58454449	-	ENST00000617412	C2330	m5C	C7	5'-GGCCUGCUGGACUGGUUGG-3'	((((.........)))).. ( -2.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr5:58454437-58454455	PLK2	HGNC:19699	ENSG00000145632	GGCCUGCUGGACUGGUUGG
hsa_m5C_4686	chr4	1172622	1172623	-	ENST00000617421	C543	m5C	C13	5'-GGCCCGGGGCGCCGGCCUCGG-3'	...(((((((....))))))) (-13.10)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	21	chr4:1172615-1172635	SPON2	HGNC:11253	ENSG00000159674	GGCCCGGGGCGCCGGCCUCGG
hsa_m5C_4687	chr2	232523817	232523818	+	ENST00000617714	C1270	m5C	C20	5'-GGGAGCUUCUGGCCUGGGACCCCCCCCAGG-3'	............((((((......)))))) (-10.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr2:232523799-232523828	PRSS56	HGNC:39433	ENSG00000237412	GGGAGCUUCUGGCCUGGGACCCCCCCCAGG
hsa_m5C_4688	chr2	232523818	232523819	+	ENST00000617714	C1271	m5C	C21	5'-GGGAGCUUCUGGCCUGGGACCCCCCCCAGG-3'	............((((((......)))))) (-10.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr2:232523799-232523828	PRSS56	HGNC:39433	ENSG00000237412	GGGAGCUUCUGGCCUGGGACCCCCCCCAGG
hsa_m5C_4689	chr2	232523819	232523820	+	ENST00000617714	C1272	m5C	C22	5'-GGGAGCUUCUGGCCUGGGACCCCCCCCAGG-3'	............((((((......)))))) (-10.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr2:232523799-232523828	PRSS56	HGNC:39433	ENSG00000237412	GGGAGCUUCUGGCCUGGGACCCCCCCCAGG
hsa_m5C_4690	chr2	232525547	232525548	+	ENST00000617714	C2065	m5C	C17	5'-GGGAGGACCUACUGCUCCCAGGGGCUGAGAGGGGUUCGGG-3'	(((((.........)))))..(((((......)))))... (-12.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	40	chr2:232525532-232525571	PRSS56	HGNC:39433	ENSG00000237412	GGGAGGACCUACUGCUCCCAGGGGCUGAGAGGGGUUCGGG
hsa_m5C_4691	chr2	232525555	232525556	+	ENST00000617714	C2073	m5C	C25	5'-GGGAGGACCUACUGCUCCCAGGGGCUGAGAGGGGUUCGGG-3'	(((((.........)))))..(((((......)))))... (-12.50)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	40	chr2:232525532-232525571	PRSS56	HGNC:39433	ENSG00000237412	GGGAGGACCUACUGCUCCCAGGGGCUGAGAGGGGUUCGGG
hsa_m5C_4692	chr19	54137909	54137910	+	ENST00000617930	C129	m5C	C4	5'-GGGCCCGGGGCGCGAGAAAAAGGCGGCGGG-3'	...((((...(((.........))).)))) ( -8.70)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	30	chr19:54137907-54137936	CNOT3	HGNC:7879	ENSG00000088038	GGGCCCGGGGCGCGAGAAAAAGGCGGCGGG
hsa_m5C_4693	chr19	54137910	54137911	+	ENST00000617930	C130	m5C	C5	5'-GGGCCCGGGGCGCGAGAAAAAGGCGGCGGG-3'	...((((...(((.........))).)))) ( -8.70)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	30	chr19:54137907-54137936	CNOT3	HGNC:7879	ENSG00000088038	GGGCCCGGGGCGCGAGAAAAAGGCGGCGGG
hsa_m5C_4694	chr19	54137911	54137912	+	ENST00000617930	C131	m5C	C6	5'-GGGCCCGGGGCGCGAGAAAAAGGCGGCGGG-3'	...((((...(((.........))).)))) ( -8.70)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	30	chr19:54137907-54137936	CNOT3	HGNC:7879	ENSG00000088038	GGGCCCGGGGCGCGAGAAAAAGGCGGCGGG
hsa_m5C_4695	chr16	89962110	89962111	+	ENST00000617948	C1338	m5C	C8	5'-GGAGGAGCUGGUGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	14	chr16:89962104-89962117	DEF8	HGNC:25969	ENSG00000140995	GGAGGAGCUGGUGG
hsa_m5C_4696	chr9	133362210	133362211	-	ENST00000618229	C2439	m5C	C10	5'-GGGGACAGGCUGG-3'	NA	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	13	chr9:133362208-133362220	SURF4	HGNC:11476	ENSG00000148248	GGGGACAGGCUGG
hsa_m5C_4697	chr1	939303	939304	+	ENST00000618323	C1599	m5C	C12	5'-GGGAGCUGGGGCCCAGCAUGGCCCCGGAG-3'	.....((((((((......)))))))).. (-16.80)	bulge	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	29	chr1:939293-939321	SAMD11	HGNC:28706	ENSG00000187634	GGGAGCUGGGGCCCAGCAUGGCCCCGGAG
hsa_m5C_4698	chr1	939304	939305	+	ENST00000618323	C1600	m5C	C13	5'-GGGAGCUGGGGCCCAGCAUGGCCCCGGAG-3'	.....((((((((......)))))))).. (-16.80)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	29	chr1:939293-939321	SAMD11	HGNC:28706	ENSG00000187634	GGGAGCUGGGGCCCAGCAUGGCCCCGGAG
hsa_m5C_4699	chr1	939313	939314	+	ENST00000618323	C1609	m5C	C22	5'-GGGAGCUGGGGCCCAGCAUGGCCCCGGAG-3'	.....((((((((......)))))))).. (-16.80)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	29	chr1:939293-939321	SAMD11	HGNC:28706	ENSG00000187634	GGGAGCUGGGGCCCAGCAUGGCCCCGGAG
hsa_m5C_4700	chr1	939314	939315	+	ENST00000618323	C1610	m5C	C23	5'-GGGAGCUGGGGCCCAGCAUGGCCCCGGAG-3'	.....((((((((......)))))))).. (-16.80)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	29	chr1:939293-939321	SAMD11	HGNC:28706	ENSG00000187634	GGGAGCUGGGGCCCAGCAUGGCCCCGGAG
hsa_m5C_4701	chr1	939315	939316	+	ENST00000618323	C1611	m5C	C24	5'-GGGAGCUGGGGCCCAGCAUGGCCCCGGAG-3'	.....((((((((......)))))))).. (-16.80)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;22344696	29	chr1:939293-939321	SAMD11	HGNC:28706	ENSG00000187634	GGGAGCUGGGGCCCAGCAUGGCCCCGGAG
hsa_m5C_4702	chr1	939316	939317	+	ENST00000618323	C1612	m5C	C25	5'-GGGAGCUGGGGCCCAGCAUGGCCCCGGAG-3'	.....((((((((......)))))))).. (-16.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;22344696	29	chr1:939293-939321	SAMD11	HGNC:28706	ENSG00000187634	GGGAGCUGGGGCCCAGCAUGGCCCCGGAG
hsa_m5C_4703	chr22	29311692	29311693	+	ENST00000618518	C2290	m5C	C5	5'-GGCCCCGGGGGGCCCCAGGAGGCAGGG-3'	.((((((((....))).)).))).... (-12.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr22:29311689-29311715	GAS2L1	HGNC:16955	ENSG00000185340	GGCCCCGGGGGGCCCCAGGAGGCAGGG
hsa_m5C_4704	chr7	2432780	2432781	+	ENST00000618655	C282	m5C	C7	5'-GGGCCGCCGCUGCCCACGCCCGGGCCGGACAGGGACAGGG-3'	((((.......))))...(((...((......))...))) (-13.40)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	40	chr7:2432775-2432814	CHST12	HGNC:17423	ENSG00000136213	GGGCCGCCGCUGCCCACGCCCGGGCCGGACAGGGACAGGG
hsa_m5C_4705	chr7	2432799	2432800	+	ENST00000618655	C301	m5C	C26	5'-GGGCCGCCGCUGCCCACGCCCGGGCCGGACAGGGACAGGG-3'	((((.......))))...(((...((......))...))) (-13.40)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	40	chr7:2432775-2432814	CHST12	HGNC:17423	ENSG00000136213	GGGCCGCCGCUGCCCACGCCCGGGCCGGACAGGGACAGGG
hsa_m5C_4706	chr1	27405683	27405684	-	ENST00000618852	C4227	m5C	C8	5'-GGGGGGCCGGGGACCCAGUGAGCCGAGAGGCCCUCUGGG-3'	((((((((..((..........))....))))))))... (-16.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	39	chr1:27405653-27405691	WASF2	HGNC:12733	ENSG00000158195	GGGGGGCCGGGGACCCAGUGAGCCGAGAGGCCCUCUGGG
hsa_m5C_4707	chr8	144055093	144055094	-	ENST00000618853	C2437	m5C	C15	5'-GGCCCGAUGGGGGGCUGG-3'	(((((......))))).. ( -9.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	18	chr8:144055091-144055108	OPLAH	HGNC:8149	ENSG00000178814	GGCCCGAUGGGGGGCUGG
hsa_m5C_4708	chr17	38767909	38767910	-	ENST00000619039	C3164	m5C	C3	5'-GGCCCCAGGAAGGGG-3'	..((((.....)))) ( -5.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038;30872485	15	chr17:38767898-38767912	PIP4K2B	HGNC:8998	ENSG00000276293	GGCCCCAGGAAGGGG
hsa_m5C_4709	chr17	38767908	38767909	-	ENST00000619039	C3165	m5C	C4	5'-GGCCCCAGGAAGGGG-3'	..((((.....)))) ( -5.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038;30872485	15	chr17:38767898-38767912	PIP4K2B	HGNC:8998	ENSG00000276293	GGCCCCAGGAAGGGG
hsa_m5C_4710	chr17	38767907	38767908	-	ENST00000619039	C3166	m5C	C5	5'-GGCCCCAGGAAGGGG-3'	..((((.....)))) ( -5.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038;30872485	15	chr17:38767898-38767912	PIP4K2B	HGNC:8998	ENSG00000276293	GGCCCCAGGAAGGGG
hsa_m5C_4711	chr17	38767906	38767907	-	ENST00000619039	C3167	m5C	C6	5'-GGCCCCAGGAAGGGG-3'	..((((.....)))) ( -5.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038;30872485	15	chr17:38767898-38767912	PIP4K2B	HGNC:8998	ENSG00000276293	GGCCCCAGGAAGGGG
hsa_m5C_4712	chr10	12833004	12833005	+	ENST00000619168	C5548	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr10:12833000-12833014	CAMK1D	HGNC:19341	ENSG00000183049	GGAGGCUGAGGCAGG
hsa_m5C_4713	chr10	12833010	12833011	+	ENST00000619168	C5554	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr10:12833000-12833014	CAMK1D	HGNC:19341	ENSG00000183049	GGAGGCUGAGGCAGG
hsa_m5C_4714	chr20	38926665	38926666	+	ENST00000619304	C355	m5C	C6	5'-GAGGCCGGGAGAGGAGGG-3'	....((......)).... ( -1.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	18	chr20:38926661-38926678	FAM83D	HGNC:16122	ENSG00000101447	GAGGCCGGGAGAGGAGGG
hsa_m5C_4715	chr20	38926567	38926568	+	ENST00000619304	C257	m5C	C10	5'-GGUGGCGGGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	12	chr20:38926559-38926570	FAM83D	HGNC:16122	ENSG00000101447	GGUGGCGGGCGG
hsa_m5C_4716	chr22	18609587	18609588	-	ENST00000619918	C2332	m5C	C7	5'-GGCUGGCGGAGG-3'	NA	loop	mRNA	Testis	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database	NA	12	chr22:18609583-18609594	RIMBP3	HGNC:29344	ENSG00000275793	GGCUGGCGGAGG
hsa_m5C_4717	chr17	45132364	45132365	-	ENST00000619929	C151	m5C	C5	5'-GGAGCCCCCGGUGGCCGCCCAGG-3'	((.(((......)))...))... ( -4.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr17:45132347-45132369	PLCD3	HGNC:9061	ENSG00000161714	GGAGCCCCCGGUGGCCGCCCAGG
hsa_m5C_4718	chr17	45132354	45132355	-	ENST00000619929	C161	m5C	C15	5'-GGAGCCCCCGGUGGCCGCCCAGG-3'	((.(((......)))...))... ( -4.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr17:45132347-45132369	PLCD3	HGNC:9061	ENSG00000161714	GGAGCCCCCGGUGGCCGCCCAGG
hsa_m5C_4719	chr17	45132353	45132354	-	ENST00000619929	C162	m5C	C16	5'-GGAGCCCCCGGUGGCCGCCCAGG-3'	((.(((......)))...))... ( -4.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr17:45132347-45132369	PLCD3	HGNC:9061	ENSG00000161714	GGAGCCCCCGGUGGCCGCCCAGG
hsa_m5C_4720	chr17	45115477	45115478	-	ENST00000619929	C1531	m5C	C5	5'-GGGCCGGGUCCUGGUGAAGG-3'	..(((((...)))))..... ( -4.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr17:45115463-45115482	PLCD3	HGNC:9061	ENSG00000161714	GGGCCGGGUCCUGGUGAAGG
hsa_m5C_4721	chr1	155187527	155187528	-	ENST00000620103	C1202	m5C	C13	5'-GGGCUGGGGUGCCAGGCUGGGG-3'	((.((((....)))).)).... ( -8.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	22	chr1:155187519-155187540	MUC1	HGNC:7508	ENSG00000185499	GGGCUGGGGUGCCAGGCUGGGG
hsa_m5C_4722	chr1	155186034	155186035	-	ENST00000620103	C1600	m5C	C12	5'-GGGCUGGUGAGCUGGGAGUUCAGG-3'	.......((((((...)))))).. ( -4.10)	loop	mRNA	293T;frontal_cortex,liver,lung,Muscle,spleen,Testis,HeLa,T24;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;38168991	28418038;30872485;38168991	24	chr1:155186023-155186046	MUC1	HGNC:7508	ENSG00000185499	GGGCUGGUGAGCUGGGAGUUCAGG
hsa_m5C_4723	chr11	2944756	2944757	-	ENST00000620138	C2153	m5C	C20	5'-GGGCUUCGGCAGUCUUCUCCACUGAGGGACUGGGCUGGG-3'	.((((....((((((.(((....)))))))))))))... (-12.10)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	39	chr11:2944738-2944776	NAP1L4	HGNC:7640	ENSG00000205531	GGGCUUCGGCAGUCUUCUCCACUGAGGGACUGGGCUGGG
hsa_m5C_4724	chr11	118755403	118755404	-	ENST00000620157	C1635	m5C	C8	5'-GGAAGAUCAG^GUCGCUUUGGUCAUCUUGG-3'	(((.(((((((....))))))).)))... ( -6.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr11:118754869-118754887;118755402-118755411	DDX6	HGNC:2747	ENSG00000110367	GGAAGAUCAGGUCGCUUUGGUCAUCUUGG
hsa_m5C_4725	chr11	118751829	118751830	-	ENST00000620157	C2088	m5C	C12	5'-GGGAAAGGGGACAAGGAAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	20	chr11:118751822-118751841	DDX6	HGNC:2747	ENSG00000110367	GGGAAAGGGGACAAGGAAGG
hsa_m5C_4726	chr11	118750211	118750212	-	ENST00000620157	C3706	m5C	C18	5'-GGUCAAUCAGGAGGCAUCUGGAAAGGGGGG-3'	......((.(((....))).))........ ( -1.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	30	chr11:118750200-118750229	DDX6	HGNC:2747	ENSG00000110367	GGUCAAUCAGGAGGCAUCUGGAAAGGGGGG
hsa_m5C_4727	chr16	90043315	90043316	+	ENST00000620723	C1653	m5C	C11	5'-GGGCCAGGGCCCCGCGGGACUGGUGGG-3'	..(((((..(((...))).)))))... (-10.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr16:90043306-90043332	GAS8	HGNC:4166	ENSG00000141013	GGGCCAGGGCCCCGCGGGACUGGUGGG
hsa_m5C_4728	chr16	90043319	90043320	+	ENST00000620723	C1657	m5C	C15	5'-GGGCCAGGGCCCCGCGGGACUGGUGGG-3'	..(((((..(((...))).)))))... (-10.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr16:90043306-90043332	GAS8	HGNC:4166	ENSG00000141013	GGGCCAGGGCCCCGCGGGACUGGUGGG
hsa_m5C_4729	chr22	21385704	21385705	+	ENST00000620804	C1955	m5C	C7	5'-GGCUGGCGGAGG-3'	NA	loop	mRNA	Testis	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database	NA	12	chr22:21385699-21385710	RIMBP3B	HGNC:33891	ENSG00000274600	GGCUGGCGGAGG
hsa_m5C_4730	chr17	31538060	31538061	+	ENST00000621161	C8421	m5C	C32	5'-GGGACCUGCCCUGUGGGCCCCAGGGAGGGGACAGUGGGGG-3'	.....((.((((((...((((.....)))))))).)).)) (-15.00)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	40	chr17:31538030-31538069	RAB11FIP4	HGNC:30267	ENSG00000131242	GGGACCUGCCCUGUGGGCCCCAGGGAGGGGACAGUGGGGG
hsa_m5C_4731	chr17	31533804	31533805	+	ENST00000621161	C4165	m5C	C8	5'-GGGGCGCCAUGGGAACAGGCUCCGGAGGG-3'	..((.(((.((....))))).))...... ( -8.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr17:31533798-31533826	RAB11FIP4	HGNC:30267	ENSG00000131242	GGGGCGCCAUGGGAACAGGCUCCGGAGGG
hsa_m5C_4732	chr8	144517692	144517693	-	ENST00000621189	C153	m5C	C4	5'-GGGCUGCCCAGGGGCCGAGGGGCUGAGGG-3'	......(((...((((....))))..))) ( -9.80)	bulge	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr8:144517668-144517696	RECQL4	HGNC:9949	ENSG00000160957	GGGCUGCCCAGGGGCCGAGGGGCUGAGGG
hsa_m5C_4733	chr1	160997320	160997321	-	ENST00000621309	C2660	m5C	C3	5'-GGCAAGGGGAUUUCUCAGG-3'	......(((....)))... ( -0.90)	loop	mRNA	293T;frontal_cortex,heart,liver,lung,spleen,Testis,HeLa,T24;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;30872485;38168991	19	chr1:160997305-160997323	F11R	HGNC:14685	ENSG00000158769	GGCAAGGGGAUUUCUCAGG
hsa_m5C_4734	chr7	100096070	100096071	-	ENST00000621318	C2019	m5C	C9	5'-GGGUGGGGCCCUGGUGCUGG-3'	((((...))))......... ( -4.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr7:100096060-100096079	MCM7	HGNC:6950	ENSG00000166508	GGGUGGGGCCCUGGUGCUGG
hsa_m5C_4735	chr17	38727572	38727573	+	ENST00000621332	C5617	m5C	C12	5'-GGAGGCUGAGGCGG-3'	....((....)).. ( -0.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	14	chr17:38727562-38727575	MLLT6	HGNC:7138	ENSG00000275023	GGAGGCUGAGGCGG
hsa_m5C_4736	chr17	38716798	38716799	+	ENST00000621332	C1829	m5C	C41	5'-GGGCCAGGCCGUCCCAAGGGCAGCCGGAACAAGGAGGGCACUGGG-3'	...(((((((.(((...((....)).......))).))).)))). (-18.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr17:38716759-38716803	MLLT6	HGNC:7138	ENSG00000275023	GGGCCAGGCCGUCCCAAGGGCAGCCGGAACAAGGAGGGCACUGGG
hsa_m5C_4737	chr20	4177392	4177393	+	ENST00000621355	C476	m5C	C23	5'-GGAGCCACCUGGAUCCAUGGCUCCCAUGG-3'	(((((((..((....)))))))))..... (-11.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr20:4177371-4177399	SMOX	HGNC:15862	ENSG00000088826	GGAGCCACCUGGAUCCAUGGCUCCCAUGG
hsa_m5C_4738	chr20	4177393	4177394	+	ENST00000621355	C477	m5C	C24	5'-GGAGCCACCUGGAUCCAUGGCUCCCAUGG-3'	(((((((..((....)))))))))..... (-11.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr20:4177371-4177399	SMOX	HGNC:15862	ENSG00000088826	GGAGCCACCUGGAUCCAUGGCUCCCAUGG
hsa_m5C_4739	chr5	148206055	148206056	+	ENST00000621437	C255	m5C	C7	5'-GGAGGACAG^GUUGACUGUGG-3'	.....((((.....)))).. ( -3.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	20	chr5:148206050-148206058;148213910-148213920	SPINK6	HGNC:29486	ENSG00000178172	GGAGGACAGGUUGACUGUGG
hsa_m5C_4740	chr14	57268787	57268788	-	ENST00000621441	C118	m5C	C5	5'-GGAUCUGUGGGGAGCUGGGG-3'	....((.(((....))).)) ( -1.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	20	chr14:57268773-57268792	EXOC5	HGNC:10696	ENSG00000070367	GGAUCUGUGGGGAGCUGGGG
hsa_m5C_4741	chr19	58299489	58299490	+	ENST00000621650	C5809	m5C	C3	5'-GGCCAGGCGCGGUGG-3'	.(((......))).. ( -2.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr19:58299488-58299502	ZNF8	HGNC:13154	ENSG00000278129	GGCCAGGCGCGGUGG
hsa_m5C_4742	chr19	58299494	58299495	+	ENST00000621650	C5814	m5C	C8	5'-GGCCAGGCGCGGUGG-3'	.(((......))).. ( -2.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr19:58299488-58299502	ZNF8	HGNC:13154	ENSG00000278129	GGCCAGGCGCGGUGG
hsa_m5C_4743	chr19	58299496	58299497	+	ENST00000621650	C5816	m5C	C10	5'-GGCCAGGCGCGGUGG-3'	.(((......))).. ( -2.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr19:58299488-58299502	ZNF8	HGNC:13154	ENSG00000278129	GGCCAGGCGCGGUGG
hsa_m5C_4744	chr10	72235212	72235213	+	ENST00000621663	C2922	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr10:72235208-72235222	ANAPC16	HGNC:26976	ENSG00000166295	GGAGGCUGAGGCAGG
hsa_m5C_4745	chr10	72235218	72235219	+	ENST00000621663	C2928	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr10:72235208-72235222	ANAPC16	HGNC:26976	ENSG00000166295	GGAGGCUGAGGCAGG
hsa_m5C_4746	chr10	72235319	72235320	+	ENST00000621663	C3029	m5C	C11	5'-GGCGUGGUGGCGG-3'	.((......)).. ( -2.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	13	chr10:72235310-72235322	ANAPC16	HGNC:26976	ENSG00000166295	GGCGUGGUGGCGG
hsa_m5C_4747	chr5	78479806	78479807	+	ENST00000621999	C5211	m5C	C7	5'-GGGAGGCCAAGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr5:78479801-78479815	SCAMP1	HGNC:10563	ENSG00000085365	GGGAGGCCAAGGUGG
hsa_m5C_4748	chr5	78479807	78479808	+	ENST00000621999	C5212	m5C	C8	5'-GGGAGGCCAAGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr5:78479801-78479815	SCAMP1	HGNC:10563	ENSG00000085365	GGGAGGCCAAGGUGG
hsa_m5C_4749	chr4	65643391	65643392	-	ENST00000622150	C970	m5C	C6	5'-GGGACCUGGGAUGGAUUGCUUUUCCAAAAAAUGGG^UGGG-3'	...(((((...((((.......)))).....)))))... ( -7.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	39	chr4:65602301-65602304;65643363-65643397	EPHA5	HGNC:3389	ENSG00000145242	GGGACCUGGGAUGGAUUGCUUUUCCAAAAAAUGGGUGGG
hsa_m5C_4750	chr15	74597582	74597583	+	ENST00000622429	C3697	m5C	C10	5'-GGGUGUGGGCAGAGAAGGGCAUCUGGG-3'	((((((............))))))... ( -4.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	27	chr15:74597574-74597600	ARID3B	HGNC:14350	ENSG00000179361	GGGUGUGGGCAGAGAAGGGCAUCUGGG
hsa_m5C_4751	chr14	88824678	88824679	+	ENST00000622513	C56	m5C	C7	5'-GGAGCGCUGGGCCUUCGCUGGCCGCACCGG-3'	....((.((((((......)))).)).)). (-10.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	30	chr14:88824673-88824702	TTC8	HGNC:20087	ENSG00000165533	GGAGCGCUGGGCCUUCGCUGGCCGCACCGG
hsa_m5C_4752	chr22	50253020	50253021	-	ENST00000622558	C1661	m5C	C23	5'-GGGUGGGCGCAGGGCACCAACUCAGGG-3'	((((((((.....)).)).)))).... ( -8.70)	loop	mRNA	T24;heart,liver,lung,Muscle,T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	27	chr22:50253017-50253043	MAPK12	HGNC:6874	ENSG00000188130	GGGUGGGCGCAGGGCACCAACUCAGGG
hsa_m5C_4753	chr22	45672067	45672068	+	ENST00000623075	C15050	m5C	C11	5'-GGCAAGAUGGCGGCGCCCAGG-3'	(((...........))).... ( -2.40)	loop	lncRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	21	chr22:45672058-45672078	NA	NA	ENSG00000280383	GGCAAGAUGGCGGCGCCCAGG
hsa_m5C_4754	chr22	45672070	45672071	+	ENST00000623075	C15053	m5C	C14	5'-GGCAAGAUGGCGGCGCCCAGG-3'	(((...........))).... ( -2.40)	loop	lncRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	21	chr22:45672058-45672078	NA	NA	ENSG00000280383	GGCAAGAUGGCGGCGCCCAGG
hsa_m5C_4755	chr5	442197	442198	-	ENST00000623673	C963	m5C	C4	5'-GGGCACACAGGAAGGAGAUGGAGCUUGCGG-3'	((((...((.........))..)))).... ( -1.70)	loop	lncRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	30	chr5:442172-442201	EXOC3-AS1	HGNC:25175	ENSG00000221990	GGGCACACAGGAAGGAGAUGGAGCUUGCGG
hsa_m5C_4756	chr19	18869181	18869182	-	ENST00000623882	C1942	m5C	C25	5'-GGGCCAGGGCGCGGGCGCGGACCCCGGG-3'	...((.(((..((....))..))).)). (-10.20)	loop	mRNA	Muscle,Testis;HeLa,rip antibody: ALYREF;Muscle;HeLa,siControl	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	28	chr19:18869179-18869206	CERS1	HGNC:14253	ENSG00000223802	GGGCCAGGGCGCGGGCGCGGACCCCGGG
hsa_m5C_4757	chr1	1014511	1014512	+	ENST00000624697	C759	m5C	C11	5'-GGAUCAAGGGCCGGAAAUAAAGG-3'	((........))........... ( -0.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	23	chr1:1014502-1014524	ISG15	HGNC:4053	ENSG00000187608	GGAUCAAGGGCCGGAAAUAAAGG
hsa_m5C_4758	chr1	1014331	1014332	+	ENST00000624697	C579	m5C	C15	5'-GGCUGGAGGGUGUGCAGG-3'	..(((.........))). ( -1.40)	loop	mRNA	293T;HeLa,siControl;liver,HeLa;HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;38168991;m6A-Atlas database;RMVar database	28418038;31061524;38168991	18	chr1:1014318-1014335	ISG15	HGNC:4053	ENSG00000187608	GGCUGGAGGGUGUGCAGG
hsa_m5C_4759	chr7	128409945	128409946	-	ENST00000626419	C307	m5C	C40	5'-GGGACUCGACCGGGCUGCGCUCACUGCCCAGCCGGGGCCCCGGG-3'	(((......((.(((((.((.....)).))))).))..)))... (-19.50)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	44	chr7:128409942-128409985	IMPDH1	HGNC:6052	ENSG00000106348	GGGACUCGACCGGGCUGCGCUCACUGCCCAGCCGGGGCCCCGGG
hsa_m5C_4760	chr7	128396932	128396933	-	ENST00000626419	C1512	m5C	C16	5'-GGUGAUUGGGGGGAACG^UGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	20	chr7:128396693-128396695;128396932-128396948	IMPDH1	HGNC:6052	ENSG00000106348	GGUGAUUGGGGGGAACGUGG
hsa_m5C_4761	chr19	16646844	16646845	-	ENST00000627144	C1006	m5C	C3	5'-GGCCCGGCCAGGGG-3'	..(((.....))). ( -4.60)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	14	chr19:16646834-16646847	SMIM7	HGNC:28419	ENSG00000214046	GGCCCGGCCAGGGG
hsa_m5C_4762	chr6	143136909	143136910	+	ENST00000629020	C244	m5C	C13	5'-GGAAGUGGGAACCAGGAGCAAGAGAGG-3'	.....(((...)))............. ( -0.30)	loop	mRNA	293T;HeLa	m5C-RIP-seq:(Medium),RNA-BisSeq:(High);UBS-seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	38168991;28418038;22344696	27	chr6:143136898-143136924	AIG1	HGNC:21607	ENSG00000146416	GGAAGUGGGAACCAGGAGCAAGAGAGG
hsa_m5C_4763	chr2	232819955	232819956	+	ENST00000629305	C2763	m5C	C11	5'-GGAAGAAAGGCGGAAGCAGG-3'	.........((....))... ( -1.50)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr2:232819946-232819965	GIGYF2	HGNC:11960	ENSG00000204120	GGAAGAAAGGCGGAAGCAGG
hsa_m5C_4764	chr2	232816904	232816905	+	ENST00000629305	C2506	m5C	C15	5'-GGCAGAAAUGAGGGCAAAACGGGAAGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr2:232816891-232816919	GIGYF2	HGNC:11960	ENSG00000204120	GGCAGAAAUGAGGGCAAAACGGGAAGAGG
hsa_m5C_4765	chr2	232816909	232816910	+	ENST00000629305	C2511	m5C	C20	5'-GGCAGAAAUGAGGGCAAAACGGGAAGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr2:232816891-232816919	GIGYF2	HGNC:11960	ENSG00000204120	GGCAGAAAUGAGGGCAAAACGGGAAGAGG
hsa_m5C_4766	chr6	109448827	109448828	-	ENST00000630715	C1916	m5C	C19	5'-GGUGCCAGGAGCAGACAGCUGGGUACCCGG-3'	((((((...(((.....))).))))))... (-11.40)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr6:109448817-109448846	MICAL1	HGNC:20619	ENSG00000135596	GGUGCCAGGAGCAGACAGCUGGGUACCCGG
hsa_m5C_4767	chr11	33078130	33078131	+	ENST00000631190	C1983	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	lncRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr11:33078126-33078140	NA	NA	ENSG00000280798	GGAGGCUGAGGCAGG
hsa_m5C_4768	chr11	33078136	33078137	+	ENST00000631190	C1989	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	lncRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	15	chr11:33078126-33078140	NA	NA	ENSG00000280798	GGAGGCUGAGGCAGG
hsa_m5C_4769	chr11	33077996	33077997	+	ENST00000631190	C1849	m5C	C6	5'-GGAGGCUGAGGCGG-3'	....((....)).. ( -0.40)	loop	lncRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database	31358969	14	chr11:33077992-33078005	NA	NA	ENSG00000280798	GGAGGCUGAGGCGG
hsa_m5C_4770	chr16	791868	791869	+	ENST00000631357	C1708	m5C	C17	5'-GGCACUGCUCUGUGGGCCCCCGGGGCUGGG-3'	..(((......)))(((((...)))))... ( -9.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr16:791853-791882	CHTF18	HGNC:18435	ENSG00000127586	GGCACUGCUCUGUGGGCCCCCGGGGCUGGG
hsa_m5C_4771	chr16	791869	791870	+	ENST00000631357	C1709	m5C	C18	5'-GGCACUGCUCUGUGGGCCCCCGGGGCUGGG-3'	..(((......)))(((((...)))))... ( -9.40)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038;22344696	30	chr16:791853-791882	CHTF18	HGNC:18435	ENSG00000127586	GGCACUGCUCUGUGGGCCCCCGGGGCUGGG
hsa_m5C_4772	chr16	791870	791871	+	ENST00000631357	C1710	m5C	C19	5'-GGCACUGCUCUGUGGGCCCCCGGGGCUGGG-3'	..(((......)))(((((...)))))... ( -9.40)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038;22344696	30	chr16:791853-791882	CHTF18	HGNC:18435	ENSG00000127586	GGCACUGCUCUGUGGGCCCCCGGGGCUGGG
hsa_m5C_4773	chr16	791871	791872	+	ENST00000631357	C1711	m5C	C20	5'-GGCACUGCUCUGUGGGCCCCCGGGGCUGGG-3'	..(((......)))(((((...)))))... ( -9.40)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038;22344696	30	chr16:791853-791882	CHTF18	HGNC:18435	ENSG00000127586	GGCACUGCUCUGUGGGCCCCCGGGGCUGGG
hsa_m5C_4774	chr16	791877	791878	+	ENST00000631357	C1717	m5C	C26	5'-GGCACUGCUCUGUGGGCCCCCGGGGCUGGG-3'	..(((......)))(((((...)))))... ( -9.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr16:791853-791882	CHTF18	HGNC:18435	ENSG00000127586	GGCACUGCUCUGUGGGCCCCCGGGGCUGGG
hsa_m5C_4775	chr16	790565	790566	+	ENST00000631357	C1379	m5C	C6	5'-GGGGGCCCCUGAGGAGG-3'	(((...)))........ ( -2.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr16:790561-790577	CHTF18	HGNC:18435	ENSG00000127586	GGGGGCCCCUGAGGAGG
hsa_m5C_4776	chr17	34626806	34626807	+	ENST00000631683	C2243	m5C	C23	5'-GGGGGGCUGCGGGGGCUCCCGCCGGGGGGCCGGGCCCGGG-3'	.(((((((.....))))))).(((((........))))). (-23.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	40	chr17:34626785-34626824	TMEM132E	HGNC:26991	ENSG00000181291	GGGGGGCUGCGGGGGCUCCCGCCGGGGGGCCGGGCCCGGG
hsa_m5C_4777	chrX	49079870	49079871	-	ENST00000634944	C203	m5C	C4	5'-GGGCUCCAAGGCCCGGGAGGUCAGAAAACCGGG-3'	(((((....)))))....(((......)))... (-10.10)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	33	chrX:49079842-49079874	WDR45	HGNC:28912	ENSG00000196998	GGGCUCCAAGGCCCGGGAGGUCAGAAAACCGGG
hsa_m5C_4778	chrX	49079861	49079862	-	ENST00000634944	C212	m5C	C13	5'-GGGCUCCAAGGCCCGGGAGGUCAGAAAACCGGG-3'	(((((....)))))....(((......)))... (-10.10)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	30872485	33	chrX:49079842-49079874	WDR45	HGNC:28912	ENSG00000196998	GGGCUCCAAGGCCCGGGAGGUCAGAAAACCGGG
hsa_m5C_4779	chrX	49079844	49079845	-	ENST00000634944	C229	m5C	C30	5'-GGGCUCCAAGGCCCGGGAGGUCAGAAAACCGGG-3'	(((((....)))))....(((......)))... (-10.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	33	chrX:49079842-49079874	WDR45	HGNC:28912	ENSG00000196998	GGGCUCCAAGGCCCGGGAGGUCAGAAAACCGGG
hsa_m5C_4780	chr19	808636	808637	+	ENST00000635647	C1854	m5C	C3	5'-GGCCAGGAGGACCAGG-3'	((((....)).))... ( -3.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr19:808635-808650	PTBP1	HGNC:9583	ENSG00000011304	GGCCAGGAGGACCAGG
hsa_m5C_4781	chr19	811203	811204	+	ENST00000635647	C2568	m5C	C8	5'-GGGGUGUCCUGGGGACCCAAGGGGUGGGG-3'	.((((.((...)).))))........... ( -7.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;RNAfold;rG4-seq2.0:(High)	m6A-Atlas database	28418038	29	chr19:811197-811225	PTBP1	HGNC:9583	ENSG00000011304	GGGGUGUCCUGGGGACCCAAGGGGUGGGG
hsa_m5C_4782	chr19	811212	811213	+	ENST00000635647	C2577	m5C	C17	5'-GGGGUGUCCUGGGGACCCAAGGGGUGGGG-3'	.((((.((...)).))))........... ( -7.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;rG4-seq2.0:(High)	m6A-Atlas database	28418038	29	chr19:811197-811225	PTBP1	HGNC:9583	ENSG00000011304	GGGGUGUCCUGGGGACCCAAGGGGUGGGG
hsa_m5C_4783	chr9	35389876	35389877	+	ENST00000635942	C11401	m5C	C12	5'-GGAACAAGGGCCCAGCAUUCGGAACCUGG-3'	......(((..((.......))..))).. ( -5.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	29	chr9:35389866-35389894	UNC13B	HGNC:12566	ENSG00000198722	GGAACAAGGGCCCAGCAUUCGGAACCUGG
hsa_m5C_4784	chr16	87335363	87335364	-	ENST00000636077	C1027	m5C	C18	5'-GGUACCUAUGGCAGCCACGGCCUGG-3'	.....(((.(((.......)))))) ( -3.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr16:87335357-87335381	FBXO31	HGNC:16510	ENSG00000103264	GGUACCUAUGGCAGCCACGGCCUGG
hsa_m5C_4785	chr16	87335359	87335360	-	ENST00000636077	C1031	m5C	C22	5'-GGUACCUAUGGCAGCCACGGCCUGG-3'	.....(((.(((.......)))))) ( -3.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr16:87335357-87335381	FBXO31	HGNC:16510	ENSG00000103264	GGUACCUAUGGCAGCCACGGCCUGG
hsa_m5C_4786	chr16	87383588	87383589	-	ENST00000636077	C160	m5C	C10	5'-GGUCGGGGGCGG-3'	...((....)). ( -0.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	12	chr16:87383587-87383598	FBXO31	HGNC:16510	ENSG00000103264	GGUCGGGGGCGG
hsa_m5C_4787	chr17	75926288	75926289	-	ENST00000636174	C1011	m5C	C15	5'-GGCAGAUAGGAGACCA^GGAAGG-3'	NA	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr17:75926158-75926163;75926288-75926303	FBF1	HGNC:24674	ENSG00000188878	GGCAGAUAGGAGACCAGGAAGG
hsa_m5C_4788	chr7	76978781	76978782	+	ENST00000636308	C535	m5C	C25	5'-GGGCCAACGUUUUGGGCUUGGGAGCCUGG-3'	.............(((((....))))).. ( -5.80)	bulge	lncRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	29	chr7:76978758-76978786	DTX2P1-UPK3BP1-PMS2P11	HGNC:42360	ENSG00000265479	GGGCCAACGUUUUGGGCUUGGGAGCCUGG
hsa_m5C_4789	chr7	76978782	76978783	+	ENST00000636308	C536	m5C	C26	5'-GGGCCAACGUUUUGGGCUUGGGAGCCUGG-3'	.............(((((....))))).. ( -5.80)	bulge	lncRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	29	chr7:76978758-76978786	DTX2P1-UPK3BP1-PMS2P11	HGNC:42360	ENSG00000265479	GGGCCAACGUUUUGGGCUUGGGAGCCUGG
hsa_m5C_4790	chr1	53213698	53213699	+	ENST00000636891	C2275	m5C	C9	5'-GGCUGAGGCGGGUGG-3'	.(((......))).. ( -0.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr1:53213691-53213705	CPT2	HGNC:2330	ENSG00000157184	GGCUGAGGCGGGUGG
hsa_m5C_4791	chr1	53196815	53196816	+	ENST00000636891	C17	m5C	C16	5'-GGGGCCGGAAGUGGCCUGCGG-3'	.((((((....)))))).... ( -9.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	21	chr1:53196801-53196821	CPT2	HGNC:2330	ENSG00000157184	GGGGCCGGAAGUGGCCUGCGG
hsa_m5C_4792	chr15	89317388	89317389	-	ENST00000636937	C4574	m5C	C17	5'-GGAUGGAAAGGAGAUACGGGAUUCCCCAGG-3'	.................(((....)))... ( -4.00)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr15:89317376-89317405	POLG	HGNC:9179	ENSG00000140521	GGAUGGAAAGGAGAUACGGGAUUCCCCAGG
hsa_m5C_4793	chr12	120216940	120216941	-	ENST00000637617	C1993	m5C	C15	5'-GGCAGAGGAGCCGGCGGAGG-3'	(((......)))........ ( -4.50)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr12:120216936-120216955	PXN	HGNC:9718	ENSG00000089159	GGCAGAGGAGCCGGCGGAGG
hsa_m5C_4794	chr4	2626430	2626431	+	ENST00000637812	C926	m5C	C13	5'-GGCAGAGGCGGACCGG-3'	.((....))....... ( -0.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr4:2626419-2626434	FAM193A	HGNC:16822	ENSG00000125386	GGCAGAGGCGGACCGG
hsa_m5C_4795	chr9	113002068	113002069	-	ENST00000639196	C138	m5C	C13	5'-GGUCUUUG^GAACCCGUGGCAUUGG-3'	.(((..(((...))).)))..... ( -2.50)	loop	lncRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr9:113002058-113002073;113011141-113011148	NA	NA	ENSG00000291094	GGUCUUUGGAACCCGUGGCAUUGG
hsa_m5C_4796	chr3	184344759	184344760	+	ENST00000639617	C1317	m5C	C3	5'-GGCCCACUGGAGGCCCAGG-3'	((((.......)))).... ( -5.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr3:184344758-184344776	FAM131A	HGNC:28308	ENSG00000175182	GGCCCACUGGAGGCCCAGG
hsa_m5C_4797	chr9	113002068	113002069	-	ENST00000639662	C135	m5C	C13	5'-GGUCUUUG^GAACCCGUGGCAUUGG-3'	.(((..(((...))).)))..... ( -2.50)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr9:113002058-113002073;113011141-113011148	ZNF883	HGNC:27271	ENSG00000228623	GGUCUUUGGAACCCGUGGCAUUGG
hsa_m5C_4798	chr2	74415241	74415242	-	ENST00000640868	C1342	m5C	C6	5'-GGACGCGGCUGGGGAUCGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	19	chr2:74415229-74415247	C2orf81	HGNC:34350	ENSG00000284308	GGACGCGGCUGGGGAUCGG
hsa_m5C_4799	chr2	74416082	74416083	-	ENST00000640868	C501	m5C	C16	5'-GGAGGGCGAGGACGUCGUAGG-3'	....((((....))))..... ( -3.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	21	chr2:74416078-74416098	C2orf81	HGNC:34350	ENSG00000284308	GGAGGGCGAGGACGUCGUAGG
hsa_m5C_4800	chr1	41382646	41382647	+	ENST00000641094	C1445	m5C	C15	5'-GGGCCUGGCCGGGGCCCCGCCCCCCAACCAGAGCUGGGUGCCGGG-3'	...((((((.(((((...)))))....(((....)))..)))))) (-18.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr1:41382633-41382677	FOXO6	HGNC:24814	ENSG00000204060	GGGCCUGGCCGGGGCCCCGCCCCCCAACCAGAGCUGGGUGCCGGG
hsa_m5C_4801	chr16	73058795	73058796	-	ENST00000641206	C1513	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMBase database;m6A-Atlas database	28418038	11	chr16:73058788-73058798	ZFHX3	HGNC:777	ENSG00000140836	GGCGGCGGCGG
hsa_m5C_4802	chr16	73058792	73058793	-	ENST00000641206	C1516	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	11	chr16:73058788-73058798	ZFHX3	HGNC:777	ENSG00000140836	GGCGGCGGCGG
hsa_m5C_4803	chr16	73058789	73058790	-	ENST00000641206	C1519	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	11	chr16:73058788-73058798	ZFHX3	HGNC:777	ENSG00000140836	GGCGGCGGCGG
hsa_m5C_4804	chr16	72783282	72783283	-	ENST00000641206	C16821	m5C	C11	5'-GGGAGGGGGGCAAGUUUGGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	20	chr16:72783274-72783293	ZFHX3	HGNC:777	ENSG00000140836	GGGAGGGGGGCAAGUUUGGG
hsa_m5C_4805	chr1	119743894	119743895	+	ENST00000641597	C2290	m5C	C3	5'-GGCAGAGGCAGGCGUGCGG-3'	.......(((....))).. ( -2.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	19	chr1:119743893-119743911	PHGDH	HGNC:8923	ENSG00000092621	GGCAGAGGCAGGCGUGCGG
hsa_m5C_4806	chr3	133661879	133661880	-	ENST00000642236	C501	m5C	C14	5'-GGGGUAGGGGCGGCGCCGAGUCGGGGGAGGGG-3'	..........((((.....))))......... ( -4.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;RNAfold:(High)	m6A-Atlas database	28418038	32	chr3:133661862-133661893	TOPBP1	HGNC:17008	ENSG00000163781	GGGGUAGGGGCGGCGCCGAGUCGGGGGAGGGG
hsa_m5C_4807	chr1	62162712	62162713	+	ENST00000642238	C7419	m5C	C6	5'-GGAGGCCAGGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr1:62162708-62162722	PATJ	HGNC:28881	ENSG00000132849	GGAGGCCAGGGCAGG
hsa_m5C_4808	chr1	62162713	62162714	+	ENST00000642238	C7420	m5C	C7	5'-GGAGGCCAGGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr1:62162708-62162722	PATJ	HGNC:28881	ENSG00000132849	GGAGGCCAGGGCAGG
hsa_m5C_4809	chr1	62162718	62162719	+	ENST00000642238	C7425	m5C	C12	5'-GGAGGCCAGGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	15	chr1:62162708-62162722	PATJ	HGNC:28881	ENSG00000132849	GGAGGCCAGGGCAGG
hsa_m5C_4810	chr19	50257321	50257322	+	ENST00000642316	C2121	m5C	C28	5'-GGGG^UGGAGGGCAUCGUGGGGCUGGAACAGG-3'	..((((.....))))......(((...))). ( -3.30)	bulge	mRNA	heart,Muscle;heart	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31061524	31	chr19:50255315-50255318;50257299-50257325	MYH14	HGNC:23212	ENSG00000105357	GGGGUGGAGGGCAUCGUGGGGCUGGAACAGG
hsa_m5C_4811	chr9	36216453	36216454	-	ENST00000642385	C3250	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr9:36216445-36216459	GNE	HGNC:23657	ENSG00000159921	GGAGGCUGAGGCAGG
hsa_m5C_4812	chr9	36216447	36216448	-	ENST00000642385	C3256	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr9:36216445-36216459	GNE	HGNC:23657	ENSG00000159921	GGAGGCUGAGGCAGG
hsa_m5C_4813	chr9	36216577	36216578	-	ENST00000642385	C3126	m5C	C17	5'-GGGAGGCCGAGAUGGGCGG-3'	.....(((......))).. ( -5.30)	loop	mRNA	T24;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	19	chr9:36216576-36216594	GNE	HGNC:23657	ENSG00000159921	GGGAGGCCGAGAUGGGCGG
hsa_m5C_4814	chr2	148021144	148021145	+	ENST00000642680	C55	m5C	C9	5'-GGCAGUGGCAGAGGGGGGG-3'	.((....)).......... ( -0.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	31358969	19	chr2:148021137-148021155	MBD5	HGNC:20444	ENSG00000204406	GGCAGUGGCAGAGGGGGGG
hsa_m5C_4815	chr7	17345213	17345214	+	ENST00000642825	C6022	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	m6A-Atlas database	22344696	15	chr7:17345209-17345223	AHR	HGNC:348	ENSG00000106546	GGAGGCUGAGGCAGG
hsa_m5C_4816	chr7	17345219	17345220	+	ENST00000642825	C6028	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	m6A-Atlas database	22344696	15	chr7:17345209-17345223	AHR	HGNC:348	ENSG00000106546	GGAGGCUGAGGCAGG
hsa_m5C_4817	chrX	53250418	53250419	-	ENST00000642864	C2384	m5C	C4	5'-GGACAGUCUAAGGGAGCCUCCGGCUACCGG-3'	............((((((...)))).)).. ( -6.90)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chrX:53250393-53250422	IQSEC2	HGNC:29059	ENSG00000124313	GGACAGUCUAAGGGAGCCUCCGGCUACCGG
hsa_m5C_4818	chr5	140697012	140697013	+	ENST00000643996	C1179	m5C	C13	5'-GGCCCUGGAGGGCCUGG-3'	(((((....)))))... ( -9.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr5:140697001-140697017	HARS2	HGNC:4817	ENSG00000112855	GGCCCUGGAGGGCCUGG
hsa_m5C_4819	chr22	23787011	23787012	+	ENST00000644036	C47	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	11	chr22:23787007-23787017	SMARCB1	HGNC:11103	ENSG00000099956	GGCGGCGGCGG
hsa_m5C_4820	chr19	11035027	11035028	+	ENST00000644737	C4238	m5C	C11	5'-GGAGGUGGAGCGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	30526041	13	chr19:11035018-11035030	SMARCA4	HGNC:11100	ENSG00000127616	GGAGGUGGAGCGG
hsa_m5C_4821	chr19	10961066	10961067	+	ENST00000644737	C136	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	11	chr19:10961059-10961069	SMARCA4	HGNC:11100	ENSG00000127616	GGCGGCGGCGG
hsa_m5C_4822	chr19	10961133	10961134	+	ENST00000644737	C203	m5C	C3	5'-GGCGGGGGAGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	11	chr19:10961132-10961142	SMARCA4	HGNC:11100	ENSG00000127616	GGCGGGGGAGG
hsa_m5C_4823	chr19	10985355	10985356	+	ENST00000644737	C577	m5C	C18	5'-GGGAUGCGGUCAGGGGGCCAUGCUGGGAUGGGG-3'	.....((((((....))))..)).......... ( -4.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	33	chr19:10985339-10985371	SMARCA4	HGNC:11100	ENSG00000127616	GGGAUGCGGUCAGGGGGCCAUGCUGGGAUGGGG
hsa_m5C_4824	chr19	11030829	11030830	+	ENST00000644737	C3754	m5C	C14	5'-GGGCUGGGGGGCUCGG-3'	(((((....))))).. ( -6.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr19:11030817-11030832	SMARCA4	HGNC:11100	ENSG00000127616	GGGCUGGGGGGCUCGG
hsa_m5C_4825	chr14	64793345	64793346	-	ENST00000644917	C2484	m5C	C4	5'-GGGCAGGACGAAGGGGCCACGCGGGCCCUGGGG-3'	............((((((.....)))))).... (-11.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	33	chr14:64793317-64793349	SPTB	HGNC:11274	ENSG00000070182	GGGCAGGACGAAGGGGCCACGCGGGCCCUGGGG
hsa_m5C_4826	chr7	140808991	140808992	-	ENST00000644969	C734	m5C	C12	5'-GGACAGUG^GUACCUGCAAGGUGUGG-3'	.........(((((...)))))... ( -2.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr7:140808979-140808995;140834609-140834616	BRAF	HGNC:1097	ENSG00000157764	GGACAGUGGUACCUGCAAGGUGUGG
hsa_m5C_4827	chr7	140808990	140808991	-	ENST00000644969	C735	m5C	C13	5'-GGACAGUG^GUACCUGCAAGGUGUGG-3'	.........(((((...)))))... ( -2.80)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr7:140808979-140808995;140834609-140834616	BRAF	HGNC:1097	ENSG00000157764	GGACAGUGGUACCUGCAAGGUGUGG
hsa_m5C_4828	chr12	6599971	6599972	-	ENST00000645022	C1623	m5C	C9	5'-GGACAAUUCGGAGGGUGAGGAGAUCCUGG-3'	...........(((((......))))).. ( -5.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr12:6599952-6599980	CHD4	HGNC:1919	ENSG00000111642	GGACAAUUCGGAGGGUGAGGAGAUCCUGG
hsa_m5C_4829	chr6	1390448	1390449	+	ENST00000645481	C874	m5C	C7	5'-GGGCGGCCCGGCAAGG-3'	(((...)))....... ( -2.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	16	chr6:1390443-1390458	FOXF2	HGNC:3810	ENSG00000137273	GGGCGGCCCGGCAAGG
hsa_m5C_4830	chr6	1390449	1390450	+	ENST00000645481	C875	m5C	C8	5'-GGGCGGCCCGGCAAGG-3'	(((...)))....... ( -2.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	16	chr6:1390443-1390458	FOXF2	HGNC:3810	ENSG00000137273	GGGCGGCCCGGCAAGG
hsa_m5C_4831	chr6	1390450	1390451	+	ENST00000645481	C876	m5C	C9	5'-GGGCGGCCCGGCAAGG-3'	(((...)))....... ( -2.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	16	chr6:1390443-1390458	FOXF2	HGNC:3810	ENSG00000137273	GGGCGGCCCGGCAAGG
hsa_m5C_4832	chr6	1390852	1390853	+	ENST00000645481	C1278	m5C	C24	5'-GGGGGCGUCGGUGCGGCCGGGGGCGGCGG-3'	....((......)).((((....)))).. ( -8.40)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	29	chr6:1390830-1390858	FOXF2	HGNC:3810	ENSG00000137273	GGGGGCGUCGGUGCGGCCGGGGGCGGCGG
hsa_m5C_4833	chr6	1390855	1390856	+	ENST00000645481	C1281	m5C	C27	5'-GGGGGCGUCGGUGCGGCCGGGGGCGGCGG-3'	....((......)).((((....)))).. ( -8.40)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	29	chr6:1390830-1390858	FOXF2	HGNC:3810	ENSG00000137273	GGGGGCGUCGGUGCGGCCGGGGGCGGCGG
hsa_m5C_4834	chr2	47403396	47403397	+	ENST00000645506	C279	m5C	C6	5'-GGGGCCGGCAG^G-3'	....((....)) ( -0.20)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	12	chr2:47403392-47403402;47408401-47408401	MSH2	HGNC:7325	ENSG00000095002	GGGGCCGGCAGG
hsa_m5C_4835	chr4	128038655	128038656	+	ENST00000645843	C4456	m5C	C8	5'-GGGAGGCCGAGGUGGGGGG-3'	......((......))... ( -1.70)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	19	chr4:128038649-128038667	ABHD18	HGNC:26111	ENSG00000164074	GGGAGGCCGAGGUGGGGGG
hsa_m5C_4836	chr3	36831329	36831330	-	ENST00000645898	C8498	m5C	C11	5'-GGGAGGAGGCCAGGGAGCCCAGGGCUGGG-3'	.......((((..((...))..))))... ( -7.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	29	chr3:36831312-36831340	TRANK1	HGNC:29011	ENSG00000168016	GGGAGGAGGCCAGGGAGCCCAGGGCUGGG
hsa_m5C_4837	chr22	20998316	20998317	+	ENST00000646124	C3567	m5C	C8	5'-GGGAAUCCUGGAGGCCUGGGGUGGG-3'	....(((((((....)))))))... ( -6.60)	loop	mRNA	heart	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	25	chr22:20998310-20998334	LZTR1	HGNC:6742	ENSG00000099949	GGGAAUCCUGGAGGCCUGGGGUGGG
hsa_m5C_4838	chr2	217818192	217818193	-	ENST00000646520	C4428	m5C	C7	5'-GGCACCCUGGGGCUCACCAAGGCAACCUGG-3'	((...(((.((.....)).)))...))... ( -6.80)	loop	mRNA	HeLa,siControl;heart,lung,Muscle;HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	30	chr2:217818170-217818199	TNS1	HGNC:11973	ENSG00000079308	GGCACCCUGGGGCUCACCAAGGCAACCUGG
hsa_m5C_4839	chrX	9693203	9693204	+	ENST00000646640	C2797	m5C	C4	5'-GGACGGAAGAUG^GUAACCUGG-3'	((((........))..))... ( -0.30)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chrX:9693201-9693212;9693322-9693330	TBL1X	HGNC:11585	ENSG00000101849	GGACGGAAGAUGGUAACCUGG
hsa_m5C_4840	chrX	9719252	9719253	+	ENST00000646640	C6591	m5C	C13	5'-GGCCGGACGUUACAGGG-3'	..((..........)). ( -0.50)	bulge	mRNA	293T;HeLa,siControl;lung,Testis,HeLa,T24;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991;m6A-Atlas database;RMVar database	28418038;31061524;38168991	17	chrX:9719241-9719257	TBL1X	HGNC:11585	ENSG00000101849	GGCCGGACGUUACAGGG
hsa_m5C_4841	chr20	36891805	36891806	-	ENST00000646673	C3072	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	15	chr20:36891797-36891811	SAMHD1	HGNC:15925	ENSG00000101347	GGAGGCUGAGGCAGG
hsa_m5C_4842	chr20	36891799	36891800	-	ENST00000646673	C3078	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	15	chr20:36891797-36891811	SAMHD1	HGNC:15925	ENSG00000101347	GGAGGCUGAGGCAGG
hsa_m5C_4843	chrX	103356555	103356556	+	ENST00000646896	C39	m5C	C3	5'-GGCGGUGGUCCCUGAGG-3'	(((....)))....... ( -1.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chrX:103356554-103356570	TCEAL9	HGNC:30084	ENSG00000185222	GGCGGUGGUCCCUGAGG
hsa_m5C_4844	chr19	35769950	35769951	+	ENST00000646935	C3621	m5C	C3	5'-GGCUGGAGGGCAGUGG-3'	.((((.....)))).. ( -3.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr19:35769949-35769964	PROSER3	HGNC:25204	ENSG00000167595	GGCUGGAGGGCAGUGG
hsa_m5C_4845	chr19	16086448	16086449	+	ENST00000646974	C488	m5C	C3	5'-GGCCAUGAAGGAUGAGGAGAAGAUGG-3'	..((((................)))) ( -1.20)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	26	chr19:16086447-16086472	TPM4	HGNC:12013	ENSG00000167460	GGCCAUGAAGGAUGAGGAGAAGAUGG
hsa_m5C_4846	chr11	67609488	67609489	+	ENST00000647561	C1401	m5C	C6	5'-GGGAGCCGGGCACCUGCAAGGACCGGG-3'	.....((((...(((...))).)))). ( -7.60)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	27	chr11:67609484-67609510	NDUFV1	HGNC:7716	ENSG00000167792	GGGAGCCGGGCACCUGCAAGGACCGGG
hsa_m5C_4847	chr3	48918058	48918059	-	ENST00000647812	C765	m5C	C6	5'-GGAGGCCGAGGCGAGUGG-3'	....((....))...... ( -1.50)	loop	lncRNA	SRV-infected and -uninfected Jurkat	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	30009162	18	chr3:48918047-48918064	ARIH2OS	HGNC:34425	ENSG00000221883	GGAGGCCGAGGCGAGUGG
hsa_m5C_4848	chr3	48918057	48918058	-	ENST00000647812	C766	m5C	C7	5'-GGAGGCCGAGGCGAGUGG-3'	....((....))...... ( -1.50)	loop	lncRNA	SRV-infected and -uninfected Jurkat	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	30009162	18	chr3:48918047-48918064	ARIH2OS	HGNC:34425	ENSG00000221883	GGAGGCCGAGGCGAGUGG
hsa_m5C_4849	chr6	131890647	131890648	+	ENST00000647893	C2931	m5C	C26	5'-GGAGCCCUCGGUGAUGCGGACAUCUCAGG-3'	.....(((.((.((((....))))))))) ( -4.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr6:131890623-131890651	ENPP1	HGNC:3356	ENSG00000197594	GGAGCCCUCGGUGAUGCGGACAUCUCAGG
hsa_m5C_4850	chr3	98593452	98593453	-	ENST00000647941	C159	m5C	C5	5'-GGCGCGGGGCGGCUGCGG-3'	..(((((.....))))). ( -7.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	18	chr3:98593440-98593457	CPOX	HGNC:2321	ENSG00000080819	GGCGCGGGGCGGCUGCGG
hsa_m5C_4851	chr3	98593447	98593448	-	ENST00000647941	C164	m5C	C10	5'-GGCGCGGGGCGGCUGCGG-3'	..(((((.....))))). ( -7.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	18	chr3:98593440-98593457	CPOX	HGNC:2321	ENSG00000080819	GGCGCGGGGCGGCUGCGG
hsa_m5C_4852	chr22	50549051	50549052	+	ENST00000648057	C3154	m5C	C8	5'-GGGGGGCCGCUCAGGGCUCCCCAGGG-3'	((((((((......)))))))).... (-18.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	26	chr22:50549045-50549070	KLHDC7B	HGNC:25145	ENSG00000130487	GGGGGGCCGCUCAGGGCUCCCCAGGG
hsa_m5C_4853	chr22	50549060	50549061	+	ENST00000648057	C3163	m5C	C17	5'-GGGGGGCCGCUCAGGGCUCCCCAGGG-3'	((((((((......)))))))).... (-18.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	26	chr22:50549045-50549070	KLHDC7B	HGNC:25145	ENSG00000130487	GGGGGGCCGCUCAGGGCUCCCCAGGG
hsa_m5C_4854	chr22	50549063	50549064	+	ENST00000648057	C3166	m5C	C20	5'-GGGGGGCCGCUCAGGGCUCCCCAGGG-3'	((((((((......)))))))).... (-18.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	26	chr22:50549045-50549070	KLHDC7B	HGNC:25145	ENSG00000130487	GGGGGGCCGCUCAGGGCUCCCCAGGG
hsa_m5C_4855	chr22	50549064	50549065	+	ENST00000648057	C3167	m5C	C21	5'-GGGGGGCCGCUCAGGGCUCCCCAGGG-3'	((((((((......)))))))).... (-18.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	26	chr22:50549045-50549070	KLHDC7B	HGNC:25145	ENSG00000130487	GGGGGGCCGCUCAGGGCUCCCCAGGG
hsa_m5C_4856	chr22	50549065	50549066	+	ENST00000648057	C3168	m5C	C22	5'-GGGGGGCCGCUCAGGGCUCCCCAGGG-3'	((((((((......)))))))).... (-18.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	26	chr22:50549045-50549070	KLHDC7B	HGNC:25145	ENSG00000130487	GGGGGGCCGCUCAGGGCUCCCCAGGG
hsa_m5C_4857	chr11	118401715	118401716	+	ENST00000648261	C110	m5C	C25	5'-GGAGAAGACCCCGGCGCUGGUGAACG^G-3'	..........(((...........))) ( -1.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr11:118401692-118401717;118468775-118468775	NA	NA	ENSG00000285827	GGAGAAGACCCCGGCGCUGGUGAACGG
hsa_m5C_4858	chrX	72572829	72572830	-	ENST00000648298	C14	m5C	C11	5'-GGAGCAGGAACUGGAACCCUGG-3'	....((((.........)))). ( -4.00)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chrX:72572819-72572840	HDAC8	HGNC:13315	ENSG00000147099	GGAGCAGGAACUGGAACCCUGG
hsa_m5C_4859	chr3	11225845	11225846	-	ENST00000648436	C32	m5C	C10	5'-GGUUGUGGUCGGGUGCGG-3'	.........((....)). ( -0.50)	loop	lncRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	18	chr3:11225838-11225855	NA	NA	ENSG00000285906	GGUUGUGGUCGGGUGCGG
hsa_m5C_4860	chr9	121737589	121737590	+	ENST00000648444	C440	m5C	C4	5'-GGGCCGGGCCGGAGGGG-3'	.(((...)))....... ( -2.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr9:121737587-121737603	DAB2IP	HGNC:17294	ENSG00000136848	GGGCCGGGCCGGAGGGG
hsa_m5C_4861	chr9	121772920	121772921	+	ENST00000648444	C2596	m5C	C8	5'-GGGCUGGCCACGGUGCGG-3'	..((((....)))).... ( -3.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	18	chr9:121772914-121772931	DAB2IP	HGNC:17294	ENSG00000136848	GGGCUGGCCACGGUGCGG
hsa_m5C_4862	chr15	85234696	85234697	-	ENST00000648573	C15	m5C	C15	5'-GGUGCGCGGGGUGGCUGGGG-3'	.....((......))..... ( -1.80)	loop	lncRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	20	chr15:85234692-85234711	NA	NA	ENSG00000291210	GGUGCGCGGGGUGGCUGGGG
hsa_m5C_4863	chr11	119107439	119107440	+	ENST00000648610	C97	m5C	C5	5'-GGUCCGGCGGGGCCCGCGCGGUGGGAGGAGUCGG-3'	...(((((....(((((...)))))....))))) (-14.40)	bulge	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	34	chr11:119107436-119107469	C2CD2L	HGNC:29000	ENSG00000172375	GGUCCGGCGGGGCCCGCGCGGUGGGAGGAGUCGG
hsa_m5C_4864	chr17	1465064	1465065	-	ENST00000648651	C4052	m5C	C6	5'-GGAGGCGGAGACGG-3'	.....((....)). ( -0.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	14	chr17:1465057-1465070	MYO1C	HGNC:7597	ENSG00000197879	GGAGGCGGAGACGG
hsa_m5C_4865	chr17	1465058	1465059	-	ENST00000648651	C4058	m5C	C12	5'-GGAGGCGGAGACGG-3'	.....((....)). ( -0.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr17:1465057-1465070	MYO1C	HGNC:7597	ENSG00000197879	GGAGGCGGAGACGG
hsa_m5C_4866	chrX	72572829	72572830	-	ENST00000648922	C14	m5C	C11	5'-GGAGCAGGAACUGGAACCCUGG-3'	....((((.........)))). ( -4.00)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chrX:72572819-72572840	NA	NA	ENSG00000285547	GGAGCAGGAACUGGAACCCUGG
hsa_m5C_4867	chrX	72301920	72301921	-	ENST00000648922	C1642	m5C	C14	5'-GGGACUUUGGGGCCCAGGCGGGAGGGG-3'	(((.((....)))))............ ( -4.60)	loop	mRNA	293T	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31061524	27	chrX:72301908-72301934	NA	NA	ENSG00000285547	GGGACUUUGGGGCCCAGGCGGGAGGGG
hsa_m5C_4868	chr15	40979363	40979364	-	ENST00000648947	C5881	m5C	C4	5'-GGACAGCAGGAGUGAGGUGAAGAGG-3'	..((..((....))..))....... ( -1.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr15:40979343-40979367	INO80	HGNC:26956	ENSG00000128908	GGACAGCAGGAGUGAGGUGAAGAGG
hsa_m5C_4869	chr15	41115993	41115994	-	ENST00000648947	C287	m5C	C3	5'-GGCGGCGGGG-3'	NA	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	10	chr15:41115987-41115996	INO80	HGNC:26956	ENSG00000128908	GGCGGCGGGG
hsa_m5C_4870	chr15	41115990	41115991	-	ENST00000648947	C290	m5C	C6	5'-GGCGGCGGGG-3'	NA	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	10	chr15:41115987-41115996	INO80	HGNC:26956	ENSG00000128908	GGCGGCGGGG
hsa_m5C_4871	chr8	139730626	139730627	-	ENST00000648948	C4190	m5C	C17	5'-GGGCACAGCCUGAGGGCGUGGGCAGCUUCCCACCCUCCCUGGG-3'	((((...)))).((((.(((((......)))))...))))... (-16.70)	loop	mRNA	Muscle,Testis;Muscle	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	43	chr8:139730601-139730643	TRAPPC9	HGNC:30832	ENSG00000167632	GGGCACAGCCUGAGGGCGUGGGCAGCUUCCCACCCUCCCUGGG
hsa_m5C_4872	chr7	4775650	4775651	+	ENST00000649063	C29	m5C	C18	5'-GGAAGUUGACCGGGGUGCGGAGCUCCUGGG-3'	.........((((((.((...)))))))). ( -9.50)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	30	chr7:4775634-4775663	AP5Z1	HGNC:22197	ENSG00000242802	GGAAGUUGACCGGGGUGCGGAGCUCCUGGG
hsa_m5C_4873	chr7	4786255	4786256	+	ENST00000649063	C1232	m5C	C8	5'-G^GGGAAGCGGCUGCAGUGG-3'	......((....))..... ( -0.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr7:4785684-4785684;4786250-4786267	AP5Z1	HGNC:22197	ENSG00000242802	GGGGAAGCGGCUGCAGUGG
hsa_m5C_4874	chr15	88464764	88464765	-	ENST00000649547	C2844	m5C	C3	5'-GGCAGAGUGGCAGCCUGGGG-3'	(((.........)))..... ( -3.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	20	chr15:88464748-88464767	NA	NA	ENSG00000173867	GGCAGAGUGGCAGCCUGGGG
hsa_m5C_4875	chr15	88464753	88464754	-	ENST00000649547	C2855	m5C	C14	5'-GGCAGAGUGGCAGCCUGGGG-3'	(((.........)))..... ( -3.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	20	chr15:88464748-88464767	NA	NA	ENSG00000173867	GGCAGAGUGGCAGCCUGGGG
hsa_m5C_4876	chr15	88464752	88464753	-	ENST00000649547	C2856	m5C	C15	5'-GGCAGAGUGGCAGCCUGGGG-3'	(((.........)))..... ( -3.00)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	20	chr15:88464748-88464767	NA	NA	ENSG00000173867	GGCAGAGUGGCAGCCUGGGG
hsa_m5C_4877	chr7	80135040	80135041	+	ENST00000649796	C211	m5C	C9	5'-GGUGGGGGCGG-3'	NA	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	22344696	11	chr7:80135033-80135043	GNAI1	HGNC:4384	ENSG00000127955	GGUGGGGGCGG
hsa_m5C_4878	chr16	86566972	86566973	+	ENST00000649859	C145	m5C	C5	5'-GGGCCGAGGGUCCACCUGGGUCCCCAGG-3'	(((((.(((.....))).)))))..... (-15.00)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	28	chr16:86566969-86566996	FOXC2	HGNC:3801	ENSG00000176692	GGGCCGAGGGUCCACCUGGGUCCCCAGG
hsa_m5C_4879	chr11	130069981	130069982	+	ENST00000650012	C99	m5C	C13	5'-GGCGAGGGAUGGCGG-3'	.((........)).. ( -1.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	15	chr11:130069970-130069984	APLP2	HGNC:598	ENSG00000084234	GGCGAGGGAUGGCGG
hsa_m5C_4880	chr4	3506490	3506491	-	ENST00000650182	C7567	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr4:3506482-3506496	LRPAP1	HGNC:6701	ENSG00000163956	GGAGGCUGAGGCAGG
hsa_m5C_4881	chr4	3506484	3506485	-	ENST00000650182	C7573	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr4:3506482-3506496	LRPAP1	HGNC:6701	ENSG00000163956	GGAGGCUGAGGCAGG
hsa_m5C_4882	chr4	3524955	3524956	-	ENST00000650182	C310	m5C	C3	5'-GGCUUGGACGAAGAUGGGG-3'	..(((.....)))...... ( -0.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	19	chr4:3524940-3524958	LRPAP1	HGNC:6701	ENSG00000163956	GGCUUGGACGAAGAUGGGG
hsa_m5C_4883	chr4	3524949	3524950	-	ENST00000650182	C316	m5C	C9	5'-GGCUUGGACGAAGAUGGGG-3'	..(((.....)))...... ( -0.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	19	chr4:3524940-3524958	LRPAP1	HGNC:6701	ENSG00000163956	GGCUUGGACGAAGAUGGGG
hsa_m5C_4884	chr15	98948669	98948670	+	ENST00000650285	C4727	m5C	C7	5'-GGAGGGCGGCCUUCUGG-3'	(((((....)))))... ( -6.00)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr15:98948664-98948680	IGF1R	HGNC:5465	ENSG00000140443	GGAGGGCGGCCUUCUGG
hsa_m5C_4885	chr15	98959460	98959461	+	ENST00000650285	C7166	m5C	C14	5'-GGGACCCCGGGAUCCAGGCUGGCCCAGGGCGGCACCCUCAGGG-3'	(((.(((.(((..(((...)))))).))).....)))...... (-12.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	43	chr15:98959448-98959490	IGF1R	HGNC:5465	ENSG00000140443	GGGACCCCGGGAUCCAGGCUGGCCCAGGGCGGCACCCUCAGGG
hsa_m5C_4886	chr15	98959461	98959462	+	ENST00000650285	C7167	m5C	C15	5'-GGGACCCCGGGAUCCAGGCUGGCCCAGGGCGGCACCCUCAGGG-3'	(((.(((.(((..(((...)))))).))).....)))...... (-12.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	43	chr15:98959448-98959490	IGF1R	HGNC:5465	ENSG00000140443	GGGACCCCGGGAUCCAGGCUGGCCCAGGGCGGCACCCUCAGGG
hsa_m5C_4887	chr1	22007508	22007509	+	ENST00000650360	C891	m5C	C3	5'-GGCUGCAAC^GGUGACUCUGGAGG-3'	........(((.....))).... ( -1.00)	loop	lncRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr1:22007507-22007515;22009705-22009718	NA	NA	ENSG00000285959	GGCUGCAACGGUGACUCUGGAGG
hsa_m5C_4888	chr1	22007511	22007512	+	ENST00000650360	C894	m5C	C6	5'-GGCUGCAAC^GGUGACUCUGGAGG-3'	........(((.....))).... ( -1.00)	loop	lncRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr1:22007507-22007515;22009705-22009718	NA	NA	ENSG00000285959	GGCUGCAACGGUGACUCUGGAGG
hsa_m5C_4889	chr1	22007514	22007515	+	ENST00000650360	C897	m5C	C9	5'-GGCUGCAAC^GGUGACUCUGGAGG-3'	........(((.....))).... ( -1.00)	loop	lncRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr1:22007507-22007515;22009705-22009718	NA	NA	ENSG00000285959	GGCUGCAACGGUGACUCUGGAGG
hsa_m5C_4890	chr1	22009709	22009710	+	ENST00000650360	C903	m5C	C15	5'-GGCUGCAAC^GGUGACUCUGGAGG-3'	........(((.....))).... ( -1.00)	loop	lncRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr1:22007507-22007515;22009705-22009718	NA	NA	ENSG00000285959	GGCUGCAACGGUGACUCUGGAGG
hsa_m5C_4891	chr1	22009711	22009712	+	ENST00000650360	C905	m5C	C17	5'-GGCUGCAAC^GGUGACUCUGGAGG-3'	........(((.....))).... ( -1.00)	loop	lncRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	23	chr1:22007507-22007515;22009705-22009718	NA	NA	ENSG00000285959	GGCUGCAACGGUGACUCUGGAGG
hsa_m5C_4892	chr3	45547603	45547604	+	ENST00000650792	C2927	m5C	C19	5'-GGGAUGAGGGGGCGAUGUCUGCUGGCCCAGGGGAAGGG-3'	(((...((.((((...)))).))..))).......... ( -9.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	38	chr3:45547586-45547623	LARS2	HGNC:17095	ENSG00000011376	GGGAUGAGGGGGCGAUGUCUGCUGGCCCAGGGGAAGGG
hsa_m5C_4893	chr3	193241312	193241313	+	ENST00000650797	C186	m5C	C8	5'-GGAGGGGCCGCCGG-3'	....((....)).. ( -1.50)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chr3:193241306-193241319	PLAAT1	HGNC:14922	ENSG00000127252	GGAGGGGCCGCCGG
hsa_m5C_4894	chr6	18155440	18155441	+	ENST00000650836	C20	m5C	C9	5'-GGAAGCGGCGGCGGCGGCGG-3'	....((.((....)).)).. ( -6.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr6:18155433-18155452	KDM1B	HGNC:21577	ENSG00000165097	GGAAGCGGCGGCGGCGGCGG
hsa_m5C_4895	chr17	2711576	2711577	-	ENST00000651024	C188	m5C	C33	5'-GGGAACACGGCUCGCAGGCCGGGGGCAAGGGGCGGCCGGG-3'	.......((((.(((..(((...))).....))))))).. (-15.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	40	chr17:2711570-2711609	CLUH	HGNC:29094	ENSG00000132361	GGGAACACGGCUCGCAGGCCGGGGGCAAGGGGCGGCCGGG
hsa_m5C_4896	chr17	2711573	2711574	-	ENST00000651024	C191	m5C	C36	5'-GGGAACACGGCUCGCAGGCCGGGGGCAAGGGGCGGCCGGG-3'	.......((((.(((..(((...))).....))))))).. (-15.00)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	40	chr17:2711570-2711609	CLUH	HGNC:29094	ENSG00000132361	GGGAACACGGCUCGCAGGCCGGGGGCAAGGGGCGGCCGGG
hsa_m5C_4897	chr17	2711572	2711573	-	ENST00000651024	C192	m5C	C37	5'-GGGAACACGGCUCGCAGGCCGGGGGCAAGGGGCGGCCGGG-3'	.......((((.(((..(((...))).....))))))).. (-15.00)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	40	chr17:2711570-2711609	CLUH	HGNC:29094	ENSG00000132361	GGGAACACGGCUCGCAGGCCGGGGGCAAGGGGCGGCCGGG
hsa_m5C_4898	chr17	2689782	2689783	-	ENST00000651024	C4961	m5C	C26	5'-GGGCCGGGGGCGAGGCUGGGGGAAGCGGGG-3'	..(((...)))...(((......))).... ( -6.10)	loop	mRNA	T24;HeLa,siControl;HeLa	UBS-seq:(High);RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;38168991;m6A-Atlas database;RMVar database	28418038;30872485;38168991	30	chr17:2689779-2689808	CLUH	HGNC:29094	ENSG00000132361	GGGCCGGGGGCGAGGCUGGGGGAAGCGGGG
hsa_m5C_4899	chr15	40419575	40419576	+	ENST00000651168	C2928	m5C	C6	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr15:40419571-40419585	IVD	HGNC:6186	ENSG00000128928	GGAGGCCGAGGCAGG
hsa_m5C_4900	chr15	40419581	40419582	+	ENST00000651168	C2934	m5C	C12	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr15:40419571-40419585	IVD	HGNC:6186	ENSG00000128928	GGAGGCCGAGGCAGG
hsa_m5C_4901	chr15	40419872	40419873	+	ENST00000651168	C3225	m5C	C13	5'-GGGAGGCCGAGGCGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr15:40419861-40419875	IVD	HGNC:6186	ENSG00000128928	GGGAGGCCGAGGCGG
hsa_m5C_4902	chr17	17143652	17143653	+	ENST00000651222	C1879	m5C	C15	5'-GGACAGGAGGUCCACGG-3'	((((.....)))).... ( -5.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	17	chr17:17143639-17143655	MPRIP	HGNC:30321	ENSG00000133030	GGACAGGAGGUCCACGG
hsa_m5C_4903	chr17	17042793	17042794	+	ENST00000651222	C338	m5C	C7	5'-GGAGCGCCAGGCCGGCCAGG-3'	.....(((.....))).... ( -3.60)	loop	mRNA	HeLa	m5C-RIP-seq:(Medium);UBS-seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991	38168991	20	chr17:17042788-17042807	MPRIP	HGNC:30321	ENSG00000133030	GGAGCGCCAGGCCGGCCAGG
hsa_m5C_4904	chr17	17161312	17161313	+	ENST00000651222	C2866	m5C	C7	5'-GGGUGGCCCUGGGCCGGGAGCAGAGCGCCCGUGAGGG-3'	......((((....((((.((...)).))))..)))) (-13.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	37	chr17:17161307-17161343	MPRIP	HGNC:30321	ENSG00000133030	GGGUGGCCCUGGGCCGGGAGCAGAGCGCCCGUGAGGG
hsa_m5C_4905	chr17	17187364	17187365	+	ENST00000651222	C10141	m5C	C9	5'-GGUAUUGCCAGGAAACGGACUGAGG-3'	........(((........)))... ( -2.70)	loop	mRNA	293T;frontal_cortex,lung,Testis,HeLa;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;30872485;38168991	25	chr17:17187357-17187381	MPRIP	HGNC:30321	ENSG00000133030	GGUAUUGCCAGGAAACGGACUGAGG
hsa_m5C_4906	chr1	1043999	1044000	+	ENST00000651234	C2111	m5C	C6	5'-GGAGGCCCGGGCAGG-3'	((....))....... ( -0.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	15	chr1:1043995-1044009	AGRN	HGNC:329	ENSG00000188157	GGAGGCCCGGGCAGG
hsa_m5C_4907	chr1	1044000	1044001	+	ENST00000651234	C2112	m5C	C7	5'-GGAGGCCCGGGCAGG-3'	((....))....... ( -0.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	15	chr1:1043995-1044009	AGRN	HGNC:329	ENSG00000188157	GGAGGCCCGGGCAGG
hsa_m5C_4908	chr1	1044001	1044002	+	ENST00000651234	C2113	m5C	C8	5'-GGAGGCCCGGGCAGG-3'	((....))....... ( -0.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	15	chr1:1043995-1044009	AGRN	HGNC:329	ENSG00000188157	GGAGGCCCGGGCAGG
hsa_m5C_4909	chr1	1040720	1040721	+	ENST00000651234	C703	m5C	C8	5'-GGAGGGGCCGGGCCGGG-3'	.....(((...)))... ( -2.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	17	chr1:1040714-1040730	AGRN	HGNC:329	ENSG00000188157	GGAGGGGCCGGGCCGGG
hsa_m5C_4910	chr11	60201855	60201856	-	ENST00000651255	C879	m5C	C5	5'-GGUGCCCAGGCUGGAGUGCAGUGG-3'	.(((((((...))).))))..... ( -5.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr11:60201837-60201860	MS4A4E	HGNC:14284	ENSG00000214787	GGUGCCCAGGCUGGAGUGCAGUGG
hsa_m5C_4911	chr11	60201854	60201855	-	ENST00000651255	C880	m5C	C6	5'-GGUGCCCAGGCUGGAGUGCAGUGG-3'	.(((((((...))).))))..... ( -5.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr11:60201837-60201860	MS4A4E	HGNC:14284	ENSG00000214787	GGUGCCCAGGCUGGAGUGCAGUGG
hsa_m5C_4912	chr11	60201853	60201854	-	ENST00000651255	C881	m5C	C7	5'-GGUGCCCAGGCUGGAGUGCAGUGG-3'	.(((((((...))).))))..... ( -5.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr11:60201837-60201860	MS4A4E	HGNC:14284	ENSG00000214787	GGUGCCCAGGCUGGAGUGCAGUGG
hsa_m5C_4913	chr11	60201849	60201850	-	ENST00000651255	C885	m5C	C11	5'-GGUGCCCAGGCUGGAGUGCAGUGG-3'	.(((((((...))).))))..... ( -5.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr11:60201837-60201860	MS4A4E	HGNC:14284	ENSG00000214787	GGUGCCCAGGCUGGAGUGCAGUGG
hsa_m5C_4914	chr11	60201841	60201842	-	ENST00000651255	C893	m5C	C19	5'-GGUGCCCAGGCUGGAGUGCAGUGG-3'	.(((((((...))).))))..... ( -5.10)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr11:60201837-60201860	MS4A4E	HGNC:14284	ENSG00000214787	GGUGCCCAGGCUGGAGUGCAGUGG
hsa_m5C_4915	chr7	56068566	56068567	+	ENST00000651354	C241	m5C	C6	5'-GGUGACGGGCCUGUGCGGGAGG-3'	(((.....)))........... ( -2.40)	loop	mRNA	HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	22	chr7:56068562-56068583	SUMF2	HGNC:20415	ENSG00000129103	GGUGACGGGCCUGUGCGGGAGG
hsa_m5C_4916	chr9	34458374	34458375	-	ENST00000651358	C196	m5C	C4	5'-GGUCCGGGGAGG-3'	NA	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	12	chr9:34458367-34458378	FAM219A	HGNC:19920	ENSG00000164970	GGUCCGGGGAGG
hsa_m5C_4917	chr9	34458373	34458374	-	ENST00000651358	C197	m5C	C5	5'-GGUCCGGGGAGG-3'	NA	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	12	chr9:34458367-34458378	FAM219A	HGNC:19920	ENSG00000164970	GGUCCGGGGAGG
hsa_m5C_4918	chrX	48897945	48897946	+	ENST00000651767	C967	m5C	C5	5'-GGCUCGGGGAGUGAAGG-3'	.((((...))))..... ( -1.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	17	chrX:48897942-48897958	PQBP1	HGNC:9330	ENSG00000102103	GGCUCGGGGAGUGAAGG
hsa_m5C_4919	chrX	48902414	48902415	+	ENST00000651767	C1607	m5C	C6	5'-GGGAACGGGAUCGGGACCGCGGG-3'	.....(((........))).... ( -3.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	30526041	23	chrX:48902410-48902432	PQBP1	HGNC:9330	ENSG00000102103	GGGAACGGGAUCGGGACCGCGGG
hsa_m5C_4920	chrX	48902420	48902421	+	ENST00000651767	C1613	m5C	C12	5'-GGGAACGGGAUCGGGACCGCGGG-3'	.....(((........))).... ( -3.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	23	chrX:48902410-48902432	PQBP1	HGNC:9330	ENSG00000102103	GGGAACGGGAUCGGGACCGCGGG
hsa_m5C_4921	chrX	48902425	48902426	+	ENST00000651767	C1618	m5C	C17	5'-GGGAACGGGAUCGGGACCGCGGG-3'	.....(((........))).... ( -3.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	23	chrX:48902410-48902432	PQBP1	HGNC:9330	ENSG00000102103	GGGAACGGGAUCGGGACCGCGGG
hsa_m5C_4922	chrX	48902426	48902427	+	ENST00000651767	C1619	m5C	C18	5'-GGGAACGGGAUCGGGACCGCGGG-3'	.....(((........))).... ( -3.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	23	chrX:48902410-48902432	PQBP1	HGNC:9330	ENSG00000102103	GGGAACGGGAUCGGGACCGCGGG
hsa_m5C_4923	chr11	66851187	66851188	-	ENST00000651854	C3326	m5C	C6	5'-GGAGGCGGCAGG-3'	NA	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;38168991;m6A-Atlas database;RMVar database	31358969;28418038;38168991	12	chr11:66851182-66851193	PC	HGNC:8636	ENSG00000173599	GGAGGCGGCAGG
hsa_m5C_4924	chr11	66851074	66851075	-	ENST00000651854	C3439	m5C	C16	5'-GGCUUGGCCGAAGAGCUGGUGCGAGCUGG-3'	((((((((((......)))).)))))).. (-10.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr11:66851062-66851090	PC	HGNC:8636	ENSG00000173599	GGCUUGGCCGAAGAGCUGGUGCGAGCUGG
hsa_m5C_4925	chr9	128177754	128177755	-	ENST00000651955	C1554	m5C	C11	5'-GG^GUAUGGGGCGCCGGGGG-3'	((((.....)).))..... ( -1.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	19	chr9:128177747-128177763;128178369-128178370	CIZ1	HGNC:16744	ENSG00000148337	GGGUAUGGGGCGCCGGGGG
hsa_m5C_4926	chr9	128177751	128177752	-	ENST00000651955	C1557	m5C	C14	5'-GG^GUAUGGGGCGCCGGGGG-3'	((((.....)).))..... ( -1.90)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	19	chr9:128177747-128177763;128178369-128178370	CIZ1	HGNC:16744	ENSG00000148337	GGGUAUGGGGCGCCGGGGG
hsa_m5C_4927	chr19	10553262	10553263	-	ENST00000652042	C2827	m5C	C4	5'-GGGCCCCGCUGGUGGGAGACAGGUGUAUGGGCUCUGUGGG-3'	((((((((((.((.....)).))))...))))))...... (-14.40)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	40	chr19:10553227-10553266	KRI1	HGNC:25769	ENSG00000129347	GGGCCCCGCUGGUGGGAGACAGGUGUAUGGGCUCUGUGGG
hsa_m5C_4928	chr19	10553261	10553262	-	ENST00000652042	C2828	m5C	C5	5'-GGGCCCCGCUGGUGGGAGACAGGUGUAUGGGCUCUGUGGG-3'	((((((((((.((.....)).))))...))))))...... (-14.40)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	40	chr19:10553227-10553266	KRI1	HGNC:25769	ENSG00000129347	GGGCCCCGCUGGUGGGAGACAGGUGUAUGGGCUCUGUGGG
hsa_m5C_4929	chr19	10553260	10553261	-	ENST00000652042	C2829	m5C	C6	5'-GGGCCCCGCUGGUGGGAGACAGGUGUAUGGGCUCUGUGGG-3'	((((((((((.((.....)).))))...))))))...... (-14.40)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	40	chr19:10553227-10553266	KRI1	HGNC:25769	ENSG00000129347	GGGCCCCGCUGGUGGGAGACAGGUGUAUGGGCUCUGUGGG
hsa_m5C_4930	chr19	10553259	10553260	-	ENST00000652042	C2830	m5C	C7	5'-GGGCCCCGCUGGUGGGAGACAGGUGUAUGGGCUCUGUGGG-3'	((((((((((.((.....)).))))...))))))...... (-14.40)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	40	chr19:10553227-10553266	KRI1	HGNC:25769	ENSG00000129347	GGGCCCCGCUGGUGGGAGACAGGUGUAUGGGCUCUGUGGG
hsa_m5C_4931	chr19	45681888	45681889	+	ENST00000652180	C1609	m5C	C11	5'-GGGACCCUCCCAGGGCCUGGGAAUGAGGCCAGCCGGG-3'	((((...))))..(((((.......)))))....... (-13.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	37	chr19:45681879-45681915	GIPR	HGNC:4271	ENSG00000010310	GGGACCCUCCCAGGGCCUGGGAAUGAGGCCAGCCGGG
hsa_m5C_4932	chr4	185339454	185339455	+	ENST00000652585	C2220	m5C	C9	5'-GGCAAGAACGGAUUGGUGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	19	chr4:185339447-185339465	SNX25	HGNC:21883	ENSG00000109762	GGCAAGAACGGAUUGGUGG
hsa_m5C_4933	chr10	100373598	100373599	+	ENST00000654233	C79	m5C	C8	5'-GGGGAGUCGGCCUCGG-3'	((((......)))).. ( -4.50)	loop	lncRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	16	chr10:100373592-100373607	OLMALINC	HGNC:28060	ENSG00000235823	GGGGAGUCGGCCUCGG
hsa_m5C_4934	chr9	135462894	135462895	-	ENST00000655118	C2894	m5C	C21	5'-GGGAAUGGGAAGGUGAGGGGCCUGGG-3'	..........((((.....))))... ( -3.90)	loop	lncRNA	lung	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;RNAfold:(High)	RMBase database;m6A-Atlas database	31061524	26	chr9:135462890-135462915	PPP1R26-AS1	HGNC:48717	ENSG00000225361	GGGAAUGGGAAGGUGAGGGGCCUGGG
hsa_m5C_4935	chr9	135462893	135462894	-	ENST00000655118	C2895	m5C	C22	5'-GGGAAUGGGAAGGUGAGGGGCCUGGG-3'	..........((((.....))))... ( -3.90)	loop	lncRNA	lung	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31061524	26	chr9:135462890-135462915	PPP1R26-AS1	HGNC:48717	ENSG00000225361	GGGAAUGGGAAGGUGAGGGGCCUGGG
hsa_m5C_4936	chr14	49862803	49862804	-	ENST00000655317	C61	m5C	C7	5'-GGGAGGCUGAGGUGGG-3'	NA	loop	lncRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr14:49862795-49862810	NA	NA	ENSG00000282885	GGGAGGCUGAGGUGGG
hsa_m5C_4937	chr3	45689066	45689067	-	ENST00000658801	C113	m5C	C6	5'-GGGGCCAGUGGCGCAAUGG-3'	...(((...)))....... ( -2.90)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	19	chr3:45689054-45689072	LIMD1-AS1	HGNC:44107	ENSG00000230530	GGGGCCAGUGGCGCAAUGG
hsa_m5C_4938	chr3	45689060	45689061	-	ENST00000658801	C119	m5C	C12	5'-GGGGCCAGUGGCGCAAUGG-3'	...(((...)))....... ( -2.90)	loop	lncRNA	HeLa	Aza-IP:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	23604283	19	chr3:45689054-45689072	LIMD1-AS1	HGNC:44107	ENSG00000230530	GGGGCCAGUGGCGCAAUGG
hsa_m5C_4939	chr5	42992757	42992758	-	ENST00000659142	C583	m5C	C12	5'-GGGUUCUGCGGCGGCGCUGGG-3'	....((.(((....))).)). ( -4.00)	loop	lncRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	21	chr5:42992749-42992769	NA	NA	ENSG00000287263	GGGUUCUGCGGCGGCGCUGGG
hsa_m5C_4940	chr5	42992752	42992753	-	ENST00000659142	C588	m5C	C17	5'-GGGUUCUGCGGCGGCGCUGGG-3'	....((.(((....))).)). ( -4.00)	loop	lncRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	21	chr5:42992749-42992769	NA	NA	ENSG00000287263	GGGUUCUGCGGCGGCGCUGGG
hsa_m5C_4941	chr8	102864418	102864419	+	ENST00000659614	C149	m5C	C4	5'-GGGCGGCCGCGCGGGUGUGGGCCGAGAGAGGG-3'	...(((((.(((....))))))))........ (-13.00)	loop	lncRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	32	chr8:102864416-102864447	MAILR	HGNC:51558	ENSG00000253320	GGGCGGCCGCGCGGGUGUGGGCCGAGAGAGGG
hsa_m5C_4942	chr8	66113433	66113434	+	ENST00000660814	C191	m5C	C4	5'-GGUCGCUGGUUCGAUUCCGGCUCGAAGG-3'	....(((((.......)))))....... ( -7.20)	loop	lncRNA	cytosolic;HeLa	Aza-IP:(High);Modomics:(Low)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	23604283;29106616	28	chr8:66113431-66113458	NA	NA	ENSG00000253190	GGUCGCUGGUUCGAUUCCGGCUCGAAGG
hsa_m5C_4943	chr8	66113435	66113436	+	ENST00000660814	C193	m5C	C6	5'-GGUCGCUGGUUCGAUUCCGGCUCGAAGG-3'	....(((((.......)))))....... ( -7.20)	loop	lncRNA	HeLa	Aza-IP:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	23604283	28	chr8:66113431-66113458	NA	NA	ENSG00000253190	GGUCGCUGGUUCGAUUCCGGCUCGAAGG
hsa_m5C_4944	chr8	66113441	66113442	+	ENST00000660814	C199	m5C	C12	5'-GGUCGCUGGUUCGAUUCCGGCUCGAAGG-3'	....(((((.......)))))....... ( -7.20)	loop	lncRNA	HeLa	Aza-IP:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	23604283	28	chr8:66113431-66113458	NA	NA	ENSG00000253190	GGUCGCUGGUUCGAUUCCGGCUCGAAGG
hsa_m5C_4945	chr8	66113446	66113447	+	ENST00000660814	C204	m5C	C17	5'-GGUCGCUGGUUCGAUUCCGGCUCGAAGG-3'	....(((((.......)))))....... ( -7.20)	loop	lncRNA	HeLa	Aza-IP:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	23604283	28	chr8:66113431-66113458	NA	NA	ENSG00000253190	GGUCGCUGGUUCGAUUCCGGCUCGAAGG
hsa_m5C_4946	chr8	66113447	66113448	+	ENST00000660814	C205	m5C	C18	5'-GGUCGCUGGUUCGAUUCCGGCUCGAAGG-3'	....(((((.......)))))....... ( -7.20)	loop	lncRNA	HeLa	Aza-IP:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	23604283	28	chr8:66113431-66113458	NA	NA	ENSG00000253190	GGUCGCUGGUUCGAUUCCGGCUCGAAGG
hsa_m5C_4947	chr8	66113450	66113451	+	ENST00000660814	C208	m5C	C21	5'-GGUCGCUGGUUCGAUUCCGGCUCGAAGG-3'	....(((((.......)))))....... ( -7.20)	loop	lncRNA	HeLa	Aza-IP:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	23604283	28	chr8:66113431-66113458	NA	NA	ENSG00000253190	GGUCGCUGGUUCGAUUCCGGCUCGAAGG
hsa_m5C_4948	chr8	66113452	66113453	+	ENST00000660814	C210	m5C	C23	5'-GGUCGCUGGUUCGAUUCCGGCUCGAAGG-3'	....(((((.......)))))....... ( -7.20)	loop	lncRNA	HeLa	Aza-IP:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	23604283	28	chr8:66113431-66113458	NA	NA	ENSG00000253190	GGUCGCUGGUUCGAUUCCGGCUCGAAGG
hsa_m5C_4949	chr2	127184529	127184530	-	ENST00000664447	C4384	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr2:127184521-127184535	CYP27C1	HGNC:33480	ENSG00000186684	GGAGGCUGAGGCAGG
hsa_m5C_4950	chr2	127184523	127184524	-	ENST00000664447	C4390	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr2:127184521-127184535	CYP27C1	HGNC:33480	ENSG00000186684	GGAGGCUGAGGCAGG
hsa_m5C_4951	chr3	123585797	123585798	+	ENST00000665710	C180	m5C	C5	5'-GGUGCGGGGUAAGG-3'	NA	loop	lncRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr3:123585794-123585807	MYLK-AS1	HGNC:42440	ENSG00000239523	GGUGCGGGGUAAGG
hsa_m5C_4952	chr17	82101570	82101571	-	ENST00000665763	C3440	m5C	C34	5'-GGGGGGGUGUGGGCACAGCGUGCAGGGUGGAGGCAGGG-3'	.......((((.((...)).)))).............. ( -4.00)	bulge	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	38	chr17:82101567-82101604	CCDC57	HGNC:27564	ENSG00000176155	GGGGGGGUGUGGGCACAGCGUGCAGGGUGGAGGCAGGG
hsa_m5C_4953	chr1	119182355	119182356	+	ENST00000670000	C4270	m5C	C13	5'-GGAGGCAGGGAUCAGAGG-3'	NA	loop	lncRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	18	chr1:119182344-119182361	WARS2-AS1	HGNC:40612	ENSG00000231365	GGAGGCAGGGAUCAGAGG
hsa_m5C_4954	chr16	87492320	87492321	-	ENST00000671377	C704	m5C	C11	5'-GGUCCCGGCGCGCCCCGGCCGCGG-3'	...((((((........)))).)) ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr16:87492308-87492331	ZCCHC14	HGNC:24134	ENSG00000140948	GGUCCCGGCGCGCCCCGGCCGCGG
hsa_m5C_4955	chr16	87492318	87492319	-	ENST00000671377	C706	m5C	C13	5'-GGUCCCGGCGCGCCCCGGCCGCGG-3'	...((((((........)))).)) ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr16:87492308-87492331	ZCCHC14	HGNC:24134	ENSG00000140948	GGUCCCGGCGCGCCCCGGCCGCGG
hsa_m5C_4956	chr16	87492311	87492312	-	ENST00000671377	C713	m5C	C20	5'-GGUCCCGGCGCGCCCCGGCCGCGG-3'	...((((((........)))).)) ( -8.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	24	chr16:87492308-87492331	ZCCHC14	HGNC:24134	ENSG00000140948	GGUCCCGGCGCGCCCCGGCCGCGG
hsa_m5C_4957	chr12	56731511	56731512	-	ENST00000672280	C1659	m5C	C6	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	15	chr12:56731503-56731517	PRIM1	HGNC:9369	ENSG00000198056	GGAGGCCGAGGCAGG
hsa_m5C_4958	chr12	56731510	56731511	-	ENST00000672280	C1660	m5C	C7	5'-GGAGGCCGAGGCAGG-3'	....((....))... ( -1.30)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	15	chr12:56731503-56731517	PRIM1	HGNC:9369	ENSG00000198056	GGAGGCCGAGGCAGG
hsa_m5C_4959	chr19	46988007	46988008	+	ENST00000672722	C4247	m5C	C10	5'-GGAAGGCAUCUACCGGGUCAGCGG-3'	............(((......))) ( -3.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	24	chr19:46987999-46988022	ARHGAP35	HGNC:4591	ENSG00000160007	GGAAGGCAUCUACCGGGUCAGCGG
hsa_m5C_4960	chr19	46988010	46988011	+	ENST00000672722	C4250	m5C	C13	5'-GGAAGGCAUCUACCGGGUCAGCGG-3'	............(((......))) ( -3.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	24	chr19:46987999-46988022	ARHGAP35	HGNC:4591	ENSG00000160007	GGAAGGCAUCUACCGGGUCAGCGG
hsa_m5C_4961	chr19	46988016	46988017	+	ENST00000672722	C4256	m5C	C19	5'-GGAAGGCAUCUACCGGGUCAGCGG-3'	............(((......))) ( -3.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	24	chr19:46987999-46988022	ARHGAP35	HGNC:4591	ENSG00000160007	GGAAGGCAUCUACCGGGUCAGCGG
hsa_m5C_4962	chr19	46919101	46919102	+	ENST00000672722	C828	m5C	C11	5'-GGGGCUGGAGCAGG-3'	...((....))... ( -0.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	14	chr19:46919092-46919105	ARHGAP35	HGNC:4591	ENSG00000160007	GGGGCUGGAGCAGG
hsa_m5C_4963	chr22	29603830	29603831	+	ENST00000672896	C199	m5C	C4	5'-GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG-3'	...(((.((((((......)))))).))). (-16.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	30	chr22:29603828-29603857	NF2	HGNC:7773	ENSG00000186575	GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG
hsa_m5C_4964	chr22	29603831	29603832	+	ENST00000672896	C200	m5C	C5	5'-GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG-3'	...(((.((((((......)))))).))). (-16.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	30	chr22:29603828-29603857	NF2	HGNC:7773	ENSG00000186575	GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG
hsa_m5C_4965	chr22	29603833	29603834	+	ENST00000672896	C202	m5C	C7	5'-GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG-3'	...(((.((((((......)))))).))). (-16.90)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	30	chr22:29603828-29603857	NF2	HGNC:7773	ENSG00000186575	GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG
hsa_m5C_4966	chr22	29603835	29603836	+	ENST00000672896	C204	m5C	C9	5'-GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG-3'	...(((.((((((......)))))).))). (-16.90)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	30	chr22:29603828-29603857	NF2	HGNC:7773	ENSG00000186575	GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG
hsa_m5C_4967	chr22	29603838	29603839	+	ENST00000672896	C207	m5C	C12	5'-GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG-3'	...(((.((((((......)))))).))). (-16.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	30	chr22:29603828-29603857	NF2	HGNC:7773	ENSG00000186575	GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG
hsa_m5C_4968	chr22	29603839	29603840	+	ENST00000672896	C208	m5C	C13	5'-GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG-3'	...(((.((((((......)))))).))). (-16.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	30	chr22:29603828-29603857	NF2	HGNC:7773	ENSG00000186575	GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG
hsa_m5C_4969	chr22	29603848	29603849	+	ENST00000672896	C217	m5C	C22	5'-GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG-3'	...(((.((((((......)))))).))). (-16.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	30	chr22:29603828-29603857	NF2	HGNC:7773	ENSG00000186575	GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG
hsa_m5C_4970	chr22	29603849	29603850	+	ENST00000672896	C218	m5C	C23	5'-GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG-3'	...(((.((((((......)))))).))). (-16.90)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	30	chr22:29603828-29603857	NF2	HGNC:7773	ENSG00000186575	GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG
hsa_m5C_4971	chr22	29603851	29603852	+	ENST00000672896	C220	m5C	C25	5'-GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG-3'	...(((.((((((......)))))).))). (-16.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	30	chr22:29603828-29603857	NF2	HGNC:7773	ENSG00000186575	GGUCCUCGCGGCCCAUGCUGGCCGCUGGGG
hsa_m5C_4972	chr19	15425466	15425467	-	ENST00000673675	C4887	m5C	C7	5'-GGCUGGCCGGCCAGG-3'	((((....))))... ( -5.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr19:15425459-15425473	WIZ	HGNC:30917	ENSG00000011451	GGCUGGCCGGCCAGG
hsa_m5C_4973	chr19	15425465	15425466	-	ENST00000673675	C4888	m5C	C8	5'-GGCUGGCCGGCCAGG-3'	((((....))))... ( -5.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	15	chr19:15425459-15425473	WIZ	HGNC:30917	ENSG00000011451	GGCUGGCCGGCCAGG
hsa_m5C_4974	chr10	102120151	102120152	-	ENST00000673968	C217	m5C	C8	5'-GGGCGGGCACCGUGACUCGGCUGGG-3'	((.((((((...)).)))).))... ( -6.40)	loop	mRNA	spleen	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	25	chr10:102120135-102120159	LDB1	HGNC:6532	ENSG00000198728	GGGCGGGCACCGUGACUCGGCUGGG
hsa_m5C_4975	chrX	18634891	18634892	+	ENST00000674046	C9391	m5C	C15	5'-GGUGUCUGGGAAGACACAGGGCAGGG-3'	.((((((....))))))......... ( -8.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	26	chrX:18634878-18634903	CDKL5	HGNC:11411	ENSG00000008086	GGUGUCUGGGAAGACACAGGGCAGGG
hsa_m5C_4976	chr15	56243570	56243571	-	ENST00000674082	C446	m5C	C18	5'-GGGAGGAGGCGGCGGCGCCAGCGGGGGGCUGAGGGG-3'	.......((((....))))(((.....)))...... ( -9.70)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database	28418038	36	chr15:56243553-56243588	RFX7	HGNC:25777	ENSG00000181827	GGGAGGAGGCGGCGGCGCCAGCGGGGGGCUGAGGGG
hsa_m5C_4977	chr9	75890713	75890714	+	ENST00000674117	C42	m5C	C15	5'-GGAGCCGGAGGGAGCGCUGG-3'	....((((........)))) ( -2.80)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr9:75890700-75890719	PCSK5	HGNC:8747	ENSG00000099139	GGAGCCGGAGGGAGCGCUGG
hsa_m5C_4978	chr9	75891318	75891319	+	ENST00000674117	C647	m5C	C5	5'-GGGGCUUCCCGGAGG-3'	(((....)))..... ( -4.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr9:75891315-75891329	PCSK5	HGNC:8747	ENSG00000099139	GGGGCUUCCCGGAGG
hsa_m5C_4979	chr14	103590637	103590638	+	ENST00000674165	C973	m5C	C13	5'-GGGAGGCCGAGGCGGGUGG-3'	.....(((......))).. ( -3.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	19	chr14:103590626-103590644	COA8	HGNC:20492	ENSG00000256053	GGGAGGCCGAGGCGGGUGG
hsa_m5C_4980	chr1	67396896	67396897	+	ENST00000674203	C3616	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	15	chr1:67396892-67396906	IL12RB2	HGNC:5972	ENSG00000081985	GGAGGCUGAGGCAGG
hsa_m5C_4981	chr1	3813497	3813498	-	ENST00000674623	C5147	m5C	C7	5'-GGGAGGCCGAGGCGGGCGG-3'	.....(((......))).. ( -5.30)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	19	chr1:3813486-3813504	CEP104	HGNC:24866	ENSG00000116198	GGGAGGCCGAGGCGGGCGG
hsa_m5C_4982	chr1	3813496	3813497	-	ENST00000674623	C5148	m5C	C8	5'-GGGAGGCCGAGGCGGGCGG-3'	.....(((......))).. ( -5.30)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	19	chr1:3813486-3813504	CEP104	HGNC:24866	ENSG00000116198	GGGAGGCCGAGGCGGGCGG
hsa_m5C_4983	chr1	3813491	3813492	-	ENST00000674623	C5153	m5C	C13	5'-GGGAGGCCGAGGCGGGCGG-3'	.....(((......))).. ( -5.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	19	chr1:3813486-3813504	CEP104	HGNC:24866	ENSG00000116198	GGGAGGCCGAGGCGGGCGG
hsa_m5C_4984	chr1	3813487	3813488	-	ENST00000674623	C5157	m5C	C17	5'-GGGAGGCCGAGGCGGGCGG-3'	.....(((......))).. ( -5.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	19	chr1:3813486-3813504	CEP104	HGNC:24866	ENSG00000116198	GGGAGGCCGAGGCGGGCGG
hsa_m5C_4985	chr1	232441769	232441770	-	ENST00000674749	C4364	m5C	C7	5'-GGCACCCGG^AAACCAAAUGGCAUGG-3'	.....(((....((....))..))) ( -1.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr1:232441379-232441394;232441768-232441776	SIPA1L2	HGNC:23800	ENSG00000116991	GGCACCCGGAAACCAAAUGGCAUGG
hsa_m5C_4986	chr18	11149197	11149198	-	ENST00000674853	C372	m5C	C6	5'-GGGAUCCGCCGCGGGCCGCCUGGGGGCUGGAGGG-3'	....((((((.((((...))))..))).)))... (-11.60)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	34	chr18:11149170-11149203	PIEZO2	HGNC:26270	ENSG00000154864	GGGAUCCGCCGCGGGCCGCCUGGGGGCUGGAGGG
hsa_m5C_4987	chr16	15725767	15725768	+	ENST00000674995	C2364	m5C	C3	5'-GGCAAGGCAGGGUAAAUGG-3'	NA	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	19	chr16:15725766-15725784	NDE1	HGNC:17619	ENSG00000072864	GGCAAGGCAGGGUAAAUGG
hsa_m5C_4988	chr16	15725396	15725397	+	ENST00000674995	C1993	m5C	C18	5'-GGCUGGAGAAGGGAGACCAGG-3'	..((((..........)))). ( -3.50)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr16:15725380-15725400	NDE1	HGNC:17619	ENSG00000072864	GGCUGGAGAAGGGAGACCAGG
hsa_m5C_4989	chr14	104714460	104714461	+	ENST00000675207	C3539	m5C	C9	5'-GGAGGGGGCCUGGCCGG-3'	......(((...))).. ( -2.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	17	chr14:104714453-104714469	INF2	HGNC:23791	ENSG00000203485	GGAGGGGGCCUGGCCGG
hsa_m5C_4990	chr14	104718879	104718880	+	ENST00000675207	C4077	m5C	C3	5'-GGCCAGGCUGGGACUGG-3'	..((((.......)))) ( -4.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	17	chr14:104718878-104718894	INF2	HGNC:23791	ENSG00000203485	GGCCAGGCUGGGACUGG
hsa_m5C_4991	chr14	104718880	104718881	+	ENST00000675207	C4078	m5C	C4	5'-GGCCAGGCUGGGACUGG-3'	..((((.......)))) ( -4.20)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	17	chr14:104718878-104718894	INF2	HGNC:23791	ENSG00000203485	GGCCAGGCUGGGACUGG
hsa_m5C_4992	chr5	140677045	140677046	-	ENST00000675366	C1005	m5C	C13	5'-GGCCUUGGAGGGCCUGG-3'	(((((....)))))... ( -7.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	17	chr5:140677042-140677058	HARS1	HGNC:4816	ENSG00000170445	GGCCUUGGAGGGCCUGG
hsa_m5C_4993	chr12	88062703	88062704	-	ENST00000675476	C7433	m5C	C11	5'-GGAAACUUGGCCAUGUUAGAGGG^UCUGG-3'	.....((.((((.........)))).)) ( -3.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	28	chr12:88060990-88060994;88062692-88062714	CEP290	HGNC:29021	ENSG00000198707	GGAAACUUGGCCAUGUUAGAGGGUCUGG
hsa_m5C_4994	chr16	70262502	70262503	-	ENST00000675643	C1637	m5C	C6	5'-GGCUACGGUGAUGGCUCUGCGCAGG-3'	(((((......)))))......... ( -2.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chr16:70262484-70262508	AARS1	HGNC:20	ENSG00000090861	GGCUACGGUGAUGGCUCUGCGCAGG
hsa_m5C_4995	chr16	70262491	70262492	-	ENST00000675643	C1648	m5C	C17	5'-GGCUACGGUGAUGGCUCUGCGCAGG-3'	(((((......)))))......... ( -2.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chr16:70262484-70262508	AARS1	HGNC:20	ENSG00000090861	GGCUACGGUGAUGGCUCUGCGCAGG
hsa_m5C_4996	chr16	70261066	70261067	-	ENST00000675643	C1885	m5C	C7	5'-GGGGAUCAGGUCUGG-3'	..((((...)))).. ( -0.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	15	chr16:70261059-70261073	AARS1	HGNC:20	ENSG00000090861	GGGGAUCAGGUCUGG
hsa_m5C_4997	chr3	179399320	179399321	-	ENST00000676128	C3179	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr3:179399312-179399326	GNB4	HGNC:20731	ENSG00000114450	GGAGGCUGAGGCAGG
hsa_m5C_4998	chr3	179399314	179399315	-	ENST00000676128	C3185	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr3:179399312-179399326	GNB4	HGNC:20731	ENSG00000114450	GGAGGCUGAGGCAGG
hsa_m5C_4999	chrX	17376091	17376092	+	ENST00000676302	C893	m5C	C3	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	11	chrX:17376090-17376100	NHS	HGNC:7820	ENSG00000188158	GGCGGCGGCGG
hsa_m5C_5000	chrX	17376094	17376095	+	ENST00000676302	C896	m5C	C6	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	11	chrX:17376090-17376100	NHS	HGNC:7820	ENSG00000188158	GGCGGCGGCGG
hsa_m5C_5001	chrX	17376097	17376098	+	ENST00000676302	C899	m5C	C9	5'-GGCGGCGGCGG-3'	.((....)).. ( -1.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	11	chrX:17376090-17376100	NHS	HGNC:7820	ENSG00000188158	GGCGGCGGCGG
hsa_m5C_5002	chr9	131507424	131507425	+	ENST00000676640	C776	m5C	C5	5'-GGGGCCUUGUCGGUCCCCAUGG-3'	((((((.....))))))..... (-10.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr9:131507421-131507442	POMT1	HGNC:9202	ENSG00000130714	GGGGCCUUGUCGGUCCCCAUGG
hsa_m5C_5003	chr8	100712706	100712707	-	ENST00000676662	C922	m5C	C15	5'-GGUGGAACGGCAGACGG-3'	.......((.....)). ( -0.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr8:100712705-100712721	PABPC1	HGNC:8554	ENSG00000070756	GGUGGAACGGCAGACGG
hsa_m5C_5004	chr19	4542875	4542876	-	ENST00000676793	C3738	m5C	C19	5'-GGGAAGCGGGGACAAUGCCGGGGUUUCAGG-3'	..(((((..((......))...)))))... ( -5.80)	loop	mRNA	T24;293T;frontal_cortex,heart,liver,T24	UBS-seq:(High);RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;38168991	31358969;38168991	30	chr19:4542865-4542894	SEMA6B	HGNC:10739	ENSG00000167680	GGGAAGCGGGGACAAUGCCGGGGUUUCAGG
hsa_m5C_5005	chr19	2755075	2755076	-	ENST00000676943	C2501	m5C	C29	5'-GGGCCCGGGGCCCCCCAGGGAAGCUUACCCCUCCUGUGCUGGG-3'	(((((...)))))((((((((..........)))....))))) (-15.90)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	43	chr19:2755062-2755104	SGTA	HGNC:10819	ENSG00000104969	GGGCCCGGGGCCCCCCAGGGAAGCUUACCCCUCCUGUGCUGGG
hsa_m5C_5006	chr5	138568992	138568993	-	ENST00000677066	C625	m5C	C20	5'-GGUGAUGCCUGGGUUGAGGCUCAUGGG-3'	.((((.((((......))))))))... ( -9.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	27	chr5:138568986-138569012	HSPA9	HGNC:5244	ENSG00000113013	GGUGAUGCCUGGGUUGAGGCUCAUGGG
hsa_m5C_5007	chr2	231056892	231056893	+	ENST00000677230	C49	m5C	C7	5'-GGCGGCCUGAGGAGG-3'	.....(((....))) ( -1.50)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	15	chr2:231056887-231056901	PSMD1	HGNC:9554	ENSG00000173692	GGCGGCCUGAGGAGG
hsa_m5C_5008	chrX	71297458	71297459	+	ENST00000677274	C1734	m5C	C7	5'-GGAGCUCAG^GCAGGAGG-3'	....(((......))). ( -1.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chrX:71297453-71297461;71297836-71297843	NONO	HGNC:7871	ENSG00000147140	GGAGCUCAGGCAGGAGG
hsa_m5C_5009	chr1	226870641	226870642	+	ENST00000677599	C82	m5C	C13	5'-GGAGCGCGGCGGCAGAGCAG^G-3'	...((......))........ ( -1.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	21	chr1:226870630-226870649;226871262-226871262	PSEN2	HGNC:9509	ENSG00000143801	GGAGCGCGGCGGCAGAGCAGG
hsa_m5C_5010	chr8	11847767	11847768	-	ENST00000677671	C1139	m5C	C10	5'-GCUCCCGGCCCCCAUGCACGGGGGAGGG-3'	...(((..(((((......))))).))) (-14.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	28	chr8:11847750-11847777	CTSB	HGNC:2527	ENSG00000164733	GCUCCCGGCCCCCAUGCACGGGGGAGGG
hsa_m5C_5011	chr8	11847766	11847767	-	ENST00000677671	C1140	m5C	C11	5'-GCUCCCGGCCCCCAUGCACGGGGGAGGG-3'	...(((..(((((......))))).))) (-14.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	28	chr8:11847750-11847777	CTSB	HGNC:2527	ENSG00000164733	GCUCCCGGCCCCCAUGCACGGGGGAGGG
hsa_m5C_5012	chr8	11847765	11847766	-	ENST00000677671	C1141	m5C	C12	5'-GCUCCCGGCCCCCAUGCACGGGGGAGGG-3'	...(((..(((((......))))).))) (-14.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	28	chr8:11847750-11847777	CTSB	HGNC:2527	ENSG00000164733	GCUCCCGGCCCCCAUGCACGGGGGAGGG
hsa_m5C_5013	chr8	11847764	11847765	-	ENST00000677671	C1142	m5C	C13	5'-GCUCCCGGCCCCCAUGCACGGGGGAGGG-3'	...(((..(((((......))))).))) (-14.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	28	chr8:11847750-11847777	CTSB	HGNC:2527	ENSG00000164733	GCUCCCGGCCCCCAUGCACGGGGGAGGG
hsa_m5C_5014	chr9	128121239	128121240	-	ENST00000677691	C1377	m5C	C8	5'-GGAGGGGCUGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	11	chr9:128121237-128121247	PTGES2	HGNC:17822	ENSG00000148334	GGAGGGGCUGG
hsa_m5C_5015	chr7	100685108	100685109	-	ENST00000678049	C2469	m5C	C9	5'-GGGGUGGGCUCCUCUGCUGGCCCACCCGG-3'	.(((((((((........))))))))).. (-19.10)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	29	chr7:100685089-100685117	GIGYF1	HGNC:9126	ENSG00000146830	GGGGUGGGCUCCUCUGCUGGCCCACCCGG
hsa_m5C_5016	chr2	233477260	233477261	-	ENST00000678225	C3960	m5C	C4	5'-GGACGGCUCCUCUGAGGCCUGG-3'	....((((.......))))... ( -4.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr2:233477243-233477264	USP40	HGNC:20069	ENSG00000085982	GGACGGCUCCUCUGAGGCCUGG
hsa_m5C_5017	chr2	233475652	233475653	-	ENST00000678225	C5568	m5C	C13	5'-GGCGCGUGCGGCCGGGCCGG-3'	(((.((......)).))).. ( -8.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr2:233475646-233475665	USP40	HGNC:20069	ENSG00000085982	GGCGCGUGCGGCCGGGCCGG
hsa_m5C_5018	chr14	23308841	23308842	+	ENST00000678311	C675	m5C	C35	5'-GGGGCUGG^GCGGAGUUCACAGCUCUAUACGGGGACGGGG-3'	(((((((...........)))))))...((....))... (-10.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	39	chr14:23308192-23308199;23308816-23308846	BCL2L2	HGNC:995	ENSG00000129473	GGGGCUGGGCGGAGUUCACAGCUCUAUACGGGGACGGGG
hsa_m5C_5019	chr15	60355964	60355965	-	ENST00000678450	C1045	m5C	C18	5'-GGAGAAGGACAUUAUUUCGGACACAUCUGG-3'	.................((((....)))). ( -1.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr15:60355953-60355982	ANXA2	HGNC:537	ENSG00000182718	GGAGAAGGACAUUAUUUCGGACACAUCUGG
hsa_m5C_5020	chr15	60355955	60355956	-	ENST00000678450	C1054	m5C	C27	5'-GGAGAAGGACAUUAUUUCGGACACAUCUGG-3'	.................((((....)))). ( -1.90)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	30	chr15:60355953-60355982	ANXA2	HGNC:537	ENSG00000182718	GGAGAAGGACAUUAUUUCGGACACAUCUGG
hsa_m5C_5021	chr14	23325249	23325250	+	ENST00000678502	C1220	m5C	C26	5'-GGCCCCGGGGUCGCGUCUACAG^GGGCCGGG-3'	((((((..((......))...))))))... (-14.90)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	30872485	30	chr14:23324268-23324289;23325247-23325254	BCL2L2-PABPN1	HGNC:42959	ENSG00000258643	GGCCCCGGGGUCGCGUCUACAGGGGCCGGG
hsa_m5C_5022	chr19	49491459	49491460	+	ENST00000678510	C445	m5C	C16	5'-GGCUCACGAGGUUGGCUGG-3'	((((.((...)).)))).. ( -2.70)	loop	mRNA	heart,liver,Muscle;heart	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	19	chr19:49491445-49491463	RPL13A	HGNC:10304	ENSG00000142541	GGCUCACGAGGUUGGCUGG
hsa_m5C_5023	chr17	39202426	39202427	+	ENST00000678573	C924	m5C	C3	5'-GGCACAUGGGCAUAG^GUAAGCGG-3'	.........((........)).. ( -1.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr17:39202425-39202439;39202989-39202996	RPL19	HGNC:10312	ENSG00000108298	GGCACAUGGGCAUAGGUAAGCGG
hsa_m5C_5024	chr17	39202434	39202435	+	ENST00000678573	C932	m5C	C11	5'-GGCACAUGGGCAUAG^GUAAGCGG-3'	.........((........)).. ( -1.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr17:39202425-39202439;39202989-39202996	RPL19	HGNC:10312	ENSG00000108298	GGCACAUGGGCAUAGGUAAGCGG
hsa_m5C_5025	chr17	39204527	39204528	+	ENST00000678573	C1172	m5C	C7	5'-GGC^UGACCAGGCUGAGGCCCGCAGG-3'	..(((....(((....)))..))). ( -5.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chr17:39204185-39204187;39204525-39204546	RPL19	HGNC:10312	ENSG00000108298	GGCUGACCAGGCUGAGGCCCGCAGG
hsa_m5C_5026	chr17	39204539	39204540	+	ENST00000678573	C1184	m5C	C19	5'-GGC^UGACCAGGCUGAGGCCCGCAGG-3'	..(((....(((....)))..))). ( -5.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chr17:39204185-39204187;39204525-39204546	RPL19	HGNC:10312	ENSG00000108298	GGCUGACCAGGCUGAGGCCCGCAGG
hsa_m5C_5027	chr17	39204542	39204543	+	ENST00000678573	C1187	m5C	C22	5'-GGC^UGACCAGGCUGAGGCCCGCAGG-3'	..(((....(((....)))..))). ( -5.30)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chr17:39204185-39204187;39204525-39204546	RPL19	HGNC:10312	ENSG00000108298	GGCUGACCAGGCUGAGGCCCGCAGG
hsa_m5C_5028	chr17	39203033	39203034	+	ENST00000678573	C982	m5C	C6	5'-GGUCACAUGGAUGAGGAGAAUGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	25	chr17:39203029-39203053	RPL19	HGNC:10312	ENSG00000108298	GGUCACAUGGAUGAGGAGAAUGAGG
hsa_m5C_5029	chr17	42315107	42315108	-	ENST00000678906	C3275	m5C	C7	5'-GGAGGCCGAGGCGG-3'	....((....)).. ( -1.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr17:42315101-42315114	STAT3	HGNC:11364	ENSG00000168610	GGAGGCCGAGGCGG
hsa_m5C_5030	chr3	49360585	49360586	-	ENST00000678921	C2495	m5C	C6	5'-GGAGGCUGAGGCGG-3'	....((....)).. ( -0.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	14	chr3:49360578-49360591	RHOA	HGNC:667	ENSG00000067560	GGAGGCUGAGGCGG
hsa_m5C_5031	chr3	49360579	49360580	-	ENST00000678921	C2501	m5C	C12	5'-GGAGGCUGAGGCGG-3'	....((....)).. ( -0.40)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	14	chr3:49360578-49360591	RHOA	HGNC:667	ENSG00000067560	GGAGGCUGAGGCGG
hsa_m5C_5032	chr5	151803988	151803989	+	ENST00000678964	C1826	m5C	C12	5'-GGACCUGGAGGCCCUCGAGGUGGGCUGGG-3'	...(((...(((((.......)))))))) ( -9.90)	loop	mRNA	spleen	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	29	chr5:151803978-151804006	G3BP1	HGNC:30292	ENSG00000145907	GGACCUGGAGGCCCUCGAGGUGGGCUGGG
hsa_m5C_5033	chr9	104825821	104825822	-	ENST00000678995	C2716	m5C	C10	5'-GGAGCAGGGCAUUGGAGUGCAGUGG-3'	....((..((((....))))..)). ( -4.40)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr9:104825807-104825831	ABCA1	HGNC:29	ENSG00000165029	GGAGCAGGGCAUUGGAGUGCAGUGG
hsa_m5C_5034	chr2	169606051	169606052	+	ENST00000679107	C498	m5C	C15	5'-G^GUGAAAAGGGGACCGG-3'	(((.........))).. ( -2.30)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	17	chr2:169604261-169604261;169606039-169606054	PPIG	HGNC:14650	ENSG00000138398	GGUGAAAAGGGGACCGG
hsa_m5C_5035	chr10	89340456	89340457	+	ENST00000679781	C2304	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr10:89340452-89340466	IFIT3	HGNC:5411	ENSG00000119917	GGAGGCUGAGGCAGG
hsa_m5C_5036	chr10	89340322	89340323	+	ENST00000679781	C2170	m5C	C7	5'-GGGAGGCCGAGGUGG-3'	((....))....... ( -1.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	15	chr10:89340317-89340331	IFIT3	HGNC:5411	ENSG00000119917	GGGAGGCCGAGGUGG
hsa_m5C_5037	chr3	42659624	42659625	+	ENST00000680014	C1542	m5C	C4	5'-GGGCUGGGGGCCAAGGUGAAGCUGG-3'	.((((....((....))..)))).. ( -4.50)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr3:42659622-42659646	ZBTB47	HGNC:26955	ENSG00000114853	GGGCUGGGGGCCAAGGUGAAGCUGG
hsa_m5C_5038	chr3	42659631	42659632	+	ENST00000680014	C1549	m5C	C11	5'-GGGCUGGGGGCCAAGGUGAAGCUGG-3'	.((((....((....))..)))).. ( -4.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	25	chr3:42659622-42659646	ZBTB47	HGNC:26955	ENSG00000114853	GGGCUGGGGGCCAAGGUGAAGCUGG
hsa_m5C_5039	chr3	42659632	42659633	+	ENST00000680014	C1550	m5C	C12	5'-GGGCUGGGGGCCAAGGUGAAGCUGG-3'	.((((....((....))..)))).. ( -4.50)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	25	chr3:42659622-42659646	ZBTB47	HGNC:26955	ENSG00000114853	GGGCUGGGGGCCAAGGUGAAGCUGG
hsa_m5C_5040	chr1	197146473	197146474	-	ENST00000680265	C196	m5C	C6	5'-GGGAGCGGGGCAAGGAGAUCCAGG-3'	.(((..............)))... ( -1.40)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	24	chr1:197146456-197146479	ASPM	HGNC:19048	ENSG00000066279	GGGAGCGGGGCAAGGAGAUCCAGG
hsa_m5C_5041	chr6	56606338	56606339	-	ENST00000680361	C8532	m5C	C3	5'-GGCAGUUGGAGAGGAAGAAAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr6:56606320-56606341	DST	HGNC:1090	ENSG00000151914	GGCAGUUGGAGAGGAAGAAAGG
hsa_m5C_5042	chr1	228291987	228291988	+	ENST00000680850	C11877	m5C	C3	5'-GGCCCCUGUGGAGUGGAGGAAGGGG-3'	..(((((.............))))) ( -6.90)	loop	mRNA	HeLa	RBS-Seq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30872485	25	chr1:228291986-228292010	OBSCN	HGNC:15719	ENSG00000154358	GGCCCCUGUGGAGUGGAGGAAGGGG
hsa_m5C_5043	chr17	81844086	81844087	-	ENST00000681020	C2554	m5C	C7	5'-GGAUCUCGAGGACCUGGAAGAAGCAGAGG-3'	.............(((.......)))... ( -1.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr17:81844065-81844093	P4HB	HGNC:8548	ENSG00000185624	GGAUCUCGAGGACCUGGAAGAAGCAGAGG
hsa_m5C_5044	chr19	42273126	42273127	+	ENST00000681038	C1484	m5C	C10	5'-GGAGGGGAGCCAGG-3'	...((....))... ( -1.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	14	chr19:42273118-42273131	CIC	HGNC:14214	ENSG00000079432	GGAGGGGAGCCAGG
hsa_m5C_5045	chr19	42273127	42273128	+	ENST00000681038	C1485	m5C	C11	5'-GGAGGGGAGCCAGG-3'	...((....))... ( -1.40)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	28418038	14	chr19:42273118-42273131	CIC	HGNC:14214	ENSG00000079432	GGAGGGGAGCCAGG
hsa_m5C_5046	chr17	81510417	81510418	-	ENST00000681052	C1486	m5C	C9	5'-GGCUUGGUCACUUCGUGGCUAAGG-3'	..(((((((((...))))))))). (-10.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	24	chr17:81510403-81510426	ACTG1	HGNC:144	ENSG00000184009	GGCUUGGUCACUUCGUGGCUAAGG
hsa_m5C_5047	chr17	516478	516479	-	ENST00000681160	C5688	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr17:516476-516490	VPS53	HGNC:25608	ENSG00000141252	GGAGGCUGAGGCAGG
hsa_m5C_5048	chr5	179724745	179724746	+	ENST00000681168	C2413	m5C	C16	5'-GGAAGAGGAAAAGGACAAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr5:179724731-179724750	CANX	HGNC:1473	ENSG00000127022	GGAAGAGGAAAAGGACAAGG
hsa_m5C_5049	chr5	179728714	179728715	+	ENST00000681168	C2655	m5C	C17	5'-GGUCCUAGGAGAGGACCUGG-3'	((((((.....))))))... ( -9.30)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	20	chr5:179728699-179728718	CANX	HGNC:1473	ENSG00000127022	GGUCCUAGGAGAGGACCUGG
hsa_m5C_5050	chr11	64765373	64765374	-	ENST00000681407	C2868	m5C	C4	5'-GGACGGAAUCGGAACACGCUGG-3'	...(((...((.....))))). ( -1.10)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	22	chr11:64765356-64765377	SF1	HGNC:12950	ENSG00000168066	GGACGGAAUCGGAACACGCUGG
hsa_m5C_5051	chr11	64765886	64765887	-	ENST00000681407	C2355	m5C	C4	5'-GGGCAUGGGGGUGGCGGG-3'	...(((....)))..... ( -0.40)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	18	chr11:64765873-64765890	SF1	HGNC:12950	ENSG00000168066	GGGCAUGGGGGUGGCGGG
hsa_m5C_5052	chr11	64778326	64778327	-	ENST00000681407	C195	m5C	C37	5'-GGGUAAGCUGGGCCCCCCCGGGCUGCCCCCGCUCCCCGGG-3'	((((.......)))).((((((..((....))..)))))) (-19.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	40	chr11:64778324-64778363	SF1	HGNC:12950	ENSG00000168066	GGGUAAGCUGGGCCCCCCCGGGCUGCCCCCGCUCCCCGGG
hsa_m5C_5053	chr14	74661316	74661317	-	ENST00000681599	C5455	m5C	C17	5'-GGCCAGGUGAAAGGGCCAGG-3'	((((.........))))... ( -6.70)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chr14:74661314-74661333	AREL1	HGNC:20363	ENSG00000119682	GGCCAGGUGAAAGGGCCAGG
hsa_m5C_5054	chr6	99402704	99402705	-	ENST00000681615	C1308	m5C	C7	5'-G^GUGGACUGGGUGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	30526041	14	chr6:99402698-99402710;99403829-99403829	PNISR	HGNC:21222	ENSG00000132424	GGUGGACUGGGUGG
hsa_m5C_5055	chr11	57661346	57661347	+	ENST00000681650	C1471	m5C	C26	5'-GGUGACCAGUGUGGACCUGGAGCAUCAGG-3'	((((.((((.......))))..))))... ( -6.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr11:57661322-57661350	CLP1	HGNC:16999	ENSG00000172409	GGUGACCAGUGUGGACCUGGAGCAUCAGG
hsa_m5C_5056	chr10	49472986	49472987	-	ENST00000681659	C2696	m5C	C8	5'-GGGUGGGCGGCUUAGG-3'	((((.....))))... ( -0.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr10:49472979-49472994	ERCC6	HGNC:3438	ENSG00000225830	GGGUGGGCGGCUUAGG
hsa_m5C_5057	chr2	127387890	127387891	-	ENST00000682094	C85	m5C	C24	5'-GGUGCCGCGGCCGCUGGGCGCAGCGUUCGG-3'	.......(((.(((((....))))).))). (-10.70)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr2:127387885-127387914	MAP3K2	HGNC:6854	ENSG00000169967	GGUGCCGCGGCCGCUGGGCGCAGCGUUCGG
hsa_m5C_5058	chrX	150503469	150503470	+	ENST00000682253	C2869	m5C	C21	5'-GGGCAGCUGGGAUCCGAAGGCCUGGAGG-3'	((((...(((...)))...))))..... ( -6.40)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chrX:150503450-150503477	MAMLD1	HGNC:2568	ENSG00000013619	GGGCAGCUGGGAUCCGAAGGCCUGGAGG
hsa_m5C_5059	chr4	6277451	6277452	+	ENST00000682275	C167	m5C	C7	5'-GGCCG^GCAGGAUGG-3'	..((....)).... ( -1.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	28418038	14	chr4:6270010-6270014;6277451-6277459	WFS1	HGNC:12762	ENSG00000109501	GGCCGGCAGGAUGG
hsa_m5C_5060	chr9	128107762	128107763	+	ENST00000682371	C2352	m5C	C13	5'-GGAGCCUGGAGGCCGG-3'	...(((....)))... ( -3.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	16	chr9:128107751-128107766	SLC25A25	HGNC:20663	ENSG00000148339	GGAGCCUGGAGGCCGG
hsa_m5C_5061	chr11	128976629	128976630	-	ENST00000682385	C2254	m5C	C6	5'-G^GUGGCAGGGCAGAAGG-3'	NA	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	17	chr11:128976619-128976634;128978770-128978770	ARHGAP32	HGNC:17399	ENSG00000134909	GGUGGCAGGGCAGAAGG
hsa_m5C_5062	chr5	71657472	71657473	+	ENST00000682876	C2543	m5C	C3	5'-GGCUGGAGUGCGGUGG-3'	.((((.....)))).. ( -2.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	16	chr5:71657471-71657486	MCCC2	HGNC:6937	ENSG00000131844	GGCUGGAGUGCGGUGG
hsa_m5C_5063	chr5	71657480	71657481	+	ENST00000682876	C2551	m5C	C11	5'-GGCUGGAGUGCGGUGG-3'	.((((.....)))).. ( -2.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	16	chr5:71657471-71657486	MCCC2	HGNC:6937	ENSG00000131844	GGCUGGAGUGCGGUGG
hsa_m5C_5064	chr13	23355148	23355149	-	ENST00000682944	C2102	m5C	C28	5'-GGAGAGAGCUGGACCAGUGGAGAGACCCGG-3'	.......((((...))))((......)).. ( -2.20)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr13:23355147-23355176	SACS	HGNC:10519	ENSG00000151835	GGAGAGAGCUGGACCAGUGGAGAGACCCGG
hsa_m5C_5065	chr3	47852841	47852842	-	ENST00000683076	C7085	m5C	C4	5'-GGCCCCAACUCGGGCUCCCGGGUCCUUGG-3'	....(((((((((....))))))...))) ( -8.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr3:47852817-47852845	MAP4	HGNC:6862	ENSG00000047849	GGCCCCAACUCGGGCUCCCGGGUCCUUGG
hsa_m5C_5066	chr3	47852840	47852841	-	ENST00000683076	C7086	m5C	C5	5'-GGCCCCAACUCGGGCUCCCGGGUCCUUGG-3'	....(((((((((....))))))...))) ( -8.90)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr3:47852817-47852845	MAP4	HGNC:6862	ENSG00000047849	GGCCCCAACUCGGGCUCCCGGGUCCUUGG
hsa_m5C_5067	chr14	68882484	68882485	-	ENST00000683198	C2238	m5C	C21	5'-GGAGCCCAGGCCAAUGUCAUCGGGCCCUGG-3'	((.((((.(((....)))...))))))... (-10.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr14:68882476-68882505	ACTN1	HGNC:163	ENSG00000072110	GGAGCCCAGGCCAAUGUCAUCGGGCCCUGG
hsa_m5C_5068	chr14	68882480	68882481	-	ENST00000683198	C2242	m5C	C25	5'-GGAGCCCAGGCCAAUGUCAUCGGGCCCUGG-3'	((.((((.(((....)))...))))))... (-10.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr14:68882476-68882505	ACTN1	HGNC:163	ENSG00000072110	GGAGCCCAGGCCAAUGUCAUCGGGCCCUGG
hsa_m5C_5069	chr14	68882478	68882479	-	ENST00000683198	C2244	m5C	C27	5'-GGAGCCCAGGCCAAUGUCAUCGGGCCCUGG-3'	((.((((.(((....)))...))))))... (-10.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr14:68882476-68882505	ACTN1	HGNC:163	ENSG00000072110	GGAGCCCAGGCCAAUGUCAUCGGGCCCUGG
hsa_m5C_5070	chr22	42210016	42210017	-	ENST00000683686	C6629	m5C	C4	5'-GGACACUGAGGAGGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr22:42210004-42210020	TCF20	HGNC:11631	ENSG00000100207	GGACACUGAGGAGGAGG
hsa_m5C_5071	chr22	42210014	42210015	-	ENST00000683686	C6631	m5C	C6	5'-GGACACUGAGGAGGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr22:42210004-42210020	TCF20	HGNC:11631	ENSG00000100207	GGACACUGAGGAGGAGG
hsa_m5C_5072	chr22	42212229	42212230	-	ENST00000683686	C4416	m5C	C16	5'-GGGCGGAGCAGAGGCCCAGGGG-3'	((((.........))))..... ( -7.70)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr22:42212224-42212245	TCF20	HGNC:11631	ENSG00000100207	GGGCGGAGCAGAGGCCCAGGGG
hsa_m5C_5073	chrX	71464468	71464469	+	ENST00000683782	C6165	m5C	C6	5'-GGAGGCCGAGGCGG-3'	....((....)).. ( -1.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	14	chrX:71464464-71464477	TAF1	HGNC:11535	ENSG00000147133	GGAGGCCGAGGCGG
hsa_m5C_5074	chr3	56682842	56682843	-	ENST00000683822	C423	m5C	C8	5'-GGCGGCGCUGGGCGUGAGGAGAACGCGG-3'	(((...)))..((((.......)))).. ( -5.40)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr3:56682823-56682850	TASOR	HGNC:30314	ENSG00000163946	GGCGGCGCUGGGCGUGAGGAGAACGCGG
hsa_m5C_5075	chr3	56682837	56682838	-	ENST00000683822	C428	m5C	C13	5'-GGCGGCGCUGGGCGUGAGGAGAACGCGG-3'	(((...)))..((((.......)))).. ( -5.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	28	chr3:56682823-56682850	TASOR	HGNC:30314	ENSG00000163946	GGCGGCGCUGGGCGUGAGGAGAACGCGG
hsa_m5C_5076	chr9	137215783	137215784	+	ENST00000684003	C1492	m5C	C5	5'-GGAGCGUGUGGCCCAGGGCCAGACUG^G-3'	.....((.(((((...))))).))... (-11.00)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr9:137215780-137215805;137215899-137215899	NDOR1	HGNC:29838	ENSG00000188566	GGAGCGUGUGGCCCAGGGCCAGACUGG
hsa_m5C_5077	chr11	62690619	62690620	-	ENST00000684475	C1483	m5C	C3	5'-GGCCAGUGAUG^GUUCAGGCUCCUGG-3'	.((((....)))).(((....))). ( -5.30)	loop	mRNA	Testis;HeLa	UBS-seq:(High);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	31061524;38168991	25	chr11:62690508-62690521;62690612-62690622	BSCL2	HGNC:15832	ENSG00000168000	GGCCAGUGAUGGUUCAGGCUCCUGG
hsa_m5C_5078	chr1	33491659	33491660	+	ENST00000684572	C1559	m5C	C5	5'-GGGGCCCAGGAUUGCAGG-3'	...((........))... ( -0.10)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	18	chr1:33491656-33491673	ZSCAN20	HGNC:13093	ENSG00000121903	GGGGCCCAGGAUUGCAGG
hsa_m5C_5079	chr1	33491660	33491661	+	ENST00000684572	C1560	m5C	C6	5'-GGGGCCCAGGAUUGCAGG-3'	...((........))... ( -0.10)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	18	chr1:33491656-33491673	ZSCAN20	HGNC:13093	ENSG00000121903	GGGGCCCAGGAUUGCAGG
hsa_m5C_5080	chr1	33491661	33491662	+	ENST00000684572	C1561	m5C	C7	5'-GGGGCCCAGGAUUGCAGG-3'	...((........))... ( -0.10)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	18	chr1:33491656-33491673	ZSCAN20	HGNC:13093	ENSG00000121903	GGGGCCCAGGAUUGCAGG
hsa_m5C_5081	chr9	131394254	131394255	+	ENST00000684596	C203	m5C	C5	5'-GGAACCAGACCAG^GCAGAUCGGGAGCGG-3'	....((......)).....((....)). ( -1.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr9:131394251-131394263;131430090-131430104	PRRC2B	HGNC:28121	ENSG00000288701	GGAACCAGACCAGGCAGAUCGGGAGCGG
hsa_m5C_5082	chr9	131394255	131394256	+	ENST00000684596	C204	m5C	C6	5'-GGAACCAGACCAG^GCAGAUCGGGAGCGG-3'	....((......)).....((....)). ( -1.00)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	28	chr9:131394251-131394263;131430090-131430104	PRRC2B	HGNC:28121	ENSG00000288701	GGAACCAGACCAGGCAGAUCGGGAGCGG
hsa_m5C_5083	chr9	131474801	131474802	+	ENST00000684596	C2939	m5C	C11	5'-GGGAGACACCCCGGGAGGGGACGG-3'	........((((....)))).... ( -7.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	24	chr9:131474792-131474815	PRRC2B	HGNC:28121	ENSG00000288701	GGGAGACACCCCGGGAGGGGACGG
hsa_m5C_5084	chr9	131474802	131474803	+	ENST00000684596	C2940	m5C	C12	5'-GGGAGACACCCCGGGAGGGGACGG-3'	........((((....)))).... ( -7.70)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	24	chr9:131474792-131474815	PRRC2B	HGNC:28121	ENSG00000288701	GGGAGACACCCCGGGAGGGGACGG
hsa_m5C_5085	chr9	131446422	131446423	+	ENST00000684596	C902	m5C	C8	5'-GGGAGGGCGGUGGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMVar database	28418038	14	chr9:131446416-131446429	PRRC2B	HGNC:28121	ENSG00000288701	GGGAGGGCGGUGGG
hsa_m5C_5086	chr9	136454249	136454250	-	ENST00000684901	C6229	m5C	C3	5'-GGCCCCUGGAGCCGGGUCCUGG-3'	(((((........))))).... ( -7.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr9:136454231-136454252	SEC16A	HGNC:29006	ENSG00000148396	GGCCCCUGGAGCCGGGUCCUGG
hsa_m5C_5087	chr9	136454248	136454249	-	ENST00000684901	C6230	m5C	C4	5'-GGCCCCUGGAGCCGGGUCCUGG-3'	(((((........))))).... ( -7.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr9:136454231-136454252	SEC16A	HGNC:29006	ENSG00000148396	GGCCCCUGGAGCCGGGUCCUGG
hsa_m5C_5088	chr9	136454247	136454248	-	ENST00000684901	C6231	m5C	C5	5'-GGCCCCUGGAGCCGGGUCCUGG-3'	(((((........))))).... ( -7.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr9:136454231-136454252	SEC16A	HGNC:29006	ENSG00000148396	GGCCCCUGGAGCCGGGUCCUGG
hsa_m5C_5089	chr9	136454246	136454247	-	ENST00000684901	C6232	m5C	C6	5'-GGCCCCUGGAGCCGGGUCCUGG-3'	(((((........))))).... ( -7.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr9:136454231-136454252	SEC16A	HGNC:29006	ENSG00000148396	GGCCCCUGGAGCCGGGUCCUGG
hsa_m5C_5090	chr9	136445666	136445667	-	ENST00000684901	C7139	m5C	C4	5'-GGCCUGAGGGUUCCCAGGGAGG-3'	..((((.((...)))))).... ( -6.30)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	22	chr9:136445649-136445670	SEC16A	HGNC:29006	ENSG00000148396	GGCCUGAGGGUUCCCAGGGAGG
hsa_m5C_5091	chr1	234373318	234373319	-	ENST00000685022	C346	m5C	C9	5'-GGACAAGGCGAGCCGAGGAGUUUGUGUGG-3'	...((..((((((......)))))).)). ( -5.00)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr1:234373299-234373327	COA6-AS1	HGNC:40825	ENSG00000231663	GGACAAGGCGAGCCGAGGAGUUUGUGUGG
hsa_m5C_5092	chr1	234373313	234373314	-	ENST00000685022	C351	m5C	C14	5'-GGACAAGGCGAGCCGAGGAGUUUGUGUGG-3'	...((..((((((......)))))).)). ( -5.00)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	29	chr1:234373299-234373327	COA6-AS1	HGNC:40825	ENSG00000231663	GGACAAGGCGAGCCGAGGAGUUUGUGUGG
hsa_m5C_5093	chr2	218344900	218344901	+	ENST00000685415	C1217	m5C	C17	5'-GGGGCCGGGGCCGGGCCCCACUGGG-3'	((((((.......))))))...... (-14.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr2:218344885-218344909	PNKD	HGNC:9153	ENSG00000127838	GGGGCCGGGGCCGGGCCCCACUGGG
hsa_m5C_5094	chr2	218344901	218344902	+	ENST00000685415	C1218	m5C	C18	5'-GGGGCCGGGGCCGGGCCCCACUGGG-3'	((((((.......))))))...... (-14.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	25	chr2:218344885-218344909	PNKD	HGNC:9153	ENSG00000127838	GGGGCCGGGGCCGGGCCCCACUGGG
hsa_m5C_5095	chr13	37001307	37001308	+	ENST00000685624	C523	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr13:37001303-37001317	EXOSC8	HGNC:17035	ENSG00000120699	GGAGGCUGAGGCAGG
hsa_m5C_5096	chr13	37001313	37001314	+	ENST00000685624	C529	m5C	C12	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	15	chr13:37001303-37001317	EXOSC8	HGNC:17035	ENSG00000120699	GGAGGCUGAGGCAGG
hsa_m5C_5097	chr13	37001276	37001277	+	ENST00000685624	C492	m5C	C11	5'-GGCGUGGUGGCGG-3'	.((......)).. ( -2.00)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	13	chr13:37001267-37001279	EXOSC8	HGNC:17035	ENSG00000120699	GGCGUGGUGGCGG
hsa_m5C_5098	chr22	36292204	36292205	-	ENST00000685801	C4402	m5C	C7	5'-GGAGGACAGUGUGGGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	16	chr22:36292196-36292211	MYH9	HGNC:7579	ENSG00000100345	GGAGGACAGUGUGGGG
hsa_m5C_5099	chr22	36387944	36387945	-	ENST00000685801	C57	m5C	C3	5'-GGCAGGGCACGGAAGG-3'	NA	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	16	chr22:36387932-36387947	MYH9	HGNC:7579	ENSG00000100345	GGCAGGGCACGGAAGG
hsa_m5C_5100	chr22	36301618	36301619	-	ENST00000685801	C2823	m5C	C3	5'-GGCCAAGGAGGAGG-3'	..((.....))... ( -0.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	m6A-Atlas database	30526041	14	chr22:36301608-36301621	MYH9	HGNC:7579	ENSG00000100345	GGCCAAGGAGGAGG
hsa_m5C_5101	chr22	36301617	36301618	-	ENST00000685801	C2824	m5C	C4	5'-GGCCAAGGAGGAGG-3'	..((.....))... ( -0.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	14	chr22:36301608-36301621	MYH9	HGNC:7579	ENSG00000100345	GGCCAAGGAGGAGG
hsa_m5C_5102	chr22	36282342	36282343	-	ENST00000685801	C6485	m5C	C16	5'-GGCGAGCAGGGCAGGCCCCCGGG-3'	(((..((...))..)))...... ( -5.80)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	23	chr22:36282336-36282358	MYH9	HGNC:7579	ENSG00000100345	GGCGAGCAGGGCAGGCCCCCGGG
hsa_m5C_5103	chr22	36301576	36301577	-	ENST00000685801	C2865	m5C	C3	5'-GGCUGCGGAGAACAGGCUCACGG-3'	.....(((((......))).)). ( -3.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr22:36301557-36301579	MYH9	HGNC:7579	ENSG00000100345	GGCUGCGGAGAACAGGCUCACGG
hsa_m5C_5104	chr22	36301573	36301574	-	ENST00000685801	C2868	m5C	C6	5'-GGCUGCGGAGAACAGGCUCACGG-3'	.....(((((......))).)). ( -3.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr22:36301557-36301579	MYH9	HGNC:7579	ENSG00000100345	GGCUGCGGAGAACAGGCUCACGG
hsa_m5C_5105	chr22	36301566	36301567	-	ENST00000685801	C2875	m5C	C13	5'-GGCUGCGGAGAACAGGCUCACGG-3'	.....(((((......))).)). ( -3.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr22:36301557-36301579	MYH9	HGNC:7579	ENSG00000100345	GGCUGCGGAGAACAGGCUCACGG
hsa_m5C_5106	chr22	36301560	36301561	-	ENST00000685801	C2881	m5C	C19	5'-GGCUGCGGAGAACAGGCUCACGG-3'	.....(((((......))).)). ( -3.70)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	23	chr22:36301557-36301579	MYH9	HGNC:7579	ENSG00000100345	GGCUGCGGAGAACAGGCUCACGG
hsa_m5C_5107	chrX	110317837	110317838	-	ENST00000686065	C248	m5C	C12	5'-GGCUGCGGCGGCGGCGGCGG-3'	.(((((....)))))..... ( -8.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chrX:110317830-110317849	AMMECR1	HGNC:467	ENSG00000101935	GGCUGCGGCGGCGGCGGCGG
hsa_m5C_5108	chrX	110317834	110317835	-	ENST00000686065	C251	m5C	C15	5'-GGCUGCGGCGGCGGCGGCGG-3'	.(((((....)))))..... ( -8.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chrX:110317830-110317849	AMMECR1	HGNC:467	ENSG00000101935	GGCUGCGGCGGCGGCGGCGG
hsa_m5C_5109	chrX	110317831	110317832	-	ENST00000686065	C254	m5C	C18	5'-GGCUGCGGCGGCGGCGGCGG-3'	.(((((....)))))..... ( -8.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	20	chrX:110317830-110317849	AMMECR1	HGNC:467	ENSG00000101935	GGCUGCGGCGGCGGCGGCGG
hsa_m5C_5110	chr1	114719656	114719657	-	ENST00000688211	C2820	m5C	C3	5'-GGCAGGAGAUGAGGUGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	17	chr1:114719643-114719659	CSDE1	HGNC:29905	ENSG00000009307	GGCAGGAGAUGAGGUGG
hsa_m5C_5111	chr3	12583813	12583814	-	ENST00000688543	C2949	m5C	C5	5'-GGGGCGGGGCCGCAGG-3'	...(((....)))... ( -3.10)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	16	chr3:12583803-12583818	RAF1	HGNC:9829	ENSG00000132155	GGGGCGGGGCCGCAGG
hsa_m5C_5112	chr22	50462367	50462368	-	ENST00000689129	C2467	m5C	C5	5'-GGAGCUGGUGCAGAAGGAGG-3'	...((....))......... ( -1.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr22:50462353-50462372	SBF1	HGNC:10542	ENSG00000100241	GGAGCUGGUGCAGAAGGAGG
hsa_m5C_5113	chr22	50462361	50462362	-	ENST00000689129	C2473	m5C	C11	5'-GGAGCUGGUGCAGAAGGAGG-3'	...((....))......... ( -1.40)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	20	chr22:50462353-50462372	SBF1	HGNC:10542	ENSG00000100241	GGAGCUGGUGCAGAAGGAGG
hsa_m5C_5114	chr22	50465114	50465115	-	ENST00000689129	C1452	m5C	C3	5'-GGCCAGCGUGGGCUGGUAGAGG-3'	.((((((....))))))..... (-10.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr22:50465096-50465117	SBF1	HGNC:10542	ENSG00000100241	GGCCAGCGUGGGCUGGUAGAGG
hsa_m5C_5115	chr22	50465113	50465114	-	ENST00000689129	C1453	m5C	C4	5'-GGCCAGCGUGGGCUGGUAGAGG-3'	.((((((....))))))..... (-10.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr22:50465096-50465117	SBF1	HGNC:10542	ENSG00000100241	GGCCAGCGUGGGCUGGUAGAGG
hsa_m5C_5116	chr22	50465110	50465111	-	ENST00000689129	C1456	m5C	C7	5'-GGCCAGCGUGGGCUGGUAGAGG-3'	.((((((....))))))..... (-10.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr22:50465096-50465117	SBF1	HGNC:10542	ENSG00000100241	GGCCAGCGUGGGCUGGUAGAGG
hsa_m5C_5117	chr14	103522139	103522140	-	ENST00000689346	C308	m5C	C15	5'-GGCUGCGUGGCGGGCGACGAGG-3'	..((((...))))......... ( -2.90)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	22	chr14:103522133-103522154	CKB	HGNC:1991	ENSG00000166165	GGCUGCGUGGCGGGCGACGAGG
hsa_m5C_5118	chr14	103519944	103519945	-	ENST00000689346	C1214	m5C	C10	5'-GGUGGUGGACGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	30526041	12	chr14:103519943-103519954	CKB	HGNC:1991	ENSG00000166165	GGUGGUGGACGG
hsa_m5C_5119	chr12	25959002	25959003	+	ENST00000689635	C322	m5C	C9	5'-GGGGCGCGCGGCGCGGGGAGCGCCGGGGAGUGCCGGGG-3'	..(((((.((((((.....))))))....))))).... (-19.90)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;RMVar database	28418038	38	chr12:25958995-25959032	RASSF8	HGNC:13232	ENSG00000123094	GGGGCGCGCGGCGCGGGGAGCGCCGGGGAGUGCCGGGG
hsa_m5C_5120	chr5	138032967	138032968	-	ENST00000689681	C112	m5C	C7	5'-GGGUAUCCGGGGGGUCGCUUACCGGG-3'	......(((((((....))).)))). ( -7.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	26	chr5:138032949-138032974	FAM13B	HGNC:1335	ENSG00000031003	GGGUAUCCGGGGGGUCGCUUACCGGG
hsa_m5C_5121	chr15	66387031	66387032	+	ENST00000689951	C121	m5C	C8	5'-GGAGGGACUGGUUGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	15	chr15:66387025-66387039	MAP2K1	HGNC:6840	ENSG00000169032	GGAGGGACUGGUUGG
hsa_m5C_5122	chr15	66387238	66387239	+	ENST00000689951	C328	m5C	C4	5'-GGGCCCGCGGCCCGGACUUGG-3'	(((((...)))))........ ( -9.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr15:66387236-66387256	MAP2K1	HGNC:6840	ENSG00000169032	GGGCCCGCGGCCCGGACUUGG
hsa_m5C_5123	chr15	66387242	66387243	+	ENST00000689951	C332	m5C	C8	5'-GGGCCCGCGGCCCGGACUUGG-3'	(((((...)))))........ ( -9.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	21	chr15:66387236-66387256	MAP2K1	HGNC:6840	ENSG00000169032	GGGCCCGCGGCCCGGACUUGG
hsa_m5C_5124	chr15	52046983	52046984	+	ENST00000691380	C1488	m5C	C17	5'-GGUGACUUUGGUCUUGCACGGAUCAUGG-3'	.....((.((((((.....)))))).)) ( -4.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr15:52046968-52046995	MAPK6	HGNC:6879	ENSG00000069956	GGUGACUUUGGUCUUGCACGGAUCAUGG
hsa_m5C_5125	chr9	131446422	131446423	+	ENST00000691540	C379	m5C	C8	5'-GGGAGGGCGGUGGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMVar database	28418038	14	chr9:131446416-131446429	NA	NA	ENSG00000288841	GGGAGGGCGGUGGG
hsa_m5C_5126	chr4	119212780	119212781	+	ENST00000692078	C69	m5C	C4	5'-GGGCUGGGCCAGCGGGAGGUAGCUCUGUGGG-3'	((((((..((....))...))))))...... ( -7.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	31	chr4:119212778-119212808	USP53	HGNC:29255	ENSG00000145390	GGGCUGGGCCAGCGGGAGGUAGCUCUGUGGG
hsa_m5C_5127	chr4	119212785	119212786	+	ENST00000692078	C74	m5C	C9	5'-GGGCUGGGCCAGCGGGAGGUAGCUCUGUGGG-3'	((((((..((....))...))))))...... ( -7.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	31	chr4:119212778-119212808	USP53	HGNC:29255	ENSG00000145390	GGGCUGGGCCAGCGGGAGGUAGCUCUGUGGG
hsa_m5C_5128	chr15	76311449	76311450	-	ENST00000692691	C281	m5C	C16	5'-GGUGACUGGCUGAGGCGGCGCCAGUUGG-3'	...(((((((.........))))))).. ( -9.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr15:76311438-76311465	ETFA	HGNC:3481	ENSG00000140374	GGUGACUGGCUGAGGCGGCGCCAGUUGG
hsa_m5C_5129	chr3	49117119	49117120	-	ENST00000692912	C1052	m5C	C20	5'-GGGCCAGAGGGGGACGGGUCCAGGG-3'	(((((...........))))).... ( -7.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;RNAfold:(High)	RMVar database	28418038	25	chr3:49117115-49117139	USP19	HGNC:12617	ENSG00000172046	GGGCCAGAGGGGGACGGGUCCAGGG
hsa_m5C_5130	chr3	49117118	49117119	-	ENST00000692912	C1053	m5C	C21	5'-GGGCCAGAGGGGGACGGGUCCAGGG-3'	(((((...........))))).... ( -7.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	25	chr3:49117115-49117139	USP19	HGNC:12617	ENSG00000172046	GGGCCAGAGGGGGACGGGUCCAGGG
hsa_m5C_5131	chr4	76949106	76949107	-	ENST00000693132	C514	m5C	C3	5'-GGCGCGCGGGCAGACAGGGGAUCCCAUUGG-3'	.((......)).....(((...)))..... ( -4.50)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr4:76949080-76949109	NA	NA	ENSG00000289586	GGCGCGCGGGCAGACAGGGGAUCCCAUUGG
hsa_m5C_5132	chr4	76949104	76949105	-	ENST00000693132	C516	m5C	C5	5'-GGCGCGCGGGCAGACAGGGGAUCCCAUUGG-3'	.((......)).....(((...)))..... ( -4.50)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr4:76949080-76949109	NA	NA	ENSG00000289586	GGCGCGCGGGCAGACAGGGGAUCCCAUUGG
hsa_m5C_5133	chr4	76949102	76949103	-	ENST00000693132	C518	m5C	C7	5'-GGCGCGCGGGCAGACAGGGGAUCCCAUUGG-3'	.((......)).....(((...)))..... ( -4.50)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr4:76949080-76949109	NA	NA	ENSG00000289586	GGCGCGCGGGCAGACAGGGGAUCCCAUUGG
hsa_m5C_5134	chr4	76949098	76949099	-	ENST00000693132	C522	m5C	C11	5'-GGCGCGCGGGCAGACAGGGGAUCCCAUUGG-3'	.((......)).....(((...)))..... ( -4.50)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr4:76949080-76949109	NA	NA	ENSG00000289586	GGCGCGCGGGCAGACAGGGGAUCCCAUUGG
hsa_m5C_5135	chr4	76949094	76949095	-	ENST00000693132	C526	m5C	C15	5'-GGCGCGCGGGCAGACAGGGGAUCCCAUUGG-3'	.((......)).....(((...)))..... ( -4.50)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr4:76949080-76949109	NA	NA	ENSG00000289586	GGCGCGCGGGCAGACAGGGGAUCCCAUUGG
hsa_m5C_5136	chr4	76949086	76949087	-	ENST00000693132	C534	m5C	C23	5'-GGCGCGCGGGCAGACAGGGGAUCCCAUUGG-3'	.((......)).....(((...)))..... ( -4.50)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr4:76949080-76949109	NA	NA	ENSG00000289586	GGCGCGCGGGCAGACAGGGGAUCCCAUUGG
hsa_m5C_5137	chr4	76949085	76949086	-	ENST00000693132	C535	m5C	C24	5'-GGCGCGCGGGCAGACAGGGGAUCCCAUUGG-3'	.((......)).....(((...)))..... ( -4.50)	loop	lncRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	30	chr4:76949080-76949109	NA	NA	ENSG00000289586	GGCGCGCGGGCAGACAGGGGAUCCCAUUGG
hsa_m5C_5138	chr3	11358572	11358573	+	ENST00000693202	C1839	m5C	C16	5'-GGACACCAGGGAGAGCCGGUGG-3'	...((((.((.....)))))). ( -7.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	22	chr3:11358558-11358579	ATG7	HGNC:16935	ENSG00000197548	GGACACCAGGGAGAGCCGGUGG
hsa_m5C_5139	chr5	177351614	177351615	-	ENST00000694905	C62	m5C	C5	5'-GGGGCUGGGGCCGGCGGUGCCUGGG-3'	((.((((.......)))).)).... ( -8.10)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr5:177351595-177351619	LMAN2	HGNC:16986	ENSG00000169223	GGGGCUGGGGCCGGCGGUGCCUGGG
hsa_m5C_5140	chr5	177351608	177351609	-	ENST00000694905	C68	m5C	C11	5'-GGGGCUGGGGCCGGCGGUGCCUGGG-3'	((.((((.......)))).)).... ( -8.10)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr5:177351595-177351619	LMAN2	HGNC:16986	ENSG00000169223	GGGGCUGGGGCCGGCGGUGCCUGGG
hsa_m5C_5141	chr5	177351607	177351608	-	ENST00000694905	C69	m5C	C12	5'-GGGGCUGGGGCCGGCGGUGCCUGGG-3'	((.((((.......)))).)).... ( -8.10)	loop	mRNA	T24;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038	25	chr5:177351595-177351619	LMAN2	HGNC:16986	ENSG00000169223	GGGGCUGGGGCCGGCGGUGCCUGGG
hsa_m5C_5142	chr21	46411550	46411551	+	ENST00000695558	C5584	m5C	C3	5'-GGCGCAGAGGAGGCUGCGG-3'	..(((((......))))). ( -7.30)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;HeLa,siControl;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	19	chr21:46411549-46411567	PCNT	HGNC:16068	ENSG00000160299	GGCGCAGAGGAGGCUGCGG
hsa_m5C_5143	chr21	46349696	46349697	+	ENST00000695558	C1294	m5C	C22	5'-GGCUGAAC^GGGCCCUUAGGAACCUGG-3'	((((.....))))............. ( -5.00)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	26	chr21:46349179-46349186;46349684-46349701	PCNT	HGNC:16068	ENSG00000160299	GGCUGAACGGGCCCUUAGGAACCUGG
hsa_m5C_5144	chr18	8825450	8825451	+	ENST00000695636	C5126	m5C	C4	5'-GGUCCCGGACGAUGGGG-3'	...((((.....)))). ( -4.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	17	chr18:8825448-8825464	MTCL1	HGNC:29121	ENSG00000168502	GGUCCCGGACGAUGGGG
hsa_m5C_5145	chr18	8825451	8825452	+	ENST00000695636	C5127	m5C	C5	5'-GGUCCCGGACGAUGGGG-3'	...((((.....)))). ( -4.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	17	chr18:8825448-8825464	MTCL1	HGNC:29121	ENSG00000168502	GGUCCCGGACGAUGGGG
hsa_m5C_5146	chr18	8825452	8825453	+	ENST00000695636	C5128	m5C	C6	5'-GGUCCCGGACGAUGGGG-3'	...((((.....)))). ( -4.80)	loop	mRNA	T24;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	17	chr18:8825448-8825464	MTCL1	HGNC:29121	ENSG00000168502	GGUCCCGGACGAUGGGG
hsa_m5C_5147	chr19	2413776	2413777	+	ENST00000696167	C1453	m5C	C8	5'-GGGGAAUCGGGUGUGCGGAAGCCCGG-3'	.......(((((........))))). ( -8.40)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	26	chr19:2413770-2413795	TMPRSS9	HGNC:30079	ENSG00000178297	GGGGAAUCGGGUGUGCGGAAGCCCGG
hsa_m5C_5148	chrX	154531891	154531892	-	ENST00000696430	C1923	m5C	C4	5'-GGCCCCGGGCUCUGGCCACCCUGG-3'	((((.........))))....... ( -6.10)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	24	chrX:154531872-154531895	G6PD	HGNC:4057	ENSG00000160211	GGCCCCGGGCUCUGGCCACCCUGG
hsa_m5C_5149	chr3	128480738	128480739	-	ENST00000696466	C2486	m5C	C9	5'-GGAGGGGACGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	11	chr3:128480737-128480747	GATA2	HGNC:4171	ENSG00000179348	GGAGGGGACGG
hsa_m5C_5150	chr15	89652610	89652611	-	ENST00000696512	C507	m5C	C9	5'-GGGGGAGGCCAGUGUGG-3'	((......))....... ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	17	chr15:89652603-89652619	KIF7	HGNC:30497	ENSG00000166813	GGGGGAGGCCAGUGUGG
hsa_m5C_5151	chr15	89652609	89652610	-	ENST00000696512	C508	m5C	C10	5'-GGGGGAGGCCAGUGUGG-3'	((......))....... ( -1.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	17	chr15:89652603-89652619	KIF7	HGNC:30497	ENSG00000166813	GGGGGAGGCCAGUGUGG
hsa_m5C_5152	chr1	35192338	35192339	-	ENST00000696553	C1108	m5C	C3	5'-GGCGGCGGGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	10	chr1:35192332-35192341	SFPQ	HGNC:10774	ENSG00000116560	GGCGGCGGGG
hsa_m5C_5153	chr1	35192259	35192260	-	ENST00000696553	C1187	m5C	C7	5'-GGCGGGCCCGGCGG-3'	.((.......)).. ( -1.40)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	14	chr1:35192253-35192266	SFPQ	HGNC:10774	ENSG00000116560	GGCGGGCCCGGCGG
hsa_m5C_5154	chr1	35192258	35192259	-	ENST00000696553	C1188	m5C	C8	5'-GGCGGGCCCGGCGG-3'	.((.......)).. ( -1.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr1:35192253-35192266	SFPQ	HGNC:10774	ENSG00000116560	GGCGGGCCCGGCGG
hsa_m5C_5155	chr1	35192257	35192258	-	ENST00000696553	C1189	m5C	C9	5'-GGCGGGCCCGGCGG-3'	.((.......)).. ( -1.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	14	chr1:35192253-35192266	SFPQ	HGNC:10774	ENSG00000116560	GGCGGGCCCGGCGG
hsa_m5C_5156	chr1	35192470	35192471	-	ENST00000696553	C976	m5C	C4	5'-GGGCCCGGGUCCAGGGCCUAAGCAGGG-3'	((((((.......))))))........ (-11.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	27	chr1:35192448-35192474	SFPQ	HGNC:10774	ENSG00000116560	GGGCCCGGGUCCAGGGCCUAAGCAGGG
hsa_m5C_5157	chr1	35192469	35192470	-	ENST00000696553	C977	m5C	C5	5'-GGGCCCGGGUCCAGGGCCUAAGCAGGG-3'	((((((.......))))))........ (-11.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;30872485	27	chr1:35192448-35192474	SFPQ	HGNC:10774	ENSG00000116560	GGGCCCGGGUCCAGGGCCUAAGCAGGG
hsa_m5C_5158	chr1	35192468	35192469	-	ENST00000696553	C978	m5C	C6	5'-GGGCCCGGGUCCAGGGCCUAAGCAGGG-3'	((((((.......))))))........ (-11.90)	loop	mRNA	HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr1:35192448-35192474	SFPQ	HGNC:10774	ENSG00000116560	GGGCCCGGGUCCAGGGCCUAAGCAGGG
hsa_m5C_5159	chr1	35192462	35192463	-	ENST00000696553	C984	m5C	C12	5'-GGGCCCGGGUCCAGGGCCUAAGCAGGG-3'	((((((.......))))))........ (-11.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr1:35192448-35192474	SFPQ	HGNC:10774	ENSG00000116560	GGGCCCGGGUCCAGGGCCUAAGCAGGG
hsa_m5C_5160	chr1	85200659	85200660	-	ENST00000696556	C1065	m5C	C12	5'-GGUGCGGCGCGCACCGGGACUGGG-3'	((((((...))))))......... ( -9.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	24	chr1:85200648-85200671	SYDE2	HGNC:25841	ENSG00000097096	GGUGCGGCGCGCACCGGGACUGGG
hsa_m5C_5161	chrX	65736873	65736874	+	ENST00000697138	C1381	m5C	C8	5'-GGAGGAGCUGAUGGAGAGG-3'	NA	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	30526041	19	chrX:65736867-65736885	MSN	HGNC:7373	ENSG00000147065	GGAGGAGCUGAUGGAGAGG
hsa_m5C_5162	chr16	673003	673004	+	ENST00000697194	C1707	m5C	C14	5'-GGUGUCGCGGUGUCUGGCCCAUCACCGG-3'	((((....(((.....)))...)))).. ( -8.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	28	chr16:672991-673018	RHOT2	HGNC:21169	ENSG00000140983	GGUGUCGCGGUGUCUGGCCCAUCACCGG
hsa_m5C_5163	chr5	176115913	176115914	+	ENST00000697514	C3809	m5C	C6	5'-GGAGGCUGAGGCAGG-3'	....((....))... ( -0.20)	loop	lncRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	15	chr5:176115909-176115923	NA	NA	ENSG00000289731	GGAGGCUGAGGCAGG
hsa_m5C_5164	chr10	70564479	70564480	+	ENST00000697548	C1028	m5C	C10	5'-GGAGAAGGCCGACUCCUGGCAGAGG-3'	((((........))))......... ( -4.60)	loop	mRNA	spleen	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	25	chr10:70564471-70564495	PALD1	HGNC:23530	ENSG00000107719	GGAGAAGGCCGACUCCUGGCAGAGG
hsa_m5C_5165	chr21	31266435	31266436	-	ENST00000698169	C1070	m5C	C11	5'-GGCGGGAGGACAGCCUGG-3'	(((.........)))... ( -3.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	18	chr21:31266429-31266446	TIAM1	HGNC:11805	ENSG00000156299	GGCGGGAGGACAGCCUGG
hsa_m5C_5166	chr17	42219753	42219754	-	ENST00000698779	C799	m5C	C16	5'-GGUGUCUCUGGAGGCCUGG-3'	(((.((....)).)))... ( -5.50)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr17:42219751-42219769	STAT5B	HGNC:11367	ENSG00000173757	GGUGUCUCUGGAGGCCUGG
hsa_m5C_5167	chr11	47980763	47980764	+	ENST00000698881	C340	m5C	C8	5'-GGGAAGCCCGGGGCGGGCGGAGCGGG-3'	.....(((((...)))))........ ( -8.40)	loop	mRNA	HeLa,siControl	RNA-BisSeq:(High)	pqsfinder&qgrs;G4hunter score>=1.2:(Medium)	RMVar database	28418038	26	chr11:47980757-47980782	PTPRJ	HGNC:9673	ENSG00000149177	GGGAAGCCCGGGGCGGGCGGAGCGGG
hsa_m5C_5168	chr11	47980764	47980765	+	ENST00000698881	C341	m5C	C9	5'-GGGAAGCCCGGGGCGGGCGGAGCGGG-3'	.....(((((...)))))........ ( -8.40)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4hunter score>=1.2:(Medium)	RMBase database	28418038	26	chr11:47980757-47980782	PTPRJ	HGNC:9673	ENSG00000149177	GGGAAGCCCGGGGCGGGCGGAGCGGG
hsa_m5C_5169	chr20	6115948	6115949	-	ENST00000699095	C3766	m5C	C17	5'-GGACAAAUAUGGGGUCCAGG-3'	((((.........))))... ( -4.60)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	20	chr20:6115946-6115965	FERMT1	HGNC:15889	ENSG00000101311	GGACAAAUAUGGGGUCCAGG
hsa_m5C_5170	chr19	17786576	17786577	+	ENST00000699212	C2836	m5C	C5	5'-G^GAACCUGGAGGAGAAGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr19:17784924-17784924;17786574-17786592	FCHO1	HGNC:29002	ENSG00000130475	GGAACCUGGAGGAGAAGCGG
hsa_m5C_5171	chr19	17786589	17786590	+	ENST00000699212	C2849	m5C	C18	5'-G^GAACCUGGAGGAGAAGCGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	20	chr19:17784924-17784924;17786574-17786592	FCHO1	HGNC:29002	ENSG00000130475	GGAACCUGGAGGAGAAGCGG
hsa_m5C_5172	chrX	19887578	19887579	-	ENST00000699668	C13	m5C	C7	5'-GGGGAGCAGGAAACCCGGCGCAGCCGG-3'	..............(((((...))))) ( -7.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chrX:19887559-19887585	SH3KBP1	HGNC:13867	ENSG00000147010	GGGGAGCAGGAAACCCGGCGCAGCCGG
hsa_m5C_5173	chr7	5987170	5987171	-	ENST00000699818	C1814	m5C	C14	5'-GGGCUCGCAGGAACAUGUGGACUCUCAGG-3'	(((.(((((......))))).)))..... ( -6.90)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr7:5987156-5987184	PMS2	HGNC:9122	ENSG00000122512	GGGCUCGCAGGAACAUGUGGACUCUCAGG
hsa_m5C_5174	chr14	102909993	102909994	+	ENST00000699894	C6572	m5C	C30	5'-GGGUCAUUCCUUGUCAGCCCAAGGGAGGGCCGGG-3'	.((((.(((((((......))))))).))))... (-14.50)	loop	mRNA	frontal_cortex	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	34	chr14:102909965-102909998	TRAF3	HGNC:12033	ENSG00000131323	GGGUCAUUCCUUGUCAGCCCAAGGGAGGGCCGGG
hsa_m5C_5175	chr4	184628275	184628276	-	ENST00000700100	C2260	m5C	C20	5'-GGCAGAGCCAUGGACCACGCAGGAAGG-3'	(((...))).....((.....)).... ( -3.20)	loop	mRNA	293T;Muscle	UBS-seq:(High);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	31061524;38168991	27	chr4:184628269-184628295	CASP3	HGNC:1504	ENSG00000164305	GGCAGAGCCAUGGACCACGCAGGAAGG
hsa_m5C_5176	chr10	99611280	99611281	-	ENST00000700250	C777	m5C	C26	5'-GGGCAGUGUGGCAAAAUGAAGGGGCCGGGG-3'	........((((...........))))... ( -3.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	30	chr10:99611277-99611306	SLC25A28	HGNC:23472	ENSG00000155287	GGGCAGUGUGGCAAAAUGAAGGGGCCGGGG
hsa_m5C_5177	chr19	40378402	40378403	+	ENST00000700630	C2592	m5C	C38	5'-GGGGAGGGAUCAGCCCCCAAAGAAAUGGGGGUGCAUGCUGGG-3'	.....((.((..(((((((......)))))))..)).))... (-15.30)	bulge	mRNA	HeLa	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;31061524	42	chr19:40378366-40378407	PLD3	HGNC:17158	ENSG00000105223	GGGGAGGGAUCAGCCCCCAAAGAAAUGGGGGUGCAUGCUGGG
hsa_m5C_5178	chr19	40377814	40377815	+	ENST00000700630	C2104	m5C	C19	5'-GGUCCCCGCGGAUGAGGCCCAGG-3'	((.((.((....)).)).))... ( -3.40)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr19:40377797-40377819	PLD3	HGNC:17158	ENSG00000105223	GGUCCCCGCGGAUGAGGCCCAGG
hsa_m5C_5179	chr19	40377815	40377816	+	ENST00000700630	C2105	m5C	C20	5'-GGUCCCCGCGGAUGAGGCCCAGG-3'	((.((.((....)).)).))... ( -3.40)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	23	chr19:40377797-40377819	PLD3	HGNC:17158	ENSG00000105223	GGUCCCCGCGGAUGAGGCCCAGG
hsa_m5C_5180	chr17	7910884	7910885	+	ENST00000700753	C6027	m5C	C5	5'-GGUACGGGGCGG-3'	NA	loop	mRNA	HeLa,With in vitro transcribed m5C spike-ins;HeLa,With in vitro transcribed non-m5C spike-ins;293T;HeLa,siControl;HeLa,rip antibody: ALYREF;frontal_cortex,heart,293T,lung,spleen,Testis,HeLa,T24;HeLa	UBS-seq:(High);RNA-BisSeq:(High),m5C-RIP-seq:(Medium);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;38168991;m6A-Atlas database;RMVar database	30872485;28418038;31061524;38168991	12	chr17:7910881-7910892	CHD3	HGNC:1918	ENSG00000170004	GGUACGGGGCGG
hsa_m5C_5181	chr19	44931244	44931245	+	ENST00000701959	C491	m5C	C7	5'-GGGAGGCUGAGGCGG-3'	.....((....)).. ( -0.40)	loop	lncRNA	liver	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	NA	15	chr19:44931239-44931253	NA	NA	ENSG00000291128	GGGAGGCUGAGGCGG
hsa_m5C_5182	chr9	136547926	136547927	+	ENST00000701978	C326	m5C	C12	5'-GGAUGGUGCGGCCGG-3'	....(((...))).. ( -1.40)	loop	lncRNA	HeLa	UBS-seq:(High);RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;38168991	28418038;31061524;38168991	15	chr9:136547916-136547930	NALT1	HGNC:51192	ENSG00000237886	GGAUGGUGCGGCCGG
hsa_m5C_5183	chr7	72829777	72829778	+	ENST00000702913	C314	m5C	C12	5'-GGCUGGCGGAGCGG-3'	.(((.....))).. ( -2.90)	loop	lncRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	14	chr7:72829767-72829780	NA	NA	ENSG00000291152	GGCUGGCGGAGCGG
hsa_m5C_5184	chr8	38413331	38413332	-	ENST00000703405	C3707	m5C	C7	5'-GGAGGGCAGGGAGUGG-3'	NA	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	16	chr8:38413323-38413338	FGFR1	HGNC:3688	ENSG00000077782	GGAGGGCAGGGAGUGG
hsa_m5C_5185	chr8	38468316	38468317	-	ENST00000703405	C518	m5C	C27	5'-GGCACGCCGCGGCGCCGGGGCCUCCGCAGG-3'	((...(((.((....)).)))..))..... ( -9.60)	loop	mRNA	HeLa	m5C-RIP-seq:(Medium);UBS-seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;38168991	38168991	30	chr8:38468314-38468343	FGFR1	HGNC:3688	ENSG00000077782	GGCACGCCGCGGCGCCGGGGCCUCCGCAGG
hsa_m5C_5186	chr8	144082632	144082633	+	ENST00000703648	C38	m5C	C18	5'-GGGACCGGAAGUGCGGGCGAGCGCGGGUCCCCGGG-3'	((((((....((((......)))).)))))).... (-15.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	35	chr8:144082616-144082650	GPAA1	HGNC:4446	ENSG00000197858	GGGACCGGAAGUGCGGGCGAGCGCGGGUCCCCGGG
hsa_m5C_5187	chr8	144082638	144082639	+	ENST00000703648	C44	m5C	C24	5'-GGGACCGGAAGUGCGGGCGAGCGCGGGUCCCCGGG-3'	((((((....((((......)))).)))))).... (-15.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	35	chr8:144082616-144082650	GPAA1	HGNC:4446	ENSG00000197858	GGGACCGGAAGUGCGGGCGAGCGCGGGUCCCCGGG
hsa_m5C_5188	chr8	144084492	144084493	+	ENST00000703648	C1029	m5C	C16	5'-GGUUCUGCGGCAGGCCUCCGG-3'	(((.(((...))))))..... ( -3.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	21	chr8:144084478-144084498	GPAA1	HGNC:4446	ENSG00000197858	GGUUCUGCGGCAGGCCUCCGG
hsa_m5C_5189	chr17	42494442	42494443	+	ENST00000703898	C1367	m5C	C20	5'-GGAUGGUACUGAGGGAGAGCCGG-3'	....(((.((.....)).))).. ( -3.60)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	23	chr17:42494424-42494446	ATP6V0A1	HGNC:865	ENSG00000033627	GGAUGGUACUGAGGGAGAGCCGG
hsa_m5C_5190	chr17	42517698	42517699	+	ENST00000703898	C3431	m5C	C13	5'-GGCCCAGGACUGCAGGAGG-3'	.((........))...... ( -0.10)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	19	chr17:42517687-42517705	ATP6V0A1	HGNC:865	ENSG00000033627	GGCCCAGGACUGCAGGAGG
hsa_m5C_5191	chr17	42519996	42519997	+	ENST00000703898	C5729	m5C	C3	5'-GGCUUGGAGGGAGG-3'	..(((.....))). ( -0.20)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	14	chr17:42519995-42520008	ATP6V0A1	HGNC:865	ENSG00000033627	GGCUUGGAGGGAGG
hsa_m5C_5192	chr17	42519098	42519099	+	ENST00000703898	C4831	m5C	C9	5'-GGGAGGGGCAGUAUUGGGCAGUAUGUCAGGG-3'	......((((.((((....)))))))).... ( -2.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	31	chr17:42519091-42519121	ATP6V0A1	HGNC:865	ENSG00000033627	GGGAGGGGCAGUAUUGGGCAGUAUGUCAGGG
hsa_m5C_5193	chr7	47368734	47368735	-	ENST00000705350	C2488	m5C	C6	5'-GGGACCAGCAGUAGGGUGGCUGUCCAGAGGG-3'	.((((.(((.........)))))))...... ( -8.10)	loop	mRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	31	chr7:47368710-47368740	TNS3	HGNC:21616	ENSG00000136205	GGGACCAGCAGUAGGGUGGCUGUCCAGAGGG
hsa_m5C_5194	chr1	24643207	24643208	+	ENST00000705663	C9	m5C	C9	5'-GGAGGGGGCGG-3'	NA	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31061524	11	chr1:24643200-24643210	SRRM1	HGNC:16638	ENSG00000133226	GGAGGGGGCGG
hsa_m5C_5195	chr6	31159596	31159597	+	ENST00000706779	C1094	m5C	C3	5'-GGCCCUGCGGCCCCAGCAGGAGCCUGG-3'	((((((((.......))))).)))... (-14.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr6:31159595-31159621	TCF19	HGNC:11629	ENSG00000137310	GGCCCUGCGGCCCCAGCAGGAGCCUGG
hsa_m5C_5196	chr6	31159601	31159602	+	ENST00000706779	C1099	m5C	C8	5'-GGCCCUGCGGCCCCAGCAGGAGCCUGG-3'	((((((((.......))))).)))... (-14.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	27	chr6:31159595-31159621	TCF19	HGNC:11629	ENSG00000137310	GGCCCUGCGGCCCCAGCAGGAGCCUGG
hsa_m5C_5197	chr6	29944182	29944183	+	ENST00000706904	C957	m5C	C16	5'-GGCCACCCUGAGGUGCUGGGCCCUGGG-3'	(((((((....)))....))))..... ( -7.60)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	27	chr6:29944168-29944194	HLA-A	HGNC:4931	ENSG00000206503	GGCCACCCUGAGGUGCUGGGCCCUGGG
hsa_m5C_5198	chr9	35732102	35732103	-	ENST00000706939	C93	m5C	C16	5'-GGGGCGGCGGGCCGGCGGGCGGGG-3'	..........(((....))).... ( -5.10)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	24	chr9:35732095-35732118	TLN1	HGNC:11845	ENSG00000137076	GGGGCGGCGGGCCGGCGGGCGGGG
hsa_m5C_5199	chr9	35732098	35732099	-	ENST00000706939	C97	m5C	C20	5'-GGGGCGGCGGGCCGGCGGGCGGGG-3'	..........(((....))).... ( -5.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	24	chr9:35732095-35732118	TLN1	HGNC:11845	ENSG00000137076	GGGGCGGCGGGCCGGCGGGCGGGG
hsa_m5C_5200	chr9	35704781	35704782	-	ENST00000706939	C5972	m5C	C12	5'-GGGUACAGGAGCUGGGCCAUGG-3'	.(((.(((...))).))).... ( -4.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	22	chr9:35704772-35704793	TLN1	HGNC:11845	ENSG00000137076	GGGUACAGGAGCUGGGCCAUGG
hsa_m5C_5201	chr9	35704776	35704777	-	ENST00000706939	C5977	m5C	C17	5'-GGGUACAGGAGCUGGGCCAUGG-3'	.(((.(((...))).))).... ( -4.80)	loop	mRNA	HEK293	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	30526041	22	chr9:35704772-35704793	TLN1	HGNC:11845	ENSG00000137076	GGGUACAGGAGCUGGGCCAUGG
hsa_m5C_5202	chr14	103334327	103334328	+	ENST00000706947	C92	m5C	C10	5'-GGCCGCUGGCUGGCGGGGAAGG-3'	..(((((....)))))...... ( -7.30)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	22	chr14:103334319-103334340	NA	NA	ENSG00000291313	GGCCGCUGGCUGGCGGGGAAGG
hsa_m5C_5203	chr20	63407056	63407057	-	ENST00000706989	C2452	m5C	C7	5'-GGGGACCACGGCUCCCUGG-3'	(((((.......))))).. ( -5.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	19	chr20:63407045-63407063	KCNQ2	HGNC:6296	ENSG00000075043	GGGGACCACGGCUCCCUGG
hsa_m5C_5204	chr10	71817046	71817047	-	ENST00000394936	C1999	m5C	C23	5'-GGGCACUGGUGGGCCUGGGCUUCUGAGG-3'	((((........))))............ ( -4.90)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	38168991	38168991	28	chr10:71817042-71817069	PSAP	HGNC:9498	ENSG00000197746	GGGCACUGGUGGGCCUGGGCUUCUGAGG
hsa_m5C_5205	chr10	74107253	74107254	+	ENST00000372755	C2553	m5C	C6	5'-GGACUCAGGAUAUCGGAUCCUGG-3'	.....((((((.....)))))). ( -7.30)	loop	mRNA	293T;HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	23	chr10:74107249-74107271	VCL	HGNC:12665	ENSG00000035403	GGACUCAGGAUAUCGGAUCCUGG
hsa_m5C_5206	chr11	111602582	111602583	+	ENST00000304987	C135	m5C	C18	5'-GGUCAUGGCGGAUGGCCCGAGG-3'	((((((.....))))))..... ( -7.10)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	22	chr11:111602566-111602587	SIK2	HGNC:21680	ENSG00000170145	GGUCAUGGCGGAUGGCCCGAGG
hsa_m5C_5207	chr1	155058378	155058379	+	ENST00000449910	C1956	m5C	C15	5'-GGGUGCACCUGGACCUGGGCAGUGAUGUGG-3'	...(((.((.......)))))......... ( -4.70)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	30	chr1:155058365-155058394	ADAM15	HGNC:193	ENSG00000143537	GGGUGCACCUGGACCUGGGCAGUGAUGUGG
hsa_m5C_5208	chr11	61343917	61343918	+	ENST00000394900	C1256	m5C	C10	5'-GGGCGGAAGCGGAGCCGG-3'	.(((.........))).. ( -4.20)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	18	chr11:61343909-61343926	TKFC	HGNC:24552	ENSG00000149476	GGGCGGAAGCGGAGCCGG
hsa_m5C_5209	chr11	65172685	65172686	+	ENST00000377185	C522	m5C	C7	5'-GGAG^GUCAUGGCAAAGG-3'	NA	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	17	chr11:65172602-65172605;65172684-65172696	SPDYC	HGNC:32681	ENSG00000204710	GGAGGUCAUGGCAAAGG
hsa_m5C_5210	chr11	66276687	66276688	+	ENST00000311481	C1097	m5C	C7	5'-GGGAUCCAGGACCUGGGAUCCAGGGCCCUGGG-3'	.....(((((.(((((...)))))..))))). (-16.60)	loop	mRNA	293T;HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	32	chr11:66276682-66276713	RAB1B	HGNC:18370	ENSG00000174903	GGGAUCCAGGACCUGGGAUCCAGGGCCCUGGG
hsa_m5C_5211	chr11	66277154	66277155	+	ENST00000311481	C1564	m5C	C18	5'-GGGAAUGUGGGUUCCAUCCAGGAUUGGGGG-3'	.(((((....))))).((((....)))).. ( -6.80)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	38168991	38168991	30	chr11:66277138-66277167	RAB1B	HGNC:18370	ENSG00000174903	GGGAAUGUGGGUUCCAUCCAGGAUUGGGGG
hsa_m5C_5212	chr12	105330905	105330906	+	ENST00000612117	C271	m5C	C13	5'-GGGCUGCGGGAACUCCACCGCCACCAGCGCGGGCGCGGG-3'	((...((((........))))..))..(((....))).. (-12.80)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	39	chr12:105330894-105330932	C12orf75	HGNC:35164	ENSG00000235162	GGGCUGCGGGAACUCCACCGCCACCAGCGCGGGCGCGGG
hsa_m5C_5213	chr1	228097974	228097975	+	ENST00000272102	C603	m5C	C15	5'-GGCUCUAUGAAGGACUGGACUGG-3'	((.((((........)))))).. ( -1.00)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	23	chr1:228097961-228097983	ARF1	HGNC:652	ENSG00000143761	GGCUCUAUGAAGGACUGGACUGG
hsa_m5C_5214	chr13	48976835	48976836	+	ENST00000541916	C228	m5C	C12	5'-GGAGGUGGACUCGAGG-3'	.(((.....))).... ( -2.90)	loop	mRNA	293T;HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	16	chr13:48976825-48976840	FNDC3A	HGNC:20296	ENSG00000102531	GGAGGUGGACUCGAGG
hsa_m5C_5215	chr13	94601986	94601987	+	ENST00000376958	C131	m5C	C17	5'-GGUGGCCGCAGGGCAGCCAGG-3'	(((.(((....))).)))... ( -9.80)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	21	chr13:94601971-94601991	GPR180	HGNC:28899	ENSG00000152749	GGUGGCCGCAGGGCAGCCAGG
hsa_m5C_5216	chr13	96090603	96090604	+	ENST00000376705	C498	m5C	C10	5'-GGGCGCACCCGGGAGCGCAGGG-3'	..((((........)))).... ( -6.60)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	22	chr13:96090595-96090616	HS6ST3	HGNC:19134	ENSG00000185352	GGGCGCACCCGGGAGCGCAGGG
hsa_m5C_5217	chr14	100279889	100279890	+	ENST00000262238	C3636	m5C	C7	5'-GGCCUGCAGGAGCCAGGCUCCUGUGUGG-3'	..(((((((((((...))))))))).)) (-14.00)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	28	chr14:100279884-100279911	YY1	HGNC:12856	ENSG00000100811	GGCCUGCAGGAGCCAGGCUCCUGUGUGG
hsa_m5C_5218	chr14	100334948	100334949	-	ENST00000355338	C1961	m5C	C5	5'-GGCCCGGCGCAAGGAGG-3'	...((.......))... ( -1.10)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	17	chr14:100334937-100334953	WARS1	HGNC:12729	ENSG00000140105	GGCCCGGCGCAAGGAGG
hsa_m5C_5219	chr14	104978270	104978271	-	ENST00000333244	C104	m5C	C28	5'-GGAGCCGGGACCAGCGACUGGACGCGACGG-3'	.....((...((((...))))...)).... ( -5.00)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	30	chr14:104978269-104978298	AHNAK2	HGNC:20125	ENSG00000185567	GGAGCCGGGACCAGCGACUGGACGCGACGG
hsa_m5C_5220	chr14	105209632	105209633	-	ENST00000547530	C3324	m5C	C15	5'-GGAGGGAGGGCAGACGG-3'	NA	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	38168991	38168991	17	chr14:105209631-105209647	BRF1	HGNC:11551	ENSG00000185024	GGAGGGAGGGCAGACGG
hsa_m5C_5221	chr14	22981607	22981608	-	ENST00000262713	C944	m5C	C7	5'-GGCCCGCGGGGUUCGG-3'	.((((...)))).... ( -3.90)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	16	chr14:22981599-22981614	AJUBA	HGNC:20250	ENSG00000129474	GGCCCGCGGGGUUCGG
hsa_m5C_5222	chr15	43133879	43133880	+	ENST00000260403	C295	m5C	C10	5'-GGAGCACUACGGCCUGGCGG-3'	((.((......))))..... ( -1.20)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	20	chr15:43133871-43133890	TMEM62	HGNC:26269	ENSG00000137842	GGAGCACUACGGCCUGGCGG
hsa_m5C_5223	chr15	59117356	59117357	+	ENST00000621385	C964	m5C	C11	5'-GGUUCUAGGACAAGGAAAAUGG-3'	..((((......))))...... ( -0.30)	loop	mRNA	293T;HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	22	chr15:59117347-59117368	CCNB2	HGNC:1580	ENSG00000157456	GGUUCUAGGACAAGGAAAAUGG
hsa_m5C_5224	chr15	90087114	90087115	-	ENST00000330062	C1042	m5C	C5	5'-GGCCCAGG^GCUUUGGCUCCCUUGG-3'	...((((((.........)))))) ( -6.00)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	24	chr15:90085372-90085387;90087112-90087119	IDH2	HGNC:5383	ENSG00000182054	GGCCCAGGGCUUUGGCUCCCUUGG
hsa_m5C_5225	chr16	4474431	4474432	-	ENST00000574733	C431	m5C	C6	5'-GGCCGCGGCGAGGAGG-3'	.((....))....... ( -1.40)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	16	chr16:4474422-4474437	NMRAL1	HGNC:24987	ENSG00000153406	GGCCGCGGCGAGGAGG
hsa_m5C_5226	chr16	547029	547030	+	ENST00000219611	C699	m5C	C15	5'-GGCAAGGAGGCCUGCGAGG-3'	(((......)))....... ( -3.90)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	19	chr16:547016-547034	CAPN15	HGNC:11182	ENSG00000103326	GGCAAGGAGGCCUGCGAGG
hsa_m5C_5227	chr16	548039	548040	+	ENST00000219611	C1709	m5C	C14	5'-GGACGGGUGUCCUCGGCCCAGAAGG-3'	....((((.......))))...... ( -5.70)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	25	chr16:548027-548051	CAPN15	HGNC:11182	ENSG00000103326	GGACGGGUGUCCUCGGCCCAGAAGG
hsa_m5C_5228	chr16	717187	717188	+	ENST00000568223	C855	m5C	C12	5'-GGCGGGGCGAUCCGGGGACCAGG-3'	..((((....))))......... ( -4.00)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	38168991	38168991	23	chr16:717177-717199	METRN	HGNC:14151	ENSG00000103260	GGCGGGGCGAUCCGGGGACCAGG
hsa_m5C_5229	chr16	74448098	74448099	-	ENST00000422840	C8628	m5C	C21	5'-GGUGAGGUCAUUGUGGGGACCAGG-3'	.....((((........))))... ( -5.30)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	38168991	38168991	24	chr16:74448096-74448119	GLG1	HGNC:4316	ENSG00000090863	GGUGAGGUCAUUGUGGGGACCAGG
hsa_m5C_5230	chr17	28634068	28634069	-	ENST00000528896	C3190	m5C	C20	5'-GG^UUCGGAUCAGGGACUAUCCACGG-3'	(((((.......)))))........ ( -3.70)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	25	chr17:28634064-28634086;28634517-28634518	BLTP2	HGNC:28960	ENSG00000007202	GGUUCGGAUCAGGGACUAUCCACGG
hsa_m5C_5231	chr17	28717362	28717363	-	ENST00000395245	C506	m5C	C10	5'-GGGACACCCCGGCCGCGGGUGAUCGUCGG-3'	(((....)))..((((((....))).))) ( -9.00)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	29	chr17:28717344-28717372	RAB34	HGNC:16519	ENSG00000109113	GGGACACCCCGGCCGCGGGUGAUCGUCGG
hsa_m5C_5232	chr17	38402356	38402357	+	ENST00000612932	C5022	m5C	C13	5'-GGAGCAGAGGAGCAGGUGUGG-3'	...((......))........ ( -1.00)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	21	chr17:38402345-38402365	SOCS7	HGNC:29846	ENSG00000274211	GGAGCAGAGGAGCAGGUGUGG
hsa_m5C_5233	chr17	40443866	40443867	+	ENST00000269593	C418	m5C	C7	5'-GGGCUGCGAGGAGCUGGUGCGAGAGCCGG-3'	.((((......))))(((......))).. ( -6.80)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	29	chr17:40443861-40443889	IGFBP4	HGNC:5473	ENSG00000141753	GGGCUGCGAGGAGCUGGUGCGAGAGCCGG
hsa_m5C_5234	chr17	44876060	44876061	-	ENST00000426333	C823	m5C	C5	5'-GGUGCAGGAGAGGCUGG-3'	....(((......))). ( -2.40)	loop	mRNA	293T;HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	17	chr17:44876049-44876065	EFTUD2	HGNC:30858	ENSG00000108883	GGUGCAGGAGAGGCUGG
hsa_m5C_5235	chr17	50381887	50381888	-	ENST00000225972	C2230	m5C	C15	5'-GGCAUAAAUGGAAACAGGAUAUGAAGG-3'	..((((..((....))...)))).... ( -1.90)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	27	chr17:50381876-50381902	LRRC59	HGNC:28817	ENSG00000108829	GGCAUAAAUGGAAACAGGAUAUGAAGG
hsa_m5C_5236	chr17	7243941	7243942	-	ENST00000574322	C1416	m5C	C6	5'-GGACACAGGCGGAAGCCUAGG-3'	......((((....))))... ( -5.80)	loop	mRNA	293T;HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	21	chr17:7243927-7243947	CTDNEP1	HGNC:19085	ENSG00000175826	GGACACAGGCGGAAGCCUAGG
hsa_m5C_5237	chr17	75835512	75835513	-	ENST00000207549	C1811	m5C	C17	5'-GGAUGGAGUCCUGGCCCUGG-3'	((((...))))......... ( -2.40)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	20	chr17:75835510-75835529	UNC13D	HGNC:23147	ENSG00000092929	GGAUGGAGUCCUGGCCCUGG
hsa_m5C_5238	chr17	76737186	76737187	-	ENST00000392485	C147	m5C	C20	5'-GGAAGCCGGCGCCAGUUCGCGGGGCUCCGG-3'	(((.(((..(((......))).)))))).. (-12.80)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	30	chr17:76737177-76737206	SRSF2	HGNC:10783	ENSG00000161547	GGAAGCCGGCGCCAGUUCGCGGGGCUCCGG
hsa_m5C_5239	chr17	81251513	81251514	-	ENST00000374759	C2430	m5C	C27	5'-GGGACGUGGAGCGAGCGGGUGGAAACCAG-3'	....(((.......)))(((....))).. ( -4.20)	bulge	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	29	chr17:81251512-81251540	SLC38A10	HGNC:28237	ENSG00000157637	GGGACGUGGAGCGAGCGGGUGGAAACCAG
hsa_m5C_5240	chr17	81843471	81843472	-	ENST00000681020	C3169	m5C	C17	5'-GGUAAAUGGAGACUUCCGGAUCCUGUCAGG-3'	((....((((....))))...))....... ( -4.70)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	30	chr17:81843459-81843488	P4HB	HGNC:8548	ENSG00000185624	GGUAAAUGGAGACUUCCGGAUCCUGUCAGG
hsa_m5C_5241	chr17	9890795	9890796	+	ENST00000262441	C2893	m5C	C16	5'-GGAGUUUGGCUGGAUCUGG-3'	NA	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	19	chr17:9890781-9890799	GLP2R	HGNC:4325	ENSG00000065325	GGAGUUUGGCUGGAUCUGG
hsa_m5C_5242	chr19	14463965	14463966	+	ENST00000242783	C1850	m5C	C20	5'-GGAUCCGAGGCCCGGACCACGG-3'	((.((((.....)))))).... ( -7.30)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	22	chr19:14463947-14463968	PKN1	HGNC:9405	ENSG00000123143	GGAUCCGAGGCCCGGACCACGG
hsa_m5C_5243	chr19	18592218	18592219	+	ENST00000358607	C649	m5C	C26	5'-GGGAUGCGCCGAGGGAGAUGGGAAACGGG-3'	((......))................... ( -1.80)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	38168991	38168991	29	chr19:18592194-18592222	REX1BD	HGNC:26098	ENSG00000006015	GGGAUGCGCCGAGGGAGAUGGGAAACGGG
hsa_m5C_5244	chr19	21120294	21120295	+	ENST00000456283	C3953	m5C	C4	5'-GGCCUCCAAAGGUGCUGGGAUUACACAGG-3'	.((((....)))).(((........))). ( -5.40)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	29	chr19:21120292-21120320	ZNF714	HGNC:27124	ENSG00000160352	GGCCUCCAAAGGUGCUGGGAUUACACAGG
hsa_m5C_5245	chr19	3977274	3977275	-	ENST00000309311	C2406	m5C	C8	5'-GGAGUCCCAGGUGGCCGG-3'	((....)).......... ( -0.90)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	18	chr19:3977265-3977282	EEF2	HGNC:3214	ENSG00000167658	GGAGUCCCAGGUGGCCGG
hsa_m5C_5246	chr19	40378203	40378204	+	ENST00000700630	C2393	m5C	C17	5'-GGCAGGCCAAGGCCUGCUGG-3'	(((((((....))))))).. (-13.30)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	20	chr19:40378188-40378207	PLD3	HGNC:17158	ENSG00000105223	GGCAGGCCAAGGCCUGCUGG
hsa_m5C_5247	chr19	41306519	41306520	+	ENST00000392006	C2658	m5C	C15	5'-GGGAACUACGACUACGGGAGCUACUCCGGGAACACACAGGG-3'	................((((...)))).............. ( -4.00)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	41	chr19:41306506-41306546	HNRNPUL1	HGNC:17011	ENSG00000105323	GGGAACUACGACUACGGGAGCUACUCCGGGAACACACAGGG
hsa_m5C_5248	chr19	4657854	4657855	-	ENST00000262947	C680	m5C	C9	5'-GGGGCUUGCAGGGUGGCUGAAGCCCUGGGGCAGAGAACAGAGGG-3'	(((((((.(((.....)))))))))).................. (-14.60)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	44	chr19:4657820-4657863	MYDGF	HGNC:16948	ENSG00000074842	GGGGCUUGCAGGGUGGCUGAAGCCCUGGGGCAGAGAACAGAGGG
hsa_m5C_5249	chr19	49713629	49713630	+	ENST00000392518	C2809	m5C	C13	5'-GGCAGCUGGCCUCUCCAAGGAAUAAGG-3'	(((.....)))................ ( -3.60)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	27	chr19:49713618-49713644	CPT1C	HGNC:18540	ENSG00000169169	GGCAGCUGGCCUCUCCAAGGAAUAAGG
hsa_m5C_5250	chr19	51104461	51104462	-	ENST00000421832	C192	m5C	C4	5'-GGCCGAGGUGCUGCACACGGUGCUCGCCGG-3'	(((.(((.(((((....))))))))))).. (-11.40)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	30	chr19:51104436-51104465	CTU1	HGNC:29590	ENSG00000142544	GGCCGAGGUGCUGCACACGGUGCUCGCCGG
hsa_m5C_5251	chr19	5719824	5719825	-	ENST00000360614	C322	m5C	C18	5'-GGGGGGCAGCGCGGGCGCCGGGG-3'	....(((.((....))))).... ( -7.10)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	38168991	38168991	23	chr19:5719820-5719842	LONP1	HGNC:9479	ENSG00000196365	GGGGGGCAGCGCGGGCGCCGGGG
hsa_m5C_5252	chr19	682901	682902	+	ENST00000166139	C2018	m5C	C23	5'-GGAGUCCUGGAGCCGGGUGUCCCAGUGG-3'	(((..((((....))))..)))...... ( -8.50)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	28	chr19:682880-682907	FSTL3	HGNC:3973	ENSG00000070404	GGAGUCCUGGAGCCGGGUGUCCCAGUGG
hsa_m5C_5253	chr20	33659957	33659958	-	ENST00000246190	C646	m5C	C6	5'-GGCAGCCGGCGGGCAGG-3'	....(((....)))... ( -5.00)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	17	chr20:33659947-33659963	NECAB3	HGNC:15851	ENSG00000125967	GGCAGCCGGCGGGCAGG
hsa_m5C_5254	chr20	43699873	43699874	+	ENST00000396863	C974	m5C	C26	5'-GGAACAGGAGCCCAUCGGUACAGAUCUGG-3'	....((((.(((....))).....)))). ( -2.80)	loop	mRNA	293T;HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	29	chr20:43699849-43699877	MYBL2	HGNC:7548	ENSG00000101057	GGAACAGGAGCCCAUCGGUACAGAUCUGG
hsa_m5C_5255	chr21	39313557	39313558	-	ENST00000342449	C75	m5C	C4	5'-GGUCAGGCCUCGGCGCGG-3'	......((....)).... ( -2.50)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	18	chr21:39313544-39313561	BRWD1	HGNC:12760	ENSG00000185658	GGUCAGGCCUCGGCGCGG
hsa_m5C_5256	chr2	1632858	1632859	-	ENST00000252804	C5845	m5C	C21	5'-GGCACACGAGGCACCAAGGUCCGGG-3'	......((.(((......))))).. ( -3.50)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	25	chr2:1632855-1632879	PXDN	HGNC:14966	ENSG00000130508	GGCACACGAGGCACCAAGGUCCGGG
hsa_m5C_5257	chr2	216660687	216660688	+	ENST00000233809	C678	m5C	C26	5'-GGGUAUGAAGGAGCUGGCCGUGUUCCGGG-3'	.........(((((.......)))))... ( -6.30)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	29	chr2:216660663-216660691	IGFBP2	HGNC:5471	ENSG00000115457	GGGUAUGAAGGAGCUGGCCGUGUUCCGGG
hsa_m5C_5258	chr2	219219435	219219436	-	ENST00000409618	C3971	m5C	C10	5'-GGAGCGGAGCAGGGUAGG-3'	NA	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	38168991	38168991	18	chr2:219219428-219219445	ATG9A	HGNC:22408	ENSG00000198925	GGAGCGGAGCAGGGUAGG
hsa_m5C_5259	chr22	19760951	19760952	+	ENST00000332710	C211	m5C	C18	5'-GGGCCGCGGGGGGCUUCCCGGG-3'	...((.(((((....))))))) ( -8.40)	loop	mRNA	293T;HeLa	UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	38168991	38168991	22	chr22:19760935-19760956	TBX1	HGNC:11592	ENSG00000184058	GGGCCGCGGGGGGCUUCCCGGG
hsa_m5C_5260	chr2	222642875	222642876	-	ENST00000281828	C263	m5C	C14	5'-GGAAGGAUUGGUUCGAGG-3'	NA	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	18	chr2:222642872-222642889	FARSB	HGNC:17800	ENSG00000116120	GGAAGGAUUGGUUCGAGG
hsa_m5C_5261	chr22	29308351	29308352	+	ENST00000618518	C1295	m5C	C5	5'-GGCCCGAGGUGUGGCCUUCCAGG-3'	((((........))))....... ( -6.50)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	23	chr22:29308348-29308370	GAS2L1	HGNC:16955	ENSG00000185340	GGCCCGAGGUGUGGCCUUCCAGG
hsa_m5C_5262	chr2	240467439	240467440	+	ENST00000264039	C3083	m5C	C16	5'-GGCUUCGGAGGGCCGCAGG-3'	(((((....)))))..... ( -5.60)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	19	chr2:240467425-240467443	GPC1	HGNC:4449	ENSG00000063660	GGCUUCGGAGGGCCGCAGG
hsa_m5C_5263	chr2	74365079	74365080	-	ENST00000361874	C3509	m5C	C15	5'-GGUCUCUGGCAUUGCUGGUG^G-3'	..((.(((((...))))).)) ( -3.20)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	21	chr2:74363427-74363427;74365075-74365094	DCTN1	HGNC:2711	ENSG00000204843	GGUCUCUGGCAUUGCUGGUGG
hsa_m5C_5264	chr3	197951167	197951168	+	ENST00000647248	C85	m5C	C15	5'-GGAAG^GCUGUGGUCCAAGG-3'	(((.........))).... ( -1.30)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	19	chr3:197950974-197950978;197951159-197951172	RPL35A	HGNC:10345	ENSG00000182899	GGAAGGCUGUGGUCCAAGG
hsa_m5C_5265	chr3	9690052	9690053	+	ENST00000296003	C1602	m5C	C9	5'-GGGGCUGGCGG-3'	NA	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	38168991	38168991	11	chr3:9690045-9690055	MTMR14	HGNC:26190	ENSG00000163719	GGGGCUGGCGG
hsa_m5C_5266	chr5	132557024	132557025	+	ENST00000378823	C49	m5C	C6	5'-GGUUGCGGGGUCGCAUUGUGG-3'	...((((....))))...... ( -4.10)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	38168991	38168991	21	chr5:132557020-132557040	RAD50	HGNC:9816	ENSG00000113522	GGUUGCGGGGUCGCAUUGUGG
hsa_m5C_5267	chr5	1341756	1341757	-	ENST00000320895	C625	m5C	C15	5'-GGCACGACGGGAAGCAGGUGCACCUGG-3'	.......((((..((....)).)))). ( -5.20)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	27	chr5:1341745-1341771	CLPTM1L	HGNC:24308	ENSG00000049656	GGCACGACGGGAAGCAGGUGCACCUGG
hsa_m5C_5268	chr5	179729408	179729409	+	ENST00000681168	C3349	m5C	C9	5'-GGGAGGGUCAGGCUGUGG-3'	NA	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	38168991	38168991	18	chr5:179729401-179729418	CANX	HGNC:1473	ENSG00000127022	GGGAGGGUCAGGCUGUGG
hsa_m5C_5269	chr5	179798255	179798256	-	ENST00000337755	C2464	m5C	C9	5'-GGGAGUGGCAGAGGGAGAGG-3'	NA	bulge	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	20	chr5:179798245-179798264	MGAT4B	HGNC:7048	ENSG00000161013	GGGAGUGGCAGAGGGAGAGG
hsa_m5C_5270	chr6	117907358	117907359	+	ENST00000360388	C96	m5C	C22	5'-GGAGACCCGGGCACGAGGAAACAAGG-3'	.....((((....)).))........ ( -3.20)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	26	chr6:117907338-117907363	SLC35F1	HGNC:21483	ENSG00000196376	GGAGACCCGGGCACGAGGAAACAAGG
hsa_m5C_5271	chr6	159681480	159681481	-	ENST00000538183	C1755	m5C	C8	5'-GGUCUGGCCAGGCCCCUCAGG-3'	(((((....)))))....... ( -4.90)	loop	mRNA	293T;HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	21	chr6:159681468-159681488	SOD2	HGNC:11180	ENSG00000291237	GGUCUGGCCAGGCCCCUCAGG
hsa_m5C_5272	chr6	43143437	43143438	+	ENST00000230419	C2244	m5C	C9	5'-GGAGGAGUCGGAGG-3'	NA	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	38168991	38168991	14	chr6:43143430-43143443	PTK7	HGNC:9618	ENSG00000112655	GGAGGAGUCGGAGG
hsa_m5C_5273	chr7	100888364	100888365	+	ENST00000611405	C2781	m5C	C17	5'-GGCCAGGGAGGUUAUCCUGGG-3'	..(((((........))))). ( -8.20)	loop	mRNA	293T;HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	21	chr7:100888349-100888369	SRRT	HGNC:24101	ENSG00000087087	GGCCAGGGAGGUUAUCCUGGG
hsa_m5C_5274	chr7	1539953	1539954	+	ENST00000343242	C291	m5C	C15	5'-G^GUCAAGAAGGAGGCGG-3'	.(((........))).. ( -1.60)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	17	chr7:1539228-1539228;1539941-1539956	MAFK	HGNC:6782	ENSG00000198517	GGUCAAGAAGGAGGCGG
hsa_m5C_5275	chr7	5605433	5605434	+	ENST00000382361	C1563	m5C	C6	5'-GGCCUCGGCGGAAACCGUGG-3'	..((.(((......))).)) ( -5.00)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	20	chr7:5605429-5605448	FSCN1	HGNC:11148	ENSG00000075618	GGCCUCGGCGGAAACCGUGG
hsa_m5C_5276	chr7	98400909	98400910	-	ENST00000005260	C181	m5C	C7	5'-GGAGUCCGGCGGCCACGAGG-3'	.....((..((....)).)) ( -1.60)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	20	chr7:98400897-98400916	BAIAP2L1	HGNC:21649	ENSG00000006453	GGAGUCCGGCGGCCACGAGG
hsa_m5C_5277	chr7	99466147	99466148	-	ENST00000449683	C20	m5C	C20	5'-GGCACAGCGGACACCAGGACUCCAAAAUGG-3'	........(((.........)))....... ( -1.00)	loop	mRNA	293T;HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	30	chr7:99466138-99466167	ATP5MF	HGNC:848	ENSG00000241468	GGCACAGCGGACACCAGGACUCCAAAAUGG
hsa_m5C_5278	chr8	140529759	140529760	-	ENST00000220592	C4991	m5C	C8	5'-GGUACUUCAGGGAUGGCCAGG-3'	(((............)))... ( -1.40)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	21	chr8:140529747-140529767	AGO2	HGNC:3263	ENSG00000123908	GGUACUUCAGGGAUGGCCAGG
hsa_m5C_5279	chr9	100427279	100427280	+	ENST00000395067	C138	m5C	C7	5'-GGCGUUCGGGAGCCCGCGGCCCUCCCGG-3'	......((((((((...)))..))))). (-10.90)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	28	chr9:100427274-100427301	MSANTD3	HGNC:23370	ENSG00000066697	GGCGUUCGGGAGCCCGCGGCCCUCCCGG
hsa_m5C_5280	chr9	133422200	133422201	+	ENST00000371929	C202	m5C	C4	5'-GGACUGGGCUGCAGG-3'	...(((.....))). ( -2.30)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	38168991	38168991	15	chr9:133422198-133422212	ADAMTS13	HGNC:1366	ENSG00000160323	GGACUGGGCUGCAGG
hsa_m5C_5281	chr9	134842987	134842988	+	ENST00000371817	C6587	m5C	C26	5'-GGACAGAAUGGGCGAGGCAUGGAUUCUGG-3'	...((((((..((...))....)))))). ( -6.10)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	29	chr9:134842963-134842991	COL5A1	HGNC:2209	ENSG00000130635	GGACAGAAUGGGCGAGGCAUGGAUUCUGG
hsa_m5C_5282	chr9	135501031	135501032	+	ENST00000371785	C287	m5C	C37	5'-GG^GUGCCCGGGCCCCGUCGCGCUGGUUGGGCUUUCUCGGG-3'	.....((((((.((((..((....))))))....)))))) (-12.50)	loop	mRNA	293T;HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	40	chr9:135500752-135500753;135500998-135501035	MRPS2	HGNC:14495	ENSG00000122140	GGGUGCCCGGGCCCCGUCGCGCUGGUUGGGCUUUCUCGGG
hsa_m5C_5283	chr9	136673234	136673235	-	ENST00000371696	C1454	m5C	C22	5'-GGGCCACAGGGAGCCGGGAAUCGGG-3'	.(((........))).......... ( -3.80)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	38168991	38168991	25	chr9:136673232-136673256	AGPAT2	HGNC:325	ENSG00000169692	GGGCCACAGGGAGCCGGGAAUCGGG
hsa_m5C_5284	chr9	136723821	136723822	+	ENST00000371691	C2182	m5C	C17	5'-GGAGCUGGCCAGGUGCCAGG-3'	....(((((.....))))). ( -7.40)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	20	chr9:136723806-136723825	DIPK1B	HGNC:28290	ENSG00000165716	GGAGCUGGCCAGGUGCCAGG
hsa_m5C_5285	chr9	137043729	137043730	-	ENST00000371600	C363	m5C	C17	5'-GGCCUCCUGAGGCCCUCGGGUGCCACCUGG-3'	(((..((((((...)))))).)))...... (-12.80)	loop	mRNA	293T	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	30	chr9:137043717-137043746	NPDC1	HGNC:7899	ENSG00000107281	GGCCUCCUGAGGCCCUCGGGUGCCACCUGG
hsa_m5C_5286	chr9	137070278	137070279	-	ENST00000409687	C279	m5C	C12	5'-GGGCACCGACGCGCGGGAGCUGCCCCGCGGGGUGCUGGAGGG-3'	.((((((..((((.(((.....))))))).))))))...... (-22.20)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	42	chr9:137070249-137070290	SAPCD2	HGNC:28055	ENSG00000186193	GGGCACCGACGCGCGGGAGCUGCCCCGCGGGGUGCUGGAGGG
hsa_m5C_5287	chr9	35712869	35712870	-	ENST00000706939	C3731	m5C	C23	5'-GGCGAAAAAGGCAGCUGGCCAUCCAGG-3'	.((.......))..((((....)))). ( -5.00)	loop	mRNA	293T;HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	27	chr9:35712866-35712892	TLN1	HGNC:11845	ENSG00000137076	GGCGAAAAAGGCAGCUGGCCAUCCAGG
hsa_m5C_5288	chrX	53431842	53431843	-	ENST00000684692	C572	m5C	C35	5'-GGGGGGAAUAGUGGGCAUGACACUGCCCAUUGCUCGGG-3'	.....((.(((((((((......))))))))).))... (-14.20)	loop	mRNA	HeLa	UBS-seq:(High)	pqsfinder&qgrs:(Low)	38168991	38168991	38	chrX:53431840-53431877	HSD17B10	HGNC:4800	ENSG00000072506	GGGGGGAAUAGUGGGCAUGACACUGCCCAUUGCUCGGG
hsa_m5C_5289	chr21	8987054	8987055	+	hsa-mir-3648-2	C57	m5C	C36	5'-GGGGGGAGCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGG-3'	.((((..((((...((.((......))))...))))..))))... (-20.50)	bulge	pre-miRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr21:8987020-8987064	MIR3648-2	HGNC:50843	ENSG00000264462	GGGGGGAGCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGG
hsa_m5C_5290	chr21	8987057	8987058	+	hsa-mir-3648-2	C60	m5C	C39	5'-GGGGGGAGCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGG-3'	.((((..((((...((.((......))))...))))..))))... (-20.50)	bulge	pre-miRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr21:8987020-8987064	MIR3648-2	HGNC:50843	ENSG00000264462	GGGGGGAGCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGG
hsa_m5C_5291	chr21	8987058	8987059	+	hsa-mir-3648-2	C61	m5C	C40	5'-GGGGGGAGCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGG-3'	.((((..((((...((.((......))))...))))..))))... (-20.50)	bulge	pre-miRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr21:8987020-8987064	MIR3648-2	HGNC:50843	ENSG00000264462	GGGGGGAGCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGG
hsa_m5C_5292	chr21	8987059	8987060	+	hsa-mir-3648-2	C62	m5C	C41	5'-GGGGGGAGCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGG-3'	.((((..((((...((.((......))))...))))..))))... (-20.50)	bulge	pre-miRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr21:8987020-8987064	MIR3648-2	HGNC:50843	ENSG00000264462	GGGGGGAGCCGCGGGGAUCGCCGAGGGCCGGUCGGCCGCCCCGGG
hsa_m5C_5293	chr21	8987623	8987624	+	hsa-mir-10396a	C8	m5C	C4	5'-GGGCUCGGAGCCGGGCUUCGGCCGGGCCCCGGG-3'	...(((((.(((.(((....))).))).))))) (-20.30)	loop	pre-miRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	30872485	33	chr21:8987621-8987653	MIR10396A	HGNC:54005	NA	GGGCUCGGAGCCGGGCUUCGGCCGGGCCCCGGG
hsa_m5C_5294	chr21	8987623	8987624	+	hsa-miR-10396a-5p	C8	m5C	C8	5'-GGCGGGGCUCGG-3'	NA	loop	mature-miRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	30872485	12	chr21:8987617-8987628	MIR10396A	HGNC:54005	NA	GGCGGGGCUCGG
hsa_m5C_5295	chr21	8987625	8987626	+	hsa-mir-10396a	C10	m5C	C6	5'-GGGCUCGGAGCCGGGCUUCGGCCGGGCCCCGGG-3'	...(((((.(((.(((....))).))).))))) (-20.30)	loop	pre-miRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	30872485	33	chr21:8987621-8987653	MIR10396A	HGNC:54005	NA	GGGCUCGGAGCCGGGCUUCGGCCGGGCCCCGGG
hsa_m5C_5296	chr21	8987625	8987626	+	hsa-miR-10396a-5p	C10	m5C	C10	5'-GGCGGGGCUCGG-3'	NA	loop	mature-miRNA	-	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	30872485	12	chr21:8987617-8987628	MIR10396A	HGNC:54005	NA	GGCGGGGCUCGG
hsa_m5C_5297	chr19	58563244	58563245	-	ENST00000215057	C1353	m5C	C17	5'-GGGGCCGGAGCCGGGGCCGCCCCAGCACUGGGGGCGGGG-3'	..(((....)))....(((((((.......))))))).. (-19.50)	loop	mRNA	NA;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa,siCTRL;HeLa	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	39	chr19:58563223-58563261	MZF1	HGNC:13108	ENSG00000099326	GGGGCCGGAGCCGGGGCCGCCCCAGCACUGGGGGCGGGG
hsa_m5C_5298	chr16	29810936	29810937	+	ENST00000219782	C2538	m5C	C24	5'-GGGGCCAGGGUGAGCGAGGGGUCCAGGG-3'	.(((((.............))))).... ( -6.60)	loop	mRNA	NA;SNB19;HeLa	UBS-seq:(High);m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;38168991	28418038;38168991	28	chr16:29810914-29810941	MAZ	HGNC:6914	ENSG00000103495	GGGGCCAGGGUGAGCGAGGGGUCCAGGG
hsa_m5C_5299	chr19	10391231	10391232	-	ENST00000222005	C1519	m5C	C25	5'-GGGGAGGGUCCCCAGCCAAGGGGCCGGCUCUCGUCACUGGG-3'	((.((((((((((......))))...)))))).))...... (-17.50)	loop	mRNA	NA;HeLa,rip antibody: ALYREF;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	41	chr19:10391216-10391256	CDC37	HGNC:1735	ENSG00000105401	GGGGAGGGUCCCCAGCCAAGGGGCCGGCUCUCGUCACUGGG
hsa_m5C_5300	chr19	49640036	49640037	-	ENST00000246792	C107	m5C	C31	5'-GGGGGCGGCCCCGGGGCGGGGGACCUGGGCCCGGGG-3'	........(((((((.((((...))))..))))))) (-19.40)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	36	chr19:49640032-49640067	RRAS	HGNC:10447	ENSG00000126458	GGGGGCGGCCCCGGGGCGGGGGACCUGGGCCCGGGG
hsa_m5C_5301	chr19	49640035	49640036	-	ENST00000246792	C108	m5C	C32	5'-GGGGGCGGCCCCGGGGCGGGGGACCUGGGCCCGGGG-3'	........(((((((.((((...))))..))))))) (-19.40)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	36	chr19:49640032-49640067	RRAS	HGNC:10447	ENSG00000126458	GGGGGCGGCCCCGGGGCGGGGGACCUGGGCCCGGGG
hsa_m5C_5302	chr19	49640058	49640059	-	ENST00000246792	C85	m5C	C9	5'-GGGGGCGGCCCCGGGGCGGGGGACCUGGGCCCGGGG-3'	........(((((((.((((...))))..))))))) (-19.40)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	36	chr19:49640032-49640067	RRAS	HGNC:10447	ENSG00000126458	GGGGGCGGCCCCGGGGCGGGGGACCUGGGCCCGGGG
hsa_m5C_5303	chr19	49640057	49640058	-	ENST00000246792	C86	m5C	C10	5'-GGGGGCGGCCCCGGGGCGGGGGACCUGGGCCCGGGG-3'	........(((((((.((((...))))..))))))) (-19.40)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	36	chr19:49640032-49640067	RRAS	HGNC:10447	ENSG00000126458	GGGGGCGGCCCCGGGGCGGGGGACCUGGGCCCGGGG
hsa_m5C_5304	chr19	49640056	49640057	-	ENST00000246792	C87	m5C	C11	5'-GGGGGCGGCCCCGGGGCGGGGGACCUGGGCCCGGGG-3'	........(((((((.((((...))))..))))))) (-19.40)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	36	chr19:49640032-49640067	RRAS	HGNC:10447	ENSG00000126458	GGGGGCGGCCCCGGGGCGGGGGACCUGGGCCCGGGG
hsa_m5C_5305	chr19	49640055	49640056	-	ENST00000246792	C88	m5C	C12	5'-GGGGGCGGCCCCGGGGCGGGGGACCUGGGCCCGGGG-3'	........(((((((.((((...))))..))))))) (-19.40)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	36	chr19:49640032-49640067	RRAS	HGNC:10447	ENSG00000126458	GGGGGCGGCCCCGGGGCGGGGGACCUGGGCCCGGGG
hsa_m5C_5306	chrX	153688115	153688116	+	ENST00000253122	C191	m5C	C23	5'-GGGCAGCCUCCGCGGGCCCCGGCCGGGGCGGGGGGCGCGGG-3'	((....)).(((((..((((.((....)).)))).))))). (-23.10)	loop	mRNA	T24;NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	41	chrX:153688094-153688134	SLC6A8	HGNC:11055	ENSG00000130821	GGGCAGCCUCCGCGGGCCCCGGCCGGGGCGGGGGGCGCGGG
hsa_m5C_5307	chrX	153688116	153688117	+	ENST00000253122	C192	m5C	C24	5'-GGGCAGCCUCCGCGGGCCCCGGCCGGGGCGGGGGGCGCGGG-3'	((....)).(((((..((((.((....)).)))).))))). (-23.10)	loop	mRNA	T24;NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	41	chrX:153688094-153688134	SLC6A8	HGNC:11055	ENSG00000130821	GGGCAGCCUCCGCGGGCCCCGGCCGGGGCGGGGGGCGCGGG
hsa_m5C_5308	chrX	153688121	153688122	+	ENST00000253122	C197	m5C	C29	5'-GGGCAGCCUCCGCGGGCCCCGGCCGGGGCGGGGGGCGCGGG-3'	((....)).(((((..((((.((....)).)))).))))). (-23.10)	loop	mRNA	T24;NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	41	chrX:153688094-153688134	SLC6A8	HGNC:11055	ENSG00000130821	GGGCAGCCUCCGCGGGCCCCGGCCGGGGCGGGGGGCGCGGG
hsa_m5C_5309	chr18	23136251	23136252	+	ENST00000256925	C768	m5C	C10	5'-GGGGUGGCGCGGGGGUUCGCGAGUCCCCUGGGCGCCGGCCGGG-3'	.((.(((((((((((.........)))))..)))))).))... (-24.10)	loop	mRNA	NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	43	chr18:23136243-23136285	CABLES1	HGNC:25097	ENSG00000134508	GGGGUGGCGCGGGGGUUCGCGAGUCCCCUGGGCGCCGGCCGGG
hsa_m5C_5310	chr16	2135632	2135633	-	ENST00000262304	C266	m5C	C13	5'-GGGCCUGUGGCUCGGGGCGCUGGCGGGGGGCCCCGGG-3'	(((((...)))))(((((.((.....)).)))))... (-21.10)	loop	mRNA	HeLa	m5C-RIP-seq:(Medium);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	37	chr16:2135609-2135645	PKD1	HGNC:9008	ENSG00000008710	GGGCCUGUGGCUCGGGGCGCUGGCGGGGGGCCCCGGG
hsa_m5C_5311	chr18	62715926	62715927	+	ENST00000262719	C387	m5C	C5	5'-GGGGCCGCUGCCGGGCAGAGCGGGGGGUGCCGGG-3'	..(((..((.(((.......))).))..)))... (-13.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	34	chr18:62715923-62715956	PHLPP1	HGNC:20610	ENSG00000081913	GGGGCCGCUGCCGGGCAGAGCGGGGGGUGCCGGG
hsa_m5C_5312	chr18	62715927	62715928	+	ENST00000262719	C388	m5C	C6	5'-GGGGCCGCUGCCGGGCAGAGCGGGGGGUGCCGGG-3'	..(((..((.(((.......))).))..)))... (-13.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	34	chr18:62715923-62715956	PHLPP1	HGNC:20610	ENSG00000081913	GGGGCCGCUGCCGGGCAGAGCGGGGGGUGCCGGG
hsa_m5C_5313	chr3	49414953	49414954	+	ENST00000273590	C408	m5C	C12	5'-GGGACAACUGCCGGGGGUUCAGGGUUGGUAGCAGGG-3'	.......(((((((..........)))))))..... ( -6.50)	loop	mRNA	NA	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	36	chr3:49414943-49414978	TCTA	HGNC:11692	ENSG00000145022	GGGACAACUGCCGGGGGUUCAGGGUUGGUAGCAGGG
hsa_m5C_5314	chr11	75008370	75008371	+	ENST00000294064	C3393	m5C	C4	5'-GGGCAGGAUUGGUGCAGGGAGGAAUUGGGGAAGGGG-3'	..(((.......)))..................... ( -2.00)	bulge	mRNA	NA;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	36	chr11:75008368-75008403	NEU3	HGNC:7760	ENSG00000162139	GGGCAGGAUUGGUGCAGGGAGGAAUUGGGGAAGGGG
hsa_m5C_5315	chr5	172006549	172006550	-	ENST00000296933	C324	m5C	C4	5'-GGGCCGUUCGCUGCUGCGCGGGGAGAGCGAGGCGGGGCCGCCGGG-3'	.((((.....(((((.(((.......))).)))))))))...... (-17.70)	bulge	mRNA	T24;NA	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	45	chr5:172006509-172006553	FBXW11	HGNC:13607	ENSG00000072803	GGGCCGUUCGCUGCUGCGCGGGGAGAGCGAGGCGGGGCCGCCGGG
hsa_m5C_5316	chr5	172006548	172006549	-	ENST00000296933	C325	m5C	C5	5'-GGGCCGUUCGCUGCUGCGCGGGGAGAGCGAGGCGGGGCCGCCGGG-3'	.((((.....(((((.(((.......))).)))))))))...... (-17.70)	bulge	mRNA	T24;NA	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	45	chr5:172006509-172006553	FBXW11	HGNC:13607	ENSG00000072803	GGGCCGUUCGCUGCUGCGCGGGGAGAGCGAGGCGGGGCCGCCGGG
hsa_m5C_5317	chr19	7294171	7294172	-	ENST00000302850	C243	m5C	C4	5'-GGGCCCCGAGAUCCUGGGACGGGGCCCGGGCCGCAGCGGCCGGGG-3'	((((((((...........)))))))).(((((...))))).... (-27.10)	bulge	mRNA	NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	45	chr19:7294131-7294175	INSR	HGNC:6091	ENSG00000171105	GGGCCCCGAGAUCCUGGGACGGGGCCCGGGCCGCAGCGGCCGGGG
hsa_m5C_5318	chr19	7294170	7294171	-	ENST00000302850	C244	m5C	C5	5'-GGGCCCCGAGAUCCUGGGACGGGGCCCGGGCCGCAGCGGCCGGGG-3'	((((((((...........)))))))).(((((...))))).... (-27.10)	bulge	mRNA	NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	45	chr19:7294131-7294175	INSR	HGNC:6091	ENSG00000171105	GGGCCCCGAGAUCCUGGGACGGGGCCCGGGCCGCAGCGGCCGGGG
hsa_m5C_5319	chr19	7294169	7294170	-	ENST00000302850	C245	m5C	C6	5'-GGGCCCCGAGAUCCUGGGACGGGGCCCGGGCCGCAGCGGCCGGGG-3'	((((((((...........)))))))).(((((...))))).... (-27.10)	bulge	mRNA	NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	45	chr19:7294131-7294175	INSR	HGNC:6091	ENSG00000171105	GGGCCCCGAGAUCCUGGGACGGGGCCCGGGCCGCAGCGGCCGGGG
hsa_m5C_5320	chr19	7294168	7294169	-	ENST00000302850	C246	m5C	C7	5'-GGGCCCCGAGAUCCUGGGACGGGGCCCGGGCCGCAGCGGCCGGGG-3'	((((((((...........)))))))).(((((...))))).... (-27.10)	bulge	mRNA	NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	45	chr19:7294131-7294175	INSR	HGNC:6091	ENSG00000171105	GGGCCCCGAGAUCCUGGGACGGGGCCCGGGCCGCAGCGGCCGGGG
hsa_m5C_5321	chr19	7294150	7294151	-	ENST00000302850	C264	m5C	C25	5'-GGGCCCCGAGAUCCUGGGACGGGGCCCGGGCCGCAGCGGCCGGGG-3'	((((((((...........)))))))).(((((...))))).... (-27.10)	loop	mRNA	NA;HeLa,siCTRL;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	45	chr19:7294131-7294175	INSR	HGNC:6091	ENSG00000171105	GGGCCCCGAGAUCCUGGGACGGGGCCCGGGCCGCAGCGGCCGGGG
hsa_m5C_5322	chr19	7294149	7294150	-	ENST00000302850	C265	m5C	C26	5'-GGGCCCCGAGAUCCUGGGACGGGGCCCGGGCCGCAGCGGCCGGGG-3'	((((((((...........)))))))).(((((...))))).... (-27.10)	loop	mRNA	NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	45	chr19:7294131-7294175	INSR	HGNC:6091	ENSG00000171105	GGGCCCCGAGAUCCUGGGACGGGGCCCGGGCCGCAGCGGCCGGGG
hsa_m5C_5323	chr19	7294148	7294149	-	ENST00000302850	C266	m5C	C27	5'-GGGCCCCGAGAUCCUGGGACGGGGCCCGGGCCGCAGCGGCCGGGG-3'	((((((((...........)))))))).(((((...))))).... (-27.10)	loop	mRNA	NA;HeLa,siCTRL;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	45	chr19:7294131-7294175	INSR	HGNC:6091	ENSG00000171105	GGGCCCCGAGAUCCUGGGACGGGGCCCGGGCCGCAGCGGCCGGGG
hsa_m5C_5324	chr2	235494626	235494627	+	ENST00000304032	C585	m5C	C4	5'-GGGCCCCGGGGCGCGGGGCGGCGGCGGCGGG-3'	..((((((.....)))))).((....))... (-15.60)	bulge	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	31	chr2:235494624-235494654	AGAP1	HGNC:16922	ENSG00000157985	GGGCCCCGGGGCGCGGGGCGGCGGCGGCGGG
hsa_m5C_5325	chr2	235494629	235494630	+	ENST00000304032	C588	m5C	C7	5'-GGGCCCCGGGGCGCGGGGCGGCGGCGGCGGG-3'	..((((((.....)))))).((....))... (-15.60)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	31	chr2:235494624-235494654	AGAP1	HGNC:16922	ENSG00000157985	GGGCCCCGGGGCGCGGGGCGGCGGCGGCGGG
hsa_m5C_5326	chr7	66093009	66093010	+	ENST00000304874	C1574	m5C	C13	5'-GGGCUUUCGGGGCUGGCCAGUGGGGACAGUCAGGG-3'	..........(((((.((.....)).))))).... ( -8.10)	bulge	mRNA	NA	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	35	chr7:66092998-66093032	ASL	HGNC:746	ENSG00000126522	GGGCUUUCGGGGCUGGCCAGUGGGGACAGUCAGGG
hsa_m5C_5327	chr7	66093014	66093015	+	ENST00000304874	C1579	m5C	C18	5'-GGGCUUUCGGGGCUGGCCAGUGGGGACAGUCAGGG-3'	..........(((((.((.....)).))))).... ( -8.10)	bulge	mRNA	NA	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	35	chr7:66092998-66093032	ASL	HGNC:746	ENSG00000126522	GGGCUUUCGGGGCUGGCCAGUGGGGACAGUCAGGG
hsa_m5C_5328	chr1	53327943	53327944	-	ENST00000306052	C127	m5C	C9	5'-GGGGAGCGCGGGGCGCGGCGGCCGGAGCCCCGGGCCCGCCAUGGG-3'	((((.((.((((((.(((...)))..)))))).)))).))..... (-27.70)	loop	mRNA	T24;NA;HeLa	m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	45	chr1:53327908-53327952	LRP8	HGNC:6700	ENSG00000157193	GGGGAGCGCGGGGCGCGGCGGCCGGAGCCCCGGGCCCGCCAUGGG
hsa_m5C_5329	chr1	36156165	36156166	+	ENST00000316156	C202	m5C	C9	5'-GGGUUGGGCCGAGGCCGGGACUGGG-3'	.((((.(((....)))..))))... ( -7.20)	loop	mRNA	NA	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database	28418038	25	chr1:36156158-36156182	MAP7D1	HGNC:25514	ENSG00000116871	GGGUUGGGCCGAGGCCGGGACUGGG
hsa_m5C_5330	chr1	36156166	36156167	+	ENST00000316156	C203	m5C	C10	5'-GGGUUGGGCCGAGGCCGGGACUGGG-3'	.((((.(((....)))..))))... ( -7.20)	loop	mRNA	NA	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	25	chr1:36156158-36156182	MAP7D1	HGNC:25514	ENSG00000116871	GGGUUGGGCCGAGGCCGGGACUGGG
hsa_m5C_5331	chr15	48644880	48644881	-	ENST00000316623	C205	m5C	C11	5'-GGGGGACGGGCGGCGGGAUAGCGGG-3'	............((......))... ( -1.90)	bulge	mRNA	NA	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database	28418038	25	chr15:48644867-48644891	FBN1	HGNC:3603	ENSG00000166147	GGGGGACGGGCGGCGGGAUAGCGGG
hsa_m5C_5332	chr19	45713048	45713049	-	ENST00000317683	C573	m5C	C6	5'-GGGGGCCGGGAGGGCCCCCCUGCUGCUGAGGAGGG-3'	.((((((.....))))))(((.((....)).))). (-20.60)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	35	chr19:45713020-45713054	FBXO46	HGNC:25069	ENSG00000177051	GGGGGCCGGGAGGGCCCCCCUGCUGCUGAGGAGGG
hsa_m5C_5333	chr19	45713047	45713048	-	ENST00000317683	C574	m5C	C7	5'-GGGGGCCGGGAGGGCCCCCCUGCUGCUGAGGAGGG-3'	.((((((.....))))))(((.((....)).))). (-20.60)	bulge	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	35	chr19:45713020-45713054	FBXO46	HGNC:25069	ENSG00000177051	GGGGGCCGGGAGGGCCCCCCUGCUGCUGAGGAGGG
hsa_m5C_5334	chr19	45713039	45713040	-	ENST00000317683	C582	m5C	C15	5'-GGGGGCCGGGAGGGCCCCCCUGCUGCUGAGGAGGG-3'	.((((((.....))))))(((.((....)).))). (-20.60)	bulge	mRNA	T24;HeLa,rip antibody: ALYREF;NA;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	35	chr19:45713020-45713054	FBXO46	HGNC:25069	ENSG00000177051	GGGGGCCGGGAGGGCCCCCCUGCUGCUGAGGAGGG
hsa_m5C_5335	chr19	45713038	45713039	-	ENST00000317683	C583	m5C	C16	5'-GGGGGCCGGGAGGGCCCCCCUGCUGCUGAGGAGGG-3'	.((((((.....))))))(((.((....)).))). (-20.60)	bulge	mRNA	T24;HeLa,rip antibody: ALYREF;NA;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	35	chr19:45713020-45713054	FBXO46	HGNC:25069	ENSG00000177051	GGGGGCCGGGAGGGCCCCCCUGCUGCUGAGGAGGG
hsa_m5C_5336	chr19	45713037	45713038	-	ENST00000317683	C584	m5C	C17	5'-GGGGGCCGGGAGGGCCCCCCUGCUGCUGAGGAGGG-3'	.((((((.....))))))(((.((....)).))). (-20.60)	bulge	mRNA	T24;NA	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	35	chr19:45713020-45713054	FBXO46	HGNC:25069	ENSG00000177051	GGGGGCCGGGAGGGCCCCCCUGCUGCUGAGGAGGG
hsa_m5C_5337	chr19	45713036	45713037	-	ENST00000317683	C585	m5C	C18	5'-GGGGGCCGGGAGGGCCCCCCUGCUGCUGAGGAGGG-3'	.((((((.....))))))(((.((....)).))). (-20.60)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	35	chr19:45713020-45713054	FBXO46	HGNC:25069	ENSG00000177051	GGGGGCCGGGAGGGCCCCCCUGCUGCUGAGGAGGG
hsa_m5C_5338	chr8	144095158	144095159	+	ENST00000318911	C84	m5C	C22	5'-GGGCCCGCGGGGCGCGGGGCUCCCGGG-3'	...((((.(((((.....))))))))) (-15.70)	loop	mRNA	NA;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr8:144095138-144095164	CYC1	HGNC:2579	ENSG00000179091	GGGCCCGCGGGGCGCGGGGCUCCCGGG
hsa_m5C_5339	chr8	144095159	144095160	+	ENST00000318911	C85	m5C	C23	5'-GGGCCCGCGGGGCGCGGGGCUCCCGGG-3'	...((((.(((((.....))))))))) (-15.70)	loop	mRNA	NA;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr8:144095138-144095164	CYC1	HGNC:2579	ENSG00000179091	GGGCCCGCGGGGCGCGGGGCUCCCGGG
hsa_m5C_5340	chr8	144095160	144095161	+	ENST00000318911	C86	m5C	C24	5'-GGGCCCGCGGGGCGCGGGGCUCCCGGG-3'	...((((.(((((.....))))))))) (-15.70)	loop	mRNA	NA;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	27	chr8:144095138-144095164	CYC1	HGNC:2579	ENSG00000179091	GGGCCCGCGGGGCGCGGGGCUCCCGGG
hsa_m5C_5341	chr3	33114075	33114076	+	ENST00000320954	C63	m5C	C6	5'-GGGCGCGAUGGAGCCGGGGCGCCGGGGGG-3'	.(((((..((....))..)))))...... (-10.10)	bulge	mRNA	NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	28418038	29	chr3:33114071-33114099	CRTAP	HGNC:2379	ENSG00000170275	GGGCGCGAUGGAGCCGGGGCGCCGGGGGG
hsa_m5C_5342	chr19	4043553	4043554	-	ENST00000322357	C6186	m5C	C25	5'-GGGCCAGGCCUGGUGAAUGGGGGGCGGGGCGGCGCCCUCAGGG-3'	((((...))))........(((((((......))))))).... (-17.80)	loop	mRNA	NA;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	43	chr19:4043536-4043578	ZBTB7A	HGNC:18078	ENSG00000178951	GGGCCAGGCCUGGUGAAUGGGGGGCGGGGCGGCGCCCUCAGGG
hsa_m5C_5343	chr11	376919	376920	+	ENST00000329962	C2102	m5C	C23	5'-GGGCGCAGGCCACCCAAGGGGGCCGGGAGGG-3'	.......((((.((....))))))....... (-10.90)	loop	mRNA	HeLa,siCTRL;T24;NA;HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	31	chr11:376898-376928	B4GALNT4	HGNC:26315	ENSG00000182272	GGGCGCAGGCCACCCAAGGGGGCCGGGAGGG
hsa_m5C_5344	chr11	376920	376921	+	ENST00000329962	C2103	m5C	C24	5'-GGGCGCAGGCCACCCAAGGGGGCCGGGAGGG-3'	.......((((.((....))))))....... (-10.90)	loop	mRNA	T24;NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	31	chr11:376898-376928	B4GALNT4	HGNC:26315	ENSG00000182272	GGGCGCAGGCCACCCAAGGGGGCCGGGAGGG
hsa_m5C_5345	chr5	79513945	79513946	-	ENST00000334082	C189	m5C	C15	5'-GGCGGCGGCGGGGCCCGGGGAAUGUGAGG-3'	...(((......))).............. ( -4.80)	loop	mRNA	NA	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	29	chr5:79513932-79513960	HOMER1	HGNC:17512	ENSG00000152413	GGCGGCGGCGGGGCCCGGGGAAUGUGAGG
hsa_m5C_5346	chr12	49794837	49794838	-	ENST00000335999	C3212	m5C	C16	5'-GGGCCCAACACGGGGCUGGGGCAGGUGCAGGG-3'	.(((((......)))))...((....)).... ( -9.10)	loop	mRNA	HeLa,siCTRL;T24;NA;HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	32	chr12:49794822-49794853	NCKAP5L	HGNC:29321	ENSG00000167566	GGGCCCAACACGGGGCUGGGGCAGGUGCAGGG
hsa_m5C_5347	chr20	57709787	57709788	-	ENST00000341744	C228	m5C	C18	5'-GGGCUGCCGAGGGGAGGCCGGGGGGG-3'	.((((.((....)).))))....... ( -9.50)	bulge	mRNA	HeLa,rip antibody: ALYREF;Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	26	chr20:57709780-57709805	PMEPA1	HGNC:14107	ENSG00000124225	GGGCUGCCGAGGGGAGGCCGGGGGGG
hsa_m5C_5348	chr20	57709786	57709787	-	ENST00000341744	C229	m5C	C19	5'-GGGCUGCCGAGGGGAGGCCGGGGGGG-3'	.((((.((....)).))))....... ( -9.50)	bulge	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31061524	26	chr20:57709780-57709805	PMEPA1	HGNC:14107	ENSG00000124225	GGGCUGCCGAGGGGAGGCCGGGGGGG
hsa_m5C_5349	chr20	33675928	33675929	-	ENST00000343380	C2238	m5C	C24	5'-GGGGUGGGCCCUCUCCAGGGGGCCAGUUCAGGG-3'	(((.(((.((((.....)))).))).))).... (-15.30)	loop	mRNA	NA;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	33	chr20:33675920-33675952	E2F1	HGNC:3113	ENSG00000101412	GGGGUGGGCCCUCUCCAGGGGGCCAGUUCAGGG
hsa_m5C_5350	chr11	66467002	66467003	+	ENST00000349459	C259	m5C	C38	5'-GGGGCCGAGCAGGGGCUAGGCGGGGAGGGAGCGGCGCCCAGCGGG-3'	....(((.....((((...((.........))...))))..))). (-13.10)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	45	chr11:66466966-66467010	PELI3	HGNC:30010	ENSG00000174516	GGGGCCGAGCAGGGGCUAGGCGGGGAGGGAGCGGCGCCCAGCGGG
hsa_m5C_5351	chr19	19663424	19663425	-	ENST00000357324	C252	m5C	C6	5'-GGGUGCCGCAGCCGCUGGCUGCUGGGGCUGGGGCAGCAGUUGGG-3'	...((((.(((((.((((...))))))))).))))......... (-20.20)	bulge	mRNA	293T;HeLa,siCTRL;lung;Testis;NA;HeLa,rip antibody: ALYREF;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	UBS-seq:(High);m5C-RIP-seq:(Medium);RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;38168991;m6A-Atlas database;RMVar database	30872485;28418038;31061524;38168991	44	chr19:19663387-19663430	ATP13A1	HGNC:24215	ENSG00000105726	GGGUGCCGCAGCCGCUGGCUGCUGGGGCUGGGGCAGCAGUUGGG
hsa_m5C_5352	chr5	71455815	71455816	+	ENST00000358731	C166	m5C	C37	5'-GGGGAGGGCGUAGUUCCUAAUCCCCUUUCCGGGCAGCCGCCGGGG-3'	((((((((.......)))..)))))...((.(((....))).)). (-18.40)	bulge	mRNA	NA	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	45	chr5:71455780-71455824	BDP1	HGNC:13652	ENSG00000145734	GGGGAGGGCGUAGUUCCUAAUCCCCUUUCCGGGCAGCCGCCGGGG
hsa_m5C_5353	chr16	67280445	67280446	+	ENST00000360461	C2937	m5C	C33	5'-GGGGUAGGGUUGGUAGGGGACCCAGGUCCAAGCAGGG-3'	(((...(((((.......)))))...)))........ (-10.00)	bulge	mRNA	NA;293T;Testis;HeLa	UBS-seq:(High);m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;38168991	28418038;38168991	37	chr16:67280414-67280450	PLEKHG4	HGNC:24501	ENSG00000196155	GGGGUAGGGUUGGUAGGGGACCCAGGUCCAAGCAGGG
hsa_m5C_5354	chr13	110458869	110458870	+	ENST00000360467	C1821	m5C	C27	5'-GGGCUUCGCAGGCAUCAACGGGGAGCCGGGGAGGAAAGGG-3'	...((((...(((.((......)))))...))))...... ( -9.80)	loop	mRNA	NA;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	30872485	40	chr13:110458844-110458883	COL4A2	HGNC:2203	ENSG00000134871	GGGCUUCGCAGGCAUCAACGGGGAGCCGGGGAGGAAAGGG
hsa_m5C_5355	chr1	23531071	23531072	-	ENST00000361729	C162	m5C	C9	5'-GGGGAGCGCGGGGCGUCCCGGGUCGCGGUGCCCUCGGG-3'	((((.(((((.(((.......))).)).)))))))... (-16.60)	loop	mRNA	NA;HeLa	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038;31061524	38	chr1:23531043-23531080	E2F2	HGNC:3114	ENSG00000007968	GGGGAGCGCGGGGCGUCCCGGGUCGCGGUGCCCUCGGG
hsa_m5C_5356	chr15	75020438	75020439	+	ENST00000361900	C2371	m5C	C17	5'-GGGAUUUCAGGUUAGGCAGGGUGGGAGGG-3'	....(((((............)))))... ( -0.10)	loop	mRNA	frontal;frontal cortex	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;RNAfold:(High)	RMBase database;m6A-Atlas database	31061524	29	chr15:75020423-75020451	SCAMP5	HGNC:30386	ENSG00000198794	GGGAUUUCAGGUUAGGCAGGGUGGGAGGG
hsa_m5C_5357	chr9	128656623	128656624	-	ENST00000372715	C224	m5C	C30	5'-GGGUUGCGAGCGGCCCGGGGCCGGGGCGGCCAGGG-3'	.((((((...(((((...)))))..)))))).... (-18.30)	bulge	mRNA	NA;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	35	chr9:128656619-128656653	DYNC2I2	HGNC:28296	ENSG00000119333	GGGUUGCGAGCGGCCCGGGGCCGGGGCGGCCAGGG
hsa_m5C_5358	chr9	128656622	128656623	-	ENST00000372715	C225	m5C	C31	5'-GGGUUGCGAGCGGCCCGGGGCCGGGGCGGCCAGGG-3'	.((((((...(((((...)))))..)))))).... (-18.30)	bulge	mRNA	NA;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	35	chr9:128656619-128656653	DYNC2I2	HGNC:28296	ENSG00000119333	GGGUUGCGAGCGGCCCGGGGCCGGGGCGGCCAGGG
hsa_m5C_5359	chr1	40040464	40040465	+	ENST00000372797	C233	m5C	C25	5'-GGGCCCGGGCCUCGGGGGCGAUUCCGGG-3'	...(((((((((...))))....))))) (-11.80)	loop	mRNA	Testis	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31061524	28	chr1:40040441-40040468	CAP1	HGNC:20040	ENSG00000131236	GGGCCCGGGCCUCGGGGGCGAUUCCGGG
hsa_m5C_5360	chr6	33621369	33621370	+	ENST00000374316	C828	m5C	C14	5'-GGGCCGGGCGGGGCGGG-3'	..(((......)))... ( -5.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database	31358969	17	chr6:33621357-33621373	ITPR3	HGNC:6182	ENSG00000096433	GGGCCGGGCGGGGCGGG
hsa_m5C_5361	chr17	81637027	81637028	-	ENST00000374747	C33	m5C	C7	5'-GGGAGGCCGGGGCCGGGGCUGAGGCCGCGGCCGGG-3'	....(((((.((((........)))).)))))... (-22.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	35	chr17:81637000-81637034	NPLOC4	HGNC:18261	ENSG00000182446	GGGAGGCCGGGGCCGGGGCUGAGGCCGCGGCCGGG
hsa_m5C_5362	chr17	81637026	81637027	-	ENST00000374747	C34	m5C	C8	5'-GGGAGGCCGGGGCCGGGGCUGAGGCCGCGGCCGGG-3'	....(((((.((((........)))).)))))... (-22.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	35	chr17:81637000-81637034	NPLOC4	HGNC:18261	ENSG00000182446	GGGAGGCCGGGGCCGGGGCUGAGGCCGCGGCCGGG
hsa_m5C_5363	chr17	81637021	81637022	-	ENST00000374747	C39	m5C	C13	5'-GGGAGGCCGGGGCCGGGGCUGAGGCCGCGGCCGGG-3'	....(((((.((((........)))).)))))... (-22.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	35	chr17:81637000-81637034	NPLOC4	HGNC:18261	ENSG00000182446	GGGAGGCCGGGGCCGGGGCUGAGGCCGCGGCCGGG
hsa_m5C_5364	chr17	81637020	81637021	-	ENST00000374747	C40	m5C	C14	5'-GGGAGGCCGGGGCCGGGGCUGAGGCCGCGGCCGGG-3'	....(((((.((((........)))).)))))... (-22.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	35	chr17:81637000-81637034	NPLOC4	HGNC:18261	ENSG00000182446	GGGAGGCCGGGGCCGGGGCUGAGGCCGCGGCCGGG
hsa_m5C_5365	chr17	81637009	81637010	-	ENST00000374747	C51	m5C	C25	5'-GGGAGGCCGGGGCCGGGGCUGAGGCCGCGGCCGGG-3'	....(((((.((((........)))).)))))... (-22.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	35	chr17:81637000-81637034	NPLOC4	HGNC:18261	ENSG00000182446	GGGAGGCCGGGGCCGGGGCUGAGGCCGCGGCCGGG
hsa_m5C_5366	chr17	81637008	81637009	-	ENST00000374747	C52	m5C	C26	5'-GGGAGGCCGGGGCCGGGGCUGAGGCCGCGGCCGGG-3'	....(((((.((((........)))).)))))... (-22.80)	loop	mRNA	T24;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	35	chr17:81637000-81637034	NPLOC4	HGNC:18261	ENSG00000182446	GGGAGGCCGGGGCCGGGGCUGAGGCCGCGGCCGGG
hsa_m5C_5367	chr9	38068764	38068765	-	ENST00000377707	C463	m5C	C4	5'-GGGCGCCCCGGACGCCCCCCGCCGGGGCCGGGGCGCCGAGGG-3'	.(((((((((...(((((.....))))))))))))))..... (-31.90)	bulge	mRNA	NA;293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	42	chr9:38068727-38068768	SHB	HGNC:10838	ENSG00000107338	GGGCGCCCCGGACGCCCCCCGCCGGGGCCGGGGCGCCGAGGG
hsa_m5C_5368	chr9	38068762	38068763	-	ENST00000377707	C465	m5C	C6	5'-GGGCGCCCCGGACGCCCCCCGCCGGGGCCGGGGCGCCGAGGG-3'	.(((((((((...(((((.....))))))))))))))..... (-31.90)	bulge	mRNA	T24;NA	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969;28418038	42	chr9:38068727-38068768	SHB	HGNC:10838	ENSG00000107338	GGGCGCCCCGGACGCCCCCCGCCGGGGCCGGGGCGCCGAGGG
hsa_m5C_5369	chr9	38068761	38068762	-	ENST00000377707	C466	m5C	C7	5'-GGGCGCCCCGGACGCCCCCCGCCGGGGCCGGGGCGCCGAGGG-3'	.(((((((((...(((((.....))))))))))))))..... (-31.90)	bulge	mRNA	T24;HeLa,rip antibody: ALYREF;NA;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	42	chr9:38068727-38068768	SHB	HGNC:10838	ENSG00000107338	GGGCGCCCCGGACGCCCCCCGCCGGGGCCGGGGCGCCGAGGG
hsa_m5C_5370	chr9	38068760	38068761	-	ENST00000377707	C467	m5C	C8	5'-GGGCGCCCCGGACGCCCCCCGCCGGGGCCGGGGCGCCGAGGG-3'	.(((((((((...(((((.....))))))))))))))..... (-31.90)	bulge	mRNA	NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	42	chr9:38068727-38068768	SHB	HGNC:10838	ENSG00000107338	GGGCGCCCCGGACGCCCCCCGCCGGGGCCGGGGCGCCGAGGG
hsa_m5C_5371	chr9	38068759	38068760	-	ENST00000377707	C468	m5C	C9	5'-GGGCGCCCCGGACGCCCCCCGCCGGGGCCGGGGCGCCGAGGG-3'	.(((((((((...(((((.....))))))))))))))..... (-31.90)	bulge	mRNA	NA;HeLa,rip antibody: ALYREF;HeLa,siCTRL;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	42	chr9:38068727-38068768	SHB	HGNC:10838	ENSG00000107338	GGGCGCCCCGGACGCCCCCCGCCGGGGCCGGGGCGCCGAGGG
hsa_m5C_5372	chr9	38068734	38068735	-	ENST00000377707	C493	m5C	C34	5'-GGGCGCCCCGGACGCCCCCCGCCGGGGCCGGGGCGCCGAGGG-3'	.(((((((((...(((((.....))))))))))))))..... (-31.90)	loop	mRNA	T24;NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	42	chr9:38068727-38068768	SHB	HGNC:10838	ENSG00000107338	GGGCGCCCCGGACGCCCCCCGCCGGGGCCGGGGCGCCGAGGG
hsa_m5C_5373	chr9	38068732	38068733	-	ENST00000377707	C495	m5C	C36	5'-GGGCGCCCCGGACGCCCCCCGCCGGGGCCGGGGCGCCGAGGG-3'	.(((((((((...(((((.....))))))))))))))..... (-31.90)	bulge	mRNA	T24;NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	42	chr9:38068727-38068768	SHB	HGNC:10838	ENSG00000107338	GGGCGCCCCGGACGCCCCCCGCCGGGGCCGGGGCGCCGAGGG
hsa_m5C_5374	chr9	38068731	38068732	-	ENST00000377707	C496	m5C	C37	5'-GGGCGCCCCGGACGCCCCCCGCCGGGGCCGGGGCGCCGAGGG-3'	.(((((((((...(((((.....))))))))))))))..... (-31.90)	bulge	mRNA	HeLa,siCTRL;T24;NA;HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	42	chr9:38068727-38068768	SHB	HGNC:10838	ENSG00000107338	GGGCGCCCCGGACGCCCCCCGCCGGGGCCGGGGCGCCGAGGG
hsa_m5C_5375	chr20	3786506	3786507	-	ENST00000379751	C234	m5C	C4	5'-GGGCCCCGGGGCGGGGGGCGCGCCGGG-3'	....(((((.(((.....))).))))) (-17.10)	loop	mRNA	HeLa,siCTRL;T24;NA;HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	27	chr20:3786484-3786510	CENPB	HGNC:1852	ENSG00000125817	GGGCCCCGGGGCGGGGGGCGCGCCGGG
hsa_m5C_5376	chr20	3786505	3786506	-	ENST00000379751	C235	m5C	C5	5'-GGGCCCCGGGGCGGGGGGCGCGCCGGG-3'	....(((((.(((.....))).))))) (-17.10)	loop	mRNA	HeLa,siCTRL;T24;NA;HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	27	chr20:3786484-3786510	CENPB	HGNC:1852	ENSG00000125817	GGGCCCCGGGGCGGGGGGCGCGCCGGG
hsa_m5C_5377	chr20	3786504	3786505	-	ENST00000379751	C236	m5C	C6	5'-GGGCCCCGGGGCGGGGGGCGCGCCGGG-3'	....(((((.(((.....))).))))) (-17.10)	loop	mRNA	HeLa,siCTRL;T24;NA;HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	27	chr20:3786484-3786510	CENPB	HGNC:1852	ENSG00000125817	GGGCCCCGGGGCGGGGGGCGCGCCGGG
hsa_m5C_5378	chr20	3786503	3786504	-	ENST00000379751	C237	m5C	C7	5'-GGGCCCCGGGGCGGGGGGCGCGCCGGG-3'	....(((((.(((.....))).))))) (-17.10)	loop	mRNA	HeLa,siCTRL;T24;NA;HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	27	chr20:3786484-3786510	CENPB	HGNC:1852	ENSG00000125817	GGGCCCCGGGGCGGGGGGCGCGCCGGG
hsa_m5C_5379	chr20	3786498	3786499	-	ENST00000379751	C242	m5C	C12	5'-GGGCCCCGGGGCGGGGGGCGCGCCGGG-3'	....(((((.(((.....))).))))) (-17.10)	loop	mRNA	HeLa,siCTRL;T24;NA;HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	27	chr20:3786484-3786510	CENPB	HGNC:1852	ENSG00000125817	GGGCCCCGGGGCGGGGGGCGCGCCGGG
hsa_m5C_5380	chr20	3786491	3786492	-	ENST00000379751	C249	m5C	C19	5'-GGGCCCCGGGGCGGGGGGCGCGCCGGG-3'	....(((((.(((.....))).))))) (-17.10)	loop	mRNA	HeLa,siCTRL;T24;NA;HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	27	chr20:3786484-3786510	CENPB	HGNC:1852	ENSG00000125817	GGGCCCCGGGGCGGGGGGCGCGCCGGG
hsa_m5C_5381	chr12	130839192	130839193	-	ENST00000392373	C58	m5C	C27	5'-GGGCUGCUGGCGCCGGGCCGGGACCGCGGG-3'	...((((.((..(((...)))..)))))). (-10.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	30	chr12:130839190-130839219	STX2	HGNC:3403	ENSG00000111450	GGGCUGCUGGCGCCGGGCCGGGACCGCGGG
hsa_m5C_5382	chr17	39922518	39922519	-	ENST00000394169	C1988	m5C	C7	5'-GGGUGGCAGGGGAGGGGUAGGG-3'	NA	loop	mRNA	HeLa,siCTRL;T24;NA;HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	22	chr17:39922504-39922525	ORMDL3	HGNC:16038	ENSG00000172057	GGGUGGCAGGGGAGGGGUAGGG
hsa_m5C_5383	chr6	31897164	31897165	-	ENST00000395728	C38	m5C	C33	5'-GGGUCUACCGAGAGGGAGGGGGUUGAUGCGGGCCCGGGGGAGGGG-3'	(((((((((...........)))......)))))).......... (-10.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	45	chr6:31897153-31897197	EHMT2	HGNC:14129	ENSG00000204371	GGGUCUACCGAGAGGGAGGGGGUUGAUGCGGGCCCGGGGGAGGGG
hsa_m5C_5384	chr6	31897163	31897164	-	ENST00000395728	C39	m5C	C34	5'-GGGUCUACCGAGAGGGAGGGGGUUGAUGCGGGCCCGGGGGAGGGG-3'	(((((((((...........)))......)))))).......... (-10.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	45	chr6:31897153-31897197	EHMT2	HGNC:14129	ENSG00000204371	GGGUCUACCGAGAGGGAGGGGGUUGAUGCGGGCCCGGGGGAGGGG
hsa_m5C_5385	chr6	31897162	31897163	-	ENST00000395728	C40	m5C	C35	5'-GGGUCUACCGAGAGGGAGGGGGUUGAUGCGGGCCCGGGGGAGGGG-3'	(((((((((...........)))......)))))).......... (-10.30)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	45	chr6:31897153-31897197	EHMT2	HGNC:14129	ENSG00000204371	GGGUCUACCGAGAGGGAGGGGGUUGAUGCGGGCCCGGGGGAGGGG
hsa_m5C_5386	chr7	5283016	5283017	+	ENST00000396872	C75	m5C	C13	5'-GGGCGCGCCCGGCCCGAGGCUGGGGGAGCGGGGCGGCGUGGCGGG-3'	..((((((((.((((.........)).)).)))).))))...... (-20.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	45	chr7:5283005-5283049	SLC29A4	HGNC:23097	ENSG00000164638	GGGCGCGCCCGGCCCGAGGCUGGGGGAGCGGGGCGGCGUGGCGGG
hsa_m5C_5387	chr7	5283017	5283018	+	ENST00000396872	C76	m5C	C14	5'-GGGCGCGCCCGGCCCGAGGCUGGGGGAGCGGGGCGGCGUGGCGGG-3'	..((((((((.((((.........)).)).)))).))))...... (-20.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	45	chr7:5283005-5283049	SLC29A4	HGNC:23097	ENSG00000164638	GGGCGCGCCCGGCCCGAGGCUGGGGGAGCGGGGCGGCGUGGCGGG
hsa_m5C_5388	chr7	5283018	5283019	+	ENST00000396872	C77	m5C	C15	5'-GGGCGCGCCCGGCCCGAGGCUGGGGGAGCGGGGCGGCGUGGCGGG-3'	..((((((((.((((.........)).)).)))).))))...... (-20.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	45	chr7:5283005-5283049	SLC29A4	HGNC:23097	ENSG00000164638	GGGCGCGCCCGGCCCGAGGCUGGGGGAGCGGGGCGGCGUGGCGGG
hsa_m5C_5389	chr8	22245494	22245495	+	ENST00000397802	C261	m5C	C4	5'-GGGCCCCGACCUCUCCUGACUGGGGCCCGGGGGCUCAUCGGG-3'	(((((((..((((........))))....)))))))...... (-19.90)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	42	chr8:22245492-22245533	POLR3D	HGNC:1080	ENSG00000168495	GGGCCCCGACCUCUCCUGACUGGGGCCCGGGGGCUCAUCGGG
hsa_m5C_5390	chr8	22245495	22245496	+	ENST00000397802	C262	m5C	C5	5'-GGGCCCCGACCUCUCCUGACUGGGGCCCGGGGGCUCAUCGGG-3'	(((((((..((((........))))....)))))))...... (-19.90)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	42	chr8:22245492-22245533	POLR3D	HGNC:1080	ENSG00000168495	GGGCCCCGACCUCUCCUGACUGGGGCCCGGGGGCUCAUCGGG
hsa_m5C_5391	chr8	22245496	22245497	+	ENST00000397802	C263	m5C	C6	5'-GGGCCCCGACCUCUCCUGACUGGGGCCCGGGGGCUCAUCGGG-3'	(((((((..((((........))))....)))))))...... (-19.90)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	42	chr8:22245492-22245533	POLR3D	HGNC:1080	ENSG00000168495	GGGCCCCGACCUCUCCUGACUGGGGCCCGGGGGCUCAUCGGG
hsa_m5C_5392	chr8	22245497	22245498	+	ENST00000397802	C264	m5C	C7	5'-GGGCCCCGACCUCUCCUGACUGGGGCCCGGGGGCUCAUCGGG-3'	(((((((..((((........))))....)))))))...... (-19.90)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	42	chr8:22245492-22245533	POLR3D	HGNC:1080	ENSG00000168495	GGGCCCCGACCUCUCCUGACUGGGGCCCGGGGGCUCAUCGGG
hsa_m5C_5393	chr8	22245516	22245517	+	ENST00000397802	C283	m5C	C26	5'-GGGCCCCGACCUCUCCUGACUGGGGCCCGGGGGCUCAUCGGG-3'	(((((((..((((........))))....)))))))...... (-19.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	42	chr8:22245492-22245533	POLR3D	HGNC:1080	ENSG00000168495	GGGCCCCGACCUCUCCUGACUGGGGCCCGGGGGCUCAUCGGG
hsa_m5C_5394	chr8	22245517	22245518	+	ENST00000397802	C284	m5C	C27	5'-GGGCCCCGACCUCUCCUGACUGGGGCCCGGGGGCUCAUCGGG-3'	(((((((..((((........))))....)))))))...... (-19.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	42	chr8:22245492-22245533	POLR3D	HGNC:1080	ENSG00000168495	GGGCCCCGACCUCUCCUGACUGGGGCCCGGGGGCUCAUCGGG
hsa_m5C_5395	chr8	22245518	22245519	+	ENST00000397802	C285	m5C	C28	5'-GGGCCCCGACCUCUCCUGACUGGGGCCCGGGGGCUCAUCGGG-3'	(((((((..((((........))))....)))))))...... (-19.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	42	chr8:22245492-22245533	POLR3D	HGNC:1080	ENSG00000168495	GGGCCCCGACCUCUCCUGACUGGGGCCCGGGGGCUCAUCGGG
hsa_m5C_5396	chr11	2130777	2130778	-	ENST00000416167	C3919	m5C	C16	5'-GGGGUGGGUGGGGGGCAGUGGGGGCUGGGCGGGG-3'	...............((((....))))....... ( -3.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	34	chr11:2130760-2130793	IGF2	HGNC:5466	ENSG00000167244	GGGGUGGGUGGGGGGCAGUGGGGGCUGGGCGGGG
hsa_m5C_5397	chr11	2130768	2130769	-	ENST00000416167	C3928	m5C	C25	5'-GGGGUGGGUGGGGGGCAGUGGGGGCUGGGCGGGG-3'	...............((((....))))....... ( -3.60)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	34	chr11:2130760-2130793	IGF2	HGNC:5466	ENSG00000167244	GGGGUGGGUGGGGGGCAGUGGGGGCUGGGCGGGG
hsa_m5C_5398	chr11	2130763	2130764	-	ENST00000416167	C3933	m5C	C30	5'-GGGGUGGGUGGGGGGCAGUGGGGGCUGGGCGGGG-3'	...............((((....))))....... ( -3.60)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	34	chr11:2130760-2130793	IGF2	HGNC:5466	ENSG00000167244	GGGGUGGGUGGGGGGCAGUGGGGGCUGGGCGGGG
hsa_m5C_5399	chr11	2130014	2130015	-	ENST00000416167	C4682	m5C	C8	5'-GGGACCUCUUGGGGGCAAGGUGGGGUGAGGCCGGGG-3'	....(((((((....))))).))(((...))).... ( -7.90)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	36	chr11:2129987-2130022	IGF2	HGNC:5466	ENSG00000167244	GGGACCUCUUGGGGGCAAGGUGGGGUGAGGCCGGGG
hsa_m5C_5400	chr11	2130006	2130007	-	ENST00000416167	C4690	m5C	C16	5'-GGGACCUCUUGGGGGCAAGGUGGGGUGAGGCCGGGG-3'	....(((((((....))))).))(((...))).... ( -7.90)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	36	chr11:2129987-2130022	IGF2	HGNC:5466	ENSG00000167244	GGGACCUCUUGGGGGCAAGGUGGGGUGAGGCCGGGG
hsa_m5C_5401	chr8	42541970	42541971	+	ENST00000417410	C387	m5C	C14	5'-GGGGCGGCGGGGGCUCGGCGGGAGGG-3'	.((((.......)))).......... ( -5.00)	loop	mRNA	T24;NA;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	26	chr8:42541958-42541983	SMIM19	HGNC:25166	ENSG00000176209	GGGGCGGCGGGGGCUCGGCGGGAGGG
hsa_m5C_5402	chr8	42541972	42541973	+	ENST00000417410	C389	m5C	C16	5'-GGGGCGGCGGGGGCUCGGCGGGAGGG-3'	.((((.......)))).......... ( -5.00)	loop	mRNA	NA;HeLa,With in vitro transcribed m5C spike-ins;HeLa,siCTRL;HeLa	RNA-BisSeq:(High);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	26	chr8:42541958-42541983	SMIM19	HGNC:25166	ENSG00000176209	GGGGCGGCGGGGGCUCGGCGGGAGGG
hsa_m5C_5403	chr1	999091	999092	-	ENST00000428771	C910	m5C	C17	5'-GGGCGGGGCCGCAGGGCCCGGG-3'	.....(((((....)))))... (-11.70)	loop	mRNA	NA;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	22	chr1:999087-999108	HES4	HGNC:24149	ENSG00000188290	GGGCGGGGCCGCAGGGCCCGGG
hsa_m5C_5404	chr1	999090	999091	-	ENST00000428771	C911	m5C	C18	5'-GGGCGGGGCCGCAGGGCCCGGG-3'	.....(((((....)))))... (-11.70)	loop	mRNA	NA;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	22	chr1:999087-999108	HES4	HGNC:24149	ENSG00000188290	GGGCGGGGCCGCAGGGCCCGGG
hsa_m5C_5405	chr1	999089	999090	-	ENST00000428771	C912	m5C	C19	5'-GGGCGGGGCCGCAGGGCCCGGG-3'	.....(((((....)))))... (-11.70)	loop	mRNA	NA;HeLa	RNA-BisSeq:(High);RBS-Seq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	30872485	22	chr1:999087-999108	HES4	HGNC:24149	ENSG00000188290	GGGCGGGGCCGCAGGGCCCGGG
hsa_m5C_5406	chr2	73112683	73112684	-	ENST00000486777	C265	m5C	C15	5'-GGGCCCGCGGGCUGCGGGGCAAGAGCUCGGG-3'	.((((....))))...((((....))))... (-10.00)	loop	mRNA	HeLa,With in vitro transcribed m5C spike-ins;frontal cortex;HeLa,siCTRL;T24;Testis;spleen;NA;HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	m5C-RIP-seq:(Medium);RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038;31061524	31	chr2:73112668-73112698	RAB11FIP5	HGNC:24845	ENSG00000135631	GGGCCCGCGGGCUGCGGGGCAAGAGCUCGGG
hsa_m5C_5407	chr8	66613034	66613035	-	ENST00000522677	C184	m5C	C5	5'-GGGCCGGGGUCGGGGUCGGG-3'	.((((........))))... ( -5.80)	loop	mRNA	T24;NA;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMBase database;m6A-Atlas database;RMVar database	31358969;28418038	20	chr8:66613020-66613039	MYBL1	HGNC:7547	ENSG00000185697	GGGCCGGGGUCGGGGUCGGG
hsa_m5C_5408	chr8	66613028	66613029	-	ENST00000522677	C190	m5C	C11	5'-GGGCCGGGGUCGGGGUCGGG-3'	.((((........))))... ( -5.80)	loop	mRNA	T24;NA	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969;28418038	20	chr8:66613020-66613039	MYBL1	HGNC:7547	ENSG00000185697	GGGCCGGGGUCGGGGUCGGG
hsa_m5C_5409	chr11	65778162	65778163	-	ENST00000532090	C2715	m5C	C6	5'-GGGGGCCGGGCUGGGCUUCUUUGAGGAGCUCUGGG-3'	.....((((....(((((((...))))))))))). (-10.70)	bulge	mRNA	NA;HeLa,rip antibody: ALYREF;HCT116;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database;RMVar database	28418038	35	chr11:65778134-65778168	AP5B1	HGNC:25104	ENSG00000254470	GGGGGCCGGGCUGGGCUUCUUUGAGGAGCUCUGGG
hsa_m5C_5410	chr11	65778161	65778162	-	ENST00000532090	C2716	m5C	C7	5'-GGGGGCCGGGCUGGGCUUCUUUGAGGAGCUCUGGG-3'	.....((((....(((((((...))))))))))). (-10.70)	bulge	mRNA	NA;HeLa,rip antibody: ALYREF;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	35	chr11:65778134-65778168	AP5B1	HGNC:25104	ENSG00000254470	GGGGGCCGGGCUGGGCUUCUUUGAGGAGCUCUGGG
hsa_m5C_5411	chr11	66687616	66687617	-	ENST00000533211	C7121	m5C	C32	5'-G^GGACCUGGCUCAGGGGACGAAGCCAAUGGGCCCCGGGG-3'	....(((((((((..((......))..))))))..))). (-15.50)	loop	mRNA	HeLa,siCTRL;T24;NA;HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	39	chr11:66687610-66687647;66687868-66687868	SPTBN2	HGNC:11276	ENSG00000173898	GGGACCUGGCUCAGGGGACGAAGCCAAUGGGCCCCGGGG
hsa_m5C_5412	chr11	66687615	66687616	-	ENST00000533211	C7122	m5C	C33	5'-G^GGACCUGGCUCAGGGGACGAAGCCAAUGGGCCCCGGGG-3'	....(((((((((..((......))..))))))..))). (-15.50)	loop	mRNA	HeLa,siCTRL;T24;NA;HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	39	chr11:66687610-66687647;66687868-66687868	SPTBN2	HGNC:11276	ENSG00000173898	GGGACCUGGCUCAGGGGACGAAGCCAAUGGGCCCCGGGG
hsa_m5C_5413	chr11	66687614	66687615	-	ENST00000533211	C7123	m5C	C34	5'-G^GGACCUGGCUCAGGGGACGAAGCCAAUGGGCCCCGGGG-3'	....(((((((((..((......))..))))))..))). (-15.50)	loop	mRNA	T24;NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	39	chr11:66687610-66687647;66687868-66687868	SPTBN2	HGNC:11276	ENSG00000173898	GGGACCUGGCUCAGGGGACGAAGCCAAUGGGCCCCGGGG
hsa_m5C_5414	chr11	66687613	66687614	-	ENST00000533211	C7124	m5C	C35	5'-G^GGACCUGGCUCAGGGGACGAAGCCAAUGGGCCCCGGGG-3'	....(((((((((..((......))..))))))..))). (-15.50)	loop	mRNA	HeLa,siCTRL;T24;NA;HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database;RMVar database	28418038	39	chr11:66687610-66687647;66687868-66687868	SPTBN2	HGNC:11276	ENSG00000173898	GGGACCUGGCUCAGGGGACGAAGCCAAUGGGCCCCGGGG
hsa_m5C_5415	chr16	1979359	1979360	+	ENST00000568546	C3214	m5C	C5	5'-GGGGCGGGGUGUGGUUAGGG-3'	..(((........))).... ( -0.50)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	20	chr16:1979356-1979375	TBL3	HGNC:11587	ENSG00000183751	GGGGCGGGGUGUGGUUAGGG
hsa_m5C_5416	chr16	2756357	2756358	+	ENST00000576924	C254	m5C	C6	5'-GGGCACGGGGCCAUGUACAACGGGAUCGGG-3'	.(((.....))).................. ( -3.80)	loop	mRNA	NA;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;RMVar database	28418038	30	chr16:2756353-2756382	SRRM2	HGNC:16639	ENSG00000167978	GGGCACGGGGCCAUGUACAACGGGAUCGGG
hsa_m5C_5417	chr19	13795715	13795716	+	ENST00000590508	C274	m5C	C40	5'-GGGGCUGCCCCGCGGGACCCGAGGAGCGCGAUGCCGGGGCCGGGG-3'	((((...)))).(((..((((....((.....)))))).)))... (-16.80)	loop	mRNA	T24;NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	45	chr19:13795677-13795721	ZSWIM4	HGNC:25704	ENSG00000132003	GGGGCUGCCCCGCGGGACCCGAGGAGCGCGAUGCCGGGGCCGGGG
hsa_m5C_5418	chr19	13795716	13795717	+	ENST00000590508	C275	m5C	C41	5'-GGGGCUGCCCCGCGGGACCCGAGGAGCGCGAUGCCGGGGCCGGGG-3'	((((...)))).(((..((((....((.....)))))).)))... (-16.80)	loop	mRNA	T24;NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	45	chr19:13795677-13795721	ZSWIM4	HGNC:25704	ENSG00000132003	GGGGCUGCCCCGCGGGACCCGAGGAGCGCGAUGCCGGGGCCGGGG
hsa_m5C_5419	chr19	38870719	38870720	-	ENST00000591812	C957	m5C	C30	5'-GGGUGCGCAUCGCCUCAGAUUCUGGGGGUCCCCACGGGUCUGGGG-3'	............((((((((((((((....)))).)))))))))) (-20.00)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	45	chr19:38870705-38870749	RINL	HGNC:24795	ENSG00000187994	GGGUGCGCAUCGCCUCAGAUUCUGGGGGUCCCCACGGGUCUGGGG
hsa_m5C_5420	chr19	38870718	38870719	-	ENST00000591812	C958	m5C	C31	5'-GGGUGCGCAUCGCCUCAGAUUCUGGGGGUCCCCACGGGUCUGGGG-3'	............((((((((((((((....)))).)))))))))) (-20.00)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	45	chr19:38870705-38870749	RINL	HGNC:24795	ENSG00000187994	GGGUGCGCAUCGCCUCAGAUUCUGGGGGUCCCCACGGGUCUGGGG
hsa_m5C_5421	chr19	38870717	38870718	-	ENST00000591812	C959	m5C	C32	5'-GGGUGCGCAUCGCCUCAGAUUCUGGGGGUCCCCACGGGUCUGGGG-3'	............((((((((((((((....)))).)))))))))) (-20.00)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	45	chr19:38870705-38870749	RINL	HGNC:24795	ENSG00000187994	GGGUGCGCAUCGCCUCAGAUUCUGGGGGUCCCCACGGGUCUGGGG
hsa_m5C_5422	chr19	38870716	38870717	-	ENST00000591812	C960	m5C	C33	5'-GGGUGCGCAUCGCCUCAGAUUCUGGGGGUCCCCACGGGUCUGGGG-3'	............((((((((((((((....)))).)))))))))) (-20.00)	bulge	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	45	chr19:38870705-38870749	RINL	HGNC:24795	ENSG00000187994	GGGUGCGCAUCGCCUCAGAUUCUGGGGGUCCCCACGGGUCUGGGG
hsa_m5C_5423	chr17	38453814	38453815	+	ENST00000616767	C126	m5C	C17	5'-GGGGGGCGGGCGGGGACCCCCGGGGCCCGCCGGCCGCCCGGGG-3'	(((.(((.((((((..((...))..)))))).))).))).... (-33.10)	loop	mRNA	NA;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	43	chr17:38453799-38453841	ARHGAP23	HGNC:29293	ENSG00000275832	GGGGGGCGGGCGGGGACCCCCGGGGCCCGCCGGCCGCCCGGGG
hsa_m5C_5424	chr17	38453815	38453816	+	ENST00000616767	C127	m5C	C18	5'-GGGGGGCGGGCGGGGACCCCCGGGGCCCGCCGGCCGCCCGGGG-3'	(((.(((.((((((..((...))..)))))).))).))).... (-33.10)	loop	mRNA	NA;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	43	chr17:38453799-38453841	ARHGAP23	HGNC:29293	ENSG00000275832	GGGGGGCGGGCGGGGACCCCCGGGGCCCGCCGGCCGCCCGGGG
hsa_m5C_5425	chr17	38453816	38453817	+	ENST00000616767	C128	m5C	C19	5'-GGGGGGCGGGCGGGGACCCCCGGGGCCCGCCGGCCGCCCGGGG-3'	(((.(((.((((((..((...))..)))))).))).))).... (-33.10)	loop	mRNA	NA;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	43	chr17:38453799-38453841	ARHGAP23	HGNC:29293	ENSG00000275832	GGGGGGCGGGCGGGGACCCCCGGGGCCCGCCGGCCGCCCGGGG
hsa_m5C_5426	chr17	38453817	38453818	+	ENST00000616767	C129	m5C	C20	5'-GGGGGGCGGGCGGGGACCCCCGGGGCCCGCCGGCCGCCCGGGG-3'	(((.(((.((((((..((...))..)))))).))).))).... (-33.10)	loop	mRNA	NA;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	43	chr17:38453799-38453841	ARHGAP23	HGNC:29293	ENSG00000275832	GGGGGGCGGGCGGGGACCCCCGGGGCCCGCCGGCCGCCCGGGG
hsa_m5C_5427	chr17	38453818	38453819	+	ENST00000616767	C130	m5C	C21	5'-GGGGGGCGGGCGGGGACCCCCGGGGCCCGCCGGCCGCCCGGGG-3'	(((.(((.((((((..((...))..)))))).))).))).... (-33.10)	loop	mRNA	NA	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	43	chr17:38453799-38453841	ARHGAP23	HGNC:29293	ENSG00000275832	GGGGGGCGGGCGGGGACCCCCGGGGCCCGCCGGCCGCCCGGGG
hsa_m5C_5428	chr17	38454018	38454019	+	ENST00000616767	C330	m5C	C6	5'-GGGGGCCGGGGGCUGGCGCUGGG-3'	.((.(((((...))))).))... ( -9.40)	loop	mRNA	NA	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	23	chr17:38454014-38454036	ARHGAP23	HGNC:29293	ENSG00000275832	GGGGGCCGGGGGCUGGCGCUGGG
hsa_m5C_5429	chr17	38454019	38454020	+	ENST00000616767	C331	m5C	C7	5'-GGGGGCCGGGGGCUGGCGCUGGG-3'	.((.(((((...))))).))... ( -9.40)	loop	mRNA	NA	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database	28418038	23	chr17:38454014-38454036	ARHGAP23	HGNC:29293	ENSG00000275832	GGGGGCCGGGGGCUGGCGCUGGG
hsa_m5C_5430	chr15	90882044	90882045	+	ENST00000618099	C2932	m5C	C4	5'-GGGCCCAGGACCAGCUGGGGCGUGGGGAGGG-3'	...(((((......)))))............ ( -9.00)	loop	mRNA	T24;NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	31	chr15:90882042-90882072	FURIN	HGNC:8568	ENSG00000140564	GGGCCCAGGACCAGCUGGGGCGUGGGGAGGG
hsa_m5C_5431	chr15	90882045	90882046	+	ENST00000618099	C2933	m5C	C5	5'-GGGCCCAGGACCAGCUGGGGCGUGGGGAGGG-3'	...(((((......)))))............ ( -9.00)	loop	mRNA	T24;NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	31	chr15:90882042-90882072	FURIN	HGNC:8568	ENSG00000140564	GGGCCCAGGACCAGCUGGGGCGUGGGGAGGG
hsa_m5C_5432	chr15	90882046	90882047	+	ENST00000618099	C2934	m5C	C6	5'-GGGCCCAGGACCAGCUGGGGCGUGGGGAGGG-3'	...(((((......)))))............ ( -9.00)	loop	mRNA	T24;NA;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	28418038	31	chr15:90882042-90882072	FURIN	HGNC:8568	ENSG00000140564	GGGCCCAGGACCAGCUGGGGCGUGGGGAGGG
hsa_m5C_5433	chr17	38674854	38674855	-	ENST00000621654	C103	m5C	C18	5'-GGGCACCGGGUGCCGGGCCCGGGG-3'	((((.((((...)))))))).... (-14.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	24	chr17:38674849-38674872	EPOP	HGNC:34493	ENSG00000273604	GGGCACCGGGUGCCGGGCCCGGGG
hsa_m5C_5434	chr17	38674853	38674854	-	ENST00000621654	C104	m5C	C19	5'-GGGCACCGGGUGCCGGGCCCGGGG-3'	((((.((((...)))))))).... (-14.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	24	chr17:38674849-38674872	EPOP	HGNC:34493	ENSG00000273604	GGGCACCGGGUGCCGGGCCCGGGG
hsa_m5C_5435	chr17	38674852	38674853	-	ENST00000621654	C105	m5C	C20	5'-GGGCACCGGGUGCCGGGCCCGGGG-3'	((((.((((...)))))))).... (-14.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	24	chr17:38674849-38674872	EPOP	HGNC:34493	ENSG00000273604	GGGCACCGGGUGCCGGGCCCGGGG
hsa_m5C_5436	chr17	38674324	38674325	-	ENST00000621654	C633	m5C	C17	5'-GGGCGUCCUCUCUGGGCCCGGGGCCUGGGG-3'	((....)).(((((((((...))))))))) (-12.60)	loop	mRNA	NA;HeLa,rip antibody: ALYREF;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	30	chr17:38674312-38674341	EPOP	HGNC:34493	ENSG00000273604	GGGCGUCCUCUCUGGGCCCGGGGCCUGGGG
hsa_m5C_5437	chr17	38674323	38674324	-	ENST00000621654	C634	m5C	C18	5'-GGGCGUCCUCUCUGGGCCCGGGGCCUGGGG-3'	((....)).(((((((((...))))))))) (-12.60)	loop	mRNA	NA	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	28418038	30	chr17:38674312-38674341	EPOP	HGNC:34493	ENSG00000273604	GGGCGUCCUCUCUGGGCCCGGGGCCUGGGG
hsa_m5C_5438	chr17	38674322	38674323	-	ENST00000621654	C635	m5C	C19	5'-GGGCGUCCUCUCUGGGCCCGGGGCCUGGGG-3'	((....)).(((((((((...))))))))) (-12.60)	loop	mRNA	T24;HeLa,rip antibody: ALYREF;NA;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;RMVar database	28418038	30	chr17:38674312-38674341	EPOP	HGNC:34493	ENSG00000273604	GGGCGUCCUCUCUGGGCCCGGGGCCUGGGG
hsa_m5C_5439	chr17	38674859	38674860	-	ENST00000621654	C98	m5C	C13	5'-GGGCACCGGGUGCCGGGCCCGGGG-3'	((((.((((...)))))))).... (-14.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	24	chr17:38674849-38674872	EPOP	HGNC:34493	ENSG00000273604	GGGCACCGGGUGCCGGGCCCGGGG
hsa_m5C_5440	chr17	38674858	38674859	-	ENST00000621654	C99	m5C	C14	5'-GGGCACCGGGUGCCGGGCCCGGGG-3'	((((.((((...)))))))).... (-14.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database	31358969	24	chr17:38674849-38674872	EPOP	HGNC:34493	ENSG00000273604	GGGCACCGGGUGCCGGGCCCGGGG
hsa_m5C_5441	chr8	144466382	144466383	+	ENST00000645548	C47	m5C	C32	5'-GGGCGCCGAGUCUGGGCGCGGGGACGCGGGGCGGCGCGAAGCGGG-3'	..(((((..((((...((((....)))))))))))))........ (-18.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	45	chr8:144466352-144466396	KIFC2	HGNC:29530	ENSG00000167702	GGGCGCCGAGUCUGGGCGCGGGGACGCGGGGCGGCGCGAAGCGGG
hsa_m5C_5442	chr8	144466385	144466386	+	ENST00000645548	C50	m5C	C35	5'-GGGCGCCGAGUCUGGGCGCGGGGACGCGGGGCGGCGCGAAGCGGG-3'	..(((((..((((...((((....)))))))))))))........ (-18.80)	loop	mRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMBase database;m6A-Atlas database	31358969	45	chr8:144466352-144466396	KIFC2	HGNC:29530	ENSG00000167702	GGGCGCCGAGUCUGGGCGCGGGGACGCGGGGCGGCGCGAAGCGGG
hsa_m5C_5443	chr19	18149505	18149506	+	ENST00000697702	C4053	m5C	C30	5'-GGGCACAGGGGAGCGGCUGGAUGGGGAGGCGGG-3'	.............((.((........)).)).. ( -4.20)	bulge	mRNA	T24;Testis	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMBase database;m6A-Atlas database	31358969	33	chr19:18149477-18149509	MAST3	HGNC:19036	ENSG00000099308	GGGCACAGGGGAGCGGCUGGAUGGGGAGGCGGG
hsa_m5C_5444	chr22	45672188	45672189	+	ENST00000623075	C15171	m5C	C5	5'-GGGUCCGGCCGGGGGGCUGCCCCGGGCAGGGGAGGG-3'	...(((.(((.((((....)))).))).)))..... (-19.20)	bulge	lncRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	36	chr22:45672185-45672220	NA	NA	ENSG00000280383	GGGUCCGGCCGGGGGGCUGCCCCGGGCAGGGGAGGG
hsa_m5C_5445	chr22	45672189	45672190	+	ENST00000623075	C15172	m5C	C6	5'-GGGUCCGGCCGGGGGGCUGCCCCGGGCAGGGGAGGG-3'	...(((.(((.((((....)))).))).)))..... (-19.20)	bulge	lncRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	36	chr22:45672185-45672220	NA	NA	ENSG00000280383	GGGUCCGGCCGGGGGGCUGCCCCGGGCAGGGGAGGG
hsa_m5C_5446	chr22	45672192	45672193	+	ENST00000623075	C15175	m5C	C9	5'-GGGUCCGGCCGGGGGGCUGCCCCGGGCAGGGGAGGG-3'	...(((.(((.((((....)))).))).)))..... (-19.20)	loop	lncRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	36	chr22:45672185-45672220	NA	NA	ENSG00000280383	GGGUCCGGCCGGGGGGCUGCCCCGGGCAGGGGAGGG
hsa_m5C_5447	chr22	45672193	45672194	+	ENST00000623075	C15176	m5C	C10	5'-GGGUCCGGCCGGGGGGCUGCCCCGGGCAGGGGAGGG-3'	...(((.(((.((((....)))).))).)))..... (-19.20)	loop	lncRNA	T24	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMBase database;m6A-Atlas database	31358969	36	chr22:45672185-45672220	NA	NA	ENSG00000280383	GGGUCCGGCCGGGGGGCUGCCCCGGGCAGGGGAGGG
hsa_m5C_5448	chr16	1351776	1351777	-	ENST00000007390	C102	m5C	C26	5'-GGGCCGCAGGAGGGCAGCGCGCGGGCCGGGGG-3'	((.((((.............)))).))..... (-11.10)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	32	chr16:1351771-1351802	TSR3	HGNC:14175	ENSG00000007520	GGGCCGCAGGAGGGCAGCGCGCGGGCCGGGGG
hsa_m5C_5449	chr16	1351775	1351776	-	ENST00000007390	C103	m5C	C27	5'-GGGCCGCAGGAGGGCAGCGCGCGGGCCGGGGG-3'	((.((((.............)))).))..... (-11.10)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	32	chr16:1351771-1351802	TSR3	HGNC:14175	ENSG00000007520	GGGCCGCAGGAGGGCAGCGCGCGGGCCGGGGG
hsa_m5C_5450	chr20	33443569	33443570	-	ENST00000217381	C194	m5C	C21	5'-GGGCUGCUGGAGCUGCGCGCCGGGGCGGGCUCGGGGG-3'	......((.(((((.(((......)))))))).)).. (-15.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	37	chr20:33443554-33443590	SNTA1	HGNC:11167	ENSG00000101400	GGGCUGCUGGAGCUGCGCGCCGGGGCGGGCUCGGGGG
hsa_m5C_5451	chr20	33443558	33443559	-	ENST00000217381	C205	m5C	C32	5'-GGGCUGCUGGAGCUGCGCGCCGGGGCGGGCUCGGGGG-3'	......((.(((((.(((......)))))))).)).. (-15.40)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	37	chr20:33443554-33443590	SNTA1	HGNC:11167	ENSG00000101400	GGGCUGCUGGAGCUGCGCGCCGGGGCGGGCUCGGGGG
hsa_m5C_5452	chr19	47072061	47072062	-	ENST00000253048	C1924	m5C	C20	5'-GGGCCCAACAUGGGACCCCCAGGGCCAAUGGG-3'	.(((((....((((...)))))))))...... (-13.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	32	chr19:47072050-47072081	ZC3H4	HGNC:17808	ENSG00000130749	GGGCCCAACAUGGGACCCCCAGGGCCAAUGGG
hsa_m5C_5453	chr19	47072055	47072056	-	ENST00000253048	C1930	m5C	C26	5'-GGGCCCAACAUGGGACCCCCAGGGCCAAUGGG-3'	.(((((....((((...)))))))))...... (-13.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	32	chr19:47072050-47072081	ZC3H4	HGNC:17808	ENSG00000130749	GGGCCCAACAUGGGACCCCCAGGGCCAAUGGG
hsa_m5C_5454	chr14	93115890	93115891	-	ENST00000267615	C35	m5C	C19	5'-GGGCUCAAGCGGGGCGGCCGGGCCAGCGCGGG-3'	.(((((..((......)).)))))........ ( -9.80)	bulge	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	m5C-RIP-seq:(Medium);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	31061524	32	chr14:93115878-93115909	ITPK1	HGNC:6177	ENSG00000100605	GGGCUCAAGCGGGGCGGCCGGGCCAGCGCGGG
hsa_m5C_5455	chr3	49414952	49414953	+	ENST00000273590	C407	m5C	C11	5'-GGGACAACUGCCGGGGGUUCAGGGUUGGUAGCAGGG-3'	.......(((((((..........)))))))..... ( -6.50)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa,siCTRL	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	36	chr3:49414943-49414978	TCTA	HGNC:11692	ENSG00000145022	GGGACAACUGCCGGGGGUUCAGGGUUGGUAGCAGGG
hsa_m5C_5456	chr5	181204947	181204948	-	ENST00000274773	C249	m5C	C4	5'-GGGCGCUGCUGGGAGCGCCCGGGCGCGGGG-3'	(((((((......))))))).......... (-15.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr5:181204922-181204951	TRIM7	HGNC:16278	ENSG00000146054	GGGCGCUGCUGGGAGCGCCCGGGCGCGGGG
hsa_m5C_5457	chr5	181204945	181204946	-	ENST00000274773	C251	m5C	C6	5'-GGGCGCUGCUGGGAGCGCCCGGGCGCGGGG-3'	(((((((......))))))).......... (-15.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr5:181204922-181204951	TRIM7	HGNC:16278	ENSG00000146054	GGGCGCUGCUGGGAGCGCCCGGGCGCGGGG
hsa_m5C_5458	chr5	181204935	181204936	-	ENST00000274773	C261	m5C	C16	5'-GGGCGCUGCUGGGAGCGCCCGGGCGCGGGG-3'	(((((((......))))))).......... (-15.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr5:181204922-181204951	TRIM7	HGNC:16278	ENSG00000146054	GGGCGCUGCUGGGAGCGCCCGGGCGCGGGG
hsa_m5C_5459	chr5	181204933	181204934	-	ENST00000274773	C263	m5C	C18	5'-GGGCGCUGCUGGGAGCGCCCGGGCGCGGGG-3'	(((((((......))))))).......... (-15.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr5:181204922-181204951	TRIM7	HGNC:16278	ENSG00000146054	GGGCGCUGCUGGGAGCGCCCGGGCGCGGGG
hsa_m5C_5460	chr5	181204932	181204933	-	ENST00000274773	C264	m5C	C19	5'-GGGCGCUGCUGGGAGCGCCCGGGCGCGGGG-3'	(((((((......))))))).......... (-15.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	30	chr5:181204922-181204951	TRIM7	HGNC:16278	ENSG00000146054	GGGCGCUGCUGGGAGCGCCCGGGCGCGGGG
hsa_m5C_5461	chr19	4445292	4445293	-	ENST00000301281	C1628	m5C	C25	5'-GGGGGCUGUGGGGAUGCGCCCAAGCCCCCGAGGGAGAGGCCUGGG-3'	(((((((.((((......))))))))))).(((......)))... (-25.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr19:4445273-4445317	UBXN6	HGNC:14928	ENSG00000167671	GGGGGCUGUGGGGAUGCGCCCAAGCCCCCGAGGGAGAGGCCUGGG
hsa_m5C_5462	chr19	4445291	4445292	-	ENST00000301281	C1629	m5C	C26	5'-GGGGGCUGUGGGGAUGCGCCCAAGCCCCCGAGGGAGAGGCCUGGG-3'	(((((((.((((......))))))))))).(((......)))... (-25.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr19:4445273-4445317	UBXN6	HGNC:14928	ENSG00000167671	GGGGGCUGUGGGGAUGCGCCCAAGCCCCCGAGGGAGAGGCCUGGG
hsa_m5C_5463	chr19	4445288	4445289	-	ENST00000301281	C1632	m5C	C29	5'-GGGGGCUGUGGGGAUGCGCCCAAGCCCCCGAGGGAGAGGCCUGGG-3'	(((((((.((((......))))))))))).(((......)))... (-25.90)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr19:4445273-4445317	UBXN6	HGNC:14928	ENSG00000167671	GGGGGCUGUGGGGAUGCGCCCAAGCCCCCGAGGGAGAGGCCUGGG
hsa_m5C_5464	chr19	7293876	7293877	-	ENST00000302850	C538	m5C	C13	5'-GGCCACCGGGGGCCGGCGGGGGG-3'	..((.((((...)))).)).... ( -8.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	23	chr19:7293867-7293889	INSR	HGNC:6091	ENSG00000171105	GGCCACCGGGGGCCGGCGGGGGG
hsa_m5C_5465	chr19	7293872	7293873	-	ENST00000302850	C542	m5C	C17	5'-GGCCACCGGGGGCCGGCGGGGGG-3'	..((.((((...)))).)).... ( -8.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	23	chr19:7293867-7293889	INSR	HGNC:6091	ENSG00000171105	GGCCACCGGGGGCCGGCGGGGGG
hsa_m5C_5466	chr2	235494628	235494629	+	ENST00000304032	C587	m5C	C6	5'-GGGCCCCGGGGCGCGGGGCGGCGGCGGCGGG-3'	..((((((.....)))))).((....))... (-15.60)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	31	chr2:235494624-235494654	AGAP1	HGNC:16922	ENSG00000157985	GGGCCCCGGGGCGCGGGGCGGCGGCGGCGGG
hsa_m5C_5467	chr2	232486566	232486567	-	ENST00000304546	C304	m5C	C13	5'-GGGGGGCGCGCGCGGGGCCUCCCUGCCCCCGGGCUUCCCGUUGGG-3'	(((((((.((.((((((...))))))...)).)))))))...... (-26.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr2:232486535-232486579	ECEL1	HGNC:3147	ENSG00000171551	GGGGGGCGCGCGCGGGGCCUCCCUGCCCCCGGGCUUCCCGUUGGG
hsa_m5C_5468	chr19	45713035	45713036	-	ENST00000317683	C586	m5C	C19	5'-GGGGGCCGGGAGGGCCCCCCUGCUGCUGAGGAGGG-3'	.((((((.....))))))(((.((....)).))). (-20.60)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	35	chr19:45713020-45713054	FBXO46	HGNC:25069	ENSG00000177051	GGGGGCCGGGAGGGCCCCCCUGCUGCUGAGGAGGG
hsa_m5C_5469	chr5	1344865	1344866	-	ENST00000320895	C234	m5C	C5	5'-GGGCCGGGGGCGCCGGGCGCGGGG-3'	..(((.((....)).)))...... ( -9.60)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	24	chr5:1344847-1344870	CLPTM1L	HGNC:24308	ENSG00000049656	GGGCCGGGGGCGCCGGGCGCGGGG
hsa_m5C_5470	chr5	1344856	1344857	-	ENST00000320895	C243	m5C	C14	5'-GGGCCGGGGGCGCCGGGCGCGGGG-3'	..(((.((....)).)))...... ( -9.60)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	24	chr5:1344847-1344870	CLPTM1L	HGNC:24308	ENSG00000049656	GGGCCGGGGGCGCCGGGCGCGGGG
hsa_m5C_5471	chr5	1344852	1344853	-	ENST00000320895	C247	m5C	C18	5'-GGGCCGGGGGCGCCGGGCGCGGGG-3'	..(((.((....)).)))...... ( -9.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	24	chr5:1344847-1344870	CLPTM1L	HGNC:24308	ENSG00000049656	GGGCCGGGGGCGCCGGGCGCGGGG
hsa_m5C_5472	chr7	30285470	30285471	+	ENST00000323037	C875	m5C	C18	5'-GGGACCGCGGGCGGCGGCGGGGGCGCUCGGG-3'	....((.(((((.((.......))))))))) (-11.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	31	chr7:30285454-30285484	ZNRF2	HGNC:22316	ENSG00000180233	GGGACCGCGGGCGGCGGCGGGGGCGCUCGGG
hsa_m5C_5473	chr11	118899176	118899177	-	ENST00000334801	C4703	m5C	C12	5'-GGGGGUGGGGGCGGGGGG-3'	NA	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	18	chr11:118899171-118899188	BCL9L	HGNC:23688	ENSG00000186174	GGGGGUGGGGGCGGGGGG
hsa_m5C_5474	chr12	49797069	49797070	-	ENST00000335999	C980	m5C	C21	5'-GGGAGCGCCUCUUGGGGGGUCUGGGAGGGGAAGAGGACACUGGG-3'	.......((((((((.....))))))))................ ( -9.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	44	chr12:49797047-49797090	NCKAP5L	HGNC:29321	ENSG00000167566	GGGAGCGCCUCUUGGGGGGUCUGGGAGGGGAAGAGGACACUGGG
hsa_m5C_5475	chr20	58692867	58692868	+	ENST00000356091	C69	m5C	C14	5'-GGGCCGGGCCGGGCCGGG-3'	.((((......))))... ( -8.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;RNAfold:(Medium)	RMVar database	28418038	18	chr20:58692855-58692872	NPEPL1	HGNC:16244	ENSG00000215440	GGGCCGGGCCGGGCCGGG
hsa_m5C_5476	chr15	42728655	42728656	-	ENST00000356231	C2826	m5C	C5	5'-GGGGCGGGA^GUUCUGUCAAAGGAAGAGCCCUGGGGCUGUGCGGG-3'	(((((.....((((......))))..)))))............. (-10.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	44	chr15:42728233-42728267;42728652-42728660	CDAN1	HGNC:1713	ENSG00000140326	GGGGCGGGAGUUCUGUCAAAGGAAGAGCCCUGGGGCUGUGCGGG
hsa_m5C_5477	chr15	42728248	42728249	-	ENST00000356231	C2849	m5C	C28	5'-GGGGCGGGA^GUUCUGUCAAAGGAAGAGCCCUGGGGCUGUGCGGG-3'	(((((.....((((......))))..)))))............. (-10.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	44	chr15:42728233-42728267;42728652-42728660	CDAN1	HGNC:1713	ENSG00000140326	GGGGCGGGAGUUCUGUCAAAGGAAGAGCCCUGGGGCUGUGCGGG
hsa_m5C_5478	chr15	42728247	42728248	-	ENST00000356231	C2850	m5C	C29	5'-GGGGCGGGA^GUUCUGUCAAAGGAAGAGCCCUGGGGCUGUGCGGG-3'	(((((.....((((......))))..)))))............. (-10.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	44	chr15:42728233-42728267;42728652-42728660	CDAN1	HGNC:1713	ENSG00000140326	GGGGCGGGAGUUCUGUCAAAGGAAGAGCCCUGGGGCUGUGCGGG
hsa_m5C_5479	chr20	429066	429067	+	ENST00000356286	C1884	m5C	C5	5'-GGGUCACCAAGGGCCCACGCUGGGGCCCUGGG^GG-3'	......((.(((((((......))))))).)).. (-18.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	34	chr20:429063-429094;430350-430351	RBCK1	HGNC:15864	ENSG00000125826	GGGUCACCAAGGGCCCACGCUGGGGCCCUGGGGG
hsa_m5C_5480	chr20	429068	429069	+	ENST00000356286	C1886	m5C	C7	5'-GGGUCACCAAGGGCCCACGCUGGGGCCCUGGG^GG-3'	......((.(((((((......))))))).)).. (-18.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	34	chr20:429063-429094;430350-430351	RBCK1	HGNC:15864	ENSG00000125826	GGGUCACCAAGGGCCCACGCUGGGGCCCUGGGGG
hsa_m5C_5481	chr20	429075	429076	+	ENST00000356286	C1893	m5C	C14	5'-GGGUCACCAAGGGCCCACGCUGGGGCCCUGGG^GG-3'	......((.(((((((......))))))).)).. (-18.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	34	chr20:429063-429094;430350-430351	RBCK1	HGNC:15864	ENSG00000125826	GGGUCACCAAGGGCCCACGCUGGGGCCCUGGGGG
hsa_m5C_5482	chr20	429087	429088	+	ENST00000356286	C1905	m5C	C26	5'-GGGUCACCAAGGGCCCACGCUGGGGCCCUGGG^GG-3'	......((.(((((((......))))))).)).. (-18.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	34	chr20:429063-429094;430350-430351	RBCK1	HGNC:15864	ENSG00000125826	GGGUCACCAAGGGCCCACGCUGGGGCCCUGGGGG
hsa_m5C_5483	chr20	429088	429089	+	ENST00000356286	C1906	m5C	C27	5'-GGGUCACCAAGGGCCCACGCUGGGGCCCUGGG^GG-3'	......((.(((((((......))))))).)).. (-18.40)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	34	chr20:429063-429094;430350-430351	RBCK1	HGNC:15864	ENSG00000125826	GGGUCACCAAGGGCCCACGCUGGGGCCCUGGGGG
hsa_m5C_5484	chr9	136208901	136208902	-	ENST00000358701	C1932	m5C	C12	5'-GGGCCCGGGGCCCACAAGGAGGUGGGCGGGG-3'	...(((...((((((......))))))))). (-15.10)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	31	chr9:136208883-136208913	QSOX2	HGNC:30249	ENSG00000165661	GGGCCCGGGGCCCACAAGGAGGUGGGCGGGG
hsa_m5C_5485	chr9	93678501	93678502	+	ENST00000359246	C4307	m5C	C4	5'-GGGCAGGGGCAGGGGCAGGG-3'	..((....)).......... ( -0.60)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	RMVar database	28418038	20	chr9:93678499-93678518	PHF2	HGNC:8920	ENSG00000197724	GGGCAGGGGCAGGGGCAGGG
hsa_m5C_5486	chr9	130172642	130172643	+	ENST00000372398	C240	m5C	C32	5'-GGGCGCCCCAACCGGGUCCGGCCCGGGGGGGCGGGGG-3'	...((((((..((((((...)))))).)))))).... (-24.90)	loop	mRNA	HeLa,rip antibody: ALYREF;HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038;22344696	37	chr9:130172612-130172648	NCS1	HGNC:3953	ENSG00000107130	GGGCGCCCCAACCGGGUCCGGCCCGGGGGGGCGGGGG
hsa_m5C_5487	chr17	81637006	81637007	-	ENST00000374747	C54	m5C	C28	5'-GGGAGGCCGGGGCCGGGGCUGAGGCCGCGGCCGGG-3'	....(((((.((((........)))).)))))... (-22.80)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	35	chr17:81637000-81637034	NPLOC4	HGNC:18261	ENSG00000182446	GGGAGGCCGGGGCCGGGGCUGAGGCCGCGGCCGGG
hsa_m5C_5488	chr13	109786280	109786281	-	ENST00000375856	C303	m5C	C27	5'-GGGGAGGGGGGCGGCCACCGCCCGCGCCGGG-3'	..((....((((((...))))))...))... (-14.30)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	31	chr13:109786277-109786307	IRS2	HGNC:6126	ENSG00000185950	GGGGAGGGGGGCGGCCACCGCCCGCGCCGGG
hsa_m5C_5489	chr13	109786279	109786280	-	ENST00000375856	C304	m5C	C28	5'-GGGGAGGGGGGCGGCCACCGCCCGCGCCGGG-3'	..((....((((((...))))))...))... (-14.30)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	31	chr13:109786277-109786307	IRS2	HGNC:6126	ENSG00000185950	GGGGAGGGGGGCGGCCACCGCCCGCGCCGGG
hsa_m5C_5490	chr1	11926299	11926300	-	ENST00000376572	C128	m5C	C12	5'-GGGCGGCCGGGCCGGUGGGCUGGG-3'	......((.((((....)))).)) (-10.50)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;rG4-seq:(High)	RMVar database	28418038	24	chr1:11926288-11926311	KIAA2013	HGNC:28513	ENSG00000116685	GGGCGGCCGGGCCGGUGGGCUGGG
hsa_m5C_5491	chr1	8026183	8026184	-	ENST00000377482	C126	m5C	C25	5'-GGGACGGACAUGCGCGGGAGGGCGCCGCGGG-3'	............(((((.......))))).. ( -9.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	31	chr1:8026178-8026208	ERRFI1	HGNC:18185	ENSG00000116285	GGGACGGACAUGCGCGGGAGGGCGCCGCGGG
hsa_m5C_5492	chr3	126475701	126475702	-	ENST00000389709	C190	m5C	C17	5'-GGGCCCGGGGCGCGGCCCGGGGAGGCCUCCGGG-3'	...(((((((.((..((...))..))))))))) (-17.20)	loop	mRNA	Huh7;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	33	chr3:126475686-126475718	ZXDC	HGNC:28160	ENSG00000070476	GGGCCCGGGGCGCGGCCCGGGGAGGCCUCCGGG
hsa_m5C_5493	chr3	126475700	126475701	-	ENST00000389709	C191	m5C	C18	5'-GGGCCCGGGGCGCGGCCCGGGGAGGCCUCCGGG-3'	...(((((((.((..((...))..))))))))) (-17.20)	loop	mRNA	Huh7;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	33	chr3:126475686-126475718	ZXDC	HGNC:28160	ENSG00000070476	GGGCCCGGGGCGCGGCCCGGGGAGGCCUCCGGG
hsa_m5C_5494	chr3	126475688	126475689	-	ENST00000389709	C203	m5C	C30	5'-GGGCCCGGGGCGCGGCCCGGGGAGGCCUCCGGG-3'	...(((((((.((..((...))..))))))))) (-17.20)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	33	chr3:126475686-126475718	ZXDC	HGNC:28160	ENSG00000070476	GGGCCCGGGGCGCGGCCCGGGGAGGCCUCCGGG
hsa_m5C_5495	chr2	28751985	28751986	+	ENST00000395366	C157	m5C	C17	5'-GGGGGUGGGGGGAGGGCCCGGGAAAAGGGGGAGUUGGAGCCGGGG-3'	................(((((....((......))....))))). ( -9.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	45	chr2:28751970-28752014	PPP1CB	HGNC:9282	ENSG00000213639	GGGGGUGGGGGGAGGGCCCGGGAAAAGGGGGAGUUGGAGCCGGGG
hsa_m5C_5496	chr2	28751986	28751987	+	ENST00000395366	C158	m5C	C18	5'-GGGGGUGGGGGGAGGGCCCGGGAAAAGGGGGAGUUGGAGCCGGGG-3'	................(((((....((......))....))))). ( -9.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	45	chr2:28751970-28752014	PPP1CB	HGNC:9282	ENSG00000213639	GGGGGUGGGGGGAGGGCCCGGGAAAAGGGGGAGUUGGAGCCGGGG
hsa_m5C_5497	chr16	705631	705632	-	ENST00000397621	C170	m5C	C25	5'-GGGACGCGGGGCGCAGGGCGCGGCCGGG-3'	......(((.((((...))))..))).. ( -9.80)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	28	chr16:705629-705656	FBXL16	HGNC:14150	ENSG00000127585	GGGACGCGGGGCGCAGGGCGCGGCCGGG
hsa_m5C_5498	chr2	238238979	238238980	-	ENST00000409160	C890	m5C	C32	5'-GGGGCGCUCCGGGAUCCCCAAUACCCAGCCCCCCGGGUCCUGGGG-3'	((((..((...))..))))....((((((((...)))..))))). (-18.10)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr2:238238967-238239011	HES6	HGNC:18254	ENSG00000144485	GGGGCGCUCCGGGAUCCCCAAUACCCAGCCCCCCGGGUCCUGGGG
hsa_m5C_5499	chr2	238238977	238238978	-	ENST00000409160	C892	m5C	C34	5'-GGGGCGCUCCGGGAUCCCCAAUACCCAGCCCCCCGGGUCCUGGGG-3'	((((..((...))..))))....((((((((...)))..))))). (-18.10)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr2:238238967-238239011	HES6	HGNC:18254	ENSG00000144485	GGGGCGCUCCGGGAUCCCCAAUACCCAGCCCCCCGGGUCCUGGGG
hsa_m5C_5500	chr11	63763278	63763279	-	ENST00000433688	C2329	m5C	C4	5'-GGGCCGGGCGGAGACGGGGGAUCGGGUGGG-3'	...(((........)))............. ( -4.10)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	RMVar database	28418038	30	chr11:63763253-63763282	ZFTA	HGNC:28449	ENSG00000188070	GGGCCGGGCGGAGACGGGGGAUCGGGUGGG
hsa_m5C_5501	chr17	81891481	81891482	-	ENST00000505490	C105	m5C	C11	5'-GGGGCGGGGGCCGGGGCCGCGGCCGGGCCGGCUCCCAGGG-3'	.....((((((((((((....)))...))))))))).... (-24.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	40	chr17:81891453-81891492	ALYREF	HGNC:19071	ENSG00000183684	GGGGCGGGGGCCGGGGCCGCGGCCGGGCCGGCUCCCAGGG
hsa_m5C_5502	chr17	81891475	81891476	-	ENST00000505490	C111	m5C	C17	5'-GGGGCGGGGGCCGGGGCCGCGGCCGGGCCGGCUCCCAGGG-3'	.....((((((((((((....)))...))))))))).... (-24.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	40	chr17:81891453-81891492	ALYREF	HGNC:19071	ENSG00000183684	GGGGCGGGGGCCGGGGCCGCGGCCGGGCCGGCUCCCAGGG
hsa_m5C_5503	chr17	81891474	81891475	-	ENST00000505490	C112	m5C	C18	5'-GGGGCGGGGGCCGGGGCCGCGGCCGGGCCGGCUCCCAGGG-3'	.....((((((((((((....)))...))))))))).... (-24.00)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	40	chr17:81891453-81891492	ALYREF	HGNC:19071	ENSG00000183684	GGGGCGGGGGCCGGGGCCGCGGCCGGGCCGGCUCCCAGGG
hsa_m5C_5504	chr11	65778157	65778158	-	ENST00000532090	C2720	m5C	C11	5'-GGGGGCCGGGCUGGGCUUCUUUGAGGAGCUCUGGG-3'	.....((((....(((((((...))))))))))). (-10.70)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	35	chr11:65778134-65778168	AP5B1	HGNC:25104	ENSG00000254470	GGGGGCCGGGCUGGGCUUCUUUGAGGAGCUCUGGG
hsa_m5C_5505	chr16	30651303	30651304	+	ENST00000542965	C115	m5C	C10	5'-GGGGGAUCUCGGGGCAUAAUCUGCAGGGACAAAGGCCUCGGG-3'	.......((((((((....(((....))).....)))))))) (-13.50)	loop	mRNA	HeLa,With in vitro transcribed non-m5C spike-ins;HeLa	m5C-RIP-seq:(Medium);BS-seq-with-improved-protocol:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database;RMVar database	31061524	42	chr16:30651295-30651336	PRR14	HGNC:28458	ENSG00000156858	GGGGGAUCUCGGGGCAUAAUCUGCAGGGACAAAGGCCUCGGG
hsa_m5C_5506	chr19	13795709	13795710	+	ENST00000590508	C268	m5C	C34	5'-GGGGCUGCCCCGCGGGACCCGAGGAGCGCGAUGCCGGGGCCGGGG-3'	((((...)))).(((..((((....((.....)))))).)))... (-16.80)	loop	mRNA	SNB19;HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database;RMVar database	28418038	45	chr19:13795677-13795721	ZSWIM4	HGNC:25704	ENSG00000132003	GGGGCUGCCCCGCGGGACCCGAGGAGCGCGAUGCCGGGGCCGGGG
hsa_m5C_5507	chr19	55483907	55483908	+	ENST00000598519	C2983	m5C	C4	5'-GGGCCCCGGGGAGGCGGGGGAUGGCGAGG-3'	...(((((......))))).......... (-10.50)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr19:55483905-55483933	ZNF628	HGNC:28054	ENSG00000197483	GGGCCCCGGGGAGGCGGGGGAUGGCGAGG
hsa_m5C_5508	chr19	55483908	55483909	+	ENST00000598519	C2984	m5C	C5	5'-GGGCCCCGGGGAGGCGGGGGAUGGCGAGG-3'	...(((((......))))).......... (-10.50)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr19:55483905-55483933	ZNF628	HGNC:28054	ENSG00000197483	GGGCCCCGGGGAGGCGGGGGAUGGCGAGG
hsa_m5C_5509	chr19	55483909	55483910	+	ENST00000598519	C2985	m5C	C6	5'-GGGCCCCGGGGAGGCGGGGGAUGGCGAGG-3'	...(((((......))))).......... (-10.50)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	29	chr19:55483905-55483933	ZNF628	HGNC:28054	ENSG00000197483	GGGCCCCGGGGAGGCGGGGGAUGGCGAGG
hsa_m5C_5510	chr1	46303157	46303158	-	ENST00000617190	C459	m5C	C11	5'-GGGCGGUGAGCGCCCAUAUGGGGGUUCUGGAGAGCGGGGUGUGGG-3'	(((((.....)))))((((....((((....))))...))))... (-14.20)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	45	chr1:46303124-46303168	LRRC41	HGNC:16917	ENSG00000132128	GGGCGGUGAGCGCCCAUAUGGGGGUUCUGGAGAGCGGGGUGUGGG
hsa_m5C_5511	chr17	1464343	1464344	-	ENST00000648651	C4773	m5C	C35	5'-GGGAGCGUGGGGACGGGGCUGGCCUUGGGAGGAGCGGCAGGG-3'	.....(((....)))..((((.(((....)))..)))).... ( -9.10)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	42	chr17:1464337-1464378	MYO1C	HGNC:7597	ENSG00000197879	GGGAGCGUGGGGACGGGGCUGGCCUUGGGAGGAGCGGCAGGG
hsa_m5C_5512	chr17	1464340	1464341	-	ENST00000648651	C4776	m5C	C38	5'-GGGAGCGUGGGGACGGGGCUGGCCUUGGGAGGAGCGGCAGGG-3'	.....(((....)))..((((.(((....)))..)))).... ( -9.10)	bulge	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	RMVar database	28418038	42	chr17:1464337-1464378	MYO1C	HGNC:7597	ENSG00000197879	GGGAGCGUGGGGACGGGGCUGGCCUUGGGAGGAGCGGCAGGG
hsa_m5C_5513	chr16	87491730	87491731	-	ENST00000671377	C1294	m5C	C5	5'-GGGCCACGGCGGCAAGGGCGCGCCCGGGCCGGG-3'	.((((..((((((....)).))))..))))... (-18.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	33	chr16:87491703-87491735	ZCCHC14	HGNC:24134	ENSG00000140948	GGGCCACGGCGGCAAGGGCGCGCCCGGGCCGGG
hsa_m5C_5514	chr16	87491728	87491729	-	ENST00000671377	C1296	m5C	C7	5'-GGGCCACGGCGGCAAGGGCGCGCCCGGGCCGGG-3'	.((((..((((((....)).))))..))))... (-18.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	33	chr16:87491703-87491735	ZCCHC14	HGNC:24134	ENSG00000140948	GGGCCACGGCGGCAAGGGCGCGCCCGGGCCGGG
hsa_m5C_5515	chr16	87491716	87491717	-	ENST00000671377	C1308	m5C	C19	5'-GGGCCACGGCGGCAAGGGCGCGCCCGGGCCGGG-3'	.((((..((((((....)).))))..))))... (-18.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	33	chr16:87491703-87491735	ZCCHC14	HGNC:24134	ENSG00000140948	GGGCCACGGCGGCAAGGGCGCGCCCGGGCCGGG
hsa_m5C_5516	chr16	87491714	87491715	-	ENST00000671377	C1310	m5C	C21	5'-GGGCCACGGCGGCAAGGGCGCGCCCGGGCCGGG-3'	.((((..((((((....)).))))..))))... (-18.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	33	chr16:87491703-87491735	ZCCHC14	HGNC:24134	ENSG00000140948	GGGCCACGGCGGCAAGGGCGCGCCCGGGCCGGG
hsa_m5C_5517	chr16	87491712	87491713	-	ENST00000671377	C1312	m5C	C23	5'-GGGCCACGGCGGCAAGGGCGCGCCCGGGCCGGG-3'	.((((..((((((....)).))))..))))... (-18.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	33	chr16:87491703-87491735	ZCCHC14	HGNC:24134	ENSG00000140948	GGGCCACGGCGGCAAGGGCGCGCCCGGGCCGGG
hsa_m5C_5518	chr16	87491711	87491712	-	ENST00000671377	C1313	m5C	C24	5'-GGGCCACGGCGGCAAGGGCGCGCCCGGGCCGGG-3'	.((((..((((((....)).))))..))))... (-18.30)	loop	mRNA	HeLa,rip antibody: ALYREF	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	RMVar database	28418038	33	chr16:87491703-87491735	ZCCHC14	HGNC:24134	ENSG00000140948	GGGCCACGGCGGCAAGGGCGCGCCCGGGCCGGG
hsa_m5C_5519	chr8	41265153	41265154	-	ENST00000220772	C1272	m5C	C6	5'-GGGGGCAGGGUGGGGAGGGAGCCUCGGGUGGGGUGGGAGCGGGGG-3'	.(((((..............))))).................... ( -6.50)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	45	chr8:41265115-41265159	SFRP1	HGNC:10776	ENSG00000104332	GGGGGCAGGGUGGGGAGGGAGCCUCGGGUGGGGUGGGAGCGGGGG
hsa_m5C_5520	chr19	45147180	45147181	+	ENST00000221462	C2842	m5C	C5	5'-GGGGCGAGUGGCAUGGGUGUGGGUGAGGGUGGGCAGAGGG-3'	...((......(((........))).......))...... ( -2.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	40	chr19:45147177-45147216	PPP1R37	HGNC:27607	ENSG00000104866	GGGGCGAGUGGCAUGGGUGUGGGUGAGGGUGGGCAGAGGG
hsa_m5C_5521	chr19	43639739	43639740	-	ENST00000222374	C111	m5C	C4	5'-GGCCGCGGCGGGGCCAG^GGGCAGGACAGG-3'	((((.......)))).............. ( -8.10)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	29	chr19:43627779-43627790;43639727-43639743	CADM4	HGNC:30825	ENSG00000105767	GGCCGCGGCGGGGCCAGGGGCAGGACAGG
hsa_m5C_5522	chr19	43639737	43639738	-	ENST00000222374	C113	m5C	C6	5'-GGCCGCGGCGGGGCCAG^GGGCAGGACAGG-3'	((((.......)))).............. ( -8.10)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	29	chr19:43627779-43627790;43639727-43639743	CADM4	HGNC:30825	ENSG00000105767	GGCCGCGGCGGGGCCAGGGGCAGGACAGG
hsa_m5C_5523	chr2	27033042	27033043	+	ENST00000238788	C79	m5C	C11	5'-GGGCGUGGGGCGGUGGGAGGUAGUGAAGAAGGG-3'	..((.....))...................... ( -1.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	33	chr2:27033033-27033065	TMEM214	HGNC:25983	ENSG00000119777	GGGCGUGGGGCGGUGGGAGGUAGUGAAGAAGGG
hsa_m5C_5524	chr19	49640042	49640043	-	ENST00000246792	C101	m5C	C25	5'-GGGGGCGGCCCCGGGGCGGGGGACCUGGGCCCGGGG-3'	........(((((((.((((...))))..))))))) (-19.40)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	36	chr19:49640032-49640067	RRAS	HGNC:10447	ENSG00000126458	GGGGGCGGCCCCGGGGCGGGGGACCUGGGCCCGGGG
hsa_m5C_5525	chr19	42376456	42376457	+	ENST00000251268	C8829	m5C	C6	5'-GGGGCCGGUGGGCCCUGGGGACCCAUGGG-3'	....((.(((((((....)).))))).)) (-13.30)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	29	chr19:42376452-42376480	MEGF8	HGNC:3233	ENSG00000105429	GGGGCCGGUGGGCCCUGGGGACCCAUGGG
hsa_m5C_5526	chr18	23136280	23136281	+	ENST00000256925	C797	m5C	C39	5'-GGGGUGGCGCGGGGGUUCGCGAGUCCCCUGGGCGCCGGCCGGG-3'	.((.(((((((((((.........)))))..)))))).))... (-24.10)	bulge	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	43	chr18:23136243-23136285	CABLES1	HGNC:25097	ENSG00000134508	GGGGUGGCGCGGGGGUUCGCGAGUCCCCUGGGCGCCGGCCGGG
hsa_m5C_5527	chr1	181022763	181022764	-	ENST00000258301	C107	m5C	C7	5'-GGGCAGCUGCGGGAACAGGCGGGGUGGGCGGAGGG-3'	..((.(((.((........)).)))..))...... ( -8.20)	bulge	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	35	chr1:181022736-181022770	STX6	HGNC:11441	ENSG00000135823	GGGCAGCUGCGGGAACAGGCGGGGUGGGCGGAGGG
hsa_m5C_5528	chr1	235327840	235327841	-	ENST00000264183	C339	m5C	C5	5'-GGGCCUGCUGGUUUUGGGGGGGAGAAGGAGAGAGGG-3'	...(((.((.......)).))).............. ( -5.30)	bulge	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4hunter score>=1.2:(Medium)	m6A-Atlas database	28418038	36	chr1:235327810-235327845	ARID4B	HGNC:15550	ENSG00000054267	GGGCCUGCUGGUUUUGGGGGGGAGAAGGAGAGAGGG
hsa_m5C_5529	chr19	460838	460839	-	ENST00000264554	C195	m5C	C4	5'-GGGCGGCUGGGGCCUCGGGGGG-3'	((((.......))))....... ( -4.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	22	chr19:460821-460842	SHC2	HGNC:29869	ENSG00000129946	GGGCGGCUGGGGCCUCGGGGGG
hsa_m5C_5530	chr19	460835	460836	-	ENST00000264554	C198	m5C	C7	5'-GGGCGGCUGGGGCCUCGGGGGG-3'	((((.......))))....... ( -4.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	22	chr19:460821-460842	SHC2	HGNC:29869	ENSG00000129946	GGGCGGCUGGGGCCUCGGGGGG
hsa_m5C_5531	chr19	460829	460830	-	ENST00000264554	C204	m5C	C13	5'-GGGCGGCUGGGGCCUCGGGGGG-3'	((((.......))))....... ( -4.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	22	chr19:460821-460842	SHC2	HGNC:29869	ENSG00000129946	GGGCGGCUGGGGCCUCGGGGGG
hsa_m5C_5532	chr19	460826	460827	-	ENST00000264554	C207	m5C	C16	5'-GGGCGGCUGGGGCCUCGGGGGG-3'	((((.......))))....... ( -4.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	22	chr19:460821-460842	SHC2	HGNC:29869	ENSG00000129946	GGGCGGCUGGGGCCUCGGGGGG
hsa_m5C_5533	chr7	98617783	98617784	+	ENST00000265634	C500	m5C	C9	5'-GGGGGCCACGGGCAAGGACACUAUGGGCGACCUGCCGCGGG-3'	.....((.((((((.((.............)))))).)))) ( -9.60)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	41	chr7:98617776-98617816	NPTX2	HGNC:7953	ENSG00000106236	GGGGGCCACGGGCAAGGACACUAUGGGCGACCUGCCGCGGG
hsa_m5C_5534	chr10	96043670	96043671	+	ENST00000265992	C278	m5C	C8	5'-GGGCCGGCGUCCGCCGCACGACGGCGGGGCUGGGGCUGUGAGGG-3'	...(((((.(((((((.....))))))))))))........... (-21.60)	bulge	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	44	chr10:96043664-96043707	CCNJ	HGNC:23434	ENSG00000107443	GGGCCGGCGUCCGCCGCACGACGGCGGGGCUGGGGCUGUGAGGG
hsa_m5C_5535	chr15	81001270	81001271	+	ENST00000267984	C349	m5C	C35	5'-GGGAGACUCGUGCAGGGGCGUCCGAUGCGCGGGGCCCGGGG-3'	(((...((((((((..((...))..)))))))).))).... (-18.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	41	chr15:81001237-81001277	TLNRD1	HGNC:13519	ENSG00000140406	GGGAGACUCGUGCAGGGGCGUCCGAUGCGCGGGGCCCGGGG
hsa_m5C_5536	chr15	81001271	81001272	+	ENST00000267984	C350	m5C	C36	5'-GGGAGACUCGUGCAGGGGCGUCCGAUGCGCGGGGCCCGGGG-3'	(((...((((((((..((...))..)))))))).))).... (-18.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	41	chr15:81001237-81001277	TLNRD1	HGNC:13519	ENSG00000140406	GGGAGACUCGUGCAGGGGCGUCCGAUGCGCGGGGCCCGGGG
hsa_m5C_5537	chr15	81001272	81001273	+	ENST00000267984	C351	m5C	C37	5'-GGGAGACUCGUGCAGGGGCGUCCGAUGCGCGGGGCCCGGGG-3'	(((...((((((((..((...))..)))))))).))).... (-18.80)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	41	chr15:81001237-81001277	TLNRD1	HGNC:13519	ENSG00000140406	GGGAGACUCGUGCAGGGGCGUCCGAUGCGCGGGGCCCGGGG
hsa_m5C_5538	chr2	219387856	219387857	-	ENST00000273075	C56	m5C	C17	5'-GGGGCACGCGGGGGACCUGCAAAGCUAGUGAGGGGCGGGG-3'	..(((..(((((...)))))...))).............. ( -8.30)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	40	chr2:219387834-219387873	DNPEP	HGNC:2981	ENSG00000123992	GGGGCACGCGGGGGACCUGCAAAGCUAGUGAGGGGCGGGG
hsa_m5C_5539	chr2	43637305	43637306	+	ENST00000282406	C47	m5C	C12	5'-GGGCUGAGAGUCCGGGGAUCCCGGGGGCCAGUCGCGGCCGGG-3'	.(((((.(((((((((...)))))..))...)).)))))... (-16.70)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	42	chr2:43637295-43637336	PLEKHH2	HGNC:30506	ENSG00000152527	GGGCUGAGAGUCCGGGGAUCCCGGGGGCCAGUCGCGGCCGGG
hsa_m5C_5540	chr17	82030963	82030964	+	ENST00000306688	C2511	m5C	C6	5'-GGGAACCCCGUGGGAGGCGCCUGGGAAGGG-3'	......((((.((......))))))..... ( -7.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr17:82030959-82030988	LRRC45	HGNC:28302	ENSG00000169683	GGGAACCCCGUGGGAGGCGCCUGGGAAGGG
hsa_m5C_5541	chr16	29901123	29901124	+	ENST00000308748	C637	m5C	C24	5'-GGGGAGCUGGGGGGACAGGGGAACUGGGG-3'	......(((......)))........... ( -2.70)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2;RNAfold:(High)	m6A-Atlas database	28418038	29	chr16:29901101-29901129	ASPHD1	HGNC:27380	ENSG00000174939	GGGGAGCUGGGGGGACAGGGGAACUGGGG
hsa_m5C_5542	chr4	83284747	83284748	-	ENST00000311469	C167	m5C	C12	5'-GGGCUCGCGAGCCGCGGGGUUCGCGCGGGGCCUGCGGG-3'	(((((((((((((....))))))))...)))))..... (-21.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	38	chr4:83284722-83284759	COQ2	HGNC:25223	ENSG00000173085	GGGCUCGCGAGCCGCGGGGUUCGCGCGGGGCCUGCGGG
hsa_m5C_5543	chr4	83284746	83284747	-	ENST00000311469	C168	m5C	C13	5'-GGGCUCGCGAGCCGCGGGGUUCGCGCGGGGCCUGCGGG-3'	(((((((((((((....))))))))...)))))..... (-21.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	38	chr4:83284722-83284759	COQ2	HGNC:25223	ENSG00000173085	GGGCUCGCGAGCCGCGGGGUUCGCGCGGGGCCUGCGGG
hsa_m5C_5544	chr8	2001569	2001570	+	ENST00000320248	C1545	m5C	C9	5'-GGGGAGCCCGCGCCCGUACCCCCGGGGUUCGGGGCGGUGUACGGG-3'	.....((((((.((((.((((...)))).)))))))).))..... (-22.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	45	chr8:2001562-2001606	KBTBD11	HGNC:29104	ENSG00000176595	GGGGAGCCCGCGCCCGUACCCCCGGGGUUCGGGGCGGUGUACGGG
hsa_m5C_5545	chr19	45901387	45901388	-	ENST00000322217	C482	m5C	C6	5'-GGGGGCAGGUGCUGGGGCGGAGG-3'	...(((....))).......... ( -1.70)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	23	chr19:45901371-45901393	MYPOP	HGNC:20178	ENSG00000176182	GGGGGCAGGUGCUGGGGCGGAGG
hsa_m5C_5546	chr7	30285467	30285468	+	ENST00000323037	C872	m5C	C15	5'-GGGACCGCGGGCGGCGGCGGGGGCGCUCGGG-3'	....((.(((((.((.......))))))))) (-11.10)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	31	chr7:30285454-30285484	ZNRF2	HGNC:22316	ENSG00000180233	GGGACCGCGGGCGGCGGCGGGGGCGCUCGGG
hsa_m5C_5547	chr7	5898832	5898833	+	ENST00000325974	C101	m5C	C16	5'-GGGGCCGGGAGCGGGCCCUGGG-3'	(((.(((....))).))).... (-12.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	22	chr7:5898818-5898839	CCZ1	HGNC:21691	ENSG00000122674	GGGGCCGGGAGCGGGCCCUGGG
hsa_m5C_5548	chr7	5898833	5898834	+	ENST00000325974	C102	m5C	C17	5'-GGGGCCGGGAGCGGGCCCUGGG-3'	(((.(((....))).))).... (-12.40)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	22	chr7:5898818-5898839	CCZ1	HGNC:21691	ENSG00000122674	GGGGCCGGGAGCGGGCCCUGGG
hsa_m5C_5549	chr11	120211045	120211046	+	ENST00000328965	C15	m5C	C5	5'-GGGGCCGCGGAGCCGGGCCGGGGCAGCGCCGUCUCCGCCUCGGG-3'	(((((...((((.(((((.......)).))).)))))))))... (-19.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	44	chr11:120211042-120211085	OAF	HGNC:28752	ENSG00000184232	GGGGCCGCGGAGCCGGGCCGGGGCAGCGCCGUCUCCGCCUCGGG
hsa_m5C_5550	chr11	120211046	120211047	+	ENST00000328965	C16	m5C	C6	5'-GGGGCCGCGGAGCCGGGCCGGGGCAGCGCCGUCUCCGCCUCGGG-3'	(((((...((((.(((((.......)).))).)))))))))... (-19.70)	loop	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	22344696	44	chr11:120211042-120211085	OAF	HGNC:28752	ENSG00000184232	GGGGCCGCGGAGCCGGGCCGGGGCAGCGCCGUCUCCGCCUCGGG
hsa_m5C_5551	chr22	39244140	39244141	-	ENST00000331163	C842	m5C	C5	5'-GGGGCCGGGGGCGGCGGCGCCCGGGGGCCAUGCGGG-3'	..((((..(((((....)))))...))))....... (-19.20)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	36	chr22:39244110-39244145	PDGFB	HGNC:8800	ENSG00000100311	GGGGCCGGGGGCGGCGGCGCCCGGGGGCCAUGCGGG
hsa_m5C_5552	chrX	54044043	54044044	-	ENST00000338154	C430	m5C	C9	5'-GGGGGGCUCGAGGGGAAGGCGAGCGAGGUUCCCGGCGGUACGGG-3'	(((((.((((.............)))).)))))........... (-13.10)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	44	chrX:54044009-54044052	PHF8	HGNC:20672	ENSG00000172943	GGGGGGCUCGAGGGGAAGGCGAGCGAGGUUCCCGGCGGUACGGG
hsa_m5C_5553	chr5	14487548	14487549	+	ENST00000344204	C7305	m5C	C24	5'-GGGGGCAGCGGCGGGGGUGGGGGCAGCGGCGGCGGCGGGG-3'	....((.((.((....((....))....)).)).)).... (-10.20)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	40	chr5:14487526-14487565	TRIO	HGNC:12303	ENSG00000038382	GGGGGCAGCGGCGGGGGUGGGGGCAGCGGCGGCGGCGGGG
hsa_m5C_5554	chr11	65616277	65616278	+	ENST00000355703	C503	m5C	C7	5'-GGGUCCCGGGAGGGGGGGCGCGGG-3'	..(((((.......)))))..... ( -8.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	24	chr11:65616272-65616295	PCNX3	HGNC:18760	ENSG00000197136	GGGUCCCGGGAGGGGGGGCGCGGG
hsa_m5C_5555	chr1	205610189	205610190	-	ENST00000357992	C8041	m5C	C6	5'-GGGAUCUUCUGGAUGGGGUCGGGGAGGAGGUGGG-3'	.....(((((.(((...))).)))))........ ( -7.80)	bulge	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	34	chr1:205610162-205610195	ELK4	HGNC:3326	ENSG00000158711	GGGAUCUUCUGGAUGGGGUCGGGGAGGAGGUGGG
hsa_m5C_5556	chr1	26892492	26892493	-	ENST00000361720	C1304	m5C	C12	5'-GGGCUGAGGGCCAGGGCCUGGG-3'	(((((.........)))))... ( -5.80)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;RNAfold:(High)	m6A-Atlas database	28418038	22	chr1:26892483-26892504	GPATCH3	HGNC:25720	ENSG00000198746	GGGCUGAGGGCCAGGGCCUGGG
hsa_m5C_5557	chr1	201154295	201154296	-	ENST00000367330	C179	m5C	C5	5'-GGGCCCGAGCGGGGAGGAGCUGCGGGGCGGG-3'	..((((..((((.......)))).))))... (-13.60)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	31	chr1:201154270-201154300	TMEM9	HGNC:18823	ENSG00000116857	GGGCCCGAGCGGGGAGGAGCUGCGGGGCGGG
hsa_m5C_5558	chr1	63324220	63324221	+	ENST00000371116	C1655	m5C	C7	5'-GGGGCCCCGCGGCUCCUGGGGGCUCGGCGGUGGGCGCUGGGG-3'	((((((....))))))......(((((((.....))))))). (-21.10)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	42	chr1:63324215-63324256	FOXD3	HGNC:3804	ENSG00000187140	GGGGCCCCGCGGCUCCUGGGGGCUCGGCGGUGGGCGCUGGGG
hsa_m5C_5559	chr6	42564242	42564243	+	ENST00000372899	C215	m5C	C28	5'-GGGACUGAUUGCCUGGGGCAGGGGUGGCAGUCGAGGCCGCCGGG-3'	........(((((...))))).((((((.......))))))... (-15.00)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	44	chr6:42564216-42564259	UBR2	HGNC:21289	ENSG00000024048	GGGACUGAUUGCCUGGGGCAGGGGUGGCAGUCGAGGCCGCCGGG
hsa_m5C_5560	chr9	109320361	109320362	-	ENST00000374566	C698	m5C	C13	5'-GGGGCCGCCGGGCUGGGGGACGAGCGCGAUGGGGGGCCACGGGGG-3'	..((((.((..(((........)))......)).))))....... (-15.70)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	45	chr9:109320330-109320374	EPB41L4B	HGNC:19818	ENSG00000095203	GGGGCCGCCGGGCUGGGGGACGAGCGCGAUGGGGGGCCACGGGGG
hsa_m5C_5561	chr13	112690383	112690384	+	ENST00000375645	C347	m5C	C28	5'-GGGCGCGCCGAGCCGGGCGCGGGGGCGCUGAACGGCGGAGCGGG-3'	...(((.((..(((((((((....)))))...)))))).))).. (-21.30)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	44	chr13:112690357-112690400	ATP11A	HGNC:13552	ENSG00000068650	GGGCGCGCCGAGCCGGGCGCGGGGGCGCUGAACGGCGGAGCGGG
hsa_m5C_5562	chr11	64906429	64906430	-	ENST00000377264	C3161	m5C	C8	5'-GGGUGACCGAGCGGGGAGCCUCGGGCCGCAAGGG-3'	..(((.((((((.....)).))))..)))..... (-10.60)	bulge	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	34	chr11:64906404-64906437	ATG2A	HGNC:29028	ENSG00000110046	GGGUGACCGAGCGGGGAGCCUCGGGCCGCAAGGG
hsa_m5C_5563	chr1	2228712	2228713	+	ENST00000378536	C395	m5C	C27	5'-GGGGCGCGCGGGGCGGCGGCGGGGGCCGGGGGGG-3'	....(((.....))).((((....))))...... (-11.20)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	34	chr1:2228687-2228720	SKI	HGNC:10896	ENSG00000157933	GGGGCGCGCGGGGCGGCGGCGGGGGCCGGGGGGG
hsa_m5C_5564	chr3	126475702	126475703	-	ENST00000389709	C189	m5C	C16	5'-GGGCCCGGGGCGCGGCCCGGGGAGGCCUCCGGG-3'	...(((((((.((..((...))..))))))))) (-17.20)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	33	chr3:126475686-126475718	ZXDC	HGNC:28160	ENSG00000070476	GGGCCCGGGGCGCGGCCCGGGGAGGCCUCCGGG
hsa_m5C_5565	chr17	82052107	82052108	+	ENST00000392358	C151	m5C	C24	5'-GGGCCUCCGCGGGCAGCGCGCGUCGGGGGCUGCAGGG-3'	.((((((((((.((...)).)).))))))))...... (-20.60)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	37	chr17:82052085-82052121	GPS1	HGNC:4549	ENSG00000169727	GGGCCUCCGCGGGCAGCGCGCGUCGGGGGCUGCAGGG
hsa_m5C_5566	chr12	103841067	103841068	-	ENST00000392876	C167	m5C	C19	5'-GGGGUGGCUGCGGGACCGCGGCUCGGGGGCGGCCGUGUGCGGG-3'	.......(((((....((((((.((....))))))))))))). (-17.10)	bulge	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	43	chr12:103841044-103841086	NT5DC3	HGNC:30826	ENSG00000111696	GGGGUGGCUGCGGGACCGCGGCUCGGGGGCGGCCGUGUGCGGG
hsa_m5C_5567	chr1	109985012	109985013	+	ENST00000393614	C249	m5C	C35	5'-GGGCAGGCGGGCGGGCGCCAGAGGGGGAAAGAGGCGGGG-3'	.....((((......)))).................... ( -7.40)	bulge	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	39	chr1:109984979-109985017	AHCYL1	HGNC:344	ENSG00000168710	GGGCAGGCGGGCGGGCGCCAGAGGGGGAAAGAGGCGGGG
hsa_m5C_5568	chr6	30721893	30721894	+	ENST00000396389	C228	m5C	C14	5'-GGGAGAUGUGGGGCCGAGGUGGGCGAAUUGGG-3'	............(((......)))........ ( -5.30)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	32	chr6:30721881-30721912	TUBB	HGNC:20778	ENSG00000196230	GGGAGAUGUGGGGCCGAGGUGGGCGAAUUGGG
hsa_m5C_5569	chr6	30721894	30721895	+	ENST00000396389	C229	m5C	C15	5'-GGGAGAUGUGGGGCCGAGGUGGGCGAAUUGGG-3'	............(((......)))........ ( -5.30)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	32	chr6:30721881-30721912	TUBB	HGNC:20778	ENSG00000196230	GGGAGAUGUGGGGCCGAGGUGGGCGAAUUGGG
hsa_m5C_5570	chr22	37519442	37519443	-	ENST00000403299	C100	m5C	C6	5'-GGGGACGGGGGCGGAGCCGGGGGCGCCACGGG-3'	.....((((.((..........)).)).)).. ( -8.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	32	chr22:37519417-37519448	CARD10	HGNC:16422	ENSG00000100065	GGGGACGGGGGCGGAGCCGGGGGCGCCACGGG
hsa_m5C_5571	chr19	49595984	49595985	+	ENST00000418929	C2123	m5C	C25	5'-GGGCCAUGGGGGUGGCUGGGGACCCAGCUCCCUGGG-3'	...(((.(((...((((((....)))))))))))). (-16.90)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	36	chr19:49595961-49595996	PRR12	HGNC:29217	ENSG00000126464	GGGCCAUGGGGGUGGCUGGGGACCCAGCUCCCUGGG
hsa_m5C_5572	chr3	50227187	50227188	+	ENST00000422163	C897	m5C	C20	5'-GGGUGUCACUGGGGACGUUCUGAGG^GUGCUGGGG-3'	........((.((.((.((...)).)).)).)). ( -6.20)	bulge	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	34	chr3:50227169-50227193;50252100-50252108	GNAI2	HGNC:4385	ENSG00000114353	GGGUGUCACUGGGGACGUUCUGAGGGUGCUGGGG
hsa_m5C_5573	chr17	46192958	46192959	-	ENST00000432791	C471	m5C	C31	5'-GGGCGGCUCCGGGCGUCGGGGGGAGGAGAGCGGCGGG-3'	..((.((((......((.....))...)))).))... ( -9.50)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	37	chr17:46192953-46192989	KANSL1	HGNC:24565	ENSG00000120071	GGGCGGCUCCGGGCGUCGGGGGGAGGAGAGCGGCGGG
hsa_m5C_5574	chr11	63763259	63763260	-	ENST00000433688	C2348	m5C	C23	5'-GGGCCGGGCGGAGACGGGGGAUCGGGUGGG-3'	...(((........)))............. ( -4.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	30	chr11:63763253-63763282	ZFTA	HGNC:28449	ENSG00000188070	GGGCCGGGCGGAGACGGGGGAUCGGGUGGG
hsa_m5C_5575	chr11	63762846	63762847	-	ENST00000433688	C2761	m5C	C24	5'-GGGCUUCCAGCGGGAGGCUGGGCCGCAGGG-3'	.(((..(((((.....))))))))...... (-13.10)	loop	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	30	chr11:63762841-63762870	ZFTA	HGNC:28449	ENSG00000188070	GGGCUUCCAGCGGGAGGCUGGGCCGCAGGG
hsa_m5C_5576	chrX	150693565	150693566	+	ENST00000445323	C171	m5C	C7	5'-GGGCUGCGAGGGCGGCGGGGGCCCGAACCCGGG-3'	..(((((....)))))(((........)))... (-13.80)	bulge	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	33	chrX:150693560-150693592	MTMR1	HGNC:7449	ENSG00000063601	GGGCUGCGAGGGCGGCGGGGGCCCGAACCCGGG
hsa_m5C_5577	chr17	7848923	7848924	+	ENST00000448097	C3157	m5C	C11	5'-GGGCCCUGGGCCCGGGAGCGCAGGG-3'	...(((((.((......)).))))) (-12.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr17:7848914-7848938	KDM6B	HGNC:29012	ENSG00000132510	GGGCCCUGGGCCCGGGAGCGCAGGG
hsa_m5C_5578	chr17	7848924	7848925	+	ENST00000448097	C3158	m5C	C12	5'-GGGCCCUGGGCCCGGGAGCGCAGGG-3'	...(((((.((......)).))))) (-12.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr17:7848914-7848938	KDM6B	HGNC:29012	ENSG00000132510	GGGCCCUGGGCCCGGGAGCGCAGGG
hsa_m5C_5579	chr17	7848925	7848926	+	ENST00000448097	C3159	m5C	C13	5'-GGGCCCUGGGCCCGGGAGCGCAGGG-3'	...(((((.((......)).))))) (-12.20)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	25	chr17:7848914-7848938	KDM6B	HGNC:29012	ENSG00000132510	GGGCCCUGGGCCCGGGAGCGCAGGG
hsa_m5C_5580	chr1	18904799	18904800	-	ENST00000455833	C5659	m5C	C20	5'-GGGCCCUGGGGGGAGGGAUCAGGG-3'	...((((((.........)))))) ( -7.10)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	24	chr1:18904796-18904819	IFFO2	HGNC:27006	ENSG00000169991	GGGCCCUGGGGGGAGGGAUCAGGG
hsa_m5C_5581	chr17	28645086	28645087	-	ENST00000528896	C72	m5C	C21	5'-GGGCCCGGCAUGGCGGGGGCCGGGGCCAAGCCGGG-3'	...((((((.((((..........)))).)))))) (-19.40)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	35	chr17:28645073-28645107	BLTP2	HGNC:28960	ENSG00000007202	GGGCCCGGCAUGGCGGGGGCCGGGGCCAAGCCGGG
hsa_m5C_5582	chr11	67250653	67250654	+	ENST00000529006	C3494	m5C	C9	5'-GGGGGGUGCAGCCAGGCUGAAUGGCCGGGGCAGUUGGG-3'	...((.(((..((.((((....)))))).))).))... (-11.30)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	38	chr11:67250646-67250683	KDM2A	HGNC:13606	ENSG00000173120	GGGGGGUGCAGCCAGGCUGAAUGGCCGGGGCAGUUGGG
hsa_m5C_5583	chr19	14090486	14090487	-	ENST00000533683	C265	m5C	C40	5'-GGGAGGCGGAGGAGGCGGGCAGCGGCGGAGGGAGGGGAGCCGGGG-3'	.....((.......))......((((............))))... ( -7.50)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	45	chr19:14090482-14090526	SAMD1	HGNC:17958	ENSG00000141858	GGGAGGCGGAGGAGGCGGGCAGCGGCGGAGGGAGGGGAGCCGGGG
hsa_m5C_5584	chr16	1999922	1999923	-	ENST00000562103	C1700	m5C	C21	5'-GGGAAGGGGAGCAGGGGCGGCAGGAAGGG-3'	..........((....))........... ( -0.60)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener;G4hunter score>=1.2:(High)	m6A-Atlas database	28418038	29	chr16:1999915-1999943	ZNF598	HGNC:28079	ENSG00000167962	GGGAAGGGGAGCAGGGGCGGCAGGAAGGG
hsa_m5C_5585	chr19	55613662	55613663	+	ENST00000568956	C157	m5C	C28	5'-GGGCAGCGGCGCCGGGGGUGGCGGGAGCAGCGGCAUCGGG-3'	..((.((..(((((....)))))...)).))......... (-12.70)	loop	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	40	chr19:55613636-55613675	ZNF865	HGNC:38705	ENSG00000261221	GGGCAGCGGCGCCGGGGGUGGCGGGAGCAGCGGCAUCGGG
hsa_m5C_5586	chr19	1226108	1226109	+	ENST00000585465	C2497	m5C	C15	5'-GGGCCAGGGUGCCCCAGGGGAGCACGGG-3'	........((((((....)).))))... ( -7.50)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	28	chr19:1226095-1226122	STK11	HGNC:11389	ENSG00000118046	GGGCCAGGGUGCCCCAGGGGAGCACGGG
hsa_m5C_5587	chr19	13795710	13795711	+	ENST00000590508	C269	m5C	C35	5'-GGGGCUGCCCCGCGGGACCCGAGGAGCGCGAUGCCGGGGCCGGGG-3'	((((...)))).(((..((((....((.....)))))).)))... (-16.80)	loop	mRNA	SNB19	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	45	chr19:13795677-13795721	ZSWIM4	HGNC:25704	ENSG00000132003	GGGGCUGCCCCGCGGGACCCGAGGAGCGCGAUGCCGGGGCCGGGG
hsa_m5C_5588	chr19	55593421	55593422	-	ENST00000590714	C4624	m5C	C4	5'-GGGCCCCGAGGGGGCAGGCGCGGGUCUGGGCAGCUGGG-3'	..(((((...))))).(((((........)).)))... (-13.70)	bulge	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	38	chr19:55593388-55593425	FIZ1	HGNC:25917	ENSG00000179943	GGGCCCCGAGGGGGCAGGCGCGGGUCUGGGCAGCUGGG
hsa_m5C_5589	chr19	55593420	55593421	-	ENST00000590714	C4625	m5C	C5	5'-GGGCCCCGAGGGGGCAGGCGCGGGUCUGGGCAGCUGGG-3'	..(((((...))))).(((((........)).)))... (-13.70)	bulge	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	38	chr19:55593388-55593425	FIZ1	HGNC:25917	ENSG00000179943	GGGCCCCGAGGGGGCAGGCGCGGGUCUGGGCAGCUGGG
hsa_m5C_5590	chr19	39826910	39826911	-	ENST00000593685	C1641	m5C	C36	5'-GGGCGUGCAGACGGGCGGGCCCGGGGGCCGGCGGGCGGG-3'	((((.(((......))).))))....(((....)))... (-19.00)	bulge	mRNA	MRC-5	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	39	chr19:39826908-39826946	DYRK1B	HGNC:3092	ENSG00000105204	GGGCGUGCAGACGGGCGGGCCCGGGGGCCGGCGGGCGGG
hsa_m5C_5591	chr19	48499600	48499601	-	ENST00000600059	C1727	m5C	C10	5'-GGGGCCGGCCGGGGUGGGGGGG-3'	....((.((....)).)).... ( -4.00)	bulge	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	22	chr19:48499589-48499610	LMTK3	HGNC:19295	ENSG00000142235	GGGGCCGGCCGGGGUGGGGGGG
hsa_m5C_5592	chr19	18568761	18568762	+	ENST00000602094	C2122	m5C	C5	5'-GGGACAAGGCUCUCUCCCGAGGGGUGUGGAAUUCCUGGGGGGG-3'	(((......))).(((((.((((((.....)))))).))))). (-18.40)	bulge	mRNA	HeLa	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	22344696	43	chr19:18568758-18568800	KXD1	HGNC:28420	ENSG00000105700	GGGACAAGGCUCUCUCCCGAGGGGUGUGGAAUUCCUGGGGGGG
hsa_m5C_5593	chr19	4969147	4969148	+	ENST00000611640	C36	m5C	C10	5'-GGGCCCGGCCCGAGCGGGGCCUGGGGGUGCGACGCCGAGGG-3'	...((((((((.....))))).)))((((...))))..... (-20.00)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	41	chr19:4969139-4969179	KDM4B	HGNC:29136	ENSG00000127663	GGGCCCGGCCCGAGCGGGGCCUGGGGGUGCGACGCCGAGGG
hsa_m5C_5594	chr1	46303164	46303165	-	ENST00000617190	C452	m5C	C4	5'-GGGCGGUGAGCGCCCAUAUGGGGGUUCUGGAGAGCGGGGUGUGGG-3'	(((((.....)))))((((....((((....))))...))))... (-14.20)	bulge	mRNA	HCT116	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	45	chr1:46303124-46303168	LRRC41	HGNC:16917	ENSG00000132128	GGGCGGUGAGCGCCCAUAUGGGGGUUCUGGAGAGCGGGGUGUGGG
hsa_m5C_5595	chr3	12484774	12484775	+	ENST00000679367	C213	m5C	C4	5'-GGGCUGGUGGGGCUGGG-3'	.((((.....))))... ( -3.30)	loop	mRNA	293T	RNA-BisSeq:(High)	pqsfinder&qgrs;G4RNA screener:(Medium)	m6A-Atlas database	28418038	17	chr3:12484772-12484788	TSEN2	HGNC:28422	ENSG00000154743	GGGCUGGUGGGGCUGGG
hsa_m5C_5596	chr12	49039989	49039990	-	ENST00000683543	C8999	m5C	C11	5'-GGGCAGCCCCCUGGGGCCCAGCAGCGGGUCCACAGGGG-3'	.......((((((((((((......)))))).)))))) (-23.90)	loop	mRNA	Huh7	RNA-BisSeq:(High)	pqsfinder&qgrs:(Low)	m6A-Atlas database	28418038	38	chr12:49039963-49040000	KMT2D	HGNC:7133	ENSG00000167548	GGGCAGCCCCCUGGGGCCCAGCAGCGGGUCCACAGGGG
